AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153640 MtrunA17_Chr1g0163521 98.095 105 2 0 22 126 267 371 1.29e-66 205
Msa0153640 MtrunA17_Chr5g0436571 71.264 87 25 0 22 108 231 317 1.18e-36 127
Msa0153640 MtrunA17_Chr8g0372531 38.095 84 50 1 25 108 222 303 2.42e-14 67.8
Msa0153640 MtrunA17_Chr7g0269701 39.759 83 47 1 18 100 217 296 3.23e-14 67.4
Msa0153640 MtrunA17_Chr1g0195101 39.759 83 47 1 18 100 214 293 6.92e-13 63.5
Msa0153640 MtrunA17_Chr3g0131501 44.156 77 39 2 32 108 406 478 1.58e-12 62.8
Msa0153640 MtrunA17_Chr5g0423111 29.808 104 71 1 18 119 213 316 1.94e-11 59.7
Msa0153640 MtrunA17_Chr8g0385571 42.857 77 40 2 32 108 428 500 4.63e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153640 AT2G39970.1 78.409 88 19 0 22 109 233 320 2.60e-41 139
Msa0153640 AT2G47490.1 39.175 97 52 2 18 110 211 304 2.16e-13 65.5
Msa0153640 AT1G25380.1 35.165 91 58 1 18 108 215 304 4.18e-13 64.7
Msa0153640 AT1G25380.2 35.165 91 58 1 18 108 215 304 4.18e-13 64.7
Msa0153640 AT5G66380.1 35.417 96 60 1 13 108 205 298 2.83e-12 62.4

Find 85 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTGTGGCTGCTATTGC+AGG 0.200548 1_4:-17210421 Msa0153640:five_prime_UTR
ATGACCCTTTATTAGGTTAT+TGG 0.201418 1_4:-17212204 Msa0153640:intron
AAGCCGGTATAGTTGGATTT+TGG 0.206499 1_4:-17209472 Msa0153640:five_prime_UTR
GGTCTTAAGCCTTCTCTTCT+TGG 0.216302 1_4:-17212153 Msa0153640:five_prime_UTR
AGGAAAAGAAAGAAGCTTTA+AGG 0.260649 1_4:-17209853 Msa0153640:five_prime_UTR
TGCTGCTTCTGTATTATTCA+TGG 0.278898 1_4:-17206532 Msa0153640:CDS
ACTACTGCTTCTTCTTCTTC+TGG 0.290540 1_4:-17212316 Msa0153640:five_prime_UTR
CGAGTCACGAGAACCCAAAT+TGG 0.304007 1_4:+17210278 None:intergenic
AGAGTTCATTAAAGCATCTA+AGG 0.312907 1_4:-17209131 Msa0153640:five_prime_UTR
AACTCTCGTAAATCATAAAC+TGG 0.323668 1_4:+17209148 None:intergenic
TGTCATCCCTGCTCTAATTA+TGG 0.328813 1_4:-17209444 Msa0153640:intron
CACGAGTGTAACTGCTTTAG+AGG 0.333460 1_4:-17209079 Msa0153640:five_prime_UTR
TCTTGGAACTGCTGCTTCTC+AGG 0.346908 1_4:-17212136 Msa0153640:intron
TAAGTGTTCTCTCAGTTTGT+TGG 0.348838 1_4:+17212374 None:intergenic
TCTACAAAGCCTCAACCATT+TGG 0.356074 1_4:-17209767 Msa0153640:five_prime_UTR
GGTTATTGGAAATGAAGGTT+GGG 0.381820 1_4:-17212190 Msa0153640:five_prime_UTR
AATCCTCTTGTCATTCAAAA+AGG 0.386548 1_4:-17208951 Msa0153640:CDS
GTCAAGGCTTCAAGCAAAAC+AGG 0.402686 1_4:-17208349 Msa0153640:CDS
ACAAGTGGAAATCATGTGTT+AGG 0.404958 1_4:-17209038 Msa0153640:five_prime_UTR
GCGTCTGAGAGTAGCTTAAC+AGG 0.405111 1_4:-17209824 Msa0153640:five_prime_UTR
CTACAAAGCCTCAACCATTT+GGG 0.406638 1_4:-17209766 Msa0153640:five_prime_UTR
CTCATCCCTTTATAAAAGCC+TGG 0.415845 1_4:+17206579 None:intergenic
TTATGTGTTTGTTTGGTTCA+CGG 0.431969 1_4:+17212765 None:intergenic
TTCGTGAGGTGTTAGTTTAG+TGG 0.432964 1_4:-17206388 Msa0153640:three_prime_UTR
GACGGTACTGTTGGAATGTT+CGG 0.436028 1_4:-17210448 Msa0153640:five_prime_UTR
AGGTTATTGGAAATGAAGGT+TGG 0.438668 1_4:-17212191 Msa0153640:five_prime_UTR
AGAAGCAGTAGTTATTGTGT+TGG 0.439931 1_4:+17212327 None:intergenic
CTTAAAATGATCCGTTATGA+AGG 0.440580 1_4:-17206606 Msa0153640:CDS
TTTGTTCACAAACCCAATTT+GGG 0.452158 1_4:-17210291 Msa0153640:five_prime_UTR
TATTAGGTTATTGGAAATGA+AGG 0.455803 1_4:-17212195 Msa0153640:intron
GCCATAGCCAATGGTTTAGC+TGG 0.464563 1_4:-17212545 Msa0153640:five_prime_UTR
GAGTCACGAGAACCCAAATT+GGG 0.469815 1_4:+17210279 None:intergenic
AAACTGAGAGAACACTTAAG+AGG 0.470485 1_4:-17212369 Msa0153640:five_prime_UTR
GTTGGAGCAATAGCAAAACT+TGG 0.479144 1_4:-17208920 Msa0153640:CDS
TATAACGAAGCCGGTATAGT+TGG 0.486247 1_4:-17209479 Msa0153640:five_prime_UTR
GGTTCTCGTGACTCGAATGC+AGG 0.489190 1_4:-17210270 Msa0153640:intron
AAACTAACCATAATTAGAGC+AGG 0.492722 1_4:+17209437 None:intergenic
TAGCTTAACAGGTTCAACTT+TGG 0.494662 1_4:-17209813 Msa0153640:five_prime_UTR
GGTAAAGGAGGAGCTTGTTA+AGG 0.495294 1_4:-17206511 Msa0153640:CDS
TTCTGTATTATTCATGGTAA+AGG 0.502004 1_4:-17206526 Msa0153640:CDS
GGTTGGGGTGGACTCTATAG+TGG 0.503801 1_4:-17212174 Msa0153640:five_prime_UTR
GCCAATGGTTTAGCTGGAGC+TGG 0.509902 1_4:-17212539 Msa0153640:five_prime_UTR
TAGTTGAATTGAAGTAAAAG+TGG 0.510530 1_4:+17212693 None:intergenic
ATCCGTTATGAAGGACTCCC+AGG 0.512939 1_4:-17206597 Msa0153640:CDS
TTACCTTGACAACTAGCAAT+GGG 0.516339 1_4:+17208879 None:intergenic
CTTCAAGCAAAACAGGAGAT+TGG 0.521460 1_4:-17208342 Msa0153640:CDS
CTCGTAAATCATAAACTGGA+TGG 0.522237 1_4:+17209152 None:intergenic
AATAACTCATTAAGATACTC+AGG 0.526598 1_4:-17208315 Msa0153640:intron
TTTCCAAAATCCAACTATAC+CGG 0.529288 1_4:+17209469 None:intergenic
AGTTGAATTGAAGTAAAAGT+GGG 0.530977 1_4:+17212694 None:intergenic
TAAATCATAAACTGGATGGA+TGG 0.538625 1_4:+17209156 None:intergenic
GGTTTAGCTGGAGCTGGTGG+TGG 0.545599 1_4:-17212533 Msa0153640:five_prime_UTR
TCCAGCTAAACCATTGGCTA+TGG 0.546790 1_4:+17212544 None:intergenic
AACGCTCTGCTAAGAAGCAA+GGG 0.553222 1_4:-17209104 Msa0153640:five_prime_UTR
ACAGCATGTATAGTCCCAAA+TGG 0.557489 1_4:+17209752 None:intergenic
GTACTGTTGGAATGTTCGGT+TGG 0.557910 1_4:-17210444 Msa0153640:five_prime_UTR
AGAATACTTTAAAATACAAG+TGG 0.561728 1_4:-17209053 Msa0153640:five_prime_UTR
GCAGCAGTTCCAAGAAGAGA+AGG 0.561769 1_4:+17212144 None:intergenic
GTTATTGGAAATGAAGGTTG+GGG 0.562835 1_4:-17212189 Msa0153640:five_prime_UTR
GGACATGGAGACGGTACTGT+TGG 0.566770 1_4:-17210457 Msa0153640:five_prime_UTR
