AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267120 MtrunA17_Chr6g0464561 92.593 243 15 1 19 261 89 328 2.81e-163 455
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267120 AT1G76730.1 80.579 242 44 1 19 260 116 354 1.77e-138 394

Find 63 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTAGATCTTATTGTTAT+TGG 0.152589 2_2:-68474954 Msa0267120:CDS
TCCAATTGGCCGTCCATATT+TGG 0.173757 2_2:+68474992 None:intergenic
GTCAGATTTCTCACTCTTTC+AGG 0.185200 2_2:-68475950 Msa0267120:intron
ATATGGTATGTTGCGTTATA+TGG 0.257841 2_2:-68474208 Msa0267120:CDS
ACTTGTTTCTGAGGAGAATC+TGG 0.290978 2_2:+68475971 None:intergenic
GAAGTGTATGATACTTTCTT+AGG 0.307304 2_2:+68476432 None:intergenic
TCAAAAGGAAATGTTGTATA+AGG 0.317075 2_2:-68472813 Msa0267120:three_prime_UTR
ACAATAAGCAATATTTAGAT+TGG 0.317931 2_2:+68472747 None:intergenic
AATCACCAACCTTGAGGCTT+TGG 0.321636 2_2:+68473747 None:intergenic
TCTGTTGGTGTTGCCAAATA+TGG 0.323479 2_2:-68475005 Msa0267120:CDS
CCTAATCGAGCACCTGTGTT+CGG 0.335307 2_2:+68474915 None:intergenic
GGATTTGCAGAACTTGAATA+TGG 0.362270 2_2:-68474225 Msa0267120:CDS
CTTCTCTTTCTTTGAGCAGT+AGG 0.375375 2_2:+68472901 None:intergenic
TTCTCTTTCTTTGAGCAGTA+GGG 0.383805 2_2:+68472902 None:intergenic
CTAATCGAGCACCTGTGTTC+GGG 0.385036 2_2:+68474916 None:intergenic
TGCTTCAATTACTTAAGAAC+TGG 0.394527 2_2:+68472779 None:intergenic
GCCAAATATGGACGGCCAAT+TGG 0.395623 2_2:-68474993 Msa0267120:CDS
CAATAAGCAATATTTAGATT+GGG 0.424533 2_2:+68472748 None:intergenic
CAACCTTGAGGCTTTGGAAT+GGG 0.440113 2_2:+68473753 None:intergenic
AGTTTCTTCCTTCATACTGT+TGG 0.441726 2_2:-68476455 Msa0267120:CDS
CCGAACACAGGTGCTCGATT+AGG 0.445240 2_2:-68474915 Msa0267120:CDS
TGTTTAACATATACTTCAAA+AGG 0.447235 2_2:-68472828 Msa0267120:three_prime_UTR
CGAGTCAAATATGTTAACTT+CGG 0.457819 2_2:-68475051 Msa0267120:CDS
CTGGAATGTCATCCACCAAT+TGG 0.474668 2_2:+68473850 None:intergenic
GAGTCAAATATGTTAACTTC+GGG 0.482226 2_2:-68475050 Msa0267120:CDS
TGAAGTATTGACACCAGACC+AGG 0.482789 2_2:-68476387 Msa0267120:intron
TACAGTGCATGACTGCCAAT+TGG 0.497413 2_2:-68473865 Msa0267120:intron
TAAATAGATTTCATGAGCTA+AGG 0.501119 2_2:-68472714 None:intergenic
AGAAGTACAGGCTTCCTTGA+TGG 0.501762 2_2:+68475025 None:intergenic
GCTGAACACATTAGAATGAC+TGG 0.503094 2_2:+68476410 None:intergenic
GGCAACACCAACAGAAGTAC+AGG 0.513556 2_2:+68475013 None:intergenic
CCTCAACCACGGCTGAGGAC+AGG 0.514670 2_2:-68475089 Msa0267120:CDS
TTCTTAGGCCAACAGTATGA+AGG 0.517211 2_2:+68476447 None:intergenic
AGGAGGATTGAATTAGAGAC+TGG 0.525050 2_2:-68472961 Msa0267120:CDS
CTCTTTCTTTGAGCAGTAGG+GGG 0.525332 2_2:+68472904 None:intergenic
CCTGTCCTCAGCCGTGGTTG+AGG 0.530300 2_2:+68475089 None:intergenic
ACTGGAAAGAAGCTTCCTAC+TGG 0.531355 2_2:-68472943 Msa0267120:CDS
TATGGTATGTTGCGTTATAT+GGG 0.539407 2_2:-68474207 Msa0267120:CDS
CCAACCTTGAGGCTTTGGAA+TGG 0.543089 2_2:+68473752 None:intergenic
TCTCTTTCTTTGAGCAGTAG+GGG 0.543327 2_2:+68472903 None:intergenic
ACACCAACAGAAACCTGGTC+TGG 0.556563 2_2:+68476374 None:intergenic
TGATATCCACTGGTACATCA+TGG 0.558591 2_2:+68473811 None:intergenic
GTTAACTTCGGGTACCATCA+AGG 0.561193 2_2:-68475039 Msa0267120:CDS
TCAACACTAGTTGTTACCTC+AGG 0.563225 2_2:-68474171 Msa0267120:intron
