AlfalfaGEDB | Msa0937150

M. sativa cultivar zhongmu-4 / Msa0937150

KEGG: K17675
GO: GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
PFAM: PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0937150	sp\|F4KFV7\|SUV3L_ARATH	70.774	633	168	3	80	712	158	773	0.0	970

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0937150	A0A396H9S3	90.909	77	7	0	2	78	33	109	2.69e-34	151
Msa0937150	A0A396H9S3	96.201	658	18	2	67	717	170	827	0.0	1311

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011960	Msa0937150	0.815897	7.306706e-52	-8.615850e-47
Msa0021210	Msa0937150	0.829427	5.180193e-55	-8.615850e-47
Msa0027770	Msa0937150	0.802918	4.465245e-49	-8.615850e-47
Msa0029240	Msa0937150	0.807830	4.173841e-50	-8.615850e-47
Msa0031180	Msa0937150	0.800452	1.432014e-48	-8.615850e-47
Msa0033950	Msa0937150	0.819204	1.313320e-52	-8.615850e-47
Msa0034030	Msa0937150	0.815587	8.564690e-52	-8.615850e-47
Msa0036140	Msa0937150	0.812272	4.609406e-51	-8.615850e-47
Msa0037880	Msa0937150	0.816401	5.635573e-52	-8.615850e-47
Msa0054440	Msa0937150	0.801070	1.070881e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0937150	MtrunA17_Chr6g0453111	96.201	658	18	2	67	717	170	827	0.0	1311
Msa0937150	MtrunA17_Chr6g0453111	90.909	77	7	0	2	78	33	109	5.19e-38	151
Msa0937150	MtrunA17_Chr5g0394741	42.683	492	275	5	179	666	62	550	9.65e-137	414
Msa0937150	MtrunA17_Chr3g0081811	53.846	104	18	1	218	321	1	74	3.93e-26	102
Msa0937150	MtrunA17_Chr3g0081761	63.380	71	16	1	292	352	22	92	1.56e-19	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0937150	AT5G39840.1	70.774	633	168	3	80	712	158	773	0.0	970
Msa0937150	AT4G14790.1	44.906	481	259	4	179	656	72	549	2.90e-140	424
Msa0937150	AT4G14790.2	44.906	481	259	4	179	656	72	549	2.90e-140	424