CTTACCTTGACAACTAGCAA+TGG 0.571902 1_4:+17208878 None:intergenic
TGTATTATTCATGGTAAAGG+AGG 0.574583 1_4:-17206523 Msa0153640:CDS
AAACGCTCTGCTAAGAAGCA+AGG 0.580328 1_4:-17209105 Msa0153640:five_prime_UTR
TGTATAGTCCCAAATGGTTG+AGG 0.582382 1_4:+17209758 None:intergenic
ACCAGCTCCAGCTAAACCAT+TGG 0.585042 1_4:+17212538 None:intergenic
ATACCCATTGCTAGTTGTCA+AGG 0.585169 1_4:-17208882 Msa0153640:intron
TCATCCCTTTATAAAAGCCT+GGG 0.585664 1_4:+17206580 None:intergenic
AAAGAAAGAAGCTTTAAGGA+AGG 0.587121 1_4:-17209849 Msa0153640:five_prime_UTR
CAAGCAAAACAGGAGATTGG+TGG 0.587692 1_4:-17208339 Msa0153640:CDS
GCAAGGAAAGTCAAAGGACA+TGG 0.593446 1_4:-17210472 Msa0153640:five_prime_UTR
AATGAAGTATATAACGAAGC+CGG 0.598651 1_4:-17209488 Msa0153640:five_prime_UTR
CTGTGGCTATTGCAGCTGCA+AGG 0.598880 1_4:-17210489 Msa0153640:five_prime_UTR
TGATGAAGTGAAACTGTGTA+TGG 0.605561 1_4:+17212582 None:intergenic
AGCCTGGGAGTCCTTCATAA+CGG 0.610166 1_4:+17206595 None:intergenic
GAGTCAAACGCCATAGCCAA+TGG 0.611491 1_4:-17212554 Msa0153640:five_prime_UTR
ATTGGAAATGAAGGTTGGGG+TGG 0.611702 1_4:-17212186 Msa0153640:five_prime_UTR
AACTAACCATAATTAGAGCA+GGG 0.615924 1_4:+17209438 None:intergenic
TCATTGTGGCTGCTATTGCA+GGG 0.616121 1_4:-17210420 Msa0153640:intron
GAGTTCATTAAAGCATCTAA+GGG 0.622809 1_4:-17209130 Msa0153640:five_prime_UTR
GCAGCTGCAAGGAAAGTCAA+AGG 0.631757 1_4:-17210478 Msa0153640:five_prime_UTR
ATACAAGTAGCTTGTTCGTG+AGG 0.638345 1_4:-17206402 Msa0153640:three_prime_UTR
AATGGTTTAGCTGGAGCTGG+TGG 0.648458 1_4:-17212536 Msa0153640:five_prime_UTR
ACGCTCTGCTAAGAAGCAAG+GGG 0.664715 1_4:-17209103 Msa0153640:five_prime_UTR
AAAGTCAAAGGACATGGAGA+CGG 0.675024 1_4:-17210466 Msa0153640:five_prime_UTR
AATGTTCGGTTGGCTCATTG+TGG 0.696277 1_4:-17210434 Msa0153640:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAGATAAATACA+AGG + chr1_4:17207808-17207827 None:intergenic 10.0%
!! AATAAAAATATATATTACAC+TGG - chr1_4:17209432-17209451 Msa0153640:intron 10.0%
!! AAAAATATATAAAAATCCAA+AGG + chr1_4:17210809-17210828 None:intergenic 10.0%
!! AATGAAATTATATTAAGTTT+GGG - chr1_4:17211085-17211104 Msa0153640:intron 10.0%
!! TTAATTTACCAAAAAAAAAA+TGG + chr1_4:17212132-17212151 None:intergenic 10.0%
!!! ATTTTTTTTACATTAGAAAA+GGG + chr1_4:17212414-17212433 None:intergenic 10.0%
!! CATATCATCTTAATATTTAT+GGG + chr1_4:17207148-17207167 None:intergenic 15.0%
!! TCATATCATCTTAATATTTA+TGG + chr1_4:17207149-17207168 None:intergenic 15.0%
!!! ATTATTTCTTTGATTTTTTG+AGG + chr1_4:17208087-17208106 None:intergenic 15.0%
!!! TACTAAACGATTTTAAATTA+TGG + chr1_4:17208330-17208349 None:intergenic 15.0%
!!! TTGATAATTAAACATTTAAG+TGG + chr1_4:17208503-17208522 None:intergenic 15.0%
!!! TTTAATTATCAATGTTTTCA+GGG - chr1_4:17208511-17208530 Msa0153640:intron 15.0%
!!! GAAATTTTGATTTGATAAAA+AGG - chr1_4:17209548-17209567 Msa0153640:intron 15.0%
!!! CAAGAGTTTTTTTTAATATT+AGG - chr1_4:17210477-17210496 Msa0153640:five_prime_UTR 15.0%
!! GAATGAAATTATATTAAGTT+TGG - chr1_4:17211084-17211103 Msa0153640:intron 15.0%
!! TTACAAACAAAATAAAGAAA+TGG + chr1_4:17211751-17211770 None:intergenic 15.0%
!!! TTTGTTTGTAAACTTTTAAT+TGG - chr1_4:17211760-17211779 Msa0153640:intron 15.0%
!!! AATGATTTGTAAACATATTA+TGG - chr1_4:17211845-17211864 Msa0153640:intron 15.0%
!!! CATTTTTTTTACATTAGAAA+AGG + chr1_4:17212415-17212434 None:intergenic 15.0%
!!! ATCATTTTTATGTGTTTGTT+TGG + chr1_4:17206306-17206325 None:intergenic 20.0%
!!! CACATAAAAATGATTTTACA+AGG - chr1_4:17206312-17206331 Msa0153640:three_prime_UTR 20.0%
!! TTGAAGATAACTAAGAAAAA+AGG + chr1_4:17206608-17206627 None:intergenic 20.0%
!!! TTGTTTCATTTCTTTTTGAT+TGG - chr1_4:17206803-17206822 Msa0153640:intron 20.0%
!! ATTTCCAATAACCTAATAAA+GGG + chr1_4:17206864-17206883 None:intergenic 20.0%
!! TTAGATAAAAACACTTGAAA+TGG + chr1_4:17206955-17206974 None:intergenic 20.0%
!!! TCTTATAAGTTTGTTTTGTA+AGG - chr1_4:17208047-17208066 Msa0153640:intron 20.0%
!! CAAATAGATAAAGATATTAC+AGG + chr1_4:17208161-17208180 None:intergenic 20.0%
!!! TTTTAAATTATGGCAAAATG+CGG + chr1_4:17208320-17208339 None:intergenic 20.0%
!!! GTTTAATTATCAATGTTTTC+AGG - chr1_4:17208510-17208529 Msa0153640:intron 20.0%
!! TTCATATAATCTTATTATGC+AGG - chr1_4:17208736-17208755 Msa0153640:intron 20.0%
!!! TATGCTTGACATTTTATATT+TGG - chr1_4:17209147-17209166 Msa0153640:five_prime_UTR 20.0%
!!! AGAATACTTTAAAATACAAG+TGG - chr1_4:17210008-17210027 Msa0153640:intron 20.0%
!! GAACTACATAATTAAGAAAA+AGG + chr1_4:17210411-17210430 None:intergenic 20.0%
!!! TATCTAAATGACTATTTTTC+AGG - chr1_4:17210610-17210629 Msa0153640:intron 20.0%
!!! ATCTAAATGACTATTTTTCA+GGG - chr1_4:17210611-17210630 Msa0153640:intron 20.0%
!!! TGTAATACTTAATTTTCCTT+TGG - chr1_4:17210790-17210809 Msa0153640:intron 20.0%
!! TACATAAAAGAGTAACAAAA+GGG - chr1_4:17210922-17210941 Msa0153640:intron 20.0%
!!! AACATCTTAGAATTTTAGTT+GGG + chr1_4:17211156-17211175 None:intergenic 20.0%
!! ACAATACATTAACATTACAA+CGG - chr1_4:17211384-17211403 Msa0153640:intron 20.0%
!! AAAATAAAGAAATGGTTCAA+AGG + chr1_4:17211743-17211762 None:intergenic 20.0%
!! TATAAACCTTCAAAAGATTA+AGG - chr1_4:17211817-17211836 Msa0153640:intron 20.0%
!!! TATAATTTTCCACAATATCA+TGG + chr1_4:17212012-17212031 None:intergenic 20.0%
!! TTCTAATGTAAAAAAAATGC+AGG - chr1_4:17212416-17212435 Msa0153640:intron 20.0%
! AGTTGAATTGAAGTAAAAGT+GGG + chr1_4:17206370-17206389 None:intergenic 25.0%
! TAGTTGAATTGAAGTAAAAG+TGG + chr1_4:17206371-17206390 None:intergenic 25.0%
! AGTTGAATTGAAGTAAAAGT+GGG + chr1_4:17206370-17206389 None:intergenic 25.0%
! TAGTTGAATTGAAGTAAAAG+TGG + chr1_4:17206371-17206390 None:intergenic 25.0%
!! AGAAAAAAGGAAGAGAATTT+TGG + chr1_4:17206595-17206614 None:intergenic 25.0%
!! CATTTTTCTTCAGATTTTTC+AGG - chr1_4:17206768-17206787 Msa0153640:intron 25.0%
!!! TTTTGTTATGACCCTTTATT+AGG - chr1_4:17206850-17206869 Msa0153640:intron 25.0%
! CATTTCCAATAACCTAATAA+AGG + chr1_4:17206865-17206884 None:intergenic 25.0%
! TATTAGGTTATTGGAAATGA+AGG - chr1_4:17206866-17206885 Msa0153640:intron 25.0%
! ACGAAGATATGTTTATAAGT+GGG - chr1_4:17207074-17207093 Msa0153640:intron 25.0%
! CATCTTAATATTTATGGGTT+GGG + chr1_4:17207143-17207162 None:intergenic 25.0%
! TCATCTTAATATTTATGGGT+TGG + chr1_4:17207144-17207163 None:intergenic 25.0%
! TTAAGATGATATGATATGAG+TGG - chr1_4:17207155-17207174 Msa0153640:intron 25.0%
!! TCATTTATAAACACTTGTTG+AGG + chr1_4:17207304-17207323 None:intergenic 25.0%
! TCAACAAGTGTTTATAAATG+AGG - chr1_4:17207303-17207322 Msa0153640:intron 25.0%
! CAACAAGTGTTTATAAATGA+GGG - chr1_4:17207304-17207323 Msa0153640:intron 25.0%
! TGATACAATCTTAAAGTTTG+TGG + chr1_4:17207378-17207397 None:intergenic 25.0%
! AAGCCTATCAAAGATTAATT+TGG - chr1_4:17207398-17207417 Msa0153640:intron 25.0%
! ATGCCAAATTAATCTTTGAT+AGG + chr1_4:17207404-17207423 None:intergenic 25.0%
!! TATCAAAGATTAATTTGGCA+TGG - chr1_4:17207403-17207422 Msa0153640:intron 25.0%
!!! TTTTTTAGGCATGTACTTTA+TGG + chr1_4:17207501-17207520 None:intergenic 25.0%
!!! CTGGGCTATAATTTTTTTTT+AGG + chr1_4:17207515-17207534 None:intergenic 25.0%
!! TGTTTTATGCCTATTAGAAT+TGG - chr1_4:17207673-17207692 Msa0153640:intron 25.0%
!! GTTTTATGCCTATTAGAATT+GGG - chr1_4:17207674-17207693 Msa0153640:intron 25.0%
!!! TTTCTTTGATTTTTTGAGGT+GGG + chr1_4:17208083-17208102 None:intergenic 25.0%
!!! ATTTCTTTGATTTTTTGAGG+TGG + chr1_4:17208084-17208103 None:intergenic 25.0%
! TTTAAATTATGGCAAAATGC+GGG + chr1_4:17208319-17208338 None:intergenic 25.0%
!!! CTCGTATTATTTTTCGTTTA+AGG + chr1_4:17208407-17208426 None:intergenic 25.0%
!!! GTATGATGTGTTTTTTGTTT+TGG - chr1_4:17208466-17208485 Msa0153640:intron 25.0%
!!! TGTTTTTTGTTTTGGATTTC+AGG - chr1_4:17208474-17208493 Msa0153640:intron 25.0%
!!! CTATCAAGTTTTTAAGAACA+AGG - chr1_4:17208549-17208568 Msa0153640:intron 25.0%
! ATGAATGAACACATAGAATT+CGG + chr1_4:17208721-17208740 None:intergenic 25.0%
! TTCTCATATTTGTCATCTTT+CGG - chr1_4:17208821-17208840 Msa0153640:intron 25.0%
! CTCTTATTCACTTATATAGA+GGG + chr1_4:17209017-17209036 None:intergenic 25.0%
! ACTCTTATTCACTTATATAG+AGG + chr1_4:17209018-17209037 None:intergenic 25.0%
!! TTTTAAGCATTCGAAGTTTA+TGG + chr1_4:17209056-17209075 None:intergenic 25.0%
!! TATATAGTTTGTGGTAACAT+CGG + chr1_4:17209103-17209122 None:intergenic 25.0%
! AATTTCAACATGAAAGATCA+TGG + chr1_4:17209395-17209414 None:intergenic 25.0%
! AAATGTGAATTGACAATCTT+TGG + chr1_4:17209488-17209507 None:intergenic 25.0%
! GAACATATCAATAAGAAGAT+TGG + chr1_4:17209652-17209671 None:intergenic 25.0%
! ATACCTATCATGAAAATTCT+CGG + chr1_4:17209880-17209899 None:intergenic 25.0%
!! ATAAAACGAAGTACTTGATA+TGG + chr1_4:17210373-17210392 None:intergenic 25.0%
! GTCAAGTATAAAGTTTACTT+AGG - chr1_4:17210518-17210537 Msa0153640:five_prime_UTR 25.0%
! AATAACTCATTAAGATACTC+AGG - chr1_4:17210746-17210765 Msa0153640:intron 25.0%
!!! GCTTTATATTTTCAAGGAAA+GGG + chr1_4:17210842-17210861 None:intergenic 25.0%
!!! AGCTTTATATTTTCAAGGAA+AGG + chr1_4:17210843-17210862 None:intergenic 25.0%
!!! TTCACAGCTTTATATTTTCA+AGG + chr1_4:17210848-17210867 None:intergenic 25.0%
! ACTTCATTAAACAACAGTTA+AGG + chr1_4:17210896-17210915 None:intergenic 25.0%
! GTACATAAAAGAGTAACAAA+AGG - chr1_4:17210921-17210940 Msa0153640:intron 25.0%
! ACATAAAAGAGTAACAAAAG+GGG - chr1_4:17210923-17210942 Msa0153640:intron 25.0%
!!! CAACATCTTAGAATTTTAGT+TGG + chr1_4:17211157-17211176 None:intergenic 25.0%
! CACTTATTATCATACTTTCA+AGG + chr1_4:17211229-17211248 None:intergenic 25.0%
!! CTTGAAAGTATGATAATAAG+TGG - chr1_4:17211227-17211246 Msa0153640:intron 25.0%
! TCTAATGAAATTTGAATCCA+GGG + chr1_4:17211609-17211628 None:intergenic 25.0%
!! CATTAGAGTTTTACATTTGT+AGG - chr1_4:17211622-17211641 Msa0153640:intron 25.0%
!!! TGTAGGACTTATTTTTTTGT+TGG - chr1_4:17211639-17211658 Msa0153640:intron 25.0%
!!! TTTTTTGTTGGCTGAAATTA+TGG - chr1_4:17211651-17211670 Msa0153640:intron 25.0%
!! TTTAAGCCTTAATCTTTTGA+AGG + chr1_4:17211826-17211845 None:intergenic 25.0%
! TTTATCTACAACTTTAGTCA+AGG - chr1_4:17211969-17211988 Msa0153640:intron 25.0%
! TTTACCAAAAAAAAAATGGC+AGG + chr1_4:17212128-17212147 None:intergenic 25.0%
! AAAATAGTGCACTATATTCA+GGG + chr1_4:17212240-17212259 None:intergenic 25.0%
! AAAAATAGTGCACTATATTC+AGG + chr1_4:17212241-17212260 None:intergenic 25.0%
! GATATTCGAAGATATATAAC+AGG + chr1_4:17212330-17212349 None:intergenic 25.0%
! TATCTTCGAATATCAAATCT+AGG - chr1_4:17212336-17212355 Msa0153640:five_prime_UTR 25.0%
! AAATACATACTTTGACAAAG+AGG + chr1_4:17212391-17212410 None:intergenic 25.0%
! TTCTGTATTATTCATGGTAA+AGG - chr1_4:17212535-17212554 Msa0153640:five_prime_UTR 25.0%
! TTATGTGTTTGTTTGGTTCA+CGG + chr1_4:17206299-17206318 None:intergenic 30.0%
CTGAGATATGAATATTGCAA+TGG + chr1_4:17206656-17206675 None:intergenic 30.0%
CATTGCAATATTCATATCTC+AGG - chr1_4:17206654-17206673 Msa0153640:intron 30.0%
ATGACCCTTTATTAGGTTAT+TGG - chr1_4:17206857-17206876 Msa0153640:intron 30.0%
TAAAGCCTAAAGCAACTATT+GGG + chr1_4:17206984-17207003 None:intergenic 30.0%
ATAAAGCCTAAAGCAACTAT+TGG + chr1_4:17206985-17207004 None:intergenic 30.0%
TATTACTAGTATGAGACAGA+GGG + chr1_4:17207017-17207036 None:intergenic 30.0%
TTATTACTAGTATGAGACAG+AGG + chr1_4:17207018-17207037 None:intergenic 30.0%
CACGAAGATATGTTTATAAG+TGG - chr1_4:17207073-17207092 Msa0153640:intron 30.0%
CGAAGATATGTTTATAAGTG+GGG - chr1_4:17207075-17207094 Msa0153640:intron 30.0%
CCTTACAAAATCTACTTCTA+AGG + chr1_4:17207110-17207129 None:intergenic 30.0%
! CCTTAGAAGTAGATTTTGTA+AGG - chr1_4:17207107-17207126 Msa0153640:intron 30.0%
!!! GTTCCACATTTTTAGTGATA+TGG - chr1_4:17207278-17207297 Msa0153640:intron 30.0%
CAATCTTAAAGTTTGTGGTT+GGG + chr1_4:17207373-17207392 None:intergenic 30.0%
ACAATCTTAAAGTTTGTGGT+TGG + chr1_4:17207374-17207393 None:intergenic 30.0%
TAGTACTTAGTAGTACTACT+GGG + chr1_4:17207533-17207552 None:intergenic 30.0%
TTAGTACTTAGTAGTACTAC+TGG + chr1_4:17207534-17207553 None:intergenic 30.0%
ATAAAACAAGACAACAGAAG+AGG + chr1_4:17207661-17207680 None:intergenic 30.0%
! ATGCTCTAGATGTTTAGTTA+TGG - chr1_4:17207948-17207967 Msa0153640:intron 30.0%
! TGCTCTAGATGTTTAGTTAT+GGG - chr1_4:17207949-17207968 Msa0153640:intron 30.0%
CAAAACAAACTTATAAGACG+AGG + chr1_4:17208045-17208064 None:intergenic 30.0%
ACTATGGTAGTAATATACGA+TGG + chr1_4:17208192-17208211 None:intergenic 30.0%
CGGACAGTAAATTAAAACTA+TGG + chr1_4:17208208-17208227 None:intergenic 30.0%
TATAGAGTGTAACACTTCAA+AGG + chr1_4:17208685-17208704 None:intergenic 30.0%
TGAATGAACACATAGAATTC+GGG + chr1_4:17208720-17208739 None:intergenic 30.0%
! TTTTGTTCACAAACCCAATT+TGG - chr1_4:17208769-17208788 Msa0153640:intron 30.0%
TTTGTTCACAAACCCAATTT+GGG - chr1_4:17208770-17208789 Msa0153640:intron 30.0%
TTCTTATGTAGTCTACTTAC+TGG + chr1_4:17208881-17208900 None:intergenic 30.0%
AAGCATGGATATATAGTTTG+TGG + chr1_4:17209112-17209131 None:intergenic 30.0%
TCAAGCAGAAAGAAAAATCT+TGG - chr1_4:17209185-17209204 Msa0153640:intron 30.0%
AGGAAAAGAAAGAAGCTTTA+AGG - chr1_4:17209208-17209227 Msa0153640:intron 30.0%
!! AAAGAAAGAAGCTTTAAGGA+AGG - chr1_4:17209212-17209231 Msa0153640:intron 30.0%
ATCATGGATGTTATTGAAAG+AGG + chr1_4:17209379-17209398 None:intergenic 30.0%
!! GATTTCCTTCACTTTTATCA+AGG - chr1_4:17209518-17209537 Msa0153640:intron 30.0%
!! ATTAGCCTTGATAAAAGTGA+AGG + chr1_4:17209526-17209545 None:intergenic 30.0%
AATGAAGTATATAACGAAGC+CGG - chr1_4:17209573-17209592 Msa0153640:intron 30.0%
TTTCCAAAATCCAACTATAC+CGG + chr1_4:17209595-17209614 None:intergenic 30.0%
AACTAACCATAATTAGAGCA+GGG + chr1_4:17209626-17209645 None:intergenic 30.0%
AAACTAACCATAATTAGAGC+AGG + chr1_4:17209627-17209646 None:intergenic 30.0%
TAGTACAAAATCTTGCCAAA+TGG + chr1_4:17209735-17209754 None:intergenic 30.0%
! AAACCGAGAATTTTCATGAT+AGG - chr1_4:17209874-17209893 Msa0153640:five_prime_UTR 30.0%
TAAATCATAAACTGGATGGA+TGG + chr1_4:17209908-17209927 None:intergenic 30.0%
AACTCTCGTAAATCATAAAC+TGG + chr1_4:17209916-17209935 None:intergenic 30.0%
! AGAGTTCATTAAAGCATCTA+AGG - chr1_4:17209930-17209949 Msa0153640:intron 30.0%
! GAGTTCATTAAAGCATCTAA+GGG - chr1_4:17209931-17209950 Msa0153640:intron 30.0%
AATCCTCTTGTCATTCAAAA+AGG - chr1_4:17210110-17210129 Msa0153640:intron 30.0%
! GTCATTCAAAAAGGTCTTTT+TGG - chr1_4:17210119-17210138 Msa0153640:intron 30.0%
!! TTCAAAAAGGTCTTTTTGGT+TGG - chr1_4:17210123-17210142 Msa0153640:intron 30.0%
! GAACTTAAGATTTCTAGGTA+AGG + chr1_4:17210270-17210289 None:intergenic 30.0%
CCAAATATTGGAATATCGAT+AGG + chr1_4:17210333-17210352 None:intergenic 30.0%
CCTATCGATATTCCAATATT+TGG - chr1_4:17210330-17210349 Msa0153640:intron 30.0%
TAATTTATTATCACGACAGC+AGG - chr1_4:17210984-17211003 Msa0153640:intron 30.0%
TTATGTTAAGAATCCCACAT+TGG - chr1_4:17211047-17211066 Msa0153640:intron 30.0%
AACTCAAAACCTTACATATC+TGG + chr1_4:17211130-17211149 None:intergenic 30.0%
!!! AGATATGTAAGGTTTTGAGT+TGG - chr1_4:17211129-17211148 Msa0153640:intron 30.0%
!!! GATATGTAAGGTTTTGAGTT+GGG - chr1_4:17211130-17211149 Msa0153640:intron 30.0%
! GAAAGTATGATAATAAGTGG+AGG - chr1_4:17211230-17211249 Msa0153640:intron 30.0%
TAATATGACCCAATTCAAGT+AGG - chr1_4:17211447-17211466 Msa0153640:intron 30.0%
AATATGACCCAATTCAAGTA+GGG - chr1_4:17211448-17211467 Msa0153640:intron 30.0%
AAAGCTAGAGATAATGAAAG+AGG - chr1_4:17211493-17211512 Msa0153640:intron 30.0%
TAGAGATAATGAAAGAGGAA+AGG - chr1_4:17211498-17211517 Msa0153640:intron 30.0%
CTCTAATGAAATTTGAATCC+AGG + chr1_4:17211610-17211629 None:intergenic 30.0%
TTGACAGAAAATAACAAAGC+TGG + chr1_4:17211793-17211812 None:intergenic 30.0%
TGGATGTAATATACCCTTAA+CGG - chr1_4:17211865-17211884 Msa0153640:intron 30.0%
TAAAGTTTCCTTACCGTTAA+GGG + chr1_4:17211881-17211900 None:intergenic 30.0%
TTAAAGTTTCCTTACCGTTA+AGG + chr1_4:17211882-17211901 None:intergenic 30.0%
ATAGTCAGATGAGATTGATA+TGG - chr1_4:17212029-17212048 Msa0153640:intron 30.0%
AGATTACTGAGATCCATTTA+AGG - chr1_4:17212192-17212211 Msa0153640:five_prime_UTR 30.0%
GATTACTGAGATCCATTTAA+GGG - chr1_4:17212193-17212212 Msa0153640:intron 30.0%
ATTACTGAGATCCATTTAAG+GGG - chr1_4:17212194-17212213 Msa0153640:intron 30.0%
CTTAAAATGATCCGTTATGA+AGG - chr1_4:17212455-17212474 Msa0153640:intron 30.0%
TGTATTATTCATGGTAAAGG+AGG - chr1_4:17212538-17212557 Msa0153640:five_prime_UTR 30.0%
TGATGAAGTGAAACTGTGTA+TGG + chr1_4:17206482-17206501 None:intergenic 35.0%
!!! ATTTTGGTTACAGCTTGAAG+TGG + chr1_4:17206579-17206598 None:intergenic 35.0%
TAAGTGTTCTCTCAGTTTGT+TGG + chr1_4:17206690-17206709 None:intergenic 35.0%
AAACTGAGAGAACACTTAAG+AGG - chr1_4:17206692-17206711 Msa0153640:intron 35.0%
AGAAGCAGTAGTTATTGTGT+TGG + chr1_4:17206737-17206756 None:intergenic 35.0%
AGGTTATTGGAAATGAAGGT+TGG - chr1_4:17206870-17206889 Msa0153640:intron 35.0%
GGTTATTGGAAATGAAGGTT+GGG - chr1_4:17206871-17206890 Msa0153640:intron 35.0%
GTTATTGGAAATGAAGGTTG+GGG - chr1_4:17206872-17206891 Msa0153640:intron 35.0%
!! CAAAATCTACTTCTAAGGTG+AGG + chr1_4:17207105-17207124 None:intergenic 35.0%
TCCTAATAAGTTTCCGCTAT+CGG - chr1_4:17207202-17207221 Msa0153640:intron 35.0%
AGGCCATATCACTAAAAATG+TGG + chr1_4:17207284-17207303 None:intergenic 35.0%
TAACACAACCACACAAAAAG+CGG + chr1_4:17207348-17207367 None:intergenic 35.0%
TTTAGGCATGTACTTTATGG+AGG + chr1_4:17207498-17207517 None:intergenic 35.0%
GTGGTATCAGAAAGACAATA+AGG + chr1_4:17207575-17207594 None:intergenic 35.0%
AGAAGAAAAGGAAAGTCTGA+TGG + chr1_4:17207617-17207636 None:intergenic 35.0%
AGAGGAAAAGGAAATCAAAC+CGG + chr1_4:17207643-17207662 None:intergenic 35.0%
!!! TGTTAGGTGGGTGTTTTTTT+GGG - chr1_4:17207712-17207731 Msa0153640:intron 35.0%
AAATCACTACCATATGCATG+AGG + chr1_4:17207754-17207773 None:intergenic 35.0%
!! ATGGTAGTGATTTTCACCTT+TGG - chr1_4:17207761-17207780 Msa0153640:intron 35.0%
!! TGGTAGTGATTTTCACCTTT+GGG - chr1_4:17207762-17207781 Msa0153640:intron 35.0%
ATGTTTAGTTATGGGTGTGA+GGG - chr1_4:17207957-17207976 Msa0153640:intron 35.0%
TTACAGTTGTAATGTCGTTG+TGG + chr1_4:17208272-17208291 None:intergenic 35.0%
! ACACATCATACTGTGTTTTC+CGG + chr1_4:17208457-17208476 None:intergenic 35.0%
!! AGTTTTTAAGAACAAGGCTG+TGG - chr1_4:17208555-17208574 Msa0153640:intron 35.0%
!!! GCTGCAGTTGTTTTTCTATT+AGG - chr1_4:17208958-17208977 Msa0153640:CDS 35.0%
ATGTCAAGCATAACCAACAA+TGG + chr1_4:17209139-17209158 None:intergenic 35.0%
AGCAGAAAGAAAAATCTTGG+AGG - chr1_4:17209188-17209207 Msa0153640:intron 35.0%
TAGCTTAACAGGTTCAACTT+TGG - chr1_4:17209248-17209267 Msa0153640:intron 35.0%
!! GGTATAGTTGGATTTTGGAA+AGG - chr1_4:17209594-17209613 Msa0153640:intron 35.0%
TACAAAATCTTGCCAAATGG+AGG + chr1_4:17209732-17209751 None:intergenic 35.0%
CTCGTAAATCATAAACTGGA+TGG + chr1_4:17209912-17209931 None:intergenic 35.0%
ACAAGTGGAAATCATGTGTT+AGG - chr1_4:17210023-17210042 Msa0153640:intron 35.0%
! AGACCTTTTTGAATGACAAG+AGG + chr1_4:17210116-17210135 None:intergenic 35.0%
TTACCTTGACAACTAGCAAT+GGG + chr1_4:17210185-17210204 None:intergenic 35.0%
TGTCAAGGTAAGTTCTTAGA+TGG - chr1_4:17210194-17210213 Msa0153640:intron 35.0%
CTACATGAACGTCCAAATAT+TGG + chr1_4:17210345-17210364 None:intergenic 35.0%
CTAGCATACATGAGAGTTAA+CGG + chr1_4:17210658-17210677 None:intergenic 35.0%
ACAACAGTTAAGGAAGTTCA+AGG + chr1_4:17210886-17210905 None:intergenic 35.0%
CTAGAGAGCAATACTCAAAT+GGG + chr1_4:17211184-17211203 None:intergenic 35.0%
TCTAGAGAGCAATACTCAAA+TGG + chr1_4:17211185-17211204 None:intergenic 35.0%
CAGTACTCTACTCAAAATCA+AGG + chr1_4:17211416-17211435 None:intergenic 35.0%
!!! TTTTGAGTAGAGTACTGACT+AGG - chr1_4:17211419-17211438 Msa0153640:intron 35.0%
!! TTTGAGTAGAGTACTGACTA+GGG - chr1_4:17211420-17211439 Msa0153640:intron 35.0%
GTCAGACTCGAAAAATTAGT+GGG - chr1_4:17211470-17211489 Msa0153640:intron 35.0%
! AAGGACCGAATTCTTTTTCT+GGG - chr1_4:17211532-17211551 Msa0153640:intron 35.0%
TGATCCCCAGAAAAAGAATT+CGG + chr1_4:17211540-17211559 None:intergenic 35.0%
TGAAATTTGAATCCAGGGAA+AGG + chr1_4:17211604-17211623 None:intergenic 35.0%
AAATGGTTCAAAGGTTCTCA+AGG + chr1_4:17211734-17211753 None:intergenic 35.0%
GTAATATACCCTTAACGGTA+AGG - chr1_4:17211870-17211889 Msa0153640:intron 35.0%
AGCTTGAAATGCACGAAAAA+GGG + chr1_4:17211925-17211944 None:intergenic 35.0%
TAGCTTGAAATGCACGAAAA+AGG + chr1_4:17211926-17211945 None:intergenic 35.0%
CACAGTAATCCATGATATTG+TGG - chr1_4:17212000-17212019 Msa0153640:intron 35.0%
ACTCGTTGTCAATTCCATTA+TGG - chr1_4:17212052-17212071 Msa0153640:intron 35.0%
CAATTCCATTATGGTTGCAT+AGG - chr1_4:17212061-17212080 Msa0153640:intron 35.0%
TTATGCCTATGCAACCATAA+TGG + chr1_4:17212069-17212088 None:intergenic 35.0%
!!! GTCACCTGCCATTTTTTTTT+TGG - chr1_4:17212121-17212140 Msa0153640:intron 35.0%
GTGATTCTCATACTACACTA+AGG - chr1_4:17212297-17212316 Msa0153640:five_prime_UTR 35.0%
TCATCCCTTTATAAAAGCCT+GGG + chr1_4:17212484-17212503 None:intergenic 35.0%
! TGCTGCTTCTGTATTATTCA+TGG - chr1_4:17212529-17212548 Msa0153640:five_prime_UTR 35.0%
ACTACTGCTTCTTCTTCTTC+TGG - chr1_4:17206745-17206764 Msa0153640:intron 40.0%
GTGTCATCTCTCATCTAATG+CGG + chr1_4:17207056-17207075 None:intergenic 40.0%
AGTGGATATCCAAGAACTGT+TGG - chr1_4:17207173-17207192 Msa0153640:intron 40.0%
!! GATAGCGGAAACTTATTAGG+AGG + chr1_4:17207203-17207222 None:intergenic 40.0%
CCTAATAAGTTTCCGCTATC+GGG - chr1_4:17207203-17207222 Msa0153640:intron 40.0%
TTAACATACCCTTCAAGCAC+AGG + chr1_4:17207256-17207275 None:intergenic 40.0%
! ACTTTCCTTTTCTTCTTCCC+CGG - chr1_4:17207621-17207640 Msa0153640:intron 40.0%
AGGAAAAGGAAATCAAACCG+GGG + chr1_4:17207641-17207660 None:intergenic 40.0%
GAGGAAAAGGAAATCAAACC+GGG + chr1_4:17207642-17207661 None:intergenic 40.0%
CAAGACAACAGAAGAGGAAA+AGG + chr1_4:17207655-17207674 None:intergenic 40.0%
