AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178110 MtrunA17_Chr8g0348991 92.287 363 17 1 1 352 1 363 0.0 683
Msa1178110 MtrunA17_Chr4g0063531 28.190 337 213 10 21 338 63 389 5.28e-29 116
Msa1178110 MtrunA17_Chr8g0378511 27.848 316 203 9 24 320 76 385 3.21e-27 111
Msa1178110 MtrunA17_Chr2g0285851 27.469 324 205 10 25 326 52 367 4.49e-24 102
Msa1178110 MtrunA17_Chr3g0122681 27.119 295 166 10 21 285 31 306 4.26e-23 99.0
Msa1178110 MtrunA17_Chr8g0377241 31.687 243 135 9 19 239 45 278 6.28e-23 98.6
Msa1178110 MtrunA17_Chr3g0129221 28.996 269 146 9 20 265 4 250 1.42e-21 94.4
Msa1178110 MtrunA17_Chr2g0278921 29.565 230 150 6 21 241 39 265 1.05e-19 90.1
Msa1178110 MtrunA17_Chr3g0115401 22.126 348 188 12 21 288 39 383 1.26e-14 74.7
Msa1178110 MtrunA17_Chr7g0260051 25.321 312 186 12 25 310 4 294 1.13e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178110 AT3G61350.2 51.585 347 148 5 21 352 17 358 1.14e-118 347
Msa1178110 AT3G61350.1 51.585 347 148 5 21 352 17 358 1.14e-118 347
Msa1178110 AT1G55270.1 28.840 319 200 9 24 322 77 388 5.51e-28 114
Msa1178110 AT2G24540.1 24.796 367 241 11 12 352 15 372 1.83e-25 105
Msa1178110 AT1G67480.3 28.013 307 180 12 3 286 23 311 1.28e-19 89.4
Msa1178110 AT1G67480.1 28.013 307 180 12 3 286 23 311 1.28e-19 89.4
Msa1178110 AT1G67480.2 28.013 307 180 12 3 286 23 311 1.28e-19 89.4
Msa1178110 AT1G30090.1 25.000 332 213 13 16 320 43 365 5.70e-19 87.8
Msa1178110 AT1G22040.1 29.796 245 145 8 9 241 32 261 2.18e-17 83.6
Msa1178110 AT4G39590.1 25.000 340 208 8 6 309 18 346 5.06e-17 82.0
Msa1178110 AT1G27420.1 23.693 287 183 9 20 282 5 279 2.40e-15 76.6
Msa1178110 AT1G55270.2 26.394 269 171 9 74 322 1 262 6.24e-15 75.1
Msa1178110 AT2G21950.1 26.667 270 166 11 18 265 13 272 2.38e-13 70.9
Msa1178110 AT2G29830.1 22.714 339 213 14 7 312 9 331 2.69e-13 70.9
Msa1178110 AT3G63220.1 22.785 316 189 12 25 310 4 294 1.34e-12 68.6
Msa1178110 AT3G63220.3 22.785 316 189 12 25 310 11 301 1.42e-12 68.6
Msa1178110 AT3G63220.2 22.785 316 189 12 25 310 11 301 1.42e-12 68.6
Msa1178110 AT4G39240.1 28.685 251 146 11 29 259 37 274 2.33e-12 67.8
Msa1178110 AT2G29780.2 24.382 283 169 11 11 265 30 295 1.00e-11 65.9
Msa1178110 AT1G16250.2 27.320 194 108 8 25 192 8 194 2.69e-11 64.7
Msa1178110 AT1G16250.1 27.320 194 108 8 25 192 8 194 2.69e-11 64.7

Find 91 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAATAAGCTCTTCTTAT+TGG 0.156806 8_1:-10752704 Msa1178110:CDS
TCAATTTCGGGAACTATATT+AGG 0.164167 8_1:+10751108 None:intergenic
GGTAAAAGCATTTATATTAT+TGG 0.186633 8_1:-10750793 Msa1178110:CDS
TGCTTTGTGCAGGGATAAAT+TGG 0.190481 8_1:-10752839 Msa1178110:CDS
ACTATTGAATCTTCAATTTC+GGG 0.198008 8_1:+10751096 None:intergenic
GCAGACACTGACATGGTTTC+AGG 0.199265 8_1:-10750976 Msa1178110:CDS
AACTATTGAATCTTCAATTT+CGG 0.215275 8_1:+10751095 None:intergenic
TGTTGGTGATATTGGAAATA+TGG 0.261504 8_1:-10750743 Msa1178110:CDS
AAATATGGGAAGGGCGATAC+TGG 0.279707 8_1:-10750728 Msa1178110:CDS
GGAAATAAGCTCTTCTTATT+GGG 0.298222 8_1:-10752703 Msa1178110:CDS
TCATGTTTACTGTTACGTTT+TGG 0.309221 8_1:-10752815 Msa1178110:CDS
GTTGTTGATGTTGGTGATAT+TGG 0.315849 8_1:-10750751 Msa1178110:CDS
ACCAACTGCAACAAGTTTGC+AGG 0.334342 8_1:+10750813 None:intergenic
AGCATTTATATTATTGGAAA+AGG 0.341860 8_1:-10750787 Msa1178110:CDS
ATTCAAGTGATCCTCATTCT+TGG 0.348607 8_1:-10751176 Msa1178110:CDS
TGTTGCCATGTGCCATTTGA+TGG 0.360250 8_1:+10751000 None:intergenic
CTCTTCTTATTGGGTGGTTG+TGG 0.364026 8_1:-10752694 Msa1178110:CDS
GCATACACATGAGGTGTTAA+AGG 0.366134 8_1:+10751036 None:intergenic
AATTGAAGATTCAATAGTTA+TGG 0.374204 8_1:-10751091 Msa1178110:CDS
TTGTGATCAGAGACTAATTT+CGG 0.379853 8_1:+10750694 None:intergenic
GTCACAATTGGTGACAGGTT+TGG 0.396360 8_1:+10750504 None:intergenic
CTCGAAAAGATGGAGGGACT+TGG 0.398078 8_1:-10752923 Msa1178110:CDS
TCTTATTGGGTGGTTGTGGC+TGG 0.404375 8_1:-10752690 Msa1178110:CDS
ACATTTGATCCTTCCACAAA+TGG 0.418127 8_1:-10751150 Msa1178110:CDS
AACCCCATGAATGAGCTTCC+AGG 0.418653 8_1:+10752771 None:intergenic
GAACTCTGATCCAAAACAAA+AGG 0.430781 8_1:+10750919 None:intergenic
TTCAAGTGATCCTCATTCTT+GGG 0.430876 8_1:-10751175 Msa1178110:CDS
AAATCCTGGAAGCTCATTCA+TGG 0.431377 8_1:-10752775 Msa1178110:CDS
AATAATACTCCACTGATTTG+TGG 0.437163 8_1:-10753018 Msa1178110:CDS
AGAGAGACGCGAGTGGATAC+TGG 0.442798 8_1:-10750869 Msa1178110:CDS
CACAAAAGAGAAATATCATC+TGG 0.445413 8_1:+10752991 None:intergenic
GCATGGGACATTGTCACAAT+TGG 0.459141 8_1:+10750492 None:intergenic
AGCACTGTGGTTGTTGATGT+TGG 0.464649 8_1:-10750760 Msa1178110:CDS
TGAAGGCTGTCTCGAAAAGA+TGG 0.470081 8_1:-10752933 Msa1178110:CDS
TGGATCAGAGTTCGGGTACT+AGG 0.474624 8_1:-10750909 Msa1178110:CDS
GTTGGTGATATTGGAAATAT+GGG 0.477547 8_1:-10750742 Msa1178110:CDS
CTATATGCTATTGGTGGCAT+AGG 0.479990 8_1:-10751204 Msa1178110:CDS
GCATTTATATTATTGGAAAA+GGG 0.482758 8_1:-10750786 Msa1178110:CDS
GTGAGATGTCCAACCATTTG+TGG 0.487502 8_1:+10751137 None:intergenic
TTCCACCTCACGTCATGAAA+AGG 0.490506 8_1:-10752750 Msa1178110:CDS
CATGGATCTATGCTTTGTGC+AGG 0.492337 8_1:-10752849 Msa1178110:CDS
CAGACACTGACATGGTTTCA+GGG 0.496188 8_1:-10750975 Msa1178110:CDS
CCATCGTCTAAATGCTCCAT+TGG 0.502817 8_1:+10753081 None:intergenic
AGTTCCTAGAAAATATCATT+CGG 0.505984 8_1:-10752959 Msa1178110:CDS
GTTGTATACGATCCATCAAA+TGG 0.507083 8_1:-10751012 Msa1178110:CDS
CGTCATGAAAAGGAAAGGAA+TGG 0.514213 8_1:-10752740 Msa1178110:CDS
TTGATCCTTCCACAAATGGT+TGG 0.514537 8_1:-10751146 Msa1178110:CDS
CTACCTCGTCAAGAAAATCC+TGG 0.524735 8_1:-10752789 Msa1178110:CDS
CCCTGCAAACTTGTTGCAGT+TGG 0.525074 8_1:-10750814 Msa1178110:CDS
ACATTGTCACAATTGGTGAC+AGG 0.528710 8_1:+10750499 None:intergenic
AATAAGCTCTTCTTATTGGG+TGG 0.535177 8_1:-10752700 Msa1178110:CDS
TTGTCATTTGTGAACAATGA+AGG 0.540036 8_1:+10750388 None:intergenic
AATCCTGGAAGCTCATTCAT+GGG 0.540754 8_1:-10752774 Msa1178110:CDS
GTCATGAAAAGGAAAGGAAT+GGG 0.545551 8_1:-10752739 Msa1178110:CDS
CTACTTTGCTTGTGAAGCAA+TGG 0.547084 8_1:-10751235 Msa1178110:CDS
AACTCTGATCCAAAACAAAA+GGG 0.547129 8_1:+10750920 None:intergenic
CCAACTGCAACAAGTTTGCA+GGG 0.547956 8_1:+10750814 None:intergenic
AATATGGGAAGGGCGATACT+GGG 0.556784 8_1:-10750727 Msa1178110:CDS
GTGATATTGGAAATATGGGA+AGG 0.573342 8_1:-10750738 Msa1178110:CDS
AAAGAGAAATATCATCTGGA+AGG 0.578717 8_1:+10752995 None:intergenic
ACTTGGTTTGCAGCGAAGAG+TGG 0.580873 8_1:-10752906 Msa1178110:CDS
AGCATAAACTTGATGAGACA+TGG 0.581062 8_1:-10752867 Msa1178110:CDS
GAAGATTCAATAGTTATGGA+CGG 0.582095 8_1:-10751087 Msa1178110:CDS
ATTCCGTTGACAACAACTGC+AGG 0.584997 8_1:+10750943 None:intergenic
GGCTGTCTCGAAAAGATGGA+GGG 0.589666 8_1:-10752929 Msa1178110:CDS
TCAAATGTATCCCAAGAATG+AGG 0.590287 8_1:+10751165 None:intergenic
CAGGGTGGTCTTGTAAGCAA+CGG 0.599662 8_1:+10750832 None:intergenic
GACATGGTTTCAGGGTGGAG+AGG 0.607476 8_1:-10750967 Msa1178110:CDS
GGTCCTGCAGTTGTTGTCAA+CGG 0.619586 8_1:-10750946 Msa1178110:CDS
TCTGGAAGGCCACAAATCAG+TGG 0.621422 8_1:+10753009 None:intergenic
CCTCACGTCATGAAAAGGAA+AGG 0.622753 8_1:-10752745 Msa1178110:CDS
CGGGTACTAGGTTGACGATG+TGG 0.627913 8_1:-10750897 Msa1178110:CDS
TGATATTGGAAATATGGGAA+GGG 0.630143 8_1:-10750737 Msa1178110:CDS
GATGTCCAACCATTTGTGGA+AGG 0.636239 8_1:+10751141 None:intergenic
GCAACATGCAGACACTGACA+TGG 0.637395 8_1:-10750983 Msa1178110:CDS
AGGCTGTCTCGAAAAGATGG+AGG 0.640959 8_1:-10752930 Msa1178110:CDS
ATGGATCTATGCTTTGTGCA+GGG 0.650304 8_1:-10752848 Msa1178110:CDS
TCATTTGTGAACAATGAAGG+TGG 0.660029 8_1:+10750391 None:intergenic
TGGAAAAGGGCTTAGCACTG+TGG 0.661995 8_1:-10750773 Msa1178110:CDS
CCAATGGAGCATTTAGACGA+TGG 0.664725 8_1:-10753081 Msa1178110:CDS
TATACAACGGCATACACATG+AGG 0.672079 8_1:+10751027 None:intergenic
ATCCTGGAAGCTCATTCATG+GGG 0.677577 8_1:-10752773 Msa1178110:CDS
GGCATAAAGAGAGACGCGAG+TGG 0.682691 8_1:-10750876 Msa1178110:CDS
ACGATCCATCAAATGGCACA+TGG 0.684559 8_1:-10751005 Msa1178110:CDS
TGTTGAGGCACATAGATGTG+TGG 0.692330 8_1:-10750418 Msa1178110:three_prime_UTR
AGACGCGAGTGGATACTGGT+CGG 0.708143 8_1:-10750865 Msa1178110:CDS
GGCAAAATATACATCCGATG+TGG 0.708393 8_1:-10751066 Msa1178110:CDS
ATTTGATGGATCGTATACAA+CGG 0.723109 8_1:+10751014 None:intergenic
TTAAAGGAGATTTACCACAT+CGG 0.724075 8_1:+10751052 None:intergenic
ACACTGACATGGTTTCAGGG+TGG 0.743053 8_1:-10750972 Msa1178110:CDS
ACTGCAACAAGTTTGCAGGG+TGG 0.781995 8_1:+10750817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATATTGTAAAAGAAAA+TGG + chr8_1:10750941-10750960 None:intergenic 15.0%
!! TTTACTTGGAAATAAATATT+TGG - chr8_1:10751165-10751184 Msa1178110:CDS 15.0%
!! TGAATGAAAATTGAAAATAA+GGG - chr8_1:10751205-10751224 Msa1178110:CDS 15.0%
!!! TTTGTATGATGATTTTATTA+AGG - chr8_1:10752872-10752891 Msa1178110:CDS 15.0%
!!! AAAACAGATGTAACATTTTT+CGG - chr8_1:10750960-10750979 Msa1178110:CDS 20.0%
!!! GATTTTCATAAACAATGTTT+TGG + chr8_1:10751000-10751019 None:intergenic 20.0%
!!! ATTCATTTTAAATTGCTAAC+AGG + chr8_1:10751090-10751109 None:intergenic 20.0%
!!! AAATGTTATTTGAGTAAACA+TGG - chr8_1:10751133-10751152 Msa1178110:CDS 20.0%
!! GTGAATGAAAATTGAAAATA+AGG - chr8_1:10751204-10751223 Msa1178110:CDS 20.0%
!! ATAAATATGAAAGGAACAAA+TGG + chr8_1:10751318-10751337 None:intergenic 20.0%
!! ATATTTAACTAGCACAAAAA+AGG + chr8_1:10751589-10751608 None:intergenic 20.0%
!! TTAACTATTTACTATCTGTT+TGG - chr8_1:10751860-10751879 Msa1178110:intron 20.0%
!! TAACTATTTACTATCTGTTT+GGG - chr8_1:10751861-10751880 Msa1178110:intron 20.0%
!! ATGATTCTTATATTACAGTA+GGG + chr8_1:10752151-10752170 None:intergenic 20.0%
!! AACTATTGAATCTTCAATTT+CGG + chr8_1:10752341-10752360 None:intergenic 20.0%
!! AATTGAAGATTCAATAGTTA+TGG - chr8_1:10752342-10752361 Msa1178110:intron 20.0%
!!! GGTAAAAGCATTTATATTAT+TGG - chr8_1:10752640-10752659 Msa1178110:CDS 20.0%
!! AGCATTTATATTATTGGAAA+AGG - chr8_1:10752646-10752665 Msa1178110:CDS 20.0%
!! GCATTTATATTATTGGAAAA+GGG - chr8_1:10752647-10752666 Msa1178110:CDS 20.0%
!! AAAAAGTAGAAAATTTGCAT+GGG + chr8_1:10752960-10752979 None:intergenic 20.0%
!! TAAAAAGTAGAAAATTTGCA+TGG + chr8_1:10752961-10752980 None:intergenic 20.0%
! AGTTCCTAGAAAATATCATT+CGG - chr8_1:10750474-10750493 Msa1178110:three_prime_UTR 25.0%
!! AAAACCGAATGATATTTTCT+AGG + chr8_1:10750481-10750500 None:intergenic 25.0%
!!! AAAATATCATTCGGTTTTGA+AGG - chr8_1:10750483-10750502 Msa1178110:three_prime_UTR 25.0%
! TATTGTAAAAGAAAATGGTG+AGG + chr8_1:10750936-10750955 None:intergenic 25.0%
!! TGATTTTCCTTCTCTTTTTT+TGG - chr8_1:10751532-10751551 Msa1178110:intron 25.0%
!! GATTTTCCTTCTCTTTTTTT+GGG - chr8_1:10751533-10751552 Msa1178110:intron 25.0%
!!! ATTTTCCTTCTCTTTTTTTG+GGG - chr8_1:10751534-10751553 Msa1178110:intron 25.0%
! TTGGCAAAATATCATTAATG+AGG - chr8_1:10751677-10751696 Msa1178110:intron 25.0%
!! GTTTTATATTACTACTATCG+AGG - chr8_1:10751741-10751760 Msa1178110:intron 25.0%
! AAGATGAATTAGAAAAAGAC+AGG + chr8_1:10751798-10751817 None:intergenic 25.0%
!!! GTATTGATTAAGTGTGTTTT+TGG + chr8_1:10752010-10752029 None:intergenic 25.0%
!!! ATGCAATTTTAGCTTTGAAT+AGG + chr8_1:10752106-10752125 None:intergenic 25.0%
! TGATTCTTATATTACAGTAG+GGG + chr8_1:10752150-10752169 None:intergenic 25.0%
! CATGATTCTTATATTACAGT+AGG + chr8_1:10752152-10752171 None:intergenic 25.0%
! ACTATTGAATCTTCAATTTC+GGG + chr8_1:10752340-10752359 None:intergenic 25.0%
!! AATAATACTCCACTGATTTG+TGG - chr8_1:10750415-10750434 Msa1178110:three_prime_UTR 30.0%
AAAGAGAAATATCATCTGGA+AGG + chr8_1:10750441-10750460 None:intergenic 30.0%
CACAAAAGAGAAATATCATC+TGG + chr8_1:10750445-10750464 None:intergenic 30.0%
! TGATATTTCTCTTTTGTGTC+TGG - chr8_1:10750447-10750466 Msa1178110:three_prime_UTR 30.0%
! TCATGTTTACTGTTACGTTT+TGG - chr8_1:10750618-10750637 Msa1178110:three_prime_UTR 30.0%
GGAAATAAGCTCTTCTTATT+GGG - chr8_1:10750730-10750749 Msa1178110:CDS 30.0%
TGATTAACTTAGCTTCTGAA+GGG + chr8_1:10750872-10750891 None:intergenic 30.0%
GAAAATGGTGAGGAAAATAT+AGG + chr8_1:10750926-10750945 None:intergenic 30.0%
GAAAATCTATTCTTCCTAAC+TGG - chr8_1:10751013-10751032 Msa1178110:CDS 30.0%
AATTGTGATAGAGAGAACAT+GGG + chr8_1:10751042-10751061 None:intergenic 30.0%
TAATTGTGATAGAGAGAACA+TGG + chr8_1:10751043-10751062 None:intergenic 30.0%
!! CATGGTCTTAGTATTTTACT+TGG - chr8_1:10751151-10751170 Msa1178110:CDS 30.0%
TTCATTCACAGTAAAACTTG+TGG + chr8_1:10751193-10751212 None:intergenic 30.0%
AAAATAAGGGTAGTGAGAAT+AGG - chr8_1:10751218-10751237 Msa1178110:CDS 30.0%
AAATAAGGGTAGTGAGAATA+GGG - chr8_1:10751219-10751238 Msa1178110:CDS 30.0%
AATATGAAAGGAACAAATGG+AGG + chr8_1:10751315-10751334 None:intergenic 30.0%
ATTTGATCTTTCACATGCTT+AGG - chr8_1:10751452-10751471 Msa1178110:intron 30.0%
GTTCCTTAACTTCAAAAATG+TGG - chr8_1:10751495-10751514 Msa1178110:intron 30.0%
!!! GTACCACATTTTTGAAGTTA+AGG + chr8_1:10751501-10751520 None:intergenic 30.0%
!!! TTTTCCTTCTCTTTTTTTGG+GGG - chr8_1:10751535-10751554 Msa1178110:intron 30.0%
ACATGCTTGTATATTTGACT+TGG - chr8_1:10751658-10751677 Msa1178110:intron 30.0%
ATTACTACTATCGAGGAATA+AGG - chr8_1:10751748-10751767 Msa1178110:intron 30.0%
TATTTACTATCTGTTTGGGT+TGG - chr8_1:10751865-10751884 Msa1178110:intron 30.0%
!!! GATTAAGTGTGTTTTTGGAA+TGG + chr8_1:10752005-10752024 None:intergenic 30.0%
CACTTAATCAATACCTACTT+TGG - chr8_1:10752016-10752035 Msa1178110:intron 30.0%
!!! TTCCTTCACATTTTTTTTCC+AGG - chr8_1:10752173-10752192 Msa1178110:intron 30.0%
GACGAAAAACTATATGCTAT+TGG - chr8_1:10752220-10752239 Msa1178110:intron 30.0%
GAAAAACTATATGCTATTGG+TGG - chr8_1:10752223-10752242 Msa1178110:intron 30.0%
TCAATTTCGGGAACTATATT+AGG + chr8_1:10752328-10752347 None:intergenic 30.0%
GAAGATTCAATAGTTATGGA+CGG - chr8_1:10752346-10752365 Msa1178110:intron 30.0%
TTAAAGGAGATTTACCACAT+CGG + chr8_1:10752384-10752403 None:intergenic 30.0%
! ATTTGATGGATCGTATACAA+CGG + chr8_1:10752422-10752441 None:intergenic 30.0%
AACTCTGATCCAAAACAAAA+GGG + chr8_1:10752516-10752535 None:intergenic 30.0%
!!! TTTTGTTTTGGATCAGAGTT+CGG - chr8_1:10752516-10752535 Msa1178110:intron 30.0%
!! TGTTGGTGATATTGGAAATA+TGG - chr8_1:10752690-10752709 Msa1178110:CDS 30.0%
!! GTTGGTGATATTGGAAATAT+GGG - chr8_1:10752691-10752710 Msa1178110:CDS 30.0%
TGATATTGGAAATATGGGAA+GGG - chr8_1:10752696-10752715 Msa1178110:CDS 30.0%
TTGTGATCAGAGACTAATTT+CGG + chr8_1:10752742-10752761 None:intergenic 30.0%
!! TGAGCAATTGATTTTTGTTG+AGG - chr8_1:10753000-10753019 Msa1178110:CDS 30.0%
! TTGTCATTTGTGAACAATGA+AGG + chr8_1:10753048-10753067 None:intergenic 30.0%
AGCATAAACTTGATGAGACA+TGG - chr8_1:10750566-10750585 Msa1178110:three_prime_UTR 35.0%
GTCATGAAAAGGAAAGGAAT+GGG - chr8_1:10750694-10750713 Msa1178110:CDS 35.0%
GGGAAATAAGCTCTTCTTAT+TGG - chr8_1:10750729-10750748 Msa1178110:CDS 35.0%
AATAAGCTCTTCTTATTGGG+TGG - chr8_1:10750733-10750752 Msa1178110:CDS 35.0%
TATTTACCTAGCAGTTGACA+AGG + chr8_1:10750836-10750855 None:intergenic 35.0%
GTGATTAACTTAGCTTCTGA+AGG + chr8_1:10750873-10750892 None:intergenic 35.0%
! GAAAAAGACAGGTGTGTTTT+GGG + chr8_1:10751787-10751806 None:intergenic 35.0%
! AGAAAAAGACAGGTGTGTTT+TGG + chr8_1:10751788-10751807 None:intergenic 35.0%
GCTTAATTCTTTCAAAACGC+CGG + chr8_1:10751983-10752002 None:intergenic 35.0%
CACCTGGAAAAAAAATGTGA+AGG + chr8_1:10752178-10752197 None:intergenic 35.0%
ATTCAAGTGATCCTCATTCT+TGG - chr8_1:10752257-10752276 Msa1178110:intron 35.0%
TTCAAGTGATCCTCATTCTT+GGG - chr8_1:10752258-10752277 Msa1178110:intron 35.0%
TCAAATGTATCCCAAGAATG+AGG + chr8_1:10752271-10752290 None:intergenic 35.0%
ACATTTGATCCTTCCACAAA+TGG - chr8_1:10752283-10752302 Msa1178110:intron 35.0%
GTTGTATACGATCCATCAAA+TGG - chr8_1:10752421-10752440 Msa1178110:intron 35.0%
GAACTCTGATCCAAAACAAA+AGG + chr8_1:10752517-10752536 None:intergenic 35.0%
!!! TTTGTTTTGGATCAGAGTTC+GGG - chr8_1:10752517-10752536 Msa1178110:intron 35.0%
!! GTTGTTGATGTTGGTGATAT+TGG - chr8_1:10752682-10752701 Msa1178110:CDS 35.0%
GTGATATTGGAAATATGGGA+AGG - chr8_1:10752695-10752714 Msa1178110:CDS 35.0%
TCATTTGTGAACAATGAAGG+TGG + chr8_1:10753045-10753064 None:intergenic 35.0%
ATGGATCTATGCTTTGTGCA+GGG - chr8_1:10750585-10750604 Msa1178110:three_prime_UTR 40.0%
TGCTTTGTGCAGGGATAAAT+TGG - chr8_1:10750594-10750613 Msa1178110:three_prime_UTR 40.0%
AAATCCTGGAAGCTCATTCA+TGG - chr8_1:10750658-10750677 Msa1178110:exon 40.0%
AATCCTGGAAGCTCATTCAT+GGG - chr8_1:10750659-10750678 Msa1178110:exon 40.0%
CGTCATGAAAAGGAAAGGAA+TGG - chr8_1:10750693-10750712 Msa1178110:CDS 40.0%
!!! AGGAATGGGTTTTGAAGCTT+TGG - chr8_1:10750708-10750727 Msa1178110:CDS 40.0%
!!! GGAATGGGTTTTGAAGCTTT+GGG - chr8_1:10750709-10750728 Msa1178110:CDS 40.0%
ACAATGCTTCTTTGAACTCG+TGG - chr8_1:10750797-10750816 Msa1178110:CDS 40.0%
CAATGCTTCTTTGAACTCGT+GGG - chr8_1:10750798-10750817 Msa1178110:CDS 40.0%
CCTATGTAGAATGCAACTGT+AGG + chr8_1:10751403-10751422 None:intergenic 40.0%
CCTACAGTTGCATTCTACAT+AGG - chr8_1:10751400-10751419 Msa1178110:intron 40.0%
ACAGTTGCATTCTACATAGG+CGG - chr8_1:10751403-10751422 Msa1178110:intron 40.0%
AACTCCCCCAAAAAAAGAGA+AGG + chr8_1:10751542-10751561 None:intergenic 40.0%
!!! TTCTCTTTTTTTGGGGGAGT+TGG - chr8_1:10751541-10751560 Msa1178110:intron 40.0%
!!! CATCTTTTTTGAAGCCTGCT+AGG - chr8_1:10751812-10751831 Msa1178110:intron 40.0%
AAAACTTCCACTTTCCTAGC+AGG + chr8_1:10751829-10751848 None:intergenic 40.0%
!! TTACTATCTGTTTGGGTTGG+CGG - chr8_1:10751868-10751887 Msa1178110:intron 40.0%
AAAGTAGCTCCTTGAAACGT+GGG + chr8_1:10751907-10751926 None:intergenic 40.0%
AATTCTTTCAAAACGCCGGT+AGG + chr8_1:10751979-10751998 None:intergenic 40.0%
! CCATGATAACAAGAGAGCAT+GGG + chr8_1:10752043-10752062 None:intergenic 40.0%
ACCATGATAACAAGAGAGCA+TGG + chr8_1:10752044-10752063 None:intergenic 40.0%
CTACTTTGCTTGTGAAGCAA+TGG - chr8_1:10752198-10752217 Msa1178110:intron 40.0%
! CTATATGCTATTGGTGGCAT+AGG - chr8_1:10752229-10752248 Msa1178110:intron 40.0%
TTGATCCTTCCACAAATGGT+TGG - chr8_1:10752287-10752306 Msa1178110:intron 40.0%
GGCAAAATATACATCCGATG+TGG - chr8_1:10752367-10752386 Msa1178110:intron 40.0%
! GCATACACATGAGGTGTTAA+AGG + chr8_1:10752400-10752419 None:intergenic 40.0%
TATACAACGGCATACACATG+AGG + chr8_1:10752409-10752428 None:intergenic 40.0%
!! CAACGGAATCCCTTTTGTTT+TGG - chr8_1:10752504-10752523 Msa1178110:intron 40.0%
! ACATTGTCACAATTGGTGAC+AGG + chr8_1:10752937-10752956 None:intergenic 40.0%
TGAAGGCTGTCTCGAAAAGA+TGG - chr8_1:10750500-10750519 Msa1178110:three_prime_UTR 45.0%
CATGGATCTATGCTTTGTGC+AGG - chr8_1:10750584-10750603 Msa1178110:three_prime_UTR 45.0%
! CAGGATTTTCTTGACGAGGT+AGG + chr8_1:10750646-10750665 None:intergenic 45.0%
CTACCTCGTCAAGAAAATCC+TGG - chr8_1:10750644-10750663 Msa1178110:exon 45.0%
! CTTCCAGGATTTTCTTGACG+AGG + chr8_1:10750650-10750669 None:intergenic 45.0%
ATCCTGGAAGCTCATTCATG+GGG - chr8_1:10750660-10750679 Msa1178110:exon 45.0%
TTCCACCTCACGTCATGAAA+AGG - chr8_1:10750683-10750702 Msa1178110:CDS 45.0%
! TTCCTTTTCATGACGTGAGG+TGG + chr8_1:10750688-10750707 None:intergenic 45.0%
! CCTTTCCTTTTCATGACGTG+AGG + chr8_1:10750691-10750710 None:intergenic 45.0%
CCTCACGTCATGAAAAGGAA+AGG - chr8_1:10750688-10750707 Msa1178110:CDS 45.0%
CTCTTCTTATTGGGTGGTTG+TGG - chr8_1:10750739-10750758 Msa1178110:CDS 45.0%
GGTAGTGAGAATAGGGAAGA+AGG - chr8_1:10751226-10751245 Msa1178110:CDS 45.0%
GAAAGGAACAAATGGAGGAG+TGG + chr8_1:10751310-10751329 None:intergenic 45.0%
! TTTGAAGCCTGCTAGGAAAG+TGG - chr8_1:10751819-10751838 Msa1178110:intron 45.0%
AAAGCCAAACCCACGTTTCA+AGG - chr8_1:10751895-10751914 Msa1178110:intron 45.0%
GAAAGTAGCTCCTTGAAACG+TGG + chr8_1:10751908-10751927 None:intergenic 45.0%
! GTTTCAAGGAGCTACTTTCG+TGG - chr8_1:10751909-10751928 Msa1178110:intron 45.0%
!!! TTCTAGCTTTTGCTGCAACG+TGG - chr8_1:10751950-10751969 Msa1178110:intron 45.0%
! CCCATGCTCTCTTGTTATCA+TGG - chr8_1:10752040-10752059 Msa1178110:intron 45.0%
TTCACAAGCAAAGTAGCACC+TGG + chr8_1:10752194-10752213 None:intergenic 45.0%
GATGTCCAACCATTTGTGGA+AGG + chr8_1:10752295-10752314 None:intergenic 45.0%
GTGAGATGTCCAACCATTTG+TGG + chr8_1:10752299-10752318 None:intergenic 45.0%
ACGATCCATCAAATGGCACA+TGG - chr8_1:10752428-10752447 Msa1178110:intron 45.0%
!! TGTTGCCATGTGCCATTTGA+TGG + chr8_1:10752436-10752455 None:intergenic 45.0%
CAGACACTGACATGGTTTCA+GGG - chr8_1:10752458-10752477 Msa1178110:intron 45.0%
ATTCCGTTGACAACAACTGC+AGG + chr8_1:10752493-10752512 None:intergenic 45.0%
CCAACTGCAACAAGTTTGCA+GGG + chr8_1:10752622-10752641 None:intergenic 45.0%
ACCAACTGCAACAAGTTTGC+AGG + chr8_1:10752623-10752642 None:intergenic 45.0%
AGCACTGTGGTTGTTGATGT+TGG - chr8_1:10752673-10752692 Msa1178110:CDS 45.0%
AAATATGGGAAGGGCGATAC+TGG - chr8_1:10752705-10752724 Msa1178110:CDS 45.0%
AATATGGGAAGGGCGATACT+GGG - chr8_1:10752706-10752725 Msa1178110:CDS 45.0%
! GTCACAATTGGTGACAGGTT+TGG + chr8_1:10752932-10752951 None:intergenic 45.0%
GCATGGGACATTGTCACAAT+TGG + chr8_1:10752944-10752963 None:intergenic 45.0%
TGTTGAGGCACATAGATGTG+TGG - chr8_1:10753015-10753034 Msa1178110:CDS 45.0%
!! TAAAAAAATATAAATATGAA+AGG + chr8_1:10751327-10751346 None:intergenic 5.0%
TCTGGAAGGCCACAAATCAG+TGG + chr8_1:10750427-10750446 None:intergenic 50.0%
AGGCTGTCTCGAAAAGATGG+AGG - chr8_1:10750503-10750522 Msa1178110:three_prime_UTR 50.0%
GGCTGTCTCGAAAAGATGGA+GGG - chr8_1:10750504-10750523 Msa1178110:three_prime_UTR 50.0%
CTCGAAAAGATGGAGGGACT+TGG - chr8_1:10750510-10750529 Msa1178110:three_prime_UTR 50.0%
!! ACTTGGTTTGCAGCGAAGAG+TGG - chr8_1:10750527-10750546 Msa1178110:three_prime_UTR 50.0%
AACCCCATGAATGAGCTTCC+AGG + chr8_1:10750665-10750684 None:intergenic 50.0%
TCTTATTGGGTGGTTGTGGC+TGG - chr8_1:10750743-10750762 Msa1178110:CDS 50.0%
CTGCTTCCTTGTCAACTGCT+AGG - chr8_1:10750827-10750846 Msa1178110:CDS 50.0%
! CTTCTGAAGGGAAAGTCGTG+AGG + chr8_1:10750860-10750879 None:intergenic 50.0%
GAGAACATGGGAAGCCAGTT+AGG + chr8_1:10751030-10751049 None:intergenic 50.0%
TGGAGGAGTGGAAGTTGACA+AGG + chr8_1:10751298-10751317 None:intergenic 50.0%
!! AGGTGTGTTTTGGGCGTGAA+GGG + chr8_1:10751778-10751797 None:intergenic 50.0%
!! TATCTGTTTGGGTTGGCGGT+GGG - chr8_1:10751872-10751891 Msa1178110:intron 50.0%
AGCTCCTTGAAACGTGGGTT+TGG + chr8_1:10751902-10751921 None:intergenic 50.0%
! AGAGAGCATGGGACCAAAGT+AGG + chr8_1:10752032-10752051 None:intergenic 50.0%
GCAACATGCAGACACTGACA+TGG - chr8_1:10752450-10752469 Msa1178110:intron 50.0%
GCAGACACTGACATGGTTTC+AGG - chr8_1:10752457-10752476 Msa1178110:intron 50.0%
ACACTGACATGGTTTCAGGG+TGG - chr8_1:10752461-10752480 Msa1178110:intron 50.0%
GGTCCTGCAGTTGTTGTCAA+CGG - chr8_1:10752487-10752506 Msa1178110:intron 50.0%
TGGATCAGAGTTCGGGTACT+AGG - chr8_1:10752524-10752543 Msa1178110:intron 50.0%
!! CAGGGTGGTCTTGTAAGCAA+CGG + chr8_1:10752604-10752623 None:intergenic 50.0%
ACTGCAACAAGTTTGCAGGG+TGG + chr8_1:10752619-10752638 None:intergenic 50.0%
!! CCCTGCAAACTTGTTGCAGT+TGG - chr8_1:10752619-10752638 Msa1178110:intron 50.0%
TGGAAAAGGGCTTAGCACTG+TGG - chr8_1:10752660-10752679 Msa1178110:CDS 50.0%
!! CAGGTGTGTTTTGGGCGTGA+AGG + chr8_1:10751779-10751798 None:intergenic 55.0%
!! CTATCTGTTTGGGTTGGCGG+TGG - chr8_1:10751871-10751890 Msa1178110:intron 55.0%
GCTGCAACGTGGTTTCCTAC+CGG - chr8_1:10751961-10751980 Msa1178110:intron 55.0%
GACATGGTTTCAGGGTGGAG+AGG - chr8_1:10752466-10752485 Msa1178110:intron 55.0%
! CGGGTACTAGGTTGACGATG+TGG - chr8_1:10752536-10752555 Msa1178110:intron 55.0%
GGCATAAAGAGAGACGCGAG+TGG - chr8_1:10752557-10752576 Msa1178110:intron 55.0%
AGAGAGACGCGAGTGGATAC+TGG - chr8_1:10752564-10752583 Msa1178110:intron 55.0%
AGACGCGAGTGGATACTGGT+CGG - chr8_1:10752568-10752587 Msa1178110:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10750355 10753100 10750355 ID=Msa1178110;Name=Msa1178110
chr8_1 mRNA 10750355 10753100 10750355 ID=Msa1178110-mRNA-1;Parent=Msa1178110;Name=Msa1178110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|1|0.5|2|308|352
chr8_1 exon 10750355 10751260 10750355 ID=Msa1178110-mRNA-1:exon:3737;Parent=Msa1178110-mRNA-1
chr8_1 exon 10752640 10753100 10752640 ID=Msa1178110-mRNA-1:exon:3736;Parent=Msa1178110-mRNA-1
chr8_1 CDS 10752640 10753100 10752640 ID=Msa1178110-mRNA-1:cds;Parent=Msa1178110-mRNA-1
chr8_1 CDS 10750663 10751260 10750663 ID=Msa1178110-mRNA-1:cds;Parent=Msa1178110-mRNA-1
chr8_1 three_prime_UTR 10750355 10750662 10750355 ID=Msa1178110-mRNA-1:three_prime_utr;Parent=Msa1178110-mRNA-1
Gene Sequence

>Msa1178110

ATGGAGCATTTAGACGATGGCGAAGCATCAGAAAATAATGTTGATGAAGTAGAAGTCACTAATAATACTCCACTGATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCGGTTTTGAAGGCTGTCTCGAAAAGATGGAGGGACTTGGTTTGCAGCGAAGAGTGGCTTTATTATCGTAGAAAGCATAAACTTGATGAGACATGGATCTATGCTTTGTGCAGGGATAAATTGGATCATGTTTACTGTTACGTTTTGGATCCTACCTCGTCAAGAAAATCCTGGAAGCTCATTCATGGGGTTCCACCTCACGTCATGAAAAGGAAAGGAATGGGTTTTGAAGCTTTGGGAAATAAGCTCTTCTTATTGGGTGGTTGTGGCTGGTCTGAAGATGCTACTGAAGAAGTTTATTCATACAATGCTTCTTTGAACTCGTGCTACTTTGCTTGTGAAGCAATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCTTGGGATACATTTGATCCTTCCACAAATGGTTGGACATCTCACAGAGATCCTAATATAGTTCCCGAAATTGAAGATTCAATAGTTATGGACGGCAAAATATACATCCGATGTGGTAAATCTCCTTTAACACCTCATGTGTATGCCGTTGTATACGATCCATCAAATGGCACATGGCAACATGCAGACACTGACATGGTTTCAGGGTGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCCTTTTGTTTTGGATCAGAGTTCGGGTACTAGGTTGACGATGTGGCATAAAGAGAGACGCGAGTGGATACTGGTCGGTAAGTTGTCACCGTTGCTTACAAGACCACCCTGCAAACTTGTTGCAGTTGGTAAAAGCATTTATATTATTGGAAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGCGATACTGGGTTCTTCTATACCGAAATTAGTCTCTGATCACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA

Protein sequence

>Msa1178110

MEHLDDGEASENNVDEVEVTNNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLYYRRKHKLDETWIYALCRDKLDHVYCYVLDPTSSRKSWKLIHGVPPHVMKRKGMGFEALGNKLFLLGGCGWSEDATEEVYSYNASLNSCYFACEAMDEKLYAIGGIGSNSSDPHSWDTFDPSTNGWTSHRDPNIVPEIEDSIVMDGKIYIRCGKSPLTPHVYAVVYDPSNGTWQHADTDMVSGWRGPAVVVNGIPFVLDQSSGTRLTMWHKERREWILVGKLSPLLTRPPCKLVAVGKSIYIIGKGLSTVVVDVGDIGNMGRAILGSSIPKLVSDHNVISCKCLSI*