AlfalfaGEDB | Msa0645780

M. sativa cultivar zhongmu-4 / Msa0645780

KEGG: K03969
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840
PFAM: PF04012.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645780	XP_003606831.1	98.119	319	5	1	1	318	1	319	0.0	624

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645780	sp\|Q03943\|IM30_PEA	85.802	324	39	2	1	318	1	323	0.0	547

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645780	G7JEX0	98.119	319	5	1	1	318	1	319	0.0	624

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0645780	0.831154	1.959996e-55	-8.615850e-47
Msa0000500	Msa0645780	0.815156	1.068111e-51	-8.615850e-47
Msa0000780	Msa0645780	0.840073	1.083033e-57	-8.615850e-47
Msa0001420	Msa0645780	0.809710	1.654070e-50	-8.615850e-47
Msa0001460	Msa0645780	0.856239	3.679294e-62	-8.615850e-47
Msa0001540	Msa0645780	0.833368	5.553135e-56	-8.615850e-47
Msa0003470	Msa0645780	0.805941	1.046618e-49	-8.615850e-47
Msa0004350	Msa0645780	0.818262	2.148371e-52	-8.615850e-47
Msa0006050	Msa0645780	0.830953	2.196655e-55	-8.615850e-47
Msa0006700	Msa0645780	0.841299	5.170722e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645780	MtrunA17_Chr4g0033851	98.119	319	5	1	1	318	1	319	0.0	624

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645780	AT1G65260.1	71.284	296	79	4	27	318	37	330	8.13e-148	419
Msa0645780	AT1G65260.2	76.834	259	58	1	62	318	1	259	1.23e-144	408

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Find 88 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGCAGATTGAGCTC+TGG	0.463191	4_3:+51229580	None:intergenic
AACATGTTCAATGAGGAGCA+AGG	0.686791	4_3:-51225906	Msa0645780:three_prime_UTR
AACCAAGGTGAGTGAGATGC+TGG	0.429792	4_3:-51229457	Msa0645780:CDS
AACTAACTTGTGCTGTAGCT+TGG	0.486023	4_3:+51233220	None:intergenic
AAGATTGCGAAGCCGGTGCG+AGG	0.617109	4_3:-51233481	Msa0645780:CDS
AAGATTTACGAGAGTCGTGA+AGG	0.612658	4_3:-51233422	Msa0645780:intron
AAGCAGTATTCGGCGCAAGA+AGG	0.590887	4_3:-51225656	Msa0645780:three_prime_UTR
AAGTGATGATCTTGAAGGGA+AGG	0.560391	4_3:-51228658	Msa0645780:intron
AAGTTGAGCTTTCAAAGCAC+TGG	0.504664	4_3:+51231509	None:intergenic
AATTTGAAGAAAGAATTATC+TGG	0.438007	4_3:-51226657	Msa0645780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTATATTCTAACGTAAGAG+GGG	-	chr4_3:51226597-51226616	Msa0645780:intron	30.0%
TGTAATTCATGCATCTTCAA+GGG	-	chr4_3:51226627-51226646	Msa0645780:intron	30.0%
TCAAATAAGCCAATCCAAAA+AGG	-	chr4_3:51226973-51226992	Msa0645780:intron	30.0%
ACGGATGGAAAATAAATACA+AGG	-	chr4_3:51227092-51227111	Msa0645780:intron	30.0%
AGATGTGTAAAACACAAAAG+TGG	+	chr4_3:51227200-51227219	None:intergenic	30.0%
AACCTCACAACCAAATATTT+AGG	-	chr4_3:51227590-51227609	Msa0645780:intron	30.0%
AACCTAAATATTTGGTTGTG+AGG	+	chr4_3:51227595-51227614	None:intergenic	30.0%
TAGAAAAGTTAACCATTGTG+AGG	+	chr4_3:51227715-51227734	None:intergenic	30.0%
CAATCAGAAAGGCAAAAAAA+CGG	-	chr4_3:51228429-51228448	Msa0645780:intron	30.0%
ATTTCCCTAATTATTGACAG+TGG	+	chr4_3:51228507-51228526	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	51225569	51233912	51225569	ID=Msa0645780;Name=Msa0645780
chr4_3	mRNA	51225569	51233912	51225569	ID=Msa0645780-mRNA-1;Parent=Msa0645780;Name=Msa0645780-mRNA-1;_AED=0.14;_eAED=0.14;_QI=182\|1\|1\|1\|0.90\|0.83\|12\|390\|318
chr4_3	exon	51225569	51225957	51225569	ID=Msa0645780-mRNA-1:exon:12408;Parent=Msa0645780-mRNA-1
chr4_3	exon	51226272	51226383	51226272	ID=Msa0645780-mRNA-1:exon:12407;Parent=Msa0645780-mRNA-1
chr4_3	exon	51226647	51226721	51226647	ID=Msa0645780-mRNA-1:exon:12406;Parent=Msa0645780-mRNA-1
chr4_3	exon	51228659	51228723	51228659	ID=Msa0645780-mRNA-1:exon:12405;Parent=Msa0645780-mRNA-1
chr4_3	exon	51229403	51229485	51229403	ID=Msa0645780-mRNA-1:exon:12404;Parent=Msa0645780-mRNA-1
chr4_3	exon	51229584	51229654	51229584	ID=Msa0645780-mRNA-1:exon:12403;Parent=Msa0645780-mRNA-1
chr4_3	exon	51231464	51231538	51231464	ID=Msa0645780-mRNA-1:exon:12402;Parent=Msa0645780-mRNA-1
chr4_3	exon	51232173	51232254	51232173	ID=Msa0645780-mRNA-1:exon:12401;Parent=Msa0645780-mRNA-1
chr4_3	exon	51232342	51232406	51232342	ID=Msa0645780-mRNA-1:exon:12400;Parent=Msa0645780-mRNA-1
chr4_3	exon	51233227	51233337	51233227	ID=Msa0645780-mRNA-1:exon:12399;Parent=Msa0645780-mRNA-1
chr4_3	exon	51233423	51233529	51233423	ID=Msa0645780-mRNA-1:exon:12398;Parent=Msa0645780-mRNA-1
chr4_3	exon	51233619	51233912	51233619	ID=Msa0645780-mRNA-1:exon:12397;Parent=Msa0645780-mRNA-1
chr4_3	five_prime_UTR	51233731	51233912	51233731	ID=Msa0645780-mRNA-1:five_prime_utr;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51233619	51233730	51233619	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51233423	51233529	51233423	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51233227	51233337	51233227	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51232342	51232406	51232342	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51232173	51232254	51232173	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51231464	51231538	51231464	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51229584	51229654	51229584	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51229403	51229485	51229403	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51228659	51228723	51228659	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51226647	51226721	51226647	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	CDS	51226273	51226383	51226273	ID=Msa0645780-mRNA-1:cds;Parent=Msa0645780-mRNA-1
chr4_3	three_prime_UTR	51226272	51226272	51226272	ID=Msa0645780-mRNA-1:three_prime_utr;Parent=Msa0645780-mRNA-1
chr4_3	three_prime_UTR	51225569	51225957	51225569	ID=Msa0645780-mRNA-1:three_prime_utr;Parent=Msa0645780-mRNA-1

Gene Sequence

>Msa0645780

ATGGCGACGAAGCTTCAAATATTTACACAATTACCCTCCGCACCACTTCAATCTTCTTCTTCCTCTTCTCTCAGAAAGCCTCTCGCCACTTCCTTCTTCGGCACCAGACCAGCAAACACCGTGAAATTCAGAGGAATGAAGATTGCGAAGCCGGTGCGAGGTGGAGGAGCGATTGGTGCAGGCATGAACTTATTTGAAAGATTTACGAGAGTCGTGAAGTCATACGCAAATGCTATTGTAAGTTCGTTTGAGGATCCCGAGAAAATTTTGGAGCAAGCTGTGCTTGAAATGAACGATGATTTGACTAAAATGCGCCAAGCTACAGCACAAGTGTTGGCATCTCAAAAACGGATGGAAAATAAATACAAGGCTGCAACACAAGCTTCTGAAGAGTGGTATCGTAAAGCACAACTTGCTCTTCAGAAAGGGGAAGAAGATCTTGCTCGTGAAGCACTTAAGCGGCGTAAATCTTTTGCAGAGAATGCCAGTGCTTTGAAAGCTCAACTTGATCAGCAAAAGGGTGTTGTTGACAGTCTTGTCTCAAATACACGGCTTTTGGAGAGTAAAATTCAGGAGGCGAGGTCGAAGAAGGATACTCTAAAAGCCAGAGCTCAATCTGCAAAGACTTCAACCAAGGTGAGTGAGATGCTGGGAAATGTCAATACAAGTGGTGCCCTTTCAGCTTTTGAAAAAATGGAAGAGAAAGTTATGACAATGGAGTCCCAAGCTGAAGCTCTAGGTCAGTTGACAAGTGATGATCTTGAAGGGAAGTTTGCAATGCTTGAGAGTTCATCAGTTGATGATGACCTTGCAAATTTGAAGAAAGAATTATCTGGTAGCTCAAAGAAAGGAGAGCTTCCTCCTGGAAGAAGTAGCACCAGGACTGGAACTCCATTACGAGATGCTGATATTGAGATGGAACTTGATCAACTGAGACAAAGATCAAAGGAGTTTTAA

Protein sequence

>Msa0645780

MATKLQIFTQLPSAPLQSSSSSSLRKPLATSFFGTRPANTVKFRGMKIAKPVRGGGAIGAGMNLFERFTRVVKSYANAIVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEEWYRKAQLALQKGEEDLAREALKRRKSFAENASALKAQLDQQKGVVDSLVSNTRLLESKIQEARSKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLTSDDLEGKFAMLESSSVDDDLANLKKELSGSSKKGELPPGRSSTRTGTPLRDADIEMELDQLRQRSKEF*