CAAGAGGACCCAATTCTAAT+AGG + chr1_4:17207685-17207704 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - chr1_4:17207700-17207719 Msa0153640:intron 40.0%
!!! GTGTTAGGTGGGTGTTTTTT+TGG - chr1_4:17207711-17207730 Msa0153640:intron 40.0%
! TTTGAGGTTCCTCATGCATA+TGG - chr1_4:17207742-17207761 Msa0153640:intron 40.0%
TATATGTGCAATACGCCCAA+AGG + chr1_4:17207780-17207799 None:intergenic 40.0%
TTTGGGCGTATTGCACATAT+AGG - chr1_4:17207779-17207798 Msa0153640:intron 40.0%
TTGGGCGTATTGCACATATA+GGG - chr1_4:17207780-17207799 Msa0153640:intron 40.0%
GATGTTTAGTTATGGGTGTG+AGG - chr1_4:17207956-17207975 Msa0153640:intron 40.0%
TGTTTAGTTATGGGTGTGAG+GGG - chr1_4:17207958-17207977 Msa0153640:intron 40.0%
CATCGTTTATCCAATGTGGT+GGG + chr1_4:17207998-17208017 None:intergenic 40.0%
! GAGTATTCGTTTCTAAGAGC+CGG - chr1_4:17208435-17208454 Msa0153640:intron 40.0%
AAAGTCAAAGGACATGGAGA+CGG - chr1_4:17208595-17208614 Msa0153640:intron 40.0%
TTATGTACCCGACAATACAG+TGG - chr1_4:17208936-17208955 Msa0153640:CDS 40.0%
ACATCGGCAAAAGCAGATTA+TGG + chr1_4:17209087-17209106 None:intergenic 40.0%
TCCATGCTTAAGTCCATTGT+TGG - chr1_4:17209123-17209142 Msa0153640:five_prime_UTR 40.0%
! ACCAACAATGGACTTAAGCA+TGG + chr1_4:17209127-17209146 None:intergenic 40.0%
TCTACAAAGCCTCAACCATT+TGG - chr1_4:17209294-17209313 Msa0153640:intron 40.0%
CTACAAAGCCTCAACCATTT+GGG - chr1_4:17209295-17209314 Msa0153640:intron 40.0%
TGTATAGTCCCAAATGGTTG+AGG + chr1_4:17209306-17209325 None:intergenic 40.0%
ACAGCATGTATAGTCCCAAA+TGG + chr1_4:17209312-17209331 None:intergenic 40.0%
TATAACGAAGCCGGTATAGT+TGG - chr1_4:17209582-17209601 Msa0153640:intron 40.0%
! AAGCCGGTATAGTTGGATTT+TGG - chr1_4:17209589-17209608 Msa0153640:intron 40.0%
TGTCATCCCTGCTCTAATTA+TGG - chr1_4:17209617-17209636 Msa0153640:intron 40.0%
!! TAGCGTAGCAGAGTTTGTTA+TGG + chr1_4:17209688-17209707 None:intergenic 40.0%
GTTGGAGCAATAGCAAAACT+TGG - chr1_4:17210141-17210160 Msa0153640:intron 40.0%
ATACCCATTGCTAGTTGTCA+AGG - chr1_4:17210179-17210198 Msa0153640:intron 40.0%
CTTACCTTGACAACTAGCAA+TGG + chr1_4:17210186-17210205 None:intergenic 40.0%
CTTCAAGCAAAACAGGAGAT+TGG - chr1_4:17210719-17210738 Msa0153640:intron 40.0%
TGCTTTATCACGTCCAATGT+GGG + chr1_4:17211063-17211082 None:intergenic 40.0%
ATGCTTTATCACGTCCAATG+TGG + chr1_4:17211064-17211083 None:intergenic 40.0%
! CCTTACATATCTGGCTTGTA+AGG + chr1_4:17211121-17211140 None:intergenic 40.0%
CCTTACAAGCCAGATATGTA+AGG - chr1_4:17211118-17211137 Msa0153640:intron 40.0%
GCTCTCTAGATATCCTTTAC+CGG - chr1_4:17211195-17211214 Msa0153640:intron 40.0%
CTCTCTAGATATCCTTTACC+GGG - chr1_4:17211196-17211215 Msa0153640:intron 40.0%
CAAAATGAGCTTGTAAGACG+AGG + chr1_4:17211260-17211279 None:intergenic 40.0%
! CTCGTCTTACAAGCTCATTT+TGG - chr1_4:17211258-17211277 Msa0153640:intron 40.0%
! GTCTTACAAGCTCATTTTGG+AGG - chr1_4:17211261-17211280 Msa0153640:intron 40.0%
AGTCTGACCCTACTTGAATT+GGG + chr1_4:17211458-17211477 None:intergenic 40.0%
GGTCAGACTCGAAAAATTAG+TGG - chr1_4:17211469-17211488 Msa0153640:intron 40.0%
TGAAAGAGGAAAGGATCAAG+TGG - chr1_4:17211507-17211526 Msa0153640:intron 40.0%
! CAAGGACCGAATTCTTTTTC+TGG - chr1_4:17211531-17211550 Msa0153640:intron 40.0%
! AGGACCGAATTCTTTTTCTG+GGG - chr1_4:17211533-17211552 Msa0153640:intron 40.0%
AATTTGAATCCAGGGAAAGG+AGG + chr1_4:17211601-17211620 None:intergenic 40.0%
ATGGATCTCAGTAATCTCGA+GGG + chr1_4:17212189-17212208 None:intergenic 40.0%
AATGGATCTCAGTAATCTCG+AGG + chr1_4:17212190-17212209 None:intergenic 40.0%
! GACTCCCAGGCTTTTATAAA+GGG - chr1_4:17212477-17212496 Msa0153640:intron 40.0%
CTCATCCCTTTATAAAAGCC+TGG + chr1_4:17212485-17212504 None:intergenic 40.0%
!! ATACAAGTAGCTTGTTCGTG+AGG - chr1_4:17212659-17212678 Msa0153640:intron 40.0%
! TTCGTGAGGTGTTAGTTTAG+TGG - chr1_4:17212673-17212692 Msa0153640:intron 40.0%
! TCCAGCTAAACCATTGGCTA+TGG + chr1_4:17206520-17206539 None:intergenic 45.0%
ATTGGAAATGAAGGTTGGGG+TGG - chr1_4:17206875-17206894 Msa0153640:intron 45.0%
GGTCTTAAGCCTTCTCTTCT+TGG - chr1_4:17206908-17206927 Msa0153640:intron 45.0%
! CTGCACCCAATAGTTGCTTT+AGG - chr1_4:17206976-17206995 Msa0153640:intron 45.0%
!! CCCGATAGCGGAAACTTATT+AGG + chr1_4:17207206-17207225 None:intergenic 45.0%
ATGTCCATTCCTGTGCTTGA+AGG - chr1_4:17207244-17207263 Msa0153640:intron 45.0%
TGTCCATTCCTGTGCTTGAA+GGG - chr1_4:17207245-17207264 Msa0153640:intron 45.0%
ATACCCTTCAAGCACAGGAA+TGG + chr1_4:17207251-17207270 None:intergenic 45.0%
AAAAAGCGGCTTATGAGGTG+AGG + chr1_4:17207334-17207353 None:intergenic 45.0%
CACACAAAAAGCGGCTTATG+AGG + chr1_4:17207339-17207358 None:intergenic 45.0%
!!! CTCATAAGCCGCTTTTTGTG+TGG - chr1_4:17207337-17207356 Msa0153640:intron 45.0%
GCATGGTATCAGAGCTTATC+AGG - chr1_4:17207420-17207439 Msa0153640:intron 45.0%
GCTTATCAGGTTTCTGCTCA+AGG - chr1_4:17207433-17207452 Msa0153640:intron 45.0%
TGCAAAGAGCTCAATGGAAC+TGG - chr1_4:17207471-17207490 Msa0153640:intron 45.0%
GCAAAGAGCTCAATGGAACT+GGG - chr1_4:17207472-17207491 Msa0153640:intron 45.0%
! AGTGATAGTGATGGAACGTG+TGG + chr1_4:17207594-17207613 None:intergenic 45.0%
! GTCTGATGGAGTGATAGTGA+TGG + chr1_4:17207603-17207622 None:intergenic 45.0%
TCAAACCGGGGAAGAAGAAA+AGG + chr1_4:17207629-17207648 None:intergenic 45.0%
! GAATTGGGTCCTCTTGCTTT+TGG - chr1_4:17207689-17207708 Msa0153640:intron 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG - chr1_4:17207696-17207715 Msa0153640:intron 45.0%
CACCTAACACCAAAAGCAAG+AGG + chr1_4:17207701-17207720 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG - chr1_4:17207699-17207718 Msa0153640:intron 45.0%
!!! TAGGTGGGTGTTTTTTTGGG+AGG - chr1_4:17207715-17207734 Msa0153640:intron 45.0%
!!! AGGTGGGTGTTTTTTTGGGA+GGG - chr1_4:17207716-17207735 Msa0153640:intron 45.0%
!!! TTTTTTGGGAGGGTGGTTTG+AGG - chr1_4:17207726-17207745 Msa0153640:intron 45.0%
GCATGACAGATAGCAGAACA+GGG + chr1_4:17207932-17207951 None:intergenic 45.0%
AGCATGACAGATAGCAGAAC+AGG + chr1_4:17207933-17207952 None:intergenic 45.0%
TGTTAAGAGTCCCACCACAT+TGG - chr1_4:17207985-17208004 Msa0153640:intron 45.0%
CCATCGTTTATCCAATGTGG+TGG + chr1_4:17207999-17208018 None:intergenic 45.0%
CCACCACATTGGATAAACGA+TGG - chr1_4:17207996-17208015 Msa0153640:intron 45.0%
GAGCCATCGTTTATCCAATG+TGG + chr1_4:17208002-17208021 None:intergenic 45.0%
ACTGTCCGCAACCATAATTG+CGG - chr1_4:17208220-17208239 Msa0153640:intron 45.0%
TTGCATCGTGACCGCAATTA+TGG + chr1_4:17208234-17208253 None:intergenic 45.0%
TAATTGCGGTCACGATGCAA+AGG - chr1_4:17208234-17208253 Msa0153640:intron 45.0%
! GGTCACGATGCAAAGGTTTT+TGG - chr1_4:17208241-17208260 Msa0153640:intron 45.0%
GCGGGAAAATGTTGTCAATG+TGG + chr1_4:17208301-17208320 None:intergenic 45.0%
ACAGCAGCCAATGTGAATCA+GGG + chr1_4:17208357-17208376 None:intergenic 45.0%
AACAGCAGCCAATGTGAATC+AGG + chr1_4:17208358-17208377 None:intergenic 45.0%
GCAAGGAAAGTCAAAGGACA+TGG - chr1_4:17208589-17208608 Msa0153640:intron 45.0%
GACGGTACTGTTGGAATGTT+CGG - chr1_4:17208613-17208632 Msa0153640:intron 45.0%
GTACTGTTGGAATGTTCGGT+TGG - chr1_4:17208617-17208636 Msa0153640:intron 45.0%
! AATGTTCGGTTGGCTCATTG+TGG - chr1_4:17208627-17208646 Msa0153640:intron 45.0%
TCATTGTGGCTGCTATTGCA+GGG - chr1_4:17208641-17208660 Msa0153640:intron 45.0%
GAGTCACGAGAACCCAAATT+GGG + chr1_4:17208785-17208804 None:intergenic 45.0%
GTCGGGTACATAAGAACGAT+TGG + chr1_4:17208929-17208948 None:intergenic 45.0%
AACTGCAGCCACTGTATTGT+CGG + chr1_4:17208947-17208966 None:intergenic 45.0%
! CTTGCCAAATGGAGGCATAA+CGG + chr1_4:17209724-17209743 None:intergenic 45.0%
AAACGCTCTGCTAAGAAGCA+AGG - chr1_4:17209956-17209975 Msa0153640:intron 45.0%
AACGCTCTGCTAAGAAGCAA+GGG - chr1_4:17209957-17209976 Msa0153640:intron 45.0%
CACGAGTGTAACTGCTTTAG+AGG - chr1_4:17209982-17210001 Msa0153640:intron 45.0%
TGATTCGTTCCTTGCAGTCA+AGG - chr1_4:17210696-17210715 Msa0153640:intron 45.0%
GTCAAGGCTTCAAGCAAAAC+AGG - chr1_4:17210712-17210731 Msa0153640:intron 45.0%
CAAGCAAAACAGGAGATTGG+TGG - chr1_4:17210722-17210741 Msa0153640:intron 45.0%
AGCAGGATCTCATTAGCAAG+AGG - chr1_4:17211001-17211020 Msa0153640:intron 45.0%
TACTTTCAAGGCTTCACACC+CGG + chr1_4:17211217-17211236 None:intergenic 45.0%
GAGTCTGACCCTACTTGAAT+TGG + chr1_4:17211459-17211478 None:intergenic 45.0%
AGGAAAGGATCAAGTGGTCA+AGG - chr1_4:17211513-17211532 Msa0153640:intron 45.0%
GAAAAAGCTTGACCAGTAGC+AGG + chr1_4:17211579-17211598 None:intergenic 45.0%
!! AAGCTTTTTCCTCCTTTCCC+TGG - chr1_4:17211589-17211608 Msa0153640:intron 45.0%
GAAATGCACGAAAAAGGGAG+CGG + chr1_4:17211920-17211939 None:intergenic 45.0%
TTAGTGTCAGTAGTTACGCG+CGG + chr1_4:17212164-17212183 None:intergenic 45.0%
TGGATCTCAGTAATCTCGAG+GGG + chr1_4:17212188-17212207 None:intergenic 45.0%
! GGACTCCCAGGCTTTTATAA+AGG - chr1_4:17212476-17212495 Msa0153640:intron 45.0%
!! GGTAAAGGAGGAGCTTGTTA+AGG - chr1_4:17212550-17212569 Msa0153640:five_prime_UTR 45.0%
!!! AATATATATTTTTATTACAA+TGG + chr1_4:17209428-17209447 None:intergenic 5.0%
!! AATAAATTAAAAAAAAAATC+AGG + chr1_4:17210973-17210992 None:intergenic 5.0%
GAGTCAAACGCCATAGCCAA+TGG - chr1_4:17206507-17206526 Msa0153640:CDS 50.0%
GCCATAGCCAATGGTTTAGC+TGG - chr1_4:17206516-17206535 Msa0153640:CDS 50.0%
ACCAGCTCCAGCTAAACCAT+TGG + chr1_4:17206526-17206545 None:intergenic 50.0%
AATGGTTTAGCTGGAGCTGG+TGG - chr1_4:17206525-17206544 Msa0153640:CDS 50.0%
GCAGCAGTTCCAAGAAGAGA+AGG + chr1_4:17206920-17206939 None:intergenic 50.0%
! TCTTGGAACTGCTGCTTCTC+AGG - chr1_4:17206925-17206944 Msa0153640:intron 50.0%
GGAGGTGATCCAACAGTTCT+TGG + chr1_4:17207185-17207204 None:intergenic 50.0%
ATCAGGTTTCTGCTCAAGGC+CGG - chr1_4:17207437-17207456 Msa0153640:intron 50.0%
!!! TGGGTGTTTTTTTGGGAGGG+TGG - chr1_4:17207719-17207738 Msa0153640:intron 50.0%
CGTGACCGCAATTATGGTTG+CGG + chr1_4:17208228-17208247 None:intergenic 50.0%
GTACTCCCCCTGATTCACAT+TGG - chr1_4:17208347-17208366 Msa0153640:CDS 50.0%
AGCAGCCAATGTGAATCAGG+GGG + chr1_4:17208355-17208374 None:intergenic 50.0%
CAGCAGCCAATGTGAATCAG+GGG + chr1_4:17208356-17208375 None:intergenic 50.0%
GCAGCTGCAAGGAAAGTCAA+AGG - chr1_4:17208583-17208602 Msa0153640:intron 50.0%
CTCATTGTGGCTGCTATTGC+AGG - chr1_4:17208640-17208659 Msa0153640:intron 50.0%
CGAGTCACGAGAACCCAAAT+TGG + chr1_4:17208786-17208805 None:intergenic 50.0%
ACTGCAGCCACTGTATTGTC+GGG + chr1_4:17208946-17208965 None:intergenic 50.0%
AGATGCTCGAGCAGAGCATA+GGG + chr1_4:17208993-17209012 None:intergenic 50.0%
AAGATGCTCGAGCAGAGCAT+AGG + chr1_4:17208994-17209013 None:intergenic 50.0%
GCGTCTGAGAGTAGCTTAAC+AGG - chr1_4:17209237-17209256 Msa0153640:intron 50.0%
! AGTGCCGTTATGCCTCCATT+TGG - chr1_4:17209717-17209736 Msa0153640:intron 50.0%
ACGCTCTGCTAAGAAGCAAG+GGG - chr1_4:17209958-17209977 Msa0153640:intron 50.0%
TGCTTGAAGCCTTGACTGCA+AGG + chr1_4:17210708-17210727 None:intergenic 50.0%
ATCCTAGCTAGTCCTGCTAC+TGG - chr1_4:17211564-17211583 Msa0153640:intron 50.0%
GGTTCTCAAGGACGTTGTCT+AGG + chr1_4:17211722-17211741 None:intergenic 50.0%
GAGATCCATTTAAGGGGCTG+CGG - chr1_4:17212200-17212219 Msa0153640:intron 50.0%
ATCCGTTATGAAGGACTCCC+AGG - chr1_4:17212464-17212483 Msa0153640:intron 50.0%
AGCCTGGGAGTCCTTCATAA+CGG + chr1_4:17212469-17212488 None:intergenic 50.0%
GCCAATGGTTTAGCTGGAGC+TGG - chr1_4:17206522-17206541 Msa0153640:CDS 55.0%
! GGTTGGGGTGGACTCTATAG+TGG - chr1_4:17206887-17206906 Msa0153640:intron 55.0%
CGTGTCAAGTGACCCGATAG+CGG + chr1_4:17207218-17207237 None:intergenic 55.0%
TCTTTGCACACCCCAAGGTC+CGG + chr1_4:17207459-17207478 None:intergenic 55.0%
TGAGCTCTTTGCACACCCCA+AGG + chr1_4:17207464-17207483 None:intergenic 55.0%
GGGGTGTGCAAAGAGCTCAA+TGG - chr1_4:17207465-17207484 Msa0153640:intron 55.0%
CACTTACAGAGCAGAGCCTC+CGG - chr1_4:17207892-17207911 Msa0153640:intron 55.0%
AGCCTCCGGATTCGTAGGAA+CGG - chr1_4:17207906-17207925 Msa0153640:intron 55.0%
CTGTGGCTATTGCAGCTGCA+AGG - chr1_4:17208572-17208591 Msa0153640:intron 55.0%
GGACATGGAGACGGTACTGT+TGG - chr1_4:17208604-17208623 Msa0153640:intron 55.0%
GGTTCTCGTGACTCGAATGC+AGG - chr1_4:17208791-17208810 Msa0153640:intron 55.0%
CAAGGCTTCACACCCGGTAA+AGG + chr1_4:17211211-17211230 None:intergenic 55.0%
!! GACCAGTAGCAGGACTAGCT+AGG + chr1_4:17211569-17211588 None:intergenic 55.0%
ATGCTCCGCAGCCCCTTAAA+TGG + chr1_4:17212208-17212227 None:intergenic 55.0%
GGTTTAGCTGGAGCTGGTGG+TGG - chr1_4:17206528-17206547 Msa0153640:CDS 60.0%
TTCTGCTCAAGGCCGGACCT+TGG - chr1_4:17207444-17207463 Msa0153640:intron 60.0%
TCTGCTCAAGGCCGGACCTT+GGG - chr1_4:17207445-17207464 Msa0153640:intron 60.0%
AGCAGAGCCTCCGGATTCGT+AGG - chr1_4:17207901-17207920 Msa0153640:intron 60.0%
CAGGGCCGTTCCTACGAATC+CGG + chr1_4:17207914-17207933 None:intergenic 60.0%
CCTGCAGAGCTACAGCGTAG+TGG + chr1_4:17209796-17209815 None:intergenic 60.0%
! CCACTACGCTGTAGCTCTGC+AGG - chr1_4:17209793-17209812 Msa0153640:five_prime_UTR 60.0%
CTGCTCAAGGCCGGACCTTG+GGG - chr1_4:17207446-17207465 Msa0153640:intron 65.0%
GGCCGTTCCTACGAATCCGG+AGG + chr1_4:17207911-17207930 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 17206293 17212790 17206293 ID=Msa0153640;Name=Msa0153640
chr1_4 mRNA 17206293 17212790 17206293 ID=Msa0153640-mRNA-1;Parent=Msa0153640;Name=Msa0153640-mRNA-1;_AED=0.12;_eAED=0.12;_QI=994|1|1|1|0.8|0.72|11|162|126
chr1_4 exon 17206293 17206645 17206293 ID=Msa0153640-mRNA-1:exon:6563;Parent=Msa0153640-mRNA-1
chr1_4 exon 17208316 17208370 17208316 ID=Msa0153640-mRNA-1:exon:6562;Parent=Msa0153640-mRNA-1
chr1_4 exon 17208883 17209187 17208883 ID=Msa0153640-mRNA-1:exon:6561;Parent=Msa0153640-mRNA-1
chr1_4 exon 17209445 17209513 17209445 ID=Msa0153640-mRNA-1:exon:6560;Parent=Msa0153640-mRNA-1
chr1_4 exon 17209754 17209906 17209754 ID=Msa0153640-mRNA-1:exon:6559;Parent=Msa0153640-mRNA-1
chr1_4 exon 17210271 17210325 17210271 ID=Msa0153640-mRNA-1:exon:6558;Parent=Msa0153640-mRNA-1
chr1_4 exon 17210421 17210551 17210421 ID=Msa0153640-mRNA-1:exon:6557;Parent=Msa0153640-mRNA-1
chr1_4 exon 17212137 17212211 17212137 ID=Msa0153640-mRNA-1:exon:6556;Parent=Msa0153640-mRNA-1
chr1_4 exon 17212294 17212407 17212294 ID=Msa0153640-mRNA-1:exon:6555;Parent=Msa0153640-mRNA-1
chr1_4 exon 17212496 17212637 17212496 ID=Msa0153640-mRNA-1:exon:6554;Parent=Msa0153640-mRNA-1
chr1_4 exon 17212706 17212790 17212706 ID=Msa0153640-mRNA-1:exon:6553;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17212706 17212790 17212706 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17212496 17212637 17212496 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17212294 17212407 17212294 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17212137 17212211 17212137 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17210421 17210551 17210421 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17210271 17210325 17210271 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17209754 17209906 17209754 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17209445 17209513 17209445 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 five_prime_UTR 17209018 17209187 17209018 ID=Msa0153640-mRNA-1:five_prime_utr;Parent=Msa0153640-mRNA-1
chr1_4 CDS 17208883 17209017 17208883 ID=Msa0153640-mRNA-1:cds;Parent=Msa0153640-mRNA-1
chr1_4 CDS 17208316 17208370 17208316 ID=Msa0153640-mRNA-1:cds;Parent=Msa0153640-mRNA-1
chr1_4 CDS 17206455 17206645 17206455 ID=Msa0153640-mRNA-1:cds;Parent=Msa0153640-mRNA-1
chr1_4 three_prime_UTR 17206293 17206454 17206293 ID=Msa0153640-mRNA-1:three_prime_utr;Parent=Msa0153640-mRNA-1
Gene Sequence

>Msa0153640

ATGTCACTTGTCTATATATTTTTCTTGTTGTGTATATCAGTAAGAATCCTCTTGTCATTCAAAAAGGTCTTTTTGGTTGGAGCAATAGCAAAACTTGGAGCTACTGTCACAACATACCCATTGCTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAATAACTCATTAAGATACTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTATGAAGGACTCCCAGGCTTTTATAAAGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTATTATTCATGGTAAAGGAGGAGCTTGTTAAGGCTATCACAGTTATAGCAAATAAGAGCAAAAAAGTTGTATTAAATTCGAGTAGTTAA

Protein sequence

>Msa0153640

MSLVYIFFLLCISVRILLSFKKVFLVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGNNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAITVIANKSKKVVLNSSS*