AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387790 MtrunA17_Chr3g0120751 93.064 519 14 1 1 519 1 497 0.0 987
Msa0387790 MtrunA17_Chr6g0459101 27.217 327 203 10 65 376 65 371 2.76e-22 100
Msa0387790 MtrunA17_Chr4g0042701 25.621 523 316 21 1 500 1 473 5.53e-22 99.0
Msa0387790 MtrunA17_Chr4g0072481 21.667 300 205 7 60 355 139 412 3.21e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387790 AT3G07670.1 69.305 518 122 5 17 519 9 504 0.0 709
Msa0387790 AT3G07670.2 74.485 388 77 1 132 519 1 366 0.0 583
Msa0387790 AT5G14260.4 26.923 338 198 9 65 380 78 388 2.88e-25 108
Msa0387790 AT5G14260.2 27.273 341 193 9 65 380 78 388 5.86e-25 108
Msa0387790 AT5G14260.3 27.273 341 193 9 65 380 78 388 5.86e-25 108
Msa0387790 AT5G14260.1 27.273 341 193 9 65 380 78 388 5.86e-25 108
Msa0387790 AT3G55080.1 28.242 347 195 13 33 368 11 314 2.93e-22 100
Msa0387790 AT1G14030.1 25.785 446 274 20 65 496 47 449 1.97e-20 94.7
Msa0387790 AT3G55080.3 29.057 265 149 9 108 368 1 230 1.69e-19 90.9
Msa0387790 AT3G55080.5 29.057 265 149 9 108 368 1 230 1.69e-19 90.9
Msa0387790 AT3G55080.4 28.139 231 130 8 142 368 1 199 3.40e-16 80.5
Msa0387790 AT2G18850.1 24.315 292 188 10 65 351 148 411 1.45e-15 79.7
Msa0387790 AT2G18850.2 24.315 292 188 10 65 351 148 411 1.68e-15 79.7
Msa0387790 AT3G55080.2 27.966 236 129 9 142 368 1 204 3.78e-15 77.4

Find 128 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCATCACTTCATGTTAT+TGG 0.159601 3_1:-91869003 Msa0387790:three_prime_UTR
AGGGAAGAAATCAGGGTATT+TGG 0.193374 3_1:+91870761 None:intergenic
GAAAGGACTAATAATGTTAT+TGG 0.198637 3_1:-91870916 Msa0387790:CDS
AAAGGCTTGAAAATCTTTAA+TGG 0.210155 3_1:-91869125 Msa0387790:CDS
TGGTTGGCCATTGGAGTTAA+TGG 0.222279 3_1:-91869755 Msa0387790:CDS
TGAAAATCTTTAATGGGTTC+TGG 0.228182 3_1:-91869118 Msa0387790:CDS
GTCTTCTGTTGAGTTGTTTC+GGG 0.232871 3_1:+91869344 None:intergenic
TTAGAACTGTTGAAGAAATA+TGG 0.237492 3_1:-91869895 Msa0387790:CDS
CAGTTCTAACTTCTCCTTAT+AGG 0.242836 3_1:+91869909 None:intergenic
TTGAAGAAATATGGATTATC+AGG 0.251255 3_1:-91869886 Msa0387790:CDS
AATGCTTGCTCCTCTATTTC+AGG 0.265403 3_1:+91869554 None:intergenic
AATCTAGCTAAGCTATAGTA+TGG 0.268709 3_1:-91873331 Msa0387790:five_prime_UTR
AACCATACTCACTTCTTTAC+TGG 0.272010 3_1:-91872194 Msa0387790:CDS
TGTGATGTAATTACCTCTTC+AGG 0.272230 3_1:+91870741 None:intergenic
TGACACTAGCTTCACTTATA+AGG 0.272407 3_1:+91872262 None:intergenic
TTCAATACTTCACCAGCTTC+CGG 0.274096 3_1:+91872324 None:intergenic
AAATAAAACTACCTCGAAAA+AGG 0.280033 3_1:-91869588 Msa0387790:CDS
TTGTTGCTTTGAAGAATATT+AGG 0.281922 3_1:-91872973 Msa0387790:CDS
CTTGGATTCGTGCCCTCCTT+TGG 0.311412 3_1:+91869976 None:intergenic
ACAACCATGGTTGAAGCTTC+AGG 0.313304 3_1:-91873256 Msa0387790:CDS
AGTCTTCTGTTGAGTTGTTT+CGG 0.314214 3_1:+91869343 None:intergenic
ACACAGGTGTTTATTTCATA+TGG 0.317932 3_1:-91870042 Msa0387790:intron
ACTTGGAAGCTTCACAGATT+AGG 0.329419 3_1:-91870951 Msa0387790:CDS
ACCTCTTCAGGGAAGAAATC+AGG 0.336812 3_1:+91870753 None:intergenic
ATGAGGACTGGTGAATTAAA+AGG 0.337001 3_1:-91869143 Msa0387790:CDS
AAGGAAGAGTTTACAGAATC+AGG 0.341934 3_1:+91872905 None:intergenic
CTTGGAAGCTTCACAGATTA+GGG 0.342197 3_1:-91870950 Msa0387790:CDS
GTAGGTTCGATTGCCCTCTA+TGG 0.342737 3_1:-91870448 Msa0387790:intron
CTCTGCAACCTCATCATTGA+TGG 0.347009 3_1:-91873125 Msa0387790:CDS
AAGGCTTGAAAATCTTTAAT+GGG 0.349585 3_1:-91869124 Msa0387790:CDS
CAGATGGTTCAGTTATATAT+CGG 0.353139 3_1:-91872229 Msa0387790:CDS
TACCTGCTCACCTGGTTGAT+AGG 0.356905 3_1:+91870231 None:intergenic
GAAAGAATGCATTGGTTCCT+TGG 0.361542 3_1:-91870422 Msa0387790:CDS
ATTCATCTTCTCTTGAGAAA+TGG 0.363962 3_1:-91873063 Msa0387790:CDS
AAAATACAACAAGTTCTTAC+AGG 0.366598 3_1:-91869495 Msa0387790:intron
GGCCAACCAGTAATCCTTAT+AGG 0.372376 3_1:+91869769 None:intergenic
GGTAAGTGGATCGCTAGATT+TGG 0.375776 3_1:-91869377 Msa0387790:CDS
GTTGCAAGCAATGGCCAATC+TGG 0.384726 3_1:+91872288 None:intergenic
TCAATACTTCACCAGCTTCC+GGG 0.387137 3_1:+91872325 None:intergenic
GAAATCCGATGAGTCCTATA+AGG 0.391559 3_1:-91869923 Msa0387790:CDS
ATTGATGGAAACTATTCCTT+GGG 0.394039 3_1:-91873110 Msa0387790:CDS
TCAGGAGTGATGACAAGTTC+AGG 0.394221 3_1:+91872923 None:intergenic
ATTCACAAAACAACACATCT+TGG 0.404622 3_1:-91873181 Msa0387790:CDS
TACCAGTAAAGAAGTGAGTA+TGG 0.407176 3_1:+91872192 None:intergenic
GGGGAGCTTCTGTTATCATA+TGG 0.410226 3_1:-91870006 Msa0387790:CDS
AAAATAATGAATGGCCTCAT+TGG 0.414490 3_1:+91869087 None:intergenic
TGAATTGTTTGGTTAAAAGT+AGG 0.419376 3_1:+91873199 None:intergenic
CATTGATGGAAACTATTCCT+TGG 0.421613 3_1:-91873111 Msa0387790:CDS
AAAAGAATTCAGTTCCAGAT+TGG 0.424118 3_1:-91872302 Msa0387790:CDS
TCTCCAGATACAATGATATG+AGG 0.424444 3_1:-91870797 Msa0387790:intron
GTGTTTGTATTGGGAAGAAT+TGG 0.446381 3_1:-91872133 Msa0387790:CDS
GAGAAATGGTTGTCTCAGTC+TGG 0.449719 3_1:-91873049 Msa0387790:CDS
AAAGAATGCATTGGTTCCTT+GGG 0.460470 3_1:-91870421 Msa0387790:CDS
ACCAACATCAACTTTATCAA+TGG 0.460731 3_1:+91873006 None:intergenic
AATGAAAACAAGAAAAGAAA+AGG 0.460861 3_1:-91868911 Msa0387790:three_prime_UTR
TTTGATTTCAGCAGCAGATA+AGG 0.469294 3_1:-91873307 Msa0387790:five_prime_UTR
CAACCATGGTTGAAGCTTCA+GGG 0.470871 3_1:-91873255 Msa0387790:CDS
GAGTGGAGCTGCCCGGAAGC+TGG 0.475490 3_1:-91872336 Msa0387790:CDS
AAGGATTACTGGTTGGCCAT+TGG 0.479274 3_1:-91869764 Msa0387790:CDS
AGCAGAACTAGATCGCTACT+TGG 0.487105 3_1:-91870968 Msa0387790:CDS
TCCCTATCAACCAGGTGAGC+AGG 0.488328 3_1:-91870233 Msa0387790:intron
CTTGAGATATCCTGAAATAG+AGG 0.493097 3_1:-91869564 Msa0387790:CDS
CTTTGAGTTTGAGAAGTTGT+GGG 0.494344 3_1:+91873371 None:intergenic
GATTATGATAAATCGTCAAA+GGG 0.494942 3_1:-91870277 Msa0387790:CDS
GAGTCCTTCAAATGGTCATT+CGG 0.496702 3_1:-91870635 Msa0387790:CDS
TTCCTATAAGGATTACTGGT+TGG 0.499844 3_1:-91869771 Msa0387790:CDS
CCCTGATTTCTTCCCTGAAG+AGG 0.501319 3_1:-91870754 Msa0387790:intron
ACCTGCTCACCTGGTTGATA+GGG 0.506098 3_1:+91870232 None:intergenic
GGATTATGATAAATCGTCAA+AGG 0.508301 3_1:-91870278 Msa0387790:CDS
CGATATATAACTGAACCATC+TGG 0.510053 3_1:+91872230 None:intergenic
TGCATTCTTTCCATCCATAG+AGG 0.513905 3_1:+91870434 None:intergenic
GTGATGTAATTACCTCTTCA+GGG 0.518826 3_1:+91870742 None:intergenic
GAAGAAGACTGAGGGATATG+AGG 0.527158 3_1:-91869160 Msa0387790:CDS
AATGCCGAATGACCATTTGA+AGG 0.527488 3_1:+91870631 None:intergenic
ATCATATGGATTTGTTCCAA+AGG 0.534845 3_1:-91869992 Msa0387790:CDS
TTTATGATTACCTGCTCACC+TGG 0.538716 3_1:+91870223 None:intergenic
AGGAATAAGAGTGGTGGTGT+TGG 0.543116 3_1:+91873219 None:intergenic
CCTCTTCAGGGAAGAAATCA+GGG 0.543445 3_1:+91870754 None:intergenic
AGATGTTTCCAAAGCAAGCA+AGG 0.544329 3_1:+91869060 None:intergenic
TTGATCGATCCACAGGTAAG+TGG 0.549849 3_1:-91869391 Msa0387790:intron
AACAAGAAAAGAAAAGGCCG+TGG 0.551947 3_1:-91868905 Msa0387790:three_prime_UTR
GTTCGATTGCCCTCTATGGA+TGG 0.552132 3_1:-91870444 Msa0387790:CDS
ACTTTGAGTTTGAGAAGTTG+TGG 0.556294 3_1:+91873370 None:intergenic
AAAGTTGATGTTGGTGAGAG+AGG 0.560244 3_1:-91872998 Msa0387790:CDS
TTATTAGGAGTGGAGCTGCC+CGG 0.560448 3_1:-91872343 Msa0387790:intron
GACAACTCAACTGAATCACT+TGG 0.561180 3_1:+91869958 None:intergenic
TTCTGGAATCGTTTCCAATG+AGG 0.561253 3_1:-91869101 Msa0387790:exon
CAAGGGTGGAAAATAATGAA+TGG 0.566267 3_1:+91869078 None:intergenic
TCCATTGATAAAGTTGATGT+TGG 0.569634 3_1:-91873007 Msa0387790:CDS
TCAACATCGAGTCCTTCAAA+TGG 0.570581 3_1:-91870643 Msa0387790:CDS
TATGGATTTGTTCCAAAGGA+GGG 0.574263 3_1:-91869988 Msa0387790:CDS
TCAATGGACATCTTCTGAGA+AGG 0.574688 3_1:+91873022 None:intergenic
GCATAAGCCATTAACTCCAA+TGG 0.580262 3_1:+91869748 None:intergenic
ATAAGGTAAGTTGCAAGCAA+TGG 0.582668 3_1:+91872279 None:intergenic
CTCCAGATACAATGATATGA+GGG 0.583933 3_1:-91870796 Msa0387790:intron
AGACTGAGGGATATGAGGAC+TGG 0.586138 3_1:-91869155 Msa0387790:CDS
GTTTCCAAAGCAAGCAAGGG+TGG 0.586701 3_1:+91869064 None:intergenic
ATATGGATTTGTTCCAAAGG+AGG 0.589672 3_1:-91869989 Msa0387790:CDS
GCATTCTTTCCATCCATAGA+GGG 0.590910 3_1:+91870435 None:intergenic
CTTCTCCTTATAGGACTCAT+CGG 0.591036 3_1:+91869918 None:intergenic
ATCTAGCTAAGCTATAGTAT+GGG 0.592792 3_1:-91873330 Msa0387790:five_prime_UTR
GTTAAAAGTAGGAATAAGAG+TGG 0.593264 3_1:+91873210 None:intergenic
TGAAGAAATATGGATTATCA+GGG 0.595613 3_1:-91869885 Msa0387790:intron
AATAGTTTCCATCAATGATG+AGG 0.598821 3_1:+91873117 None:intergenic
CTTTCTAAAGCAGCTAGCCG+TGG 0.603623 3_1:-91869320 Msa0387790:CDS
GTGTCATGAAATCTTCCAGA+TGG 0.603983 3_1:-91872245 Msa0387790:CDS
GCTTTGAAGAATATTAGGAA+AGG 0.605109 3_1:-91872968 Msa0387790:CDS
TTAGGGAGAGAGCAATTGAA+AGG 0.606641 3_1:-91870933 Msa0387790:CDS
CATCCCTGAAGCTTCAACCA+TGG 0.608019 3_1:+91873252 None:intergenic
TATGGATGGAAAGAATGCAT+TGG 0.613912 3_1:-91870430 Msa0387790:CDS
GTTAGTCCTTCAAGCATGAG+AGG 0.621487 3_1:-91869715 Msa0387790:CDS
CATGAGAGGAAAATTTGAAG+AGG 0.626190 3_1:-91869701 Msa0387790:intron
TGATTCATCATGTCTGCCCA+AGG 0.634383 3_1:+91870405 None:intergenic
CATGATGAATCATAGTTGTG+AGG 0.635915 3_1:-91870394 Msa0387790:intron
GATATTGCGAAGAAGACTGA+GGG 0.640825 3_1:-91869168 Msa0387790:CDS
ACTTAGTAACATGACAACCA+TGG 0.641315 3_1:-91873269 Msa0387790:exon