CACAGGTGCTCGATTAGGAA+AGG 0.564387 2_2:-68474910 Msa0267120:CDS
AAGGAAGCCTGTACTTCTGT+TGG 0.570890 2_2:-68475020 Msa0267120:CDS
AGAAATCTGACTTGTTTCTG+AGG 0.583571 2_2:+68475962 None:intergenic
AATTTCTCTGATGGACCAGT+AGG 0.587443 2_2:+68472928 None:intergenic
TAACTCCTCAACCACGGCTG+AGG 0.589739 2_2:-68475094 Msa0267120:CDS
ACAGGTGCTCGATTAGGAAA+GGG 0.589862 2_2:-68474909 Msa0267120:CDS
TGCTCGATTAGGAAAGGGAG+AGG 0.600130 2_2:-68474904 Msa0267120:intron
GGAGTACAAATGATATCCAC+TGG 0.602644 2_2:+68473801 None:intergenic
AGTGCATGACTGCCAATTGG+TGG 0.605351 2_2:-68473862 Msa0267120:CDS
GTATACTTAGAGAGCTCAAG+AGG 0.606102 2_2:-68472981 Msa0267120:CDS
GTCGCTGTTGACCCGAACAC+AGG 0.615234 2_2:-68474927 Msa0267120:CDS
ACTGCTCAAAGAAAGAGAAG+AGG 0.621417 2_2:-68472898 Msa0267120:CDS
TACTTAGAGAGCTCAAGAGG+AGG 0.634181 2_2:-68472978 Msa0267120:CDS
ACACCCATTCCAAAGCCTCA+AGG 0.655331 2_2:-68473756 Msa0267120:intron
GTTAATCCATGATGTACCAG+TGG 0.657623 2_2:-68473817 Msa0267120:CDS
CCGCGATGCACAATGTGTGA+AGG 0.680082 2_2:-68475999 Msa0267120:CDS
TTGGTGTTGCCAAATATGGA+CGG 0.687555 2_2:-68475001 Msa0267120:CDS
CCTTCACACATTGTGCATCG+CGG 0.691529 2_2:+68475999 None:intergenic
AGTTGTTAACTCCTCAACCA+CGG 0.712250 2_2:-68475100 Msa0267120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAGAAATAAAATAAACA+AGG + chr2_2:68473363-68473382 None:intergenic 15.0%
!!! ACTCTTGATTTTTAAATTAA+TGG - chr2_2:68473602-68473621 Msa0267120:intron 15.0%
!!! ATAAGAATGAGTAATTTTTA+TGG + chr2_2:68474620-68474639 None:intergenic 15.0%
!! TTTATAATATTTAAACAAGC+AGG + chr2_2:68474787-68474806 None:intergenic 15.0%
!! TACAATATAGTTACAATAAA+AGG + chr2_2:68474867-68474886 None:intergenic 15.0%
!!! AATTAATCAAACAAGTTTTT+CGG - chr2_2:68475569-68475588 Msa0267120:intron 15.0%
!! TGCTAATAAAAATCAAATTG+CGG + chr2_2:68473387-68473406 None:intergenic 20.0%
!! TAATTTCTTAATTGTACTTG+TGG + chr2_2:68473927-68473946 None:intergenic 20.0%
!! AAAGTAGATCTTATTGTTAT+TGG - chr2_2:68474237-68474256 Msa0267120:intron 20.0%
!! GATTTATTAAACATAACCAT+AGG + chr2_2:68474341-68474360 None:intergenic 20.0%
!!! TTTTCCTTTTATTCATCAAA+AGG - chr2_2:68474369-68474388 Msa0267120:intron 20.0%
!! TAAACTAGATTATATTTCAC+TGG - chr2_2:68474402-68474421 Msa0267120:intron 20.0%
!!! TTAACAATTTTGCAAGTAAT+CGG + chr2_2:68474534-68474553 None:intergenic 20.0%
!!! TAATTTTTATGGTACTGATT+AGG + chr2_2:68474609-68474628 None:intergenic 20.0%
!! TTATTGATATTATACCACAA+TGG - chr2_2:68475293-68475312 Msa0267120:intron 20.0%
!! TATTGATATTATACCACAAT+GGG - chr2_2:68475294-68475313 Msa0267120:intron 20.0%
!! TGTATTTGTAAAAATGACTT+GGG + chr2_2:68475418-68475437 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr2_2:68475946-68475965 None:intergenic 20.0%
!!! TTTTGAAAAAAAATTCAAGC+AGG - chr2_2:68476112-68476131 Msa0267120:intron 20.0%
!!! TTTTACTACAGGAATTTATT+GGG - chr2_2:68476154-68476173 Msa0267120:intron 20.0%
!!! ATAGTAAATATGAGTTTTGA+TGG - chr2_2:68476320-68476339 Msa0267120:intron 20.0%
!! TGTTTAACATATACTTCAAA+AGG - chr2_2:68476363-68476382 Msa0267120:intron 20.0%
!! CAATAAGCAATATTTAGATT+GGG + chr2_2:68476446-68476465 None:intergenic 20.0%
!! ACAATAAGCAATATTTAGAT+TGG + chr2_2:68476447-68476466 None:intergenic 20.0%
!!! TCATCTTTTTAGTGAAAGTT+TGG - chr2_2:68473072-68473091 Msa0267120:intron 25.0%
!!! TTTTTAGTGAAAGTTTGGTA+GGG - chr2_2:68473077-68473096 Msa0267120:intron 25.0%
! AAAATAGCAGAAGAGTAAAA+GGG - chr2_2:68473420-68473439 Msa0267120:intron 25.0%
! ATGTTCTAACAATCAAATTG+TGG + chr2_2:68473463-68473482 None:intergenic 25.0%
!! GTAAGATCTTTTCAATATGA+AGG - chr2_2:68473483-68473502 Msa0267120:intron 25.0%
! AATTACAGGAATAAGAGATT+AGG - chr2_2:68473563-68473582 Msa0267120:intron 25.0%
! TTTCAAAACAAAAGTTTCCA+AGG - chr2_2:68473692-68473711 Msa0267120:intron 25.0%
! AACATTAAAAGAGAACCAAA+AGG + chr2_2:68474043-68474062 None:intergenic 25.0%
!! ATCTTTTCATCTAATCCAAT+TGG + chr2_2:68474216-68474235 None:intergenic 25.0%
!! CTATCCTTTTGATGAATAAA+AGG + chr2_2:68474376-68474395 None:intergenic 25.0%
! GTAGTATGATCATAAAATGT+AGG + chr2_2:68474673-68474692 None:intergenic 25.0%
! CTTATACCATCTTAGAATTT+GGG + chr2_2:68475128-68475147 None:intergenic 25.0%
! TCTTATACCATCTTAGAATT+TGG + chr2_2:68475129-68475148 None:intergenic 25.0%
! GTGTATTTGTAAAAATGACT+TGG + chr2_2:68475419-68475438 None:intergenic 25.0%
! TAAATTATGTCAATCCAATC+AGG + chr2_2:68475595-68475614 None:intergenic 25.0%
!!! CTTATTTCCATATGCTTTTT+AGG - chr2_2:68475700-68475719 Msa0267120:intron 25.0%
!! CTTTTACTACAGGAATTTAT+TGG - chr2_2:68476153-68476172 Msa0267120:intron 25.0%
! AAATTGTCTCCTGAAAAATT+GGG - chr2_2:68476179-68476198 Msa0267120:intron 25.0%
! TCAAAAGGAAATGTTGTATA+AGG - chr2_2:68476378-68476397 Msa0267120:intron 25.0%
GAAGTGTATGATACTTTCTT+AGG + chr2_2:68472762-68472781 None:intergenic 30.0%
! TCCTGTTATTTATGAAAGCT+AGG - chr2_2:68472938-68472957 Msa0267120:CDS 30.0%
GTTTGTTCTGTTAGGTTATT+AGG - chr2_2:68473025-68473044 Msa0267120:CDS 30.0%
CACTAAAAAGATGAATCAGA+AGG + chr2_2:68473066-68473085 None:intergenic 30.0%
!! CTTTTTAGTGAAAGTTTGGT+AGG - chr2_2:68473076-68473095 Msa0267120:intron 30.0%
!! TGTTACTTGTGATTTTGAGT+AGG - chr2_2:68473118-68473137 Msa0267120:intron 30.0%
TAGGAATTAATTGATGTGTG+TGG - chr2_2:68473137-68473156 Msa0267120:intron 30.0%
GGTTAGATAGGTACTTTATT+CGG - chr2_2:68473262-68473281 Msa0267120:intron 30.0%
ACAAGGAAACTATCATGAAA+AGG + chr2_2:68473346-68473365 None:intergenic 30.0%
GAAAATAGCAGAAGAGTAAA+AGG - chr2_2:68473419-68473438 Msa0267120:intron 30.0%
!!! TTTGTTTTGAAACACTCTTC+TGG + chr2_2:68473684-68473703 None:intergenic 30.0%
!!! ATGTTTGGAATTGTTTTTGG+AGG + chr2_2:68473780-68473799 None:intergenic 30.0%
!! AGCATGTTTGGAATTGTTTT+TGG + chr2_2:68473783-68473802 None:intergenic 30.0%
TGAACAACTTATAGCATGTT+TGG + chr2_2:68473795-68473814 None:intergenic 30.0%
!! ATAGATGCGTTTTAGACTTA+TGG - chr2_2:68473869-68473888 Msa0267120:intron 30.0%
TTTAGACTTATGGTGATTGT+TGG - chr2_2:68473879-68473898 Msa0267120:intron 30.0%
! ACTTGCAGTATTTTTCCTTT+TGG - chr2_2:68474025-68474044 Msa0267120:intron 30.0%
ACTATCAATATTTGTGCAGA+TGG - chr2_2:68474063-68474082 Msa0267120:intron 30.0%
CGAGTCAAATATGTTAACTT+CGG - chr2_2:68474140-68474159 Msa0267120:intron 30.0%
GAGTCAAATATGTTAACTTC+GGG - chr2_2:68474141-68474160 Msa0267120:intron 30.0%
CCATAGGAAATGAATGTAAA+AGG + chr2_2:68474325-68474344 None:intergenic 30.0%
! CCTTTTACATTCATTTCCTA+TGG - chr2_2:68474322-68474341 Msa0267120:intron 30.0%
CTTAACAACACTATTGACAT+AGG + chr2_2:68474431-68474450 None:intergenic 30.0%
AATTGTTAAGATTGCGAGAT+TGG - chr2_2:68474545-68474564 Msa0267120:intron 30.0%
!! TAGGTTAAAAGACTGGTTTA+AGG + chr2_2:68474590-68474609 None:intergenic 30.0%
! TACTGATTAGGTTAAAAGAC+TGG + chr2_2:68474597-68474616 None:intergenic 30.0%
TTACTCATTCTTATCAAGAC+CGG - chr2_2:68474626-68474645 Msa0267120:intron 30.0%
TCAAGATCAAAATCCTACTT+AGG + chr2_2:68474712-68474731 None:intergenic 30.0%
TAACAGTCTAACAGATCAAA+AGG + chr2_2:68474918-68474937 None:intergenic 30.0%
! ACTGTTACTTCAATTAAGAG+AGG - chr2_2:68474931-68474950 Msa0267120:CDS 30.0%
ATATGGTATGTTGCGTTATA+TGG - chr2_2:68474983-68475002 Msa0267120:CDS 30.0%
TATGGTATGTTGCGTTATAT+GGG - chr2_2:68474984-68475003 Msa0267120:CDS 30.0%
! CGGTAGATATCAAAACATTT+TGG + chr2_2:68475201-68475220 None:intergenic 30.0%
ATGAACCAAAACAGGATTAA+AGG + chr2_2:68475228-68475247 None:intergenic 30.0%
AATCAAACATGAACCAAAAC+AGG + chr2_2:68475236-68475255 None:intergenic 30.0%
! TTTGTAAAAATGACTTGGGT+TGG + chr2_2:68475414-68475433 None:intergenic 30.0%
AAAAAAAATCACCAACCTTG+AGG + chr2_2:68475453-68475472 None:intergenic 30.0%
GCAAAATGAAAATGCTAAGT+TGG + chr2_2:68475480-68475499 None:intergenic 30.0%
! AGACAAGTCATAAGTTTTCT+CGG + chr2_2:68475665-68475684 None:intergenic 30.0%
! AAGCTATCCTAAAAAGCATA+TGG + chr2_2:68475710-68475729 None:intergenic 30.0%
CAAAACTAAAAGGTCAAGTT+TGG + chr2_2:68475858-68475877 None:intergenic 30.0%
!!! CTTGACCTTTTAGTTTTGTT+CGG - chr2_2:68475860-68475879 Msa0267120:intron 30.0%
! CAACTTACTTCTTTTACTAC+AGG - chr2_2:68476143-68476162 Msa0267120:intron 30.0%
CAAATTGTCTCCTGAAAAAT+TGG - chr2_2:68476178-68476197 Msa0267120:intron 30.0%
TGCTTCAATTACTTAAGAAC+TGG + chr2_2:68476415-68476434 None:intergenic 30.0%
AGTTTCTTCCTTCATACTGT+TGG - chr2_2:68472736-68472755 Msa0267120:three_prime_UTR 35.0%
ATAAAACACCAACAGAAACC+TGG + chr2_2:68472825-68472844 None:intergenic 35.0%
CACTGCAAATGTTCTAATCA+CGG + chr2_2:68472908-68472927 None:intergenic 35.0%
! GCCTAGCTTTCATAAATAAC+AGG + chr2_2:68472942-68472961 None:intergenic 35.0%
TTGTCACTGTTTGTTCTGTT+AGG - chr2_2:68473017-68473036 Msa0267120:CDS 35.0%
TGAATCAGAAGGAAGCTTAT+AGG + chr2_2:68473055-68473074 None:intergenic 35.0%
! TGTGGATTTTTATGCAGATG+AGG - chr2_2:68473155-68473174 Msa0267120:intron 35.0%
! GTGGATTTTTATGCAGATGA+GGG - chr2_2:68473156-68473175 Msa0267120:intron 35.0%
!! AGAAATCTGACTTGTTTCTG+AGG + chr2_2:68473232-68473251 None:intergenic 35.0%
CTTTATTCGGAGTTTGTGTA+TGG - chr2_2:68473275-68473294 Msa0267120:intron 35.0%
! TTTGTGTATGGTGTTGAGTA+CGG - chr2_2:68473287-68473306 Msa0267120:intron 35.0%
!! GAAGGTATCTATGACTATGA+TGG - chr2_2:68473501-68473520 Msa0267120:intron 35.0%
CAGCAACAAAGAAGAATTAC+AGG - chr2_2:68473549-68473568 Msa0267120:intron 35.0%
AGAGATTAGGATCCTCTAAA+TGG - chr2_2:68473576-68473595 Msa0267120:intron 35.0%
ATCAAGAGTAGACCATTTAG+AGG + chr2_2:68473591-68473610 None:intergenic 35.0%
ATGTGAATTGCTCACTTTAG+AGG - chr2_2:68473650-68473669 Msa0267120:intron 35.0%
TGGTCTATGTTACATAAAGC+AGG + chr2_2:68473907-68473926 None:intergenic 35.0%
ATAACTCTCATTTCAGCAGT+TGG + chr2_2:68473992-68474011 None:intergenic 35.0%
! TTTTATGAACTTACAGCCAC+AGG - chr2_2:68474480-68474499 Msa0267120:intron 35.0%
TTTATGAACTTACAGCCACA+GGG - chr2_2:68474481-68474500 Msa0267120:intron 35.0%
!! CGTAAAAGCATTGTAAGATC+CGG + chr2_2:68474648-68474667 None:intergenic 35.0%
AAATCCTACTTAGGATCATG+AGG + chr2_2:68474703-68474722 None:intergenic 35.0%
GCTTGTGCGATATTAGATAA+CGG + chr2_2:68474818-68474837 None:intergenic 35.0%
CCTTGAAACAATACTCTTGT+CGG + chr2_2:68474844-68474863 None:intergenic 35.0%
GGATTTGCAGAACTTGAATA+TGG - chr2_2:68474966-68474985 Msa0267120:CDS 35.0%
GCAAGAACAAAAATTACCTG+AGG + chr2_2:68475039-68475058 None:intergenic 35.0%
TACCATCTTAGAATTTGGGT+CGG + chr2_2:68475124-68475143 None:intergenic 35.0%
AGCGAAATCTCTTCTATACA+AGG - chr2_2:68475162-68475181 Msa0267120:intron 35.0%
AAAACAGGATTAAAGGACAG+CGG + chr2_2:68475221-68475240 None:intergenic 35.0%
CCATACCGAACAAAACTAAA+AGG + chr2_2:68475868-68475887 None:intergenic 35.0%
!!! CCTTTTAGTTTTGTTCGGTA+TGG - chr2_2:68475865-68475884 Msa0267120:intron 35.0%
! CGAATTTGTCCCAATTTTTC+AGG + chr2_2:68476191-68476210 None:intergenic 35.0%
TTCTCTTTCTTTGAGCAGTA+GGG + chr2_2:68476292-68476311 None:intergenic 35.0%
TTCTTAGGCCAACAGTATGA+AGG + chr2_2:68472747-68472766 None:intergenic 40.0%
GCTGAACACATTAGAATGAC+TGG + chr2_2:68472784-68472803 None:intergenic 40.0%
! ACGGATTACGCTTAACAATC+TGG + chr2_2:68472889-68472908 None:intergenic 40.0%
CGTGATTAGAACATTTGCAG+TGG - chr2_2:68472906-68472925 Msa0267120:CDS 40.0%
!! ACTTGTTTCTGAGGAGAATC+TGG + chr2_2:68473223-68473242 None:intergenic 40.0%
GTCAGATTTCTCACTCTTTC+AGG - chr2_2:68473241-68473260 Msa0267120:intron 40.0%
!! CTCACTCTTTCAGGTTAGAT+AGG - chr2_2:68473250-68473269 Msa0267120:intron 40.0%
TTGAAACACTCTTCTGGATC+CGG + chr2_2:68473678-68473697 None:intergenic 40.0%
AGTTGTTAACTCCTCAACCA+CGG - chr2_2:68474091-68474110 Msa0267120:intron 40.0%
!! TCTGTTGGTGTTGCCAAATA+TGG - chr2_2:68474186-68474205 Msa0267120:CDS 40.0%
!! TTGGTGTTGCCAAATATGGA+CGG - chr2_2:68474190-68474209 Msa0267120:CDS 40.0%
TACTTAGGATCATGAGGAAG+GGG + chr2_2:68474697-68474716 None:intergenic 40.0%
CTACTTAGGATCATGAGGAA+GGG + chr2_2:68474698-68474717 None:intergenic 40.0%
!! CCGACAAGAGTATTGTTTCA+AGG - chr2_2:68474841-68474860 Msa0267120:intron 40.0%
TTAAGAGAGGACTAAAGTGC+AGG - chr2_2:68474944-68474963 Msa0267120:CDS 40.0%
TAAGAGAGGACTAAAGTGCA+GGG - chr2_2:68474945-68474964 Msa0267120:CDS 40.0%
TCAACACTAGTTGTTACCTC+AGG - chr2_2:68475020-68475039 Msa0267120:CDS 40.0%
! GCTGTCCTTTAATCCTGTTT+TGG - chr2_2:68475220-68475239 Msa0267120:intron 40.0%
TGTAAGAGAAGTTCCCATTG+TGG + chr2_2:68475310-68475329 None:intergenic 40.0%
! TGGATTAACAGCTTTTCGAC+TGG + chr2_2:68475363-68475382 None:intergenic 40.0%
GTTAATCCATGATGTACCAG+TGG - chr2_2:68475374-68475393 Msa0267120:intron 40.0%
TGATATCCACTGGTACATCA+TGG + chr2_2:68475383-68475402 None:intergenic 40.0%
GGAGTACAAATGATATCCAC+TGG + chr2_2:68475393-68475412 None:intergenic 40.0%
TTATAGTGCCTTCCTTCTAC+TGG - chr2_2:68475500-68475519 Msa0267120:intron 40.0%
CAATCAAAGAAGCCAGTAGA+AGG + chr2_2:68475515-68475534 None:intergenic 40.0%
!! AACAAGTTTTTCGGCCTGAT+TGG - chr2_2:68475578-68475597 Msa0267120:intron 40.0%
CTCTCAAACAGTCTTACAAG+TGG + chr2_2:68475636-68475655 None:intergenic 40.0%
! TTTTGTTCGGTATGGCTCAT+AGG - chr2_2:68475873-68475892 Msa0267120:intron 40.0%
TCTTTAGATTAGGCATGTCC+CGG + chr2_2:68476020-68476039 None:intergenic 40.0%
GGACATGCCTAATCTAAAGA+GGG - chr2_2:68476020-68476039 Msa0267120:CDS 40.0%
GTATACTTAGAGAGCTCAAG+AGG - chr2_2:68476210-68476229 Msa0267120:intron 40.0%
AGGAGGATTGAATTAGAGAC+TGG - chr2_2:68476230-68476249 Msa0267120:intron 40.0%
! AATTTCTCTGATGGACCAGT+AGG + chr2_2:68476266-68476285 None:intergenic 40.0%
TCTCTTTCTTTGAGCAGTAG+GGG + chr2_2:68476291-68476310 None:intergenic 40.0%
CTTCTCTTTCTTTGAGCAGT+AGG + chr2_2:68476293-68476312 None:intergenic 40.0%
ACTGCTCAAAGAAAGAGAAG+AGG - chr2_2:68476293-68476312 Msa0267120:intron 40.0%
!! TGAAGTATTGACACCAGACC+AGG - chr2_2:68472804-68472823 Msa0267120:three_prime_UTR 45.0%
ACGCTTAACAATCTGGACTC+TGG + chr2_2:68472882-68472901 None:intergenic 45.0%
AGTGAAAGTTTGGTAGGGCA+TGG - chr2_2:68473082-68473101 Msa0267120:intron 45.0%
AAGTTTGGTAGGGCATGGAA+TGG - chr2_2:68473087-68473106 Msa0267120:intron 45.0%
AGTTTGGTAGGGCATGGAAT+GGG - chr2_2:68473088-68473107 Msa0267120:intron 45.0%
! TGTATGGTGTTGAGTACGGA+GGG - chr2_2:68473291-68473310 Msa0267120:intron 45.0%
! ATTGCTCACTTTAGAGGAGC+CGG - chr2_2:68473656-68473675 Msa0267120:intron 45.0%
CTAGAGGACTCTTCATGTTG+AGG + chr2_2:68473742-68473761 None:intergenic 45.0%
TTTGGAGGATGCTGAACGTT+TGG + chr2_2:68473765-68473784 None:intergenic 45.0%
GTTAACTTCGGGTACCATCA+AGG - chr2_2:68474152-68474171 Msa0267120:intron 45.0%
! AGAAGTACAGGCTTCCTTGA+TGG + chr2_2:68474169-68474188 None:intergenic 45.0%
AAGGAAGCCTGTACTTCTGT+TGG - chr2_2:68474171-68474190 Msa0267120:intron 45.0%
TCCAATTGGCCGTCCATATT+TGG + chr2_2:68474202-68474221 None:intergenic 45.0%
ACAGGTGCTCGATTAGGAAA+GGG - chr2_2:68474282-68474301 Msa0267120:intron 45.0%
ACTTAGGATCATGAGGAAGG+GGG + chr2_2:68474696-68474715 None:intergenic 45.0%
CCTACTTAGGATCATGAGGA+AGG + chr2_2:68474699-68474718 None:intergenic 45.0%
CCTTCCTCATGATCCTAAGT+AGG - chr2_2:68474696-68474715 Msa0267120:intron 45.0%
TCTAACCAGGATCAGAGACA+AGG + chr2_2:68474738-68474757 None:intergenic 45.0%
CTGGTTAGAAAAGTCTGCCT+CGG - chr2_2:68474749-68474768 Msa0267120:intron 45.0%
!! TGTTGTTTCCAGAAACCGAC+TGG - chr2_2:68475097-68475116 Msa0267120:CDS 45.0%
! GTCCGACCCAAATTCTAAGA+TGG - chr2_2:68475119-68475138 Msa0267120:intron 45.0%
TACAGTGCATGACTGCCAAT+TGG - chr2_2:68475326-68475345 Msa0267120:intron 45.0%
CTGGAATGTCATCCACCAAT+TGG + chr2_2:68475344-68475363 None:intergenic 45.0%
!! CAACCTTGAGGCTTTGGAAT+GGG + chr2_2:68475441-68475460 None:intergenic 45.0%
AATCACCAACCTTGAGGCTT+TGG + chr2_2:68475447-68475466 None:intergenic 45.0%
CAAAGAAGCCAGTAGAAGGA+AGG + chr2_2:68475511-68475530 None:intergenic 45.0%
GGGACATGCCTAATCTAAAG+AGG - chr2_2:68476019-68476038 Msa0267120:CDS 45.0%
GCACAGACCCTCTTTAGATT+AGG + chr2_2:68476030-68476049 None:intergenic 45.0%
TACTTAGAGAGCTCAAGAGG+AGG - chr2_2:68476213-68476232 Msa0267120:intron 45.0%
ACTGGAAAGAAGCTTCCTAC+TGG - chr2_2:68476248-68476267 Msa0267120:intron 45.0%
GTAGGGGGTAATTTCTCTGA+TGG + chr2_2:68476275-68476294 None:intergenic 45.0%
CTCTTTCTTTGAGCAGTAGG+GGG + chr2_2:68476290-68476309 None:intergenic 45.0%
ACACCAGACCAGGTTTCTGT+TGG - chr2_2:68472814-68472833 Msa0267120:three_prime_UTR 50.0%
ACACCAACAGAAACCTGGTC+TGG + chr2_2:68472820-68472839 None:intergenic 50.0%
CCTTCACACATTGTGCATCG+CGG + chr2_2:68473195-68473214 None:intergenic 50.0%
! GTGTATGGTGTTGAGTACGG+AGG - chr2_2:68473290-68473309 Msa0267120:intron 50.0%
! GTATGGTGTTGAGTACGGAG+GGG - chr2_2:68473292-68473311 Msa0267120:intron 50.0%
! TATGGTGTTGAGTACGGAGG+GGG - chr2_2:68473293-68473312 Msa0267120:intron 50.0%
GATGCTGAACGTTTGGCTAG+AGG + chr2_2:68473758-68473777 None:intergenic 50.0%
AAAAAACCTGTCCTCAGCCG+TGG + chr2_2:68474111-68474130 None:intergenic 50.0%
! GGCAACACCAACAGAAGTAC+AGG + chr2_2:68474181-68474200 None:intergenic 50.0%
GCCAAATATGGACGGCCAAT+TGG - chr2_2:68474198-68474217 Msa0267120:CDS 50.0%
CTAATCGAGCACCTGTGTTC+GGG + chr2_2:68474278-68474297 None:intergenic 50.0%
CCTAATCGAGCACCTGTGTT+CGG + chr2_2:68474279-68474298 None:intergenic 50.0%
CACAGGTGCTCGATTAGGAA+AGG - chr2_2:68474281-68474300 Msa0267120:intron 50.0%
TGCTCGATTAGGAAAGGGAG+AGG - chr2_2:68474287-68474306 Msa0267120:intron 50.0%
ATGAACTTACAGCCACAGGG+TGG - chr2_2:68474484-68474503 Msa0267120:intron 50.0%
TGAACTTACAGCCACAGGGT+GGG - chr2_2:68474485-68474504 Msa0267120:intron 50.0%
CTTAGGATCATGAGGAAGGG+GGG + chr2_2:68474695-68474714 None:intergenic 50.0%
GACAACCTTGTCTCTGATCC+TGG - chr2_2:68474730-68474749 Msa0267120:intron 50.0%
! CGAGGCAGACTTTTCTAACC+AGG + chr2_2:68474751-68474770 None:intergenic 50.0%
AGAATTTGGGTCGGACCAGT+CGG + chr2_2:68475115-68475134 None:intergenic 50.0%
AGTGCATGACTGCCAATTGG+TGG - chr2_2:68475329-68475348 Msa0267120:intron 50.0%
ACACCCATTCCAAAGCCTCA+AGG - chr2_2:68475435-68475454 Msa0267120:intron 50.0%
!! CCAACCTTGAGGCTTTGGAA+TGG + chr2_2:68475442-68475461 None:intergenic 50.0%
CCATTCCAAAGCCTCAAGGT+TGG - chr2_2:68475439-68475458 Msa0267120:intron 50.0%
!! GCTCATAGGCACTGACAAGT+GGG - chr2_2:68475887-68475906 Msa0267120:intron 50.0%
CCGCGATGCACAATGTGTGA+AGG - chr2_2:68473192-68473211 Msa0267120:intron 55.0%
CTCAGCTTCAGCTGTCACCT+TGG + chr2_2:68473712-68473731 None:intergenic 55.0%
CAAGGTGACAGCTGAAGCTG+AGG - chr2_2:68473710-68473729 Msa0267120:intron 55.0%
TAACTCCTCAACCACGGCTG+AGG - chr2_2:68474097-68474116 Msa0267120:intron 55.0%
CCGAACACAGGTGCTCGATT+AGG - chr2_2:68474276-68474295 Msa0267120:intron 55.0%
GAACTTACAGCCACAGGGTG+GGG - chr2_2:68474486-68474505 Msa0267120:intron 55.0%
!! GGCTCATAGGCACTGACAAG+TGG - chr2_2:68475886-68475905 Msa0267120:intron 55.0%
!! ATAGGCACTGACAAGTGGGC+AGG - chr2_2:68475891-68475910 Msa0267120:intron 55.0%
!! TAGGCACTGACAAGTGGGCA+GGG - chr2_2:68475892-68475911 Msa0267120:intron 55.0%
ACACGACAAGTGTCCGACAC+CGG - chr2_2:68475998-68476017 Msa0267120:CDS 55.0%
GATTAGGCATGTCCCGGTGT+CGG + chr2_2:68476014-68476033 None:intergenic 55.0%
GTGTTGAGTACGGAGGGGGA+AGG - chr2_2:68473297-68473316 Msa0267120:intron 60.0%
TGAGTACGGAGGGGGAAGGT+TGG - chr2_2:68473301-68473320 Msa0267120:intron 60.0%
GTCGCTGTTGACCCGAACAC+AGG - chr2_2:68474264-68474283 Msa0267120:intron 60.0%
AGTTAGATCGCCCCACCCTG+TGG + chr2_2:68474499-68474518 None:intergenic 60.0%
CACTGACAAGTGGGCAGGGT+TGG - chr2_2:68475896-68475915 Msa0267120:intron 60.0%
CACGACAAGTGTCCGACACC+GGG - chr2_2:68475999-68476018 Msa0267120:CDS 60.0%
CCTGTCCTCAGCCGTGGTTG+AGG + chr2_2:68474105-68474124 None:intergenic 65.0%
CCTCAACCACGGCTGAGGAC+AGG - chr2_2:68474102-68474121 Msa0267120:intron 65.0%
GCAGGTGAAACAGCGTGCCG+AGG + chr2_2:68474769-68474788 None:intergenic 65.0%
! GGGTCGGACCAGTCGGTTTC+TGG + chr2_2:68475108-68475127 None:intergenic 65.0%
GTGGGCAGGGTTGGAGACGT+AGG - chr2_2:68475905-68475924 Msa0267120:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 68472715 68476498 68472715 ID=Msa0267120;Name=Msa0267120
chr2_2 mRNA 68472715 68476498 68472715 ID=Msa0267120-mRNA-1;Parent=Msa0267120;Name=Msa0267120-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.8|0.83|0.83|1|1|6|179|261
chr2_2 exon 68472715 68473048 68472715 ID=Msa0267120-mRNA-1:exon:21770;Parent=Msa0267120-mRNA-1
chr2_2 exon 68473757 68473882 68473757 ID=Msa0267120-mRNA-1:exon:21769;Parent=Msa0267120-mRNA-1
chr2_2 exon 68474172 68474247 68474172 ID=Msa0267120-mRNA-1:exon:21768;Parent=Msa0267120-mRNA-1
chr2_2 exon 68474905 68475131 68474905 ID=Msa0267120-mRNA-1:exon:21767;Parent=Msa0267120-mRNA-1
chr2_2 exon 68475951 68476041 68475951 ID=Msa0267120-mRNA-1:exon:21766;Parent=Msa0267120-mRNA-1
chr2_2 exon 68476388 68476498 68476388 ID=Msa0267120-mRNA-1:exon:21765;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68476388 68476498 68476388 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68475951 68476041 68475951 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68474905 68475131 68474905 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68474172 68474247 68474172 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68473757 68473882 68473757 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 CDS 68472894 68473048 68472894 ID=Msa0267120-mRNA-1:cds;Parent=Msa0267120-mRNA-1
chr2_2 three_prime_UTR 68472715 68472893 68472715 ID=Msa0267120-mRNA-1:three_prime_utr;Parent=Msa0267120-mRNA-1
Gene Sequence

>Msa0267120

ATGATTTCAGATTTATCATCAAGTTTCTTCCTTCATACTGTTGGCCTAAGAAAGTATCATACACTTCCAGTCATTCTAATGTGTTCAGCTGAAGTATTGACACCAGACCAGATGAGGGCGCTAGATGTGTTCCGCGATGCACAATGTGTGAAGGTTAATCCAGATTCTCCTCAGAAACAAGTCAGATTTCTCACTCTTTCAGATGGAAAGAAGTTGTTAACTCCTCAACCACGGCTGAGGACAGGTTTTTTCTCTGTAATCGAGTCAAATATGTTAACTTCGGGTACCATCAAGGAAGCCTGTACTTCTGTTGGTGTTGCCAAATATGGACGGCCAATTGGATTAGATGAAAAGATAAAAGTAGATCTTATTGTTATTGGATCTGTCGCTGTTGACCCGAACACAGGTGCTCGATTAGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGTTGCGTTATATGGGAGCTATCGATGATTCAACACTAGTTGTTACCTCAGTGCATGACTGCCAATTGGTGGATGACATTCCAGTCGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACTCCAACCCAAGTCATTTTTACAAATACACCCATTCCAAAGCCTCAAGGAATTTATTGGGACAAATTGTCTCCTGAAAAATTGGGACAAATTCGTATACTTAGAGAGCTCAAGAGGAGGATTGAATTAGAGACTGGAAAGAAGCTTCCTACTGGTCCATCAGAGAAATTACCCCCTACTGCTCAAAGAAAGAGAAGAGGTTAA

Protein sequence

>Msa0267120

MISDLSSSFFLHTVGLRKYHTLPVILMCSAEVLTPDQMRALDVFRDAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVIESNMLTSGTIKEACTSVGVAKYGRPIGLDEKIKVDLIVIGSVAVDPNTGARLGKGEGFAELEYGMLRYMGAIDDSTLVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTPIPKPQGIYWDKLSPEKLGQIRILRELKRRIELETGKKLPTGPSEKLPPTAQRKRRG*