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Find 170 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTTCATATCTTG+GGG	0.570449	6_3:+8245794	None:intergenic
AAACAAAACTCAACAAATAT+AGG	0.370786	6_3:+8249932	None:intergenic
AAAGACGACTTTAGGATTGA+AGG	0.456067	6_3:-8246076	Msa0937150:three_prime_UTR
AAAGTAGTGGCGAGTCCATC+GGG	0.475445	6_3:+8248993	None:intergenic
AAATATCTCTCTCCTTGAGA+AGG	0.578653	6_3:+8249301	None:intergenic
AAATCACCCTTCGAATGTTA+AGG	0.371191	6_3:+8249117	None:intergenic
AAATCTCTAATATGTTAGAG+AGG	0.629524	6_3:-8248761	Msa0937150:CDS
AAATGCATCTATCAAGTAGC+AGG	0.498214	6_3:-8245746	Msa0937150:three_prime_UTR
AACCTTCGTCACATGATCAA+AGG	0.516882	6_3:+8248926	None:intergenic
AACTCCTAGACCTTGAGAGT+AGG	0.660909	6_3:-8248569	Msa0937150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCAAATGGGTCGAAAAA+TGG	+	chr6_3:8245769-8245788	None:intergenic	30.0%
TTCAATCTTTGACACAAACT+AGG	+	chr6_3:8245806-8245825	None:intergenic	30.0%
GTTTGTGGTTTATCTGAAAA+TGG	-	chr6_3:8245971-8245990	Msa0937150:three_prime_UTR	30.0%
TTGTGGTTTATCTGAAAATG+GGG	-	chr6_3:8245973-8245992	Msa0937150:three_prime_UTR	30.0%
AATGGGGTTCATTTAGATTA+TGG	-	chr6_3:8245989-8246008	Msa0937150:three_prime_UTR	30.0%
TGAATTAGAGAATAAGAGTG+AGG	-	chr6_3:8246108-8246127	Msa0937150:three_prime_UTR	30.0%
TGAGCTAAAGAATGTGAAAA+AGG	-	chr6_3:8246180-8246199	Msa0937150:three_prime_UTR	30.0%
GAGCTAAAGAATGTGAAAAA+GGG	-	chr6_3:8246181-8246200	Msa0937150:three_prime_UTR	30.0%
TAAGTCTTACCACTATTAGT+AGG	+	chr6_3:8246580-8246599	None:intergenic	30.0%
ACTACAATAAATTCCCTTCT+TGG	+	chr6_3:8246629-8246648	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	8245725	8250659	8245725	ID=Msa0937150;Name=Msa0937150
chr6_3	mRNA	8245725	8250659	8245725	ID=Msa0937150-mRNA-1;Parent=Msa0937150;Name=Msa0937150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.66\|0.5\|1\|0.66\|0.5\|4\|526\|717
chr6_3	exon	8245725	8246209	8245725	ID=Msa0937150-mRNA-1:exon:2700;Parent=Msa0937150-mRNA-1
chr6_3	exon	8246895	8246966	8246895	ID=Msa0937150-mRNA-1:exon:2699;Parent=Msa0937150-mRNA-1
chr6_3	exon	8248294	8250182	8248294	ID=Msa0937150-mRNA-1:exon:2698;Parent=Msa0937150-mRNA-1
chr6_3	exon	8250426	8250659	8250426	ID=Msa0937150-mRNA-1:exon:2697;Parent=Msa0937150-mRNA-1
chr6_3	CDS	8250426	8250659	8250426	ID=Msa0937150-mRNA-1:cds;Parent=Msa0937150-mRNA-1
chr6_3	CDS	8248294	8250182	8248294	ID=Msa0937150-mRNA-1:cds;Parent=Msa0937150-mRNA-1
chr6_3	CDS	8246936	8246966	8246936	ID=Msa0937150-mRNA-1:cds;Parent=Msa0937150-mRNA-1
chr6_3	three_prime_UTR	8246895	8246935	8246895	ID=Msa0937150-mRNA-1:three_prime_utr;Parent=Msa0937150-mRNA-1
chr6_3	three_prime_UTR	8245725	8246209	8245725	ID=Msa0937150-mRNA-1:three_prime_utr;Parent=Msa0937150-mRNA-1

Gene Sequence

>Msa0937150

TTGAATTCATCTTCAAATTCTCAATTTCATGCCCCTTTTCGCCATTTTTCGACCCATTTGATAAAATCTCGTTTTTGTCCTAGTTTGTGTCAAAGATTGAATTTTTATGGTGGTAGAAGCCTGCCCATCAGACCCTTTTCGACAGACGGCGAGGAGGGTGGTAAAGAAGCTGATTTGGATACCGAAATCGAAAAGGGTGTCGGTGAAAATGACGAATTTGAGCTTGGAAATGAGGGTGCTAAGTTGACTAGAGATGAGGTGGAAGTGTTTCAAGATGTGTTTCATCATTTTGCTAAATCGGGTTGGGCTTCGAATCAAGCACTTGCTATGTACATTGGTTTGTCTTTTTATCCGACGGCTGCACACAAGTTTCGGAATTTTTTCATGAAGAGATGTCCTGAGGATGTTGCTAAGTACTTGATTTCGCTTGGACCGTGTGATGAGGCTGTGAAGTTTTTGTTTCCTATATTTGTTGAGTTTTGTTTGGAAAATTTTACTGATGAGATCACGAGGTTTAGGGAGATGGTTAAGTCGGCTGACCTCACGATGCCTCATACTTGGTTTCCTTTCGCAAGGGCGATGAAAAGGAAGATAATTTATCATTGTGGGCCTACTAATAGTGGTAAGACTTATAATGCTTTGCAGAGGTTTATGGAGGCCAAGAAGGGAATTTATTGTAGTCCGCTTAGATTGTTGGCTATGGAAGTTTTTGATAAAGTTAATGCGAAGGGTGTTTATTGTAGTCTGTTAACTGGTCAAGAGAAGAAGTATTTACCATTTTCAAATCATGTTGCGTGTACTGTTGAAATGGCATCGACGCAGGAATTGTATGATGTGGCTATTGTTGATGAAATTCAGATGATGGCAGATCCGTATAGAGGTTATGCATGGACTAGGGCGCTCCTTGGTTTGATGGCTGACGAGATACATTTATGCGGTGATCCTAGTGTTTTGGATATTGTTCGAAAGATCTGTCAGGACACAGGAGATGATTTGTATGAGCAACATTATGAGAGGTTCAAACCGTTGGTAGTCGAAGCAAAGACCCTGCTTGGAAATCTTGAGAATATTAAGTCTGGGGACTGTGTTGTTGCCTTCTCAAGGAGAGAGATATTTGAGGTTAAATTAGCTATCGAGAAACTCACTAATCATAAATGTTGCGTGATATACGGAGCTTTGCCACCAGAGACTCGTAGGCAGCAAGCTAATTTGTTCAACGATCAAAGTAATGAATATGACGTTCTAGTAGCTAGTGATGCAGTGGGGATGGGCCTTAACCTTAACATTCGAAGGGTGATTTTTAATAACCTTTCAAAGTACAACGGTGACAAAATTCTTCCTGTTCCAGCGTCACAGGTTAAGCAAATTGCAGGAAGAGCTGGTCGAAGAGGATGTGTTTATCCCGATGGACTCGCCACTACTTTGCATTTAGAGGATTTGGATTACTTGATCGAGTGTTTGAAACAGCCCTTTGATCATGTGACGAAGGTTGGCCTTTTTCCTTATTATGAGCAGGTTGAATTGTTCGCCGGACAACTTCCTAACATGACATTCAGCCAGCTTTTAGAAAAATTCGGCGAAAATTGCCGTTTAGACGGATCGTACTTCTTGTGTCGACATGATCATATAAAGAAAATCTCTAATATGTTAGAGAGGATTCCAGGGTTATCTTTAGAAGAACGATTCAACTTCTGTTTTGCTCCTATTAATGTTAGGGACCCAAAAGCTATGTACCACTTACTCAGATTTGCTACAGCGTTTGGTCAGAAGGTTCCCGTCAACATAGCTATGGGCATGCCAAAAGGTTCGGCACGGAATGACTCAGAACTCCTAGACCTTGAGAGTAGGCATCAAGTGTTATCTTCGTATATGTGGTTATCAAACCACTTTGATAAGGAAAAATTTCCATATGCGGAGAAAGCCCAAGCAATGGCTGCGGATATTGCTATCTTACTTGCTCAATCTCTTAGAAAAGCTGATTGGAAACCTGAATCAAGGGGGAGAGGGAAACCAAAAGCTGCAGATAGTGAAGAGCCGCAAACAGAACCAAGAAGTGATACTTTAGAAACTGAAAAGAAGAATCATTATTCAAGACCACAGTCTCTTGTTAAAGTATATGAACAGAAACGGCAAAAAGTGTTCTTTACACTCTGA

Protein sequence

>Msa0937150

LNSSSNSQFHAPFRHFSTHLIKSRFCPSLCQRLNFYGGRSLPIRPFSTDGEEGGKEADLDTEIEKGVGENDEFELGNEGAKLTRDEVEVFQDVFHHFAKSGWASNQALAMYIGLSFYPTAAHKFRNFFMKRCPEDVAKYLISLGPCDEAVKFLFPIFVEFCLENFTDEITRFREMVKSADLTMPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAKGVYCSLLTGQEKKYLPFSNHVACTVEMASTQELYDVAIVDEIQMMADPYRGYAWTRALLGLMADEIHLCGDPSVLDIVRKICQDTGDDLYEQHYERFKPLVVEAKTLLGNLENIKSGDCVVAFSRREIFEVKLAIEKLTNHKCCVIYGALPPETRRQQANLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNNLSKYNGDKILPVPASQVKQIAGRAGRRGCVYPDGLATTLHLEDLDYLIECLKQPFDHVTKVGLFPYYEQVELFAGQLPNMTFSQLLEKFGENCRLDGSYFLCRHDHIKKISNMLERIPGLSLEERFNFCFAPINVRDPKAMYHLLRFATAFGQKVPVNIAMGMPKGSARNDSELLDLESRHQVLSSYMWLSNHFDKEKFPYAEKAQAMAADIAILLAQSLRKADWKPESRGRGKPKAADSEEPQTEPRSDTLETEKKNHYSRPQSLVKVYEQKRQKVFFTL*