ACTTGTGTAATAGCGAGCGC+AGG 0.651320 3_1:-91869297 Msa0387790:CDS
AGAAGTGAGTATGGTTGACG+AGG 0.657046 3_1:+91872201 None:intergenic
GAATCATTCTCACATCCCCA+AGG 0.662703 3_1:+91873094 None:intergenic
ACGGATCGTCCCTATCAACC+AGG 0.664539 3_1:-91870241 Msa0387790:CDS
AAAAGTAGGAATAAGAGTGG+TGG 0.668503 3_1:+91873213 None:intergenic
GATGTTTCCAAAGCAAGCAA+GGG 0.669290 3_1:+91869061 None:intergenic
TCTTCTGTTGAGTTGTTTCG+GGG 0.672386 3_1:+91869345 None:intergenic
AGATATTGCGAAGAAGACTG+AGG 0.673237 3_1:-91869169 Msa0387790:CDS
TTGATGGAAACTATTCCTTG+GGG 0.675898 3_1:-91873109 Msa0387790:CDS
AAAGGGAATTGTCTTTACGA+CGG 0.683033 3_1:-91870260 Msa0387790:CDS
GGAGTGATGACAAGTTCAGG+AGG 0.684706 3_1:+91872926 None:intergenic
CTCGCTATTACACAAGTCCA+CGG 0.710247 3_1:+91869303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATTAATAAACTAAAA+TGG + chr3_1:91869596-91869615 None:intergenic 10.0%
!! TATTGAAATTATAGTTTAAA+AGG + chr3_1:91870356-91870375 None:intergenic 10.0%
!! TTTCAATAGAAAAAAACTAA+AGG - chr3_1:91870368-91870387 Msa0387790:intron 15.0%
!! ACGTAAATAATAGTTATAAA+CGG + chr3_1:91870641-91870660 None:intergenic 15.0%
!! TCTAGAAAATTATTAAGATT+TGG - chr3_1:91870957-91870976 Msa0387790:CDS 15.0%
!! ATAACATTTCTCATAAAAAA+AGG - chr3_1:91871105-91871124 Msa0387790:intron 15.0%
!! TAACATTTCTCATAAAAAAA+GGG - chr3_1:91871106-91871125 Msa0387790:intron 15.0%
!!! TCTAATATATTTTTTGTCAT+TGG - chr3_1:91871827-91871846 Msa0387790:intron 15.0%
!!! ATTTGTTAAATTAGATACAT+AGG - chr3_1:91871957-91871976 Msa0387790:intron 15.0%
!! TATAATAACTATGAAAACTT+AGG + chr3_1:91872294-91872313 None:intergenic 15.0%
!!! TATTTAATTTCTACTTACAA+AGG - chr3_1:91872914-91872933 Msa0387790:intron 15.0%
!!! ACTTGTTTGATTTTATCTAT+TGG - chr3_1:91869366-91869385 Msa0387790:CDS 20.0%
!! GAATTAATAAACTAAAATGG+TGG + chr3_1:91869593-91869612 None:intergenic 20.0%
!!! TTATATAAGTTTTATGCTGT+CGG - chr3_1:91869656-91869675 Msa0387790:intron 20.0%
!!! ATTATTTTGTGTGTTTGTAT+TGG - chr3_1:91870004-91870023 Msa0387790:CDS 20.0%
!!! TTATTTTGTGTGTTTGTATT+GGG - chr3_1:91870005-91870024 Msa0387790:CDS 20.0%
!!! TATTTTACAATAATTCACCA+GGG - chr3_1:91870130-91870149 Msa0387790:intron 20.0%
!!! TTTTATTTTATTTTGACCCA+CGG + chr3_1:91870918-91870937 None:intergenic 20.0%
!! ATATATTAGGTACAAATGAT+CGG + chr3_1:91871267-91871286 None:intergenic 20.0%
!! GAACATATAATTCATGATAT+TGG - chr3_1:91871670-91871689 Msa0387790:intron 20.0%
!!! ATATTTTTTGTCATTGGATT+AGG - chr3_1:91871833-91871852 Msa0387790:intron 20.0%
!! TCATATGGAAAAAAATCAAA+CGG - chr3_1:91872120-91872139 Msa0387790:intron 20.0%
!! TAATGATTTCAAAAGCAATT+TGG - chr3_1:91872691-91872710 Msa0387790:intron 20.0%
!!! TTATTGGTTTTTGTTTTTGA+TGG - chr3_1:91873160-91873179 Msa0387790:CDS 20.0%
!!! TTTTTGTTTTTGATGGAAAT+AGG - chr3_1:91873167-91873186 Msa0387790:CDS 20.0%
!! AATGAAAACAAGAAAAGAAA+AGG - chr3_1:91873236-91873255 Msa0387790:CDS 20.0%
! TGAATTGTTTGGTTAAAAGT+AGG + chr3_1:91868951-91868970 None:intergenic 25.0%
!!! TTGTTGCTTTGAAGAATATT+AGG - chr3_1:91869174-91869193 Msa0387790:intron 25.0%
! ACAAATAAAGAGAAGAAGAA+AGG + chr3_1:91869264-91869283 None:intergenic 25.0%
!! TTTCTTCTTCTCTTTATTTG+TGG - chr3_1:91869263-91869282 Msa0387790:intron 25.0%
! TGAGACTATGAGATAATTTA+TGG - chr3_1:91869401-91869420 Msa0387790:intron 25.0%
! TAATTTATGGAAACAGCTTA+TGG - chr3_1:91869414-91869433 Msa0387790:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr3_1:91869540-91869559 Msa0387790:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr3_1:91869541-91869560 Msa0387790:CDS 25.0%
!!! ATTAAGCATCAATTTTAGCA+TGG + chr3_1:91869714-91869733 None:intergenic 25.0%
! ATATCCAAATCAAGTTTAGA+AGG + chr3_1:91869743-91869762 None:intergenic 25.0%
!!! TGGTGTTTATGATTTTGTTT+GGG - chr3_1:91869772-91869791 Msa0387790:CDS 25.0%
!! CTATTTTACAATAATTCACC+AGG - chr3_1:91870129-91870148 Msa0387790:intron 25.0%
! CAATAGAAAAAAACTAAAGG+TGG - chr3_1:91870371-91870390 Msa0387790:intron 25.0%
! TCAAGCAAAAAAATCTTCAA+TGG - chr3_1:91870525-91870544 Msa0387790:intron 25.0%
! AATCAACAACTATTTGACAA+CGG - chr3_1:91870604-91870623 Msa0387790:intron 25.0%
!!! TTTATTTTATTTTGACCCAC+GGG + chr3_1:91870917-91870936 None:intergenic 25.0%
! AAGATGAAATAGTACCAATA+CGG - chr3_1:91871043-91871062 Msa0387790:intron 25.0%
! ATGTTATGTTGACAACTTTA+TGG + chr3_1:91871092-91871111 None:intergenic 25.0%
! ATGAAAGAAATGAACTGTAT+AGG + chr3_1:91871148-91871167 None:intergenic 25.0%
! GAAAGGACTAATAATGTTAT+TGG - chr3_1:91871231-91871250 Msa0387790:intron 25.0%
! AATAATGTTATTGGAACGTA+TGG - chr3_1:91871240-91871259 Msa0387790:intron 25.0%
! TGCTAGTTATTGAAAAACAT+GGG + chr3_1:91871316-91871335 None:intergenic 25.0%
! TTGCTAGTTATTGAAAAACA+TGG + chr3_1:91871317-91871336 None:intergenic 25.0%
!! ATCTGAATCTGTTATTTGTA+TGG - chr3_1:91871470-91871489 Msa0387790:intron 25.0%
! GATTATGATAAATCGTCAAA+GGG - chr3_1:91871870-91871889 Msa0387790:intron 25.0%
! AATTTGCATTTCATTTACCA+AGG + chr3_1:91871999-91872018 None:intergenic 25.0%
! TTTCTTGTATCAAATTACAC+AGG - chr3_1:91872089-91872108 Msa0387790:intron 25.0%
! CATATGGAAAAAAATCAAAC+GGG - chr3_1:91872121-91872140 Msa0387790:intron 25.0%
! ATATGGAAAAAAATCAAACG+GGG - chr3_1:91872122-91872141 Msa0387790:intron 25.0%
! TTAGAACTGTTGAAGAAATA+TGG - chr3_1:91872252-91872271 Msa0387790:CDS 25.0%
!! TTGAAGAAATATGGATTATC+AGG - chr3_1:91872261-91872280 Msa0387790:CDS 25.0%
!! TGAAGAAATATGGATTATCA+GGG - chr3_1:91872262-91872281 Msa0387790:CDS 25.0%
! GTAACAAGTTTAATCATGAA+AGG + chr3_1:91872317-91872336 None:intergenic 25.0%
! AAATAAAACTACCTCGAAAA+AGG - chr3_1:91872559-91872578 Msa0387790:intron 25.0%
! AAAATACAACAAGTTCTTAC+AGG - chr3_1:91872652-91872671 Msa0387790:intron 25.0%
! AAAGGCTTGAAAATCTTTAA+TGG - chr3_1:91873022-91873041 Msa0387790:CDS 25.0%
! AAGGCTTGAAAATCTTTAAT+GGG - chr3_1:91873023-91873042 Msa0387790:CDS 25.0%
!! TTTTAGATGCAATAATTCCA+CGG + chr3_1:91873262-91873281 None:intergenic 25.0%
!!! AATTTAGCACTATTTTGAAG+AGG - chr3_1:91873339-91873358 Msa0387790:five_prime_UTR 25.0%
AATCTAGCTAAGCTATAGTA+TGG - chr3_1:91868816-91868835 Msa0387790:three_prime_UTR 30.0%
ATCTAGCTAAGCTATAGTAT+GGG - chr3_1:91868817-91868836 Msa0387790:three_prime_UTR 30.0%
GTTAAAAGTAGGAATAAGAG+TGG + chr3_1:91868940-91868959 None:intergenic 30.0%
!!! GTGTTGTTTTGTGAATTGTT+TGG + chr3_1:91868962-91868981 None:intergenic 30.0%
ATTCACAAAACAACACATCT+TGG - chr3_1:91868966-91868985 Msa0387790:three_prime_UTR 30.0%
AATAGTTTCCATCAATGATG+AGG + chr3_1:91869033-91869052 None:intergenic 30.0%
ATTGATGGAAACTATTCCTT+GGG - chr3_1:91869037-91869056 Msa0387790:three_prime_UTR 30.0%
ATTCATCTTCTCTTGAGAAA+TGG - chr3_1:91869084-91869103 Msa0387790:exon 30.0%
!! TCCATTGATAAAGTTGATGT+TGG - chr3_1:91869140-91869159 Msa0387790:CDS 30.0%
ACCAACATCAACTTTATCAA+TGG + chr3_1:91869144-91869163 None:intergenic 30.0%
!! GCTTTGAAGAATATTAGGAA+AGG - chr3_1:91869179-91869198 Msa0387790:intron 30.0%
!! ATAGCTTTGAAAACAGCTTA+TGG - chr3_1:91869339-91869358 Msa0387790:CDS 30.0%
CTTATACATGCTTATGCTAT+AGG - chr3_1:91869511-91869530 Msa0387790:CDS 30.0%
AATTTCTGAACAAAGCTTCT+TGG + chr3_1:91869619-91869638 None:intergenic 30.0%
TCAACCTTCTAAACTTGATT+TGG - chr3_1:91869736-91869755 Msa0387790:CDS 30.0%
! CTGGTGTTTATGATTTTGTT+TGG - chr3_1:91869771-91869790 Msa0387790:CDS 30.0%
!! GGTGTTTATGATTTTGTTTG+GGG - chr3_1:91869773-91869792 Msa0387790:CDS 30.0%
!! TGATTTTGTTTGGGGTATTT+TGG - chr3_1:91869781-91869800 Msa0387790:CDS 30.0%
!!! TTTGGGGTATTTTGGTTATT+AGG - chr3_1:91869789-91869808 Msa0387790:intron 30.0%
AAAAGAATTCAGTTCCAGAT+TGG - chr3_1:91869845-91869864 Msa0387790:intron 30.0%
CAGATGGTTCAGTTATATAT+CGG - chr3_1:91869918-91869937 Msa0387790:CDS 30.0%
!!! ATTCACCAGGGTTTTAAAAA+AGG - chr3_1:91870142-91870161 Msa0387790:intron 30.0%
AATATAAGCCCATCCTAAAA+TGG - chr3_1:91870286-91870305 Msa0387790:CDS 30.0%
!!! CTTTTGTACCATTTTAGGAT+GGG + chr3_1:91870297-91870316 None:intergenic 30.0%
!! ACTTTTGTACCATTTTAGGA+TGG + chr3_1:91870298-91870317 None:intergenic 30.0%
!! CTTCACTTTTGTACCATTTT+AGG + chr3_1:91870302-91870321 None:intergenic 30.0%
ATTAAGAGGAAGAACTTAGT+GGG + chr3_1:91870498-91870517 None:intergenic 30.0%
AATTAAGAGGAAGAACTTAG+TGG + chr3_1:91870499-91870518 None:intergenic 30.0%
TGCTTGAAACTGAAATTAAG+AGG + chr3_1:91870512-91870531 None:intergenic 30.0%
!! AAACTTGTTCTTTTCTATCC+AGG + chr3_1:91870727-91870746 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr3_1:91870781-91870800 Msa0387790:CDS 30.0%
CAGTTCATTTCTTTCATTTC+AGG - chr3_1:91871151-91871170 Msa0387790:intron 30.0%
! GAAAGCACAGTAGATATATT+AGG + chr3_1:91871280-91871299 None:intergenic 30.0%
ATTGTATCTGGAGAACAAAT+GGG + chr3_1:91871344-91871363 None:intergenic 30.0%
GTAATTACATCACATTGAAC+AGG - chr3_1:91871415-91871434 Msa0387790:intron 30.0%
TGTTTCATATTTGAGAGAAG+TGG - chr3_1:91871637-91871656 Msa0387790:intron 30.0%
!!! AACTTGCTAGGGATTTTATT+TGG + chr3_1:91871789-91871808 None:intergenic 30.0%
!! TATTAGAGTTCAACTTGTTG+AGG + chr3_1:91871814-91871833 None:intergenic 30.0%
!!! TTTTTTGTCATTGGATTAGG+TGG - chr3_1:91871836-91871855 Msa0387790:intron 30.0%
GGATTATGATAAATCGTCAA+AGG - chr3_1:91871869-91871888 Msa0387790:intron 30.0%
!! CTTTAGAGTCATAAACACTT+TGG + chr3_1:91872034-91872053 None:intergenic 30.0%
AAGAAATCAATTGCAGTTTG+TGG + chr3_1:91872069-91872088 None:intergenic 30.0%
ACACAGGTGTTTATTTCATA+TGG - chr3_1:91872105-91872124 Msa0387790:intron 30.0%
! ATCATATGGATTTGTTCCAA+AGG - chr3_1:91872155-91872174 Msa0387790:CDS 30.0%
! TGTTTTCCTATAAGGATTAC+TGG - chr3_1:91872372-91872391 Msa0387790:intron 30.0%
GAATTCACAAAGATAGTAAG+TGG + chr3_1:91872476-91872495 None:intergenic 30.0%
TAACCAAATGTGTGATTCTT+TGG - chr3_1:91872515-91872534 Msa0387790:intron 30.0%
TCAAATGGAAACAAACAACT+AGG + chr3_1:91872740-91872759 None:intergenic 30.0%
!! TGAAAATCTTTAATGGGTTC+TGG - chr3_1:91873029-91873048 Msa0387790:CDS 30.0%
AAAATAATGAATGGCCTCAT+TGG + chr3_1:91873063-91873082 None:intergenic 30.0%
AGTTCATCACTTCATGTTAT+TGG - chr3_1:91873144-91873163 Msa0387790:CDS 30.0%
! CTTTGAGTTTGAGAAGTTGT+GGG + chr3_1:91868779-91868798 None:intergenic 35.0%
! ACTTTGAGTTTGAGAAGTTG+TGG + chr3_1:91868780-91868799 None:intergenic 35.0%
! TTTGATTTCAGCAGCAGATA+AGG - chr3_1:91868840-91868859 Msa0387790:three_prime_UTR 35.0%
ACTTAGTAACATGACAACCA+TGG - chr3_1:91868878-91868897 Msa0387790:three_prime_UTR 35.0%
AAAAGTAGGAATAAGAGTGG+TGG + chr3_1:91868937-91868956 None:intergenic 35.0%
CATTGATGGAAACTATTCCT+TGG - chr3_1:91869036-91869055 Msa0387790:three_prime_UTR 35.0%
TTGATGGAAACTATTCCTTG+GGG - chr3_1:91869038-91869057 Msa0387790:three_prime_UTR 35.0%
AAGGAAGAGTTTACAGAATC+AGG + chr3_1:91869245-91869264 None:intergenic 35.0%
CTATCTATGCACTATGCTTA+TGG + chr3_1:91869445-91869464 None:intergenic 35.0%
GATTTGGATATCTTGTGTTC+TGG - chr3_1:91869752-91869771 Msa0387790:CDS 35.0%
!!! GGTATTTTGGTTATTAGGAG+TGG - chr3_1:91869794-91869813 Msa0387790:intron 35.0%
ATAAGGTAAGTTGCAAGCAA+TGG + chr3_1:91869871-91869890 None:intergenic 35.0%
! TGACACTAGCTTCACTTATA+AGG + chr3_1:91869888-91869907 None:intergenic 35.0%
CGATATATAACTGAACCATC+TGG + chr3_1:91869920-91869939 None:intergenic 35.0%
AACCATACTCACTTCTTTAC+TGG - chr3_1:91869953-91869972 Msa0387790:CDS 35.0%
TACCAGTAAAGAAGTGAGTA+TGG + chr3_1:91869958-91869977 None:intergenic 35.0%
GTGTTTGTATTGGGAAGAAT+TGG - chr3_1:91870014-91870033 Msa0387790:CDS 35.0%
! AAATGCTTTGTTACCTTGCT+AGG - chr3_1:91870079-91870098 Msa0387790:intron 35.0%
! AATGCTTTGTTACCTTGCTA+GGG - chr3_1:91870080-91870099 Msa0387790:intron 35.0%
!!! TCGATCCTTTTTTAAAACCC+TGG + chr3_1:91870150-91870169 None:intergenic 35.0%
AAAAGGATCGAAGTAACAGT+TGG - chr3_1:91870159-91870178 Msa0387790:intron 35.0%
TCTTGTACGGATATAGATGA+AGG + chr3_1:91870434-91870453 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr3_1:91870750-91870769 Msa0387790:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr3_1:91870751-91870770 Msa0387790:intron 35.0%
GCGACAAACCTATCAAAATA+AGG - chr3_1:91870780-91870799 Msa0387790:CDS 35.0%
ACCTATCAAAATAAGGGTTC+CGG - chr3_1:91870787-91870806 Msa0387790:CDS 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG + chr3_1:91870816-91870835 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG + chr3_1:91870819-91870838 None:intergenic 35.0%
! AATGAAAAAGTGTGCCTCTT+AGG - chr3_1:91870852-91870871 Msa0387790:intron 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr3_1:91870898-91870917 Msa0387790:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr3_1:91870899-91870918 Msa0387790:intron 35.0%
!! ATTAGCTGTTTCTCTGATGT+AGG + chr3_1:91871020-91871039 None:intergenic 35.0%
ACCAATACGGTATCTTTAGA+CGG - chr3_1:91871056-91871075 Msa0387790:intron 35.0%
CATTGTATCTGGAGAACAAA+TGG + chr3_1:91871345-91871364 None:intergenic 35.0%
TCTCCAGATACAATGATATG+AGG - chr3_1:91871350-91871369 Msa0387790:intron 35.0%
CTCCAGATACAATGATATGA+GGG - chr3_1:91871351-91871370 Msa0387790:intron 35.0%
AACCCTCATATCATTGTATC+TGG + chr3_1:91871356-91871375 None:intergenic 35.0%
GTGATGTAATTACCTCTTCA+GGG + chr3_1:91871408-91871427 None:intergenic 35.0%
TGTGATGTAATTACCTCTTC+AGG + chr3_1:91871409-91871428 None:intergenic 35.0%
! CTGTTATTTGTATGGCTTTC+AGG - chr3_1:91871478-91871497 Msa0387790:intron 35.0%
TATGGATGGAAAGAATGCAT+TGG - chr3_1:91871717-91871736 Msa0387790:intron 35.0%
!! AAAGAATGCATTGGTTCCTT+GGG - chr3_1:91871726-91871745 Msa0387790:intron 35.0%
CATGATGAATCATAGTTGTG+AGG - chr3_1:91871753-91871772 Msa0387790:intron 35.0%
ATGAATCATAGTTGTGAGGT+AGG - chr3_1:91871757-91871776 Msa0387790:intron 35.0%
TGAATCATAGTTGTGAGGTA+GGG - chr3_1:91871758-91871777 Msa0387790:intron 35.0%
!! TTGTTGAGGAAAACTTGCTA+GGG + chr3_1:91871800-91871819 None:intergenic 35.0%
AAAGGGAATTGTCTTTACGA+CGG - chr3_1:91871887-91871906 Msa0387790:intron 35.0%
CAGGTAATCATAAACTCAGA+TGG - chr3_1:91871933-91871952 Msa0387790:intron 35.0%
GATAAGACAGTTAAGTACCT+TGG - chr3_1:91871979-91871998 Msa0387790:intron 35.0%
! ATATGGATTTGTTCCAAAGG+AGG - chr3_1:91872158-91872177 Msa0387790:CDS 35.0%
! TATGGATTTGTTCCAAAGGA+GGG - chr3_1:91872159-91872178 Msa0387790:CDS 35.0%
! CAGTTCTAACTTCTCCTTAT+AGG + chr3_1:91872241-91872260 None:intergenic 35.0%
TATAGGAAAACACTGAGATC+TGG + chr3_1:91872364-91872383 None:intergenic 35.0%
! GATCTCAGTGTTTTCCTATA+AGG - chr3_1:91872364-91872383 Msa0387790:intron 35.0%
TTCCTATAAGGATTACTGGT+TGG - chr3_1:91872376-91872395 Msa0387790:intron 35.0%
! AATTTTCCTCTCATGCTTGA+AGG + chr3_1:91872441-91872460 None:intergenic 35.0%
CATGAGAGGAAAATTTGAAG+AGG - chr3_1:91872446-91872465 Msa0387790:intron 35.0%
TGTCCAAAGAATCACACATT+TGG + chr3_1:91872521-91872540 None:intergenic 35.0%
!!! CGAGGTAGTTTTATTTGATG+CGG + chr3_1:91872555-91872574 None:intergenic 35.0%
!! ATATCTCAAGTCCTTTTTCG+AGG + chr3_1:91872573-91872592 None:intergenic 35.0%
CTTGAGATATCCTGAAATAG+AGG - chr3_1:91872583-91872602 Msa0387790:intron 35.0%
! AGTCTTCTGTTGAGTTGTTT+CGG + chr3_1:91872807-91872826 None:intergenic 35.0%
! ATGAGGACTGGTGAATTAAA+AGG - chr3_1:91873004-91873023 Msa0387790:CDS 35.0%
CAAGGGTGGAAAATAATGAA+TGG + chr3_1:91873072-91873091 None:intergenic 35.0%
! TCAATGGACATCTTCTGAGA+AGG + chr3_1:91869128-91869147 None:intergenic 40.0%
!! AAAGTTGATGTTGGTGAGAG+AGG - chr3_1:91869149-91869168 Msa0387790:CDS 40.0%
TCGTCACATAACTGTCTATG+AGG + chr3_1:91869567-91869586 None:intergenic 40.0%
TTCAATACTTCACCAGCTTC+CGG + chr3_1:91869826-91869845 None:intergenic 40.0%
GTGTCATGAAATCTTCCAGA+TGG - chr3_1:91869902-91869921 Msa0387790:CDS 40.0%
CTGCATTCTCTGCAATATCA+AGG + chr3_1:91870197-91870216 None:intergenic 40.0%
CATCTATATCCGTACAAGAG+AGG - chr3_1:91870435-91870454 Msa0387790:CDS 40.0%
AGAGAAACACCTCTCTTGTA+CGG + chr3_1:91870447-91870466 None:intergenic 40.0%
TTTACGTGACTATGAGAGAG+AGG - chr3_1:91870654-91870673 Msa0387790:intron 40.0%
TTACGTGACTATGAGAGAGA+GGG - chr3_1:91870655-91870674 Msa0387790:intron 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG + chr3_1:91870791-91870810 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG + chr3_1:91870809-91870828 None:intergenic 40.0%
CAGAACTTATGTAGCCTAAG+AGG + chr3_1:91870869-91870888 None:intergenic 40.0%
ACCGTCTAAAGATACCGTAT+TGG + chr3_1:91871060-91871079 None:intergenic 40.0%
ACTTGGAAGCTTCACAGATT+AGG - chr3_1:91871196-91871215 Msa0387790:intron 40.0%
CTTGGAAGCTTCACAGATTA+GGG - chr3_1:91871197-91871216 Msa0387790:intron 40.0%
TTAGGGAGAGAGCAATTGAA+AGG - chr3_1:91871214-91871233 Msa0387790:intron 40.0%
! AGGGAAGAAATCAGGGTATT+TGG + chr3_1:91871389-91871408 None:intergenic 40.0%
TCAACATCGAGTCCTTCAAA+TGG - chr3_1:91871504-91871523 Msa0387790:intron 40.0%
GAGTCCTTCAAATGGTCATT+CGG - chr3_1:91871512-91871531 Msa0387790:intron 40.0%
AATGCCGAATGACCATTTGA+AGG + chr3_1:91871519-91871538 None:intergenic 40.0%
GCATTCTTTCCATCCATAGA+GGG + chr3_1:91871715-91871734 None:intergenic 40.0%
TGCATTCTTTCCATCCATAG+AGG + chr3_1:91871716-91871735 None:intergenic 40.0%
!! GAAAGAATGCATTGGTTCCT+TGG - chr3_1:91871725-91871744 Msa0387790:intron 40.0%
! CTTGTTGAGGAAAACTTGCT+AGG + chr3_1:91871801-91871820 None:intergenic 40.0%
!!! GGATTAGGTGGAGACTTTTT+TGG - chr3_1:91871848-91871867 Msa0387790:intron 40.0%
TTTATGATTACCTGCTCACC+TGG + chr3_1:91871927-91871946 None:intergenic 40.0%
GAGTCATAAACACTTTGGCA+AGG + chr3_1:91872029-91872048 None:intergenic 40.0%
GACAACTCAACTGAATCACT+TGG + chr3_1:91872192-91872211 None:intergenic 40.0%
GAAATCCGATGAGTCCTATA+AGG - chr3_1:91872224-91872243 Msa0387790:CDS 40.0%
CTTCTCCTTATAGGACTCAT+CGG + chr3_1:91872232-91872251 None:intergenic 40.0%
GCATAAGCCATTAACTCCAA+TGG + chr3_1:91872402-91872421 None:intergenic 40.0%
TGTGTGATTCTTTGGACAGA+TGG - chr3_1:91872523-91872542 Msa0387790:intron 40.0%
!!! GGTAGTTTTATTTGATGCGG+CGG + chr3_1:91872552-91872571 None:intergenic 40.0%
AATGCTTGCTCCTCTATTTC+AGG + chr3_1:91872596-91872615 None:intergenic 40.0%
ACAACAAGTTCTTACAGGCA+AGG - chr3_1:91872657-91872676 Msa0387790:intron 40.0%
TTTCCATTTGATCGATCCAC+AGG - chr3_1:91872749-91872768 Msa0387790:intron 40.0%
TTACCTGTGGATCGATCAAA+TGG + chr3_1:91872755-91872774 None:intergenic 40.0%
! TCTTCTGTTGAGTTGTTTCG+GGG + chr3_1:91872805-91872824 None:intergenic 40.0%
! GTCTTCTGTTGAGTTGTTTC+GGG + chr3_1:91872806-91872825 None:intergenic 40.0%
AGATATTGCGAAGAAGACTG+AGG - chr3_1:91872978-91872997 Msa0387790:CDS 40.0%
GATATTGCGAAGAAGACTGA+GGG - chr3_1:91872979-91872998 Msa0387790:CDS 40.0%
!! TTCTGGAATCGTTTCCAATG+AGG - chr3_1:91873046-91873065 Msa0387790:CDS 40.0%
GATGTTTCCAAAGCAAGCAA+GGG + chr3_1:91873089-91873108 None:intergenic 40.0%
AGATGTTTCCAAAGCAAGCA+AGG + chr3_1:91873090-91873109 None:intergenic 40.0%
AACAAGAAAAGAAAAGGCCG+TGG - chr3_1:91873242-91873261 Msa0387790:CDS 40.0%
ACAACCATGGTTGAAGCTTC+AGG - chr3_1:91868891-91868910 Msa0387790:three_prime_UTR 45.0%
CAACCATGGTTGAAGCTTCA+GGG - chr3_1:91868892-91868911 Msa0387790:three_prime_UTR 45.0%
! AGGAATAAGAGTGGTGGTGT+TGG + chr3_1:91868931-91868950 None:intergenic 45.0%
CTCTGCAACCTCATCATTGA+TGG - chr3_1:91869022-91869041 Msa0387790:three_prime_UTR 45.0%
GAATCATTCTCACATCCCCA+AGG + chr3_1:91869056-91869075 None:intergenic 45.0%
GAGAAATGGTTGTCTCAGTC+TGG - chr3_1:91869098-91869117 Msa0387790:exon 45.0%
TCAGGAGTGATGACAAGTTC+AGG + chr3_1:91869227-91869246 None:intergenic 45.0%
TCAATACTTCACCAGCTTCC+GGG + chr3_1:91869825-91869844 None:intergenic 45.0%
AGAAGTGAGTATGGTTGACG+AGG + chr3_1:91869949-91869968 None:intergenic 45.0%
ATCTCACATTCTCCCTAGCA+AGG + chr3_1:91870095-91870114 None:intergenic 45.0%
GCAGAGAATGCAGTCAAATG+TGG - chr3_1:91870204-91870223 Msa0387790:intron 45.0%
!! GCTGTTTCTCTGATGTAGGA+GGG + chr3_1:91871016-91871035 None:intergenic 45.0%
!! AGCTGTTTCTCTGATGTAGG+AGG + chr3_1:91871017-91871036 None:intergenic 45.0%
AGCAGAACTAGATCGCTACT+TGG - chr3_1:91871179-91871198 Msa0387790:intron 45.0%
CCTCTTCAGGGAAGAAATCA+GGG + chr3_1:91871396-91871415 None:intergenic 45.0%
ACCTCTTCAGGGAAGAAATC+AGG + chr3_1:91871397-91871416 None:intergenic 45.0%
TCATGATATTGGCACCGTGT+AGG - chr3_1:91871681-91871700 Msa0387790:intron 45.0%
TGATTCATCATGTCTGCCCA+AGG + chr3_1:91871745-91871764 None:intergenic 45.0%
GGGGAGCTTCTGTTATCATA+TGG - chr3_1:91872141-91872160 Msa0387790:CDS 45.0%
GGCCAACCAGTAATCCTTAT+AGG + chr3_1:91872381-91872400 None:intergenic 45.0%
! AAGGATTACTGGTTGGCCAT+TGG - chr3_1:91872383-91872402 Msa0387790:intron 45.0%
! TGGTTGGCCATTGGAGTTAA+TGG - chr3_1:91872392-91872411 Msa0387790:intron 45.0%
GTTAGTCCTTCAAGCATGAG+AGG - chr3_1:91872432-91872451 Msa0387790:intron 45.0%
TTGATCGATCCACAGGTAAG+TGG - chr3_1:91872756-91872775 Msa0387790:intron 45.0%
GGTAAGTGGATCGCTAGATT+TGG - chr3_1:91872770-91872789 Msa0387790:intron 45.0%
CTCGCTATTACACAAGTCCA+CGG + chr3_1:91872847-91872866 None:intergenic 45.0%
GAAGAAGACTGAGGGATATG+AGG - chr3_1:91872987-91873006 Msa0387790:CDS 45.0%
! TTTTCCACCCTTGCTTGCTT+TGG - chr3_1:91873079-91873098 Msa0387790:CDS 45.0%
CATCCCTGAAGCTTCAACCA+TGG + chr3_1:91868898-91868917 None:intergenic 50.0%
GGAGTGATGACAAGTTCAGG+AGG + chr3_1:91869224-91869243 None:intergenic 50.0%
ACTGTCTATGAGGCCCTGTT+TGG + chr3_1:91869557-91869576 None:intergenic 50.0%
TTATTAGGAGTGGAGCTGCC+CGG - chr3_1:91869804-91869823 Msa0387790:intron 50.0%
GTTGCAAGCAATGGCCAATC+TGG + chr3_1:91869862-91869881 None:intergenic 50.0%
GTCAAATGTGGCCTCAATCG+CGG - chr3_1:91870216-91870235 Msa0387790:intron 50.0%
GGAGAGAGAATGACGCAGTA+CGG - chr3_1:91870676-91870695 Msa0387790:intron 50.0%
CCCTGATTTCTTCCCTGAAG+AGG - chr3_1:91871393-91871412 Msa0387790:intron 50.0%
AGAGGGCAATCGAACCTACA+CGG + chr3_1:91871698-91871717 None:intergenic 50.0%
GTAGGTTCGATTGCCCTCTA+TGG - chr3_1:91871699-91871718 Msa0387790:intron 50.0%
GTTCGATTGCCCTCTATGGA+TGG - chr3_1:91871703-91871722 Msa0387790:intron 50.0%
! ACCTGCTCACCTGGTTGATA+GGG + chr3_1:91871918-91871937 None:intergenic 50.0%
TACCTGCTCACCTGGTTGAT+AGG + chr3_1:91871919-91871938 None:intergenic 50.0%
TCTAGCGATCCACTTACCTG+TGG + chr3_1:91872768-91872787 None:intergenic 50.0%
!! CTTTCTAAAGCAGCTAGCCG+TGG - chr3_1:91872827-91872846 Msa0387790:intron 50.0%
ACTTGTGTAATAGCGAGCGC+AGG - chr3_1:91872850-91872869 Msa0387790:intron 50.0%
AGACTGAGGGATATGAGGAC+TGG - chr3_1:91872992-91873011 Msa0387790:CDS 50.0%
GTTTCCAAAGCAAGCAAGGG+TGG + chr3_1:91873086-91873105 None:intergenic 50.0%
! ATGACGCAGTACGGAAGCGT+AGG - chr3_1:91870685-91870704 Msa0387790:intron 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr3_1:91870686-91870705 Msa0387790:intron 55.0%
! GGGTTAGCAAGCGCTAAACC+TGG - chr3_1:91870706-91870725 Msa0387790:intron 55.0%
! CGGCATTCTTTTCTCGCGCA+TGG - chr3_1:91871532-91871551 Msa0387790:intron 55.0%
TCGCGCATGGTGAGTCAATC+TGG - chr3_1:91871545-91871564 Msa0387790:intron 55.0%
ACGGATCGTCCCTATCAACC+AGG - chr3_1:91871906-91871925 Msa0387790:intron 55.0%
TCCCTATCAACCAGGTGAGC+AGG - chr3_1:91871914-91871933 Msa0387790:intron 55.0%
CTTGGATTCGTGCCCTCCTT+TGG + chr3_1:91872174-91872193 None:intergenic 55.0%
GCCTCAATCGCGGTCAGCTG+CGG - chr3_1:91870226-91870245 Msa0387790:intron 65.0%
GAGTGGAGCTGCCCGGAAGC+TGG - chr3_1:91869811-91869830 Msa0387790:intron 70.0%
GCCGCAGCTGACCGCGATTG+AGG + chr3_1:91870230-91870249 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 91868770 91873399 91868770 ID=Msa0387790;Name=Msa0387790
chr3_1 mRNA 91868770 91873399 91868770 ID=Msa0387790-mRNA-1;Parent=Msa0387790;Name=Msa0387790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=118|0.90|0.91|1|1|1|12|333|519
chr3_1 exon 91868770 91869189 91868770 ID=Msa0387790-mRNA-1:exon:25731;Parent=Msa0387790-mRNA-1
chr3_1 exon 91869276 91869398 91869276 ID=Msa0387790-mRNA-1:exon:25730;Parent=Msa0387790-mRNA-1
chr3_1 exon 91869496 91869627 91869496 ID=Msa0387790-mRNA-1:exon:25729;Parent=Msa0387790-mRNA-1
chr3_1 exon 91869702 91869804 91869702 ID=Msa0387790-mRNA-1:exon:25728;Parent=Msa0387790-mRNA-1
chr3_1 exon 91869886 91870058 91869886 ID=Msa0387790-mRNA-1:exon:25727;Parent=Msa0387790-mRNA-1
chr3_1 exon 91870234 91870314 91870234 ID=Msa0387790-mRNA-1:exon:25726;Parent=Msa0387790-mRNA-1
chr3_1 exon 91870395 91870466 91870395 ID=Msa0387790-mRNA-1:exon:25725;Parent=Msa0387790-mRNA-1
chr3_1 exon 91870616 91870669 91870616 ID=Msa0387790-mRNA-1:exon:25724;Parent=Msa0387790-mRNA-1
chr3_1 exon 91870755 91870812 91870755 ID=Msa0387790-mRNA-1:exon:25723;Parent=Msa0387790-mRNA-1
chr3_1 exon 91870913 91870996 91870913 ID=Msa0387790-mRNA-1:exon:25722;Parent=Msa0387790-mRNA-1
chr3_1 exon 91872129 91872358 91872129 ID=Msa0387790-mRNA-1:exon:25721;Parent=Msa0387790-mRNA-1
chr3_1 exon 91872919 91873399 91872919 ID=Msa0387790-mRNA-1:exon:25720;Parent=Msa0387790-mRNA-1
chr3_1 five_prime_UTR 91873282 91873399 91873282 ID=Msa0387790-mRNA-1:five_prime_utr;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91872919 91873281 91872919 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91872129 91872358 91872129 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91870913 91870996 91870913 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91870755 91870812 91870755 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91870616 91870669 91870616 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91870395 91870466 91870395 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91870234 91870314 91870234 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91869886 91870058 91869886 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91869702 91869804 91869702 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91869496 91869627 91869496 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91869276 91869398 91869276 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 CDS 91869103 91869189 91869103 ID=Msa0387790-mRNA-1:cds;Parent=Msa0387790-mRNA-1
chr3_1 three_prime_UTR 91868770 91869102 91868770 ID=Msa0387790-mRNA-1:three_prime_utr;Parent=Msa0387790-mRNA-1
Gene Sequence

>Msa0387790

ATGACAACCATGGTTGAAGCTTCAGGGATGATGATGTTCACCAACACCACCACTCTTATTCCTACTTTTAACCAAACAATTCACAAAACAACACATCTTGGATTCTCACGTAGAAACAATGCTCATTTTTCACTCTCTGCAACCTCATCATTGATGGAAACTATTCCTTGGGGATGTGAGAATGATTCAATTGAAAATTCATCTTCTCTTGAGAAATGGTTGTCTCAGTCTGGTCTTCCTTCTCAGAAGATGTCCATTGATAAAGTTGATGTTGGTGAGAGAGGACTTGTTGCTTTGAAGAATATTAGGAAAGGAGAGAAGCTTCTTTTTGTTCCTCCTGAACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTTCCAGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTGTCATGAAATCTTCCAGATGGTTCAGTTATATATCGGCTTTACCTCGTCAACCATACTCACTTCTTTACTGGTACTTGAATTCAATTGCTCTTATCATGAATTATTTTGTGTGTTTGTATTGGGAAGAATTGGAGAAGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTTCGATTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGACATGATGAATCATAGTTGTGAGGTGGAGACTTTTTTGGATTATGATAAATCGTCAAAGGGAATTGTCTTTACGACGGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCAGGATCTCAGTGTTTTCCTATAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATCGTTTCCAATGA

Protein sequence

>Msa0387790

MTTMVEASGMMMFTNTTTLIPTFNQTIHKTTHLGFSRRNNAHFSLSATSSLMETIPWGCENDSIENSSSLEKWLSQSGLPSQKMSIDKVDVGERGLVALKNIRKGEKLLFVPPELVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASVMKSSRWFSYISALPRQPYSLLYWYLNSIALIMNYFVCLYWEELEKSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNRFQ*