AlfalfaGEDB | Msa0945550

M. sativa cultivar zhongmu-4 / Msa0945550

KEGG: K02987|K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF08879.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945550	RHN80785.1	96.406	946	16	3	1	944	70	999	0.0	1876

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945550	sp\|Q9SSE9\|JMJ25_ARATH	35.393	534	269	11	392	904	412	890	1.20e-94	325
Msa0945550	sp\|Q9SSE9\|JMJ25_ARATH	35.429	175	94	3	198	367	155	315	1.37e-23	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945550	A0A396JX83	96.406	946	16	3	1	944	70	999	0.0	1876

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TFs/TRs:

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Gene ID	Type	Classification
Msa0945550	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0945550	0.813175	2.924336e-51	-8.615850e-47
Msa0001960	Msa0945550	0.801768	7.704649e-49	-8.615850e-47
Msa0002580	Msa0945550	0.807447	5.033516e-50	-8.615850e-47
Msa0036140	Msa0945550	0.812056	5.135985e-51	-8.615850e-47
Msa0080090	Msa0945550	0.895072	1.355796e-75	-8.615850e-47
Msa0115560	Msa0945550	0.807756	4.325815e-50	-8.615850e-47
Msa0172650	Msa0945550	0.996322	4.472683e-226	-8.615850e-47
Msa0175730	Msa0945550	0.806505	7.963891e-50	-8.615850e-47
Msa0188900	Msa0945550	0.800420	1.453320e-48	-8.615850e-47
Msa0189040	Msa0945550	0.813046	3.120213e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945550	MtrunA17_Chr1g0192011	96.406	946	16	3	1	944	70	999	0.0	1876
Msa0945550	MtrunA17_Chr7g0275771	38.267	831	394	18	185	917	127	936	0.0	554
Msa0945550	MtrunA17_Chr4g0075261	36.729	746	404	15	191	908	162	867	1.31e-152	472
Msa0945550	MtrunA17_Chr1g0211711	37.105	760	374	19	198	906	343	1049	1.86e-145	459
Msa0945550	MtrunA17_Chr5g0426961	35.615	789	387	16	177	906	107	833	1.10e-136	429
Msa0945550	MtrunA17_Chr1g0183311	35.471	764	411	14	198	906	144	880	1.38e-132	420
Msa0945550	MtrunA17_Chr2g0289121	33.865	753	400	14	189	914	147	828	8.61e-128	406
Msa0945550	MtrunA17_Chr2g0281051	32.478	779	444	20	195	912	204	961	4.27e-120	389
Msa0945550	MtrunA17_Chr1g0211661	34.286	700	364	14	192	848	219	865	3.90e-115	374
Msa0945550	MtrunA17_Chr1g0147021	34.992	643	329	15	77	676	749	1345	1.09e-106	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945550	AT1G09060.4	51.955	972	383	19	2	940	19	939	0.0	938
Msa0945550	AT1G09060.3	51.955	972	383	19	2	940	19	939	0.0	938
Msa0945550	AT1G09060.2	51.955	972	383	19	2	940	5	925	0.0	938
Msa0945550	AT1G09060.1	51.955	972	383	19	2	940	5	925	0.0	938
Msa0945550	AT4G00990.1	37.250	800	426	16	168	908	50	832	1.59e-171	521
Msa0945550	AT1G11950.1	36.644	745	376	13	198	910	193	873	1.80e-158	488
Msa0945550	AT1G11950.3	36.644	745	376	13	198	910	193	873	1.80e-158	488
Msa0945550	AT4G00990.3	36.182	749	396	18	168	854	50	778	1.53e-148	459
Msa0945550	AT1G62310.1	35.611	761	394	14	171	894	182	883	7.21e-148	461
Msa0945550	AT4G00990.2	35.946	740	398	16	168	848	50	772	3.44e-147	456

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Find 331 sgRNAs with CRISPR-Local

Find 713 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGAGGCTAGGCCC+TGG	0.533144	6_3:+24374620	Msa0945560:three_prime_UTR
AAAATAGCTCCACCATAAAG+AGG	0.531360	6_3:+24377798	None:intergenic
AAAATGCATTGGAAGGAATT+TGG	0.117264	6_3:-24377962	Msa0945550:CDS
AAACCATTGCAGTCAAATTA+GGG	0.411485	6_3:+24375140	Msa0945560:three_prime_UTR
AAAGACTGAGGCTAGGCCCT+GGG	0.545030	6_3:+24374621	Msa0945560:three_prime_UTR
AAAGATTCGACTATGGATCA+AGG	0.524675	6_3:-24378133	Msa0945550:CDS
AAATAAAATTTATATCCAGT+AGG	0.661536	6_3:+24374649	Msa0945560:three_prime_UTR
AAATACTTGCTTAACGATAA+TGG	0.238092	6_3:+24379617	None:intergenic
AAATATTGAAGCTGAAGGAT+TGG	0.523058	6_3:-24379270	Msa0945550:CDS
AAATGCATTGGAAGGAATTT+GGG	0.300110	6_3:-24377961	Msa0945550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTCTTATTCAGAGAGAA+TGG	-	chr6_3:24373502-24373521	Msa0945550:three_prime_UTR	30.0%
TCCAAATTAACATCAGAATC+GGG	+	chr6_3:24373725-24373744	Msa0945560:CDS	30.0%
TGTTCTGTTTGAAGAGAATT+GGG	-	chr6_3:24373955-24373974	Msa0945550:three_prime_UTR	30.0%
AGTCATATATTTAAGGACTG+AGG	+	chr6_3:24374093-24374112	Msa0945560:CDS	30.0%
CTTTCTTAATTCCAGTGATT+AGG	+	chr6_3:24374123-24374142	Msa0945560:intron	30.0%
TTAGTGAAGATACCTTCTTT+CGG	-	chr6_3:24374629-24374648	Msa0945550:three_prime_UTR	30.0%
ATCTTCTGAATTTCATCCAA+TGG	+	chr6_3:24374731-24374750	Msa0945560:three_prime_UTR	30.0%
ACGTAGTGATAATTCCATAA+AGG	-	chr6_3:24374793-24374812	Msa0945550:three_prime_UTR	30.0%
CAACTTCAAAACATTGTTCT+CGG	+	chr6_3:24375014-24375033	Msa0945560:three_prime_UTR	30.0%
GAAATAATGGTTTCTTTCAC+AGG	-	chr6_3:24375163-24375182	Msa0945550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	24373188	24382305	24373188	ID=Msa0945550;Name=Msa0945550
chr6_3	mRNA	24373188	24382305	24373188	ID=Msa0945550-mRNA-1;Parent=Msa0945550;Name=Msa0945550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=186\|0.93\|0.94\|1\|0.75\|0.64\|17\|1494\|944
chr6_3	exon	24373188	24373304	24373188	ID=Msa0945550-mRNA-1:exon:6976;Parent=Msa0945550-mRNA-1
chr6_3	exon	24373446	24373782	24373446	ID=Msa0945550-mRNA-1:exon:6975;Parent=Msa0945550-mRNA-1
chr6_3	exon	24373904	24374114	24373904	ID=Msa0945550-mRNA-1:exon:6974;Parent=Msa0945550-mRNA-1
chr6_3	exon	24374261	24375189	24374261	ID=Msa0945550-mRNA-1:exon:6973;Parent=Msa0945550-mRNA-1
chr6_3	exon	24375343	24375413	24375343	ID=Msa0945550-mRNA-1:exon:6972;Parent=Msa0945550-mRNA-1
chr6_3	exon	24375565	24375684	24375565	ID=Msa0945550-mRNA-1:exon:6971;Parent=Msa0945550-mRNA-1
chr6_3	exon	24376663	24376748	24376663	ID=Msa0945550-mRNA-1:exon:6970;Parent=Msa0945550-mRNA-1
chr6_3	exon	24377757	24377829	24377757	ID=Msa0945550-mRNA-1:exon:6969;Parent=Msa0945550-mRNA-1
chr6_3	exon	24377946	24378350	24377946	ID=Msa0945550-mRNA-1:exon:6968;Parent=Msa0945550-mRNA-1
chr6_3	exon	24379033	24379362	24379033	ID=Msa0945550-mRNA-1:exon:6967;Parent=Msa0945550-mRNA-1
chr6_3	exon	24379491	24380130	24379491	ID=Msa0945550-mRNA-1:exon:6966;Parent=Msa0945550-mRNA-1
chr6_3	exon	24380212	24380308	24380212	ID=Msa0945550-mRNA-1:exon:6965;Parent=Msa0945550-mRNA-1
chr6_3	exon	24380439	24380571	24380439	ID=Msa0945550-mRNA-1:exon:6964;Parent=Msa0945550-mRNA-1
chr6_3	exon	24380679	24380778	24380679	ID=Msa0945550-mRNA-1:exon:6963;Parent=Msa0945550-mRNA-1
chr6_3	exon	24380879	24381018	24380879	ID=Msa0945550-mRNA-1:exon:6962;Parent=Msa0945550-mRNA-1
chr6_3	exon	24381433	24381977	24381433	ID=Msa0945550-mRNA-1:exon:6961;Parent=Msa0945550-mRNA-1
chr6_3	exon	24382125	24382305	24382125	ID=Msa0945550-mRNA-1:exon:6960;Parent=Msa0945550-mRNA-1
chr6_3	five_prime_UTR	24382125	24382305	24382125	ID=Msa0945550-mRNA-1:five_prime_utr;Parent=Msa0945550-mRNA-1
chr6_3	five_prime_UTR	24381973	24381977	24381973	ID=Msa0945550-mRNA-1:five_prime_utr;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24381433	24381972	24381433	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24380879	24381018	24380879	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24380679	24380778	24380679	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24380439	24380571	24380439	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24380212	24380308	24380212	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24379491	24380130	24379491	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24379033	24379362	24379033	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24377946	24378350	24377946	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24377757	24377829	24377757	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24376663	24376748	24376663	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24375565	24375684	24375565	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24375343	24375413	24375343	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	CDS	24375090	24375189	24375090	ID=Msa0945550-mRNA-1:cds;Parent=Msa0945550-mRNA-1
chr6_3	three_prime_UTR	24374261	24375089	24374261	ID=Msa0945550-mRNA-1:three_prime_utr;Parent=Msa0945550-mRNA-1
chr6_3	three_prime_UTR	24373904	24374114	24373904	ID=Msa0945550-mRNA-1:three_prime_utr;Parent=Msa0945550-mRNA-1
chr6_3	three_prime_UTR	24373446	24373782	24373446	ID=Msa0945550-mRNA-1:three_prime_utr;Parent=Msa0945550-mRNA-1
chr6_3	three_prime_UTR	24373188	24373304	24373188	ID=Msa0945550-mRNA-1:three_prime_utr;Parent=Msa0945550-mRNA-1

Gene Sequence

>Msa0945550

ATGGATCAAGCAAGATCGAACAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGACGGGAAGCAATGGAGATGCACGGCCATGTCGATGCCAGATAAAACCGTTTGCGAGAAGCATTACATTCAAGCCAAGAAAAGAGCAGCGAATTCTGCCATGAGAGCTAATCTCAAGAAATCTAAGCCCGATTCTGATGTTAATTTGGAAAGTAAGAGTGATGATTTTGATGCTCCGCTTTCAACTGCGGTTAATAATAATAATAATCATCGTTCTTCCTCTTCCTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCTGAGGGTGTTCTTGGTTCTTCTTCTGGAAATAATGTTTCCAAGCTTGGTGATGGTGGTGATGTTTCGCCTGATGAGGATGCTGTTCTGTTTGAAGAGAATTGGGTCTCAAATGATTCGCAGCATGCTTCTGGTGACGATTCTGCCGGGAAAATGACAGGCAGGAGCATGGATGTTGATGTCAACACTGAATGTTCTAATGGAACATCGGATTCTTCTCAAGAAACTGGCAGGCAGACTTGCCATCAGTGTAGGAAGAATGTTAAAGATGTTAGTTGGTGCCTTAAGTGTGATAGGAGAGGATACTGTGATAGCTGCATATCAACATGGTATTCTGACATTCCATTGGATGAAATTCAGAAGATATGTCCTGCATGTCGTGGTATATGCAATTGTAAAATTTGCTTACGTAGTGATAATTCCATAAAGGTTCGGATACGTGAGATACCTGTACTGGATAAGTTACAGTATTTGCACGTGTTGCTCTCGTCAGTGCTTCCCGTGGTAAAGCAGATCCACCGAGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAGTTGAATGCAGACGAGCAGATGTGCTGGTACATCTATGACACTTATATTGAAATTGATGGTTTTTACGGCAATTTATGTAGGATACCTATCACTGATTATCATCGACGCTGCCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTCGGGAAGCTACTTTACATCAGAGTGAAGAACCTCAAACTGAGCATGCAAAAACTACTGATCGAAACATATTAAGCAAGTTTCCTCTCTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTCGCAAAATTGGTAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAACGAGTGATGCTGATGGTCCGCCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCTGAAGAACTCAAAACTGATGGGATTGGCATGTTTAGAACACACTGGAAAACTGGTGAGCCCATTATCGTTAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCGTTGGTCATATGGAGAGGGATTCTTGAGACAACAGATGAGAATATGAAAGATGATAACAGAATGGTTAAGGCCCTAGATTGCTTAGATGGGTCTGAGATTGATATCGAGCTTAATCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAGCTGAAGGATTGGCCTACACCTCGTGCATCTGAAGAATTTCTTTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTACTGATGAACTTGGCAGAGGTGATTCTGTCACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATTCAAGTGAAGTAAAGCTGAAGGACTGGCAGCGGACAAAAGTTGAAATGATGCAGAAAACTTCCAAGGAATCTGAGGCGAAAGAATCTCATGGGGATCCAGATATATGTTCAAGAGCGAGTTCACCCGATTCATCCTTTTGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAAGATTCGACTATGGATCAAGGGGTTGAAGTTTATTCTAGTGCTGAAGGGAATTTGGTCAATTGTGAAATTCCATTAAGAGAAAATGGAGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTAAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATAGTTACATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGCCCTTGATTTCTTATCTCCTGAAAGCCTGGGAGAGGCTGTAAGATTGGCAGAGGAGGTTCGCCGTCTACCTAATGAACATGAAGCAAAACTTCAAGTTTTGGAGGTGGGGAAGATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCTAAACTTGGTGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAAATGTCTAAGCAGAGGCAGATAACTTGTGCTTGA

Protein sequence

>Msa0945550

MDQARSNNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPLSTAVNNNNNHRSSSSSGKKLFDKVSKNQFRYTPEGVLGSSSGNNVSKLGDGGDVSPDEDAVLFEENWVSNDSQHASGDDSAGKMTGRSMDVDVNTECSNGTSDSSQETGRQTCHQCRKNVKDVSWCLKCDRRGYCDSCISTWYSDIPLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCWYIYDTYIEIDGFYGNLCRIPITDYHRRCPSCSYDLCLICCRDLREATLHQSEEPQTEHAKTTDRNILSKFPLWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRTSDADGPPETGLNALRLCQYSQREASNDNYLYCPTSEELKTDGIGMFRTHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDENMKDDNRMVKALDCLDGSEIDIELNQFMKGYSEGRILENGWPQILKLKDWPTPRASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGITDELGRGDSVTKLHFNMRDMVYLLVHSSEVKLKDWQRTKVEMMQKTSKESEAKESHGDPDICSRASSPDSSFCTKINGLDLESDQKDSTMDQGVEVYSSAEGNLVNCEIPLRENGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWPLYGGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLALDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKQRQITCA*