AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512310 MtrunA17_Chr3g0120751 93.064 519 14 1 1 519 1 497 0.0 987
Msa0512310 MtrunA17_Chr6g0459101 27.217 327 203 10 65 376 65 371 1.40e-22 100
Msa0512310 MtrunA17_Chr4g0042701 25.621 523 316 21 1 500 1 473 6.40e-22 99.0
Msa0512310 MtrunA17_Chr4g0072481 21.667 300 205 7 60 355 139 412 3.18e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512310 AT3G07670.1 69.305 518 122 5 17 519 9 504 0.0 709
Msa0512310 AT3G07670.2 74.485 388 77 1 132 519 1 366 0.0 582
Msa0512310 AT5G14260.4 27.190 331 206 9 65 380 78 388 1.56e-25 109
Msa0512310 AT5G14260.2 27.545 334 201 9 65 380 78 388 3.56e-25 109
Msa0512310 AT5G14260.3 27.545 334 201 9 65 380 78 388 3.56e-25 109
Msa0512310 AT5G14260.1 27.545 334 201 9 65 380 78 388 3.56e-25 109
Msa0512310 AT3G55080.1 29.066 289 171 8 81 368 59 314 2.57e-22 100
Msa0512310 AT1G14030.1 25.785 446 274 20 65 496 47 449 2.14e-20 94.7
Msa0512310 AT3G55080.3 28.244 262 155 7 108 368 1 230 1.18e-19 91.3
Msa0512310 AT3G55080.5 28.244 262 155 7 108 368 1 230 1.18e-19 91.3
Msa0512310 AT3G55080.4 27.193 228 136 6 142 368 1 199 2.61e-16 80.9
Msa0512310 AT2G18850.2 24.315 292 188 10 65 351 148 411 1.44e-15 79.7
Msa0512310 AT2G18850.1 24.315 292 188 10 65 351 148 411 1.55e-15 79.7
Msa0512310 AT3G55080.2 27.039 233 135 7 142 368 1 204 3.12e-15 77.8

Find 129 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATACTCACTTCTTTAT+TGG 0.118450 3_4:-62063655 Msa0512310:CDS
AGTTCATCACTTCATGTTAT+TGG 0.159601 3_4:-62060465 Msa0512310:three_prime_UTR
AGGGAAGAAATCAGGGTATT+TGG 0.193374 3_4:+62062223 None:intergenic
GAAAGGACTAATAATGTTAT+TGG 0.198637 3_4:-62062378 Msa0512310:CDS
AAAGGCTTGAAAATCTTTAA+TGG 0.210155 3_4:-62060587 Msa0512310:CDS
TGGTTGGCCATTGGAGTTAA+TGG 0.222279 3_4:-62061217 Msa0512310:CDS
TGAAAATCTTTAATGGGTTC+TGG 0.228182 3_4:-62060580 Msa0512310:CDS
GTCTTCTGTTGAGTTGTTTC+GGG 0.232871 3_4:+62060806 None:intergenic
TTAGAACTGTTGAAGAAATA+TGG 0.237492 3_4:-62061357 Msa0512310:CDS
CAGTTCTAACTTCTCCTTAT+AGG 0.242836 3_4:+62061371 None:intergenic
TTGAAGAAATATGGATTATC+AGG 0.251255 3_4:-62061348 Msa0512310:CDS
AATGCTTGCTCCTCTATTTC+AGG 0.265403 3_4:+62061016 None:intergenic
AATCTAGCTAAGCTATAGTA+TGG 0.268709 3_4:-62064792 Msa0512310:five_prime_UTR
TGTGATGTAATTACCTCTTC+AGG 0.272230 3_4:+62062203 None:intergenic
TGACACTAGCTTCACTTATA+AGG 0.272407 3_4:+62063723 None:intergenic
TTCAATACTTCACCAGCTTC+CGG 0.274096 3_4:+62063785 None:intergenic
AAATAAAACTACCTCGAAAA+AGG 0.280033 3_4:-62061050 Msa0512310:CDS
TTGTTGCTTTGAAGAATATT+AGG 0.281922 3_4:-62064434 Msa0512310:CDS
CTTGGATTCGTGCCCTCCTT+TGG 0.311412 3_4:+62061438 None:intergenic
ACAACCATGGTTGAAGCTTC+AGG 0.313304 3_4:-62064717 Msa0512310:CDS
AGTCTTCTGTTGAGTTGTTT+CGG 0.314214 3_4:+62060805 None:intergenic
ACACAGGTGTTTATTTCATA+TGG 0.317932 3_4:-62061504 Msa0512310:intron
ACTTGGAAGCTTCACAGATT+AGG 0.329419 3_4:-62062413 Msa0512310:CDS
ACCTCTTCAGGGAAGAAATC+AGG 0.336812 3_4:+62062215 None:intergenic
ATGAGGACTGGTGAATTAAA+AGG 0.337001 3_4:-62060605 Msa0512310:CDS
AAGGAAGAGTTTACAGAATC+AGG 0.341934 3_4:+62064366 None:intergenic
CTTGGAAGCTTCACAGATTA+GGG 0.342197 3_4:-62062412 Msa0512310:CDS
GTAGGTTCGATTGCCCTCTA+TGG 0.342737 3_4:-62061910 Msa0512310:intron
CTCTGCAACCTCATCATTGA+TGG 0.347009 3_4:-62064586 Msa0512310:CDS
AAGGCTTGAAAATCTTTAAT+GGG 0.349585 3_4:-62060586 Msa0512310:CDS
CAGATGGTTCAGTTATATAT+CGG 0.353139 3_4:-62063690 Msa0512310:CDS
TACCTGCTCACCTGGTTGAT+AGG 0.356905 3_4:+62061693 None:intergenic
GAAAGAATGCATTGGTTCCT+TGG 0.361542 3_4:-62061884 Msa0512310:CDS
ATTCATCTTCTCTTGAGAAA+TGG 0.363962 3_4:-62064524 Msa0512310:CDS
AAAATACAACAAGTTCTTAC+AGG 0.366598 3_4:-62060957 Msa0512310:intron
GGCCAACCAGTAATCCTTAT+AGG 0.372376 3_4:+62061231 None:intergenic
GGTAAGTGGATCGCTAGATT+TGG 0.375776 3_4:-62060839 Msa0512310:CDS
TACCAATAAAGAAGTGAGTA+TGG 0.379867 3_4:+62063653 None:intergenic
GTTGCAAGCAATGGCCAATC+TGG 0.384726 3_4:+62063749 None:intergenic
TCAATACTTCACCAGCTTCC+GGG 0.387137 3_4:+62063786 None:intergenic
GAAATCCGATGAGTCCTATA+AGG 0.391559 3_4:-62061385 Msa0512310:CDS
ATTGATGGAAACTATTCCTT+GGG 0.394039 3_4:-62064571 Msa0512310:CDS
TCAGGAGTGATGACAAGTTC+AGG 0.394221 3_4:+62064384 None:intergenic
ATTCACAAAACAACACATCT+TGG 0.404622 3_4:-62064642 Msa0512310:CDS
GGGGAGCTTCTGTTATCATA+TGG 0.410226 3_4:-62061468 Msa0512310:CDS
AAAATAATGAATGGCCTCAT+TGG 0.414490 3_4:+62060549 None:intergenic
TGAATTGTTTGGTTAAAAGT+AGG 0.419376 3_4:+62064660 None:intergenic
CATTGATGGAAACTATTCCT+TGG 0.421613 3_4:-62064572 Msa0512310:CDS
AAAAGAATTCAGTTCCAGAT+TGG 0.424118 3_4:-62063763 Msa0512310:CDS
TCTCCAGATACAATGATATG+AGG 0.424444 3_4:-62062259 Msa0512310:intron
GTGTTTATATTGGGAAGAAT+TGG 0.446814 3_4:-62063594 Msa0512310:CDS
GAGAAATGGTTGTCTCAGTC+TGG 0.449719 3_4:-62064510 Msa0512310:CDS
AAAGAATGCATTGGTTCCTT+GGG 0.460470 3_4:-62061883 Msa0512310:CDS
ACCAACATCAACTTTATCAA+TGG 0.460731 3_4:+62064467 None:intergenic
AATGAAAACAAGAAAAGAAA+AGG 0.460861 3_4:-62060373 Msa0512310:three_prime_UTR
TTTGATTTCAGCAGCAGATA+AGG 0.469294 3_4:-62064768 Msa0512310:five_prime_UTR
CAACCATGGTTGAAGCTTCA+GGG 0.470871 3_4:-62064716 Msa0512310:CDS
GAGTGGAGCTGCCCGGAAGC+TGG 0.475490 3_4:-62063797 Msa0512310:CDS
AAGGATTACTGGTTGGCCAT+TGG 0.479274 3_4:-62061226 Msa0512310:CDS
AGCAGAACTAGATCGCTACT+TGG 0.487105 3_4:-62062430 Msa0512310:CDS
TCCCTATCAACCAGGTGAGC+AGG 0.488328 3_4:-62061695 Msa0512310:intron
CTTGAGATATCCTGAAATAG+AGG 0.493097 3_4:-62061026 Msa0512310:CDS
ACTTTGAGTTTGAGAAGTTG+TGG 0.493492 3_4:+62064821 None:intergenic
CTTTGAGTTTGAGAAGTTGT+GGG 0.494344 3_4:+62064822 None:intergenic
GATTATGATAAATCGTCAAA+GGG 0.494942 3_4:-62061739 Msa0512310:CDS
GAGTCCTTCAAATGGTCATT+CGG 0.496702 3_4:-62062097 Msa0512310:CDS
TTCCTATAAGGATTACTGGT+TGG 0.499844 3_4:-62061233 Msa0512310:CDS
CCCTGATTTCTTCCCTGAAG+AGG 0.501319 3_4:-62062216 Msa0512310:intron
ACCTGCTCACCTGGTTGATA+GGG 0.506098 3_4:+62061694 None:intergenic
GGATTATGATAAATCGTCAA+AGG 0.508301 3_4:-62061740 Msa0512310:CDS
CGATATATAACTGAACCATC+TGG 0.510053 3_4:+62063691 None:intergenic
TGCATTCTTTCCATCCATAG+AGG 0.513905 3_4:+62061896 None:intergenic
GTGATGTAATTACCTCTTCA+GGG 0.518826 3_4:+62062204 None:intergenic
GAAGAAGACTGAGGGATATG+AGG 0.527158 3_4:-62060622 Msa0512310:CDS
AATGCCGAATGACCATTTGA+AGG 0.527488 3_4:+62062093 None:intergenic
ATCATATGGATTTGTTCCAA+AGG 0.534845 3_4:-62061454 Msa0512310:CDS
TTTATGATTACCTGCTCACC+TGG 0.538716 3_4:+62061685 None:intergenic
AGGAATAAGAGTGGTGGTGT+TGG 0.543116 3_4:+62064680 None:intergenic
CCTCTTCAGGGAAGAAATCA+GGG 0.543445 3_4:+62062216 None:intergenic
AGATGTTTCCAAAGCAAGCA+AGG 0.544329 3_4:+62060522 None:intergenic
TTGATCGATCCACAGGTAAG+TGG 0.549849 3_4:-62060853 Msa0512310:intron
AACAAGAAAAGAAAAGGCCG+TGG 0.551947 3_4:-62060367 Msa0512310:three_prime_UTR
GTTCGATTGCCCTCTATGGA+TGG 0.552132 3_4:-62061906 Msa0512310:CDS
GTTTAGATGCAATAATTCCA+CGG 0.556900 3_4:+62060350 None:intergenic
AAAGTTGATGTTGGTGAGAG+AGG 0.560244 3_4:-62064459 Msa0512310:CDS
TTATTAGGAGTGGAGCTGCC+CGG 0.560448 3_4:-62063804 Msa0512310:intron
GACAACTCAACTGAATCACT+TGG 0.561180 3_4:+62061420 None:intergenic
TTCTGGAATCGTTTCCAATG+AGG 0.561253 3_4:-62060563 Msa0512310:exon
CAAGGGTGGAAAATAATGAA+TGG 0.566267 3_4:+62060540 None:intergenic
TCCATTGATAAAGTTGATGT+TGG 0.569634 3_4:-62064468 Msa0512310:CDS
TCAACATCGAGTCCTTCAAA+TGG 0.570581 3_4:-62062105 Msa0512310:CDS
TATGGATTTGTTCCAAAGGA+GGG 0.574263 3_4:-62061450 Msa0512310:CDS
TCAATGGACATCTTCTGAGA+AGG 0.574688 3_4:+62064483 None:intergenic
GCATAAGCCATTAACTCCAA+TGG 0.580262 3_4:+62061210 None:intergenic
ATAAGGTAAGTTGCAAGCAA+TGG 0.582668 3_4:+62063740 None:intergenic
CTCCAGATACAATGATATGA+GGG 0.583933 3_4:-62062258 Msa0512310:intron
AGACTGAGGGATATGAGGAC+TGG 0.586138 3_4:-62060617 Msa0512310:CDS
GTTTCCAAAGCAAGCAAGGG+TGG 0.586701 3_4:+62060526 None:intergenic
ATATGGATTTGTTCCAAAGG+AGG 0.589672 3_4:-62061451 Msa0512310:CDS
GCATTCTTTCCATCCATAGA+GGG 0.590910 3_4:+62061897 None:intergenic
CTTCTCCTTATAGGACTCAT+CGG 0.591036 3_4:+62061380 None:intergenic
ATCTAGCTAAGCTATAGTAT+GGG 0.592792 3_4:-62064791 Msa0512310:five_prime_UTR
GTTAAAAGTAGGAATAAGAG+TGG 0.593264 3_4:+62064671 None:intergenic
TGAAGAAATATGGATTATCA+GGG 0.595613 3_4:-62061347 Msa0512310:intron
AATAGTTTCCATCAATGATG+AGG 0.598821 3_4:+62064578 None:intergenic
CTTTCTAAAGCAGCTAGCCG+TGG 0.603623 3_4:-62060782 Msa0512310:CDS
GTGTCATGAAATCTTCCAGA+TGG 0.603983 3_4:-62063706 Msa0512310:CDS
GCTTTGAAGAATATTAGGAA+AGG 0.605109 3_4:-62064429 Msa0512310:CDS
TTAGGGAGAGAGCAATTGAA+AGG 0.606641 3_4:-62062395 Msa0512310:CDS
CATCCCTGAAGCTTCAACCA+TGG 0.608019 3_4:+62064713 None:intergenic
TATGGATGGAAAGAATGCAT+TGG 0.613912 3_4:-62061892 Msa0512310:CDS
GTTAGTCCTTCAAGCATGAG+AGG 0.621487 3_4:-62061177 Msa0512310:CDS
CATGAGAGGAAAATTTGAAG+AGG 0.626190 3_4:-62061163 Msa0512310:intron
TGATTCATCATGTCTGCCCA+AGG 0.634383 3_4:+62061867 None:intergenic
CATGATGAATCATAGTTGTG+AGG 0.635915 3_4:-62061856 Msa0512310:intron
GATATTGCGAAGAAGACTGA+GGG 0.640825 3_4:-62060630 Msa0512310:CDS
ACTTAGTAACATGACAACCA+TGG 0.641315 3_4:-62064730 Msa0512310:exon
ACTTGTGTAATAGCGAGCGC+AGG 0.651320 3_4:-62060759 Msa0512310:CDS
AGAAGTGAGTATGGTTGACG+AGG 0.657046 3_4:+62063662 None:intergenic
GAATCATTCTCACATCCCCA+AGG 0.662703 3_4:+62064555 None:intergenic
ACGGATCGTCCCTATCAACC+AGG 0.664539 3_4:-62061703 Msa0512310:CDS
AAAAGTAGGAATAAGAGTGG+TGG 0.668503 3_4:+62064674 None:intergenic
GATGTTTCCAAAGCAAGCAA+GGG 0.669290 3_4:+62060523 None:intergenic
TCTTCTGTTGAGTTGTTTCG+GGG 0.672386 3_4:+62060807 None:intergenic
AGATATTGCGAAGAAGACTG+AGG 0.673237 3_4:-62060631 Msa0512310:CDS
TTGATGGAAACTATTCCTTG+GGG 0.675898 3_4:-62064570 Msa0512310:CDS
AAAGGGAATTGTCTTTACGA+CGG 0.683033 3_4:-62061722 Msa0512310:CDS
GGAGTGATGACAAGTTCAGG+AGG 0.684706 3_4:+62064387 None:intergenic
CTCGCTATTACACAAGTCCA+CGG 0.710247 3_4:+62060765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATTAATAAACTAAAA+TGG + chr3_4:62061048-62061067 None:intergenic 10.0%
!! TATTGAAATTATAGTTTAAA+AGG + chr3_4:62061808-62061827 None:intergenic 10.0%
!! ATTTCAATAGAAAAAACTAA+AGG - chr3_4:62061819-62061838 Msa0512310:intron 15.0%
!! ACGTAAATAATAGTTATAAA+CGG + chr3_4:62062092-62062111 None:intergenic 15.0%
!! TCTAGAAAATTATTAAGATT+TGG - chr3_4:62062408-62062427 Msa0512310:CDS 15.0%
!! ATAACATTTCTCATAAAAAA+AGG - chr3_4:62062556-62062575 Msa0512310:intron 15.0%
!! TAACATTTCTCATAAAAAAA+GGG - chr3_4:62062557-62062576 Msa0512310:intron 15.0%
!!! TCTAATATATTTTTTGTCAT+TGG - chr3_4:62063278-62063297 Msa0512310:intron 15.0%
!!! ATTTGTTAAATTAGATACAT+AGG - chr3_4:62063408-62063427 Msa0512310:intron 15.0%
!! TATAATAACTATGAAAACTT+AGG + chr3_4:62063745-62063764 None:intergenic 15.0%
!!! TATTTAATTTCTACTTACAA+AGG - chr3_4:62064365-62064384 Msa0512310:intron 15.0%
!!! ACTTGTTTGATTTTATCTAT+TGG - chr3_4:62060818-62060837 Msa0512310:CDS 20.0%
!! GAATTAATAAACTAAAATGG+TGG + chr3_4:62061045-62061064 None:intergenic 20.0%
!! ATATTCAAATCAAGTTTAGA+AGG + chr3_4:62061195-62061214 None:intergenic 20.0%
!!! ATTATTTTGCGTGTTTATAT+TGG - chr3_4:62061456-62061475 Msa0512310:CDS 20.0%
!!! TTATTTTGCGTGTTTATATT+GGG - chr3_4:62061457-62061476 Msa0512310:CDS 20.0%
!!! TATTTTACAATAATTCACCA+GGG - chr3_4:62061582-62061601 Msa0512310:intron 20.0%
!!! TTATACTTGCTATTTTCTTT+TGG - chr3_4:62061846-62061865 Msa0512310:intron 20.0%
!!! TTTTATTTTATTTTGACCCA+CGG + chr3_4:62062369-62062388 None:intergenic 20.0%
!! ATATATTAGGTACAAATGAT+CGG + chr3_4:62062718-62062737 None:intergenic 20.0%
!! GAACATATAATTCATGATAT+TGG - chr3_4:62063121-62063140 Msa0512310:intron 20.0%
!!! ATATTTTTTGTCATTGGATT+AGG - chr3_4:62063284-62063303 Msa0512310:intron 20.0%
!! TCATATGGAAAAAAATCAAA+CGG - chr3_4:62063571-62063590 Msa0512310:intron 20.0%
!! TAATGATTTCAAAAGCAATT+TGG - chr3_4:62064142-62064161 Msa0512310:intron 20.0%
!!! TTATTGGTTTTTGTTTTTGA+TGG - chr3_4:62064611-62064630 Msa0512310:CDS 20.0%
!!! TTTTTGTTTTTGATGGAAAT+AGG - chr3_4:62064618-62064637 Msa0512310:CDS 20.0%
!! AATGAAAACAAGAAAAGAAA+AGG - chr3_4:62064687-62064706 Msa0512310:CDS 20.0%
! TGAATTGTTTGGTTAAAAGT+AGG + chr3_4:62060403-62060422 None:intergenic 25.0%
!!! TTGTTGCTTTGAAGAATATT+AGG - chr3_4:62060626-62060645 Msa0512310:CDS 25.0%
! ACAAATAAAGAGAAGAAGAA+AGG + chr3_4:62060716-62060735 None:intergenic 25.0%
!! TTTCTTCTTCTCTTTATTTG+TGG - chr3_4:62060715-62060734 Msa0512310:intron 25.0%
! TGAGACTATGAGATAATTTA+TGG - chr3_4:62060853-62060872 Msa0512310:intron 25.0%
! TAATTTATGGAAACAGCTTA+TGG - chr3_4:62060866-62060885 Msa0512310:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr3_4:62060992-62061011 Msa0512310:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr3_4:62060993-62061012 Msa0512310:CDS 25.0%
! TTATACAAGTATTATGCTGT+CGG - chr3_4:62061108-62061127 Msa0512310:intron 25.0%
!!! ATTAAGCATCAATTTTAGCA+TGG + chr3_4:62061166-62061185 None:intergenic 25.0%
!!! TGGTGTTTATGATTTTGTTT+GGG - chr3_4:62061224-62061243 Msa0512310:CDS 25.0%
!! CTATTTTACAATAATTCACC+AGG - chr3_4:62061581-62061600 Msa0512310:intron 25.0%
! TCAATAGAAAAAACTAAAGG+TGG - chr3_4:62061822-62061841 Msa0512310:intron 25.0%
! TCAAGCAAAAAAATCTTCAA+TGG - chr3_4:62061976-62061995 Msa0512310:intron 25.0%
! AATCAACAACTATTTGACAA+CGG - chr3_4:62062055-62062074 Msa0512310:intron 25.0%
!!! TTTATTTTATTTTGACCCAC+GGG + chr3_4:62062368-62062387 None:intergenic 25.0%
! AAGATGAAATAGTACCAATA+CGG - chr3_4:62062494-62062513 Msa0512310:intron 25.0%
! ATGTTATGTTGACAACTTTA+TGG + chr3_4:62062543-62062562 None:intergenic 25.0%
! ATGAAAGAAATGAACTGTAT+AGG + chr3_4:62062599-62062618 None:intergenic 25.0%
! GAAAGGACTAATAATGTTAT+TGG - chr3_4:62062682-62062701 Msa0512310:intron 25.0%
! AATAATGTTATTGGAACGTA+TGG - chr3_4:62062691-62062710 Msa0512310:intron 25.0%
! TGCTAGTTATTGAAAAACAT+GGG + chr3_4:62062767-62062786 None:intergenic 25.0%
! TTGCTAGTTATTGAAAAACA+TGG + chr3_4:62062768-62062787 None:intergenic 25.0%
!! ATCTGAATCTGTTATTTGTA+TGG - chr3_4:62062921-62062940 Msa0512310:intron 25.0%
! GATTATGATAAATCGTCAAA+GGG - chr3_4:62063321-62063340 Msa0512310:intron 25.0%
! AATTTGCATTTCATTTACCA+AGG + chr3_4:62063450-62063469 None:intergenic 25.0%
! TTTCTTGTATCAAATTACAC+AGG - chr3_4:62063540-62063559 Msa0512310:intron 25.0%
! CATATGGAAAAAAATCAAAC+GGG - chr3_4:62063572-62063591 Msa0512310:intron 25.0%
! ATATGGAAAAAAATCAAACG+GGG - chr3_4:62063573-62063592 Msa0512310:intron 25.0%
! TTAGAACTGTTGAAGAAATA+TGG - chr3_4:62063703-62063722 Msa0512310:CDS 25.0%
!! TTGAAGAAATATGGATTATC+AGG - chr3_4:62063712-62063731 Msa0512310:CDS 25.0%
!! TGAAGAAATATGGATTATCA+GGG - chr3_4:62063713-62063732 Msa0512310:CDS 25.0%
! GTAACAAGTTTAATCATGAA+AGG + chr3_4:62063768-62063787 None:intergenic 25.0%
! AAATAAAACTACCTCGAAAA+AGG - chr3_4:62064010-62064029 Msa0512310:intron 25.0%
! AAAATACAACAAGTTCTTAC+AGG - chr3_4:62064103-62064122 Msa0512310:intron 25.0%
! AAAGGCTTGAAAATCTTTAA+TGG - chr3_4:62064473-62064492 Msa0512310:CDS 25.0%
! AAGGCTTGAAAATCTTTAAT+GGG - chr3_4:62064474-62064493 Msa0512310:CDS 25.0%
!!! AATTTAGCACTATTTTGAAG+AGG - chr3_4:62064790-62064809 Msa0512310:five_prime_UTR 25.0%
AATCTAGCTAAGCTATAGTA+TGG - chr3_4:62060268-62060287 Msa0512310:three_prime_UTR 30.0%
ATCTAGCTAAGCTATAGTAT+GGG - chr3_4:62060269-62060288 Msa0512310:three_prime_UTR 30.0%
GTTAAAAGTAGGAATAAGAG+TGG + chr3_4:62060392-62060411 None:intergenic 30.0%
!!! GTGTTGTTTTGTGAATTGTT+TGG + chr3_4:62060414-62060433 None:intergenic 30.0%
ATTCACAAAACAACACATCT+TGG - chr3_4:62060418-62060437 Msa0512310:three_prime_UTR 30.0%
AATAGTTTCCATCAATGATG+AGG + chr3_4:62060485-62060504 None:intergenic 30.0%
ATTGATGGAAACTATTCCTT+GGG - chr3_4:62060489-62060508 Msa0512310:three_prime_UTR 30.0%
ATTCATCTTCTCTTGAGAAA+TGG - chr3_4:62060536-62060555 Msa0512310:three_prime_UTR 30.0%
!! TCCATTGATAAAGTTGATGT+TGG - chr3_4:62060592-62060611 Msa0512310:CDS 30.0%
ACCAACATCAACTTTATCAA+TGG + chr3_4:62060596-62060615 None:intergenic 30.0%
!! GCTTTGAAGAATATTAGGAA+AGG - chr3_4:62060631-62060650 Msa0512310:CDS 30.0%
!! ATAGCTTTGAAAACAGCTTA+TGG - chr3_4:62060791-62060810 Msa0512310:CDS 30.0%
CTTATACATGCTTATGCTAT+AGG - chr3_4:62060963-62060982 Msa0512310:CDS 30.0%
AATTTCTGAACAAAGCTTCT+TGG + chr3_4:62061071-62061090 None:intergenic 30.0%
GATTTGAATATCTTGTGTTC+TGG - chr3_4:62061204-62061223 Msa0512310:CDS 30.0%
! CTGGTGTTTATGATTTTGTT+TGG - chr3_4:62061223-62061242 Msa0512310:CDS 30.0%
!! GGTGTTTATGATTTTGTTTG+GGG - chr3_4:62061225-62061244 Msa0512310:CDS 30.0%
!! TGATTTTGTTTGGGGTATTT+TGG - chr3_4:62061233-62061252 Msa0512310:CDS 30.0%
!!! TTTGGGGTATTTTGGTTATT+AGG - chr3_4:62061241-62061260 Msa0512310:CDS 30.0%
AAAAGAATTCAGTTCCAGAT+TGG - chr3_4:62061297-62061316 Msa0512310:intron 30.0%
CAGATGGTTCAGTTATATAT+CGG - chr3_4:62061370-62061389 Msa0512310:CDS 30.0%
AACCATACTCACTTCTTTAT+TGG - chr3_4:62061405-62061424 Msa0512310:CDS 30.0%
TACCAATAAAGAAGTGAGTA+TGG + chr3_4:62061410-62061429 None:intergenic 30.0%
GTGTTTATATTGGGAAGAAT+TGG - chr3_4:62061466-62061485 Msa0512310:CDS 30.0%
!!! ATTCACCAGGGTTTTAAAAA+AGG - chr3_4:62061594-62061613 Msa0512310:intron 30.0%
AATATAAGCCCATCCTAAAA+TGG - chr3_4:62061738-62061757 Msa0512310:CDS 30.0%
!!! CTTTTGTACCATTTTAGGAT+GGG + chr3_4:62061749-62061768 None:intergenic 30.0%
!! ACTTTTGTACCATTTTAGGA+TGG + chr3_4:62061750-62061769 None:intergenic 30.0%
!! CTTCACTTTTGTACCATTTT+AGG + chr3_4:62061754-62061773 None:intergenic 30.0%
ATTAAGAGGAAGAACTTAGT+GGG + chr3_4:62061949-62061968 None:intergenic 30.0%
AATTAAGAGGAAGAACTTAG+TGG + chr3_4:62061950-62061969 None:intergenic 30.0%
TGCTTGAAACTGAAATTAAG+AGG + chr3_4:62061963-62061982 None:intergenic 30.0%
!! AAACTTGTTCTTTTCTATCC+AGG + chr3_4:62062178-62062197 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr3_4:62062232-62062251 Msa0512310:CDS 30.0%
CAGTTCATTTCTTTCATTTC+AGG - chr3_4:62062602-62062621 Msa0512310:intron 30.0%
! GAAAGCACAGTAGATATATT+AGG + chr3_4:62062731-62062750 None:intergenic 30.0%
ATTGTATCTGGAGAACAAAT+GGG + chr3_4:62062795-62062814 None:intergenic 30.0%
GTAATTACATCACATTGAAC+AGG - chr3_4:62062866-62062885 Msa0512310:intron 30.0%
TGTTTCATATTTGAGAGAAG+TGG - chr3_4:62063088-62063107 Msa0512310:intron 30.0%
!!! AACTTGCTAGGGATTTTATT+TGG + chr3_4:62063240-62063259 None:intergenic 30.0%
!! TATTAGAGTTCAACTTGTTG+AGG + chr3_4:62063265-62063284 None:intergenic 30.0%
!!! TTTTTTGTCATTGGATTAGG+TGG - chr3_4:62063287-62063306 Msa0512310:intron 30.0%
GGATTATGATAAATCGTCAA+AGG - chr3_4:62063320-62063339 Msa0512310:intron 30.0%
!! CTTTAGAGTCATAAACACTT+TGG + chr3_4:62063485-62063504 None:intergenic 30.0%
AAGAAATCAATTGCAGTTTG+TGG + chr3_4:62063520-62063539 None:intergenic 30.0%
ACACAGGTGTTTATTTCATA+TGG - chr3_4:62063556-62063575 Msa0512310:intron 30.0%
! ATCATATGGATTTGTTCCAA+AGG - chr3_4:62063606-62063625 Msa0512310:CDS 30.0%
! TGTTTTCCTATAAGGATTAC+TGG - chr3_4:62063823-62063842 Msa0512310:intron 30.0%
GAATTCACAAAGATAGTAAG+TGG + chr3_4:62063927-62063946 None:intergenic 30.0%
TAACCAAATGTGTGATTCTT+TGG - chr3_4:62063966-62063985 Msa0512310:intron 30.0%
TCAAATGGAAACAAACAACT+AGG + chr3_4:62064191-62064210 None:intergenic 30.0%
!! TGAAAATCTTTAATGGGTTC+TGG - chr3_4:62064480-62064499 Msa0512310:CDS 30.0%
AAAATAATGAATGGCCTCAT+TGG + chr3_4:62064514-62064533 None:intergenic 30.0%
AGTTCATCACTTCATGTTAT+TGG - chr3_4:62064595-62064614 Msa0512310:CDS 30.0%
GTTTAGATGCAATAATTCCA+CGG + chr3_4:62064713-62064732 None:intergenic 30.0%
! CTTTGAGTTTGAGAAGTTGT+GGG + chr3_4:62060241-62060260 None:intergenic 35.0%
! ACTTTGAGTTTGAGAAGTTG+TGG + chr3_4:62060242-62060261 None:intergenic 35.0%
! TTTGATTTCAGCAGCAGATA+AGG - chr3_4:62060292-62060311 Msa0512310:three_prime_UTR 35.0%
ACTTAGTAACATGACAACCA+TGG - chr3_4:62060330-62060349 Msa0512310:three_prime_UTR 35.0%
AAAAGTAGGAATAAGAGTGG+TGG + chr3_4:62060389-62060408 None:intergenic 35.0%
CATTGATGGAAACTATTCCT+TGG - chr3_4:62060488-62060507 Msa0512310:three_prime_UTR 35.0%
TTGATGGAAACTATTCCTTG+GGG - chr3_4:62060490-62060509 Msa0512310:three_prime_UTR 35.0%
AAGGAAGAGTTTACAGAATC+AGG + chr3_4:62060697-62060716 None:intergenic 35.0%
CTATCTATGCACTATGCTTA+TGG + chr3_4:62060897-62060916 None:intergenic 35.0%
!!! GGTATTTTGGTTATTAGGAG+TGG - chr3_4:62061246-62061265 Msa0512310:CDS 35.0%
ATAAGGTAAGTTGCAAGCAA+TGG + chr3_4:62061323-62061342 None:intergenic 35.0%
! TGACACTAGCTTCACTTATA+AGG + chr3_4:62061340-62061359 None:intergenic 35.0%
CGATATATAACTGAACCATC+TGG + chr3_4:62061372-62061391 None:intergenic 35.0%
! AAATGCTTTGTTACCTTGCT+AGG - chr3_4:62061531-62061550 Msa0512310:intron 35.0%
! AATGCTTTGTTACCTTGCTA+GGG - chr3_4:62061532-62061551 Msa0512310:intron 35.0%
!!! TCGATCCTTTTTTAAAACCC+TGG + chr3_4:62061602-62061621 None:intergenic 35.0%
AAAAGGATCGAAGTAACAGT+TGG - chr3_4:62061611-62061630 Msa0512310:intron 35.0%
TCTTGTACGGATATAGATGA+AGG + chr3_4:62061885-62061904 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr3_4:62062201-62062220 Msa0512310:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr3_4:62062202-62062221 Msa0512310:intron 35.0%
GCGACAAACCTATCAAAATA+AGG - chr3_4:62062231-62062250 Msa0512310:CDS 35.0%
ACCTATCAAAATAAGGGTTC+CGG - chr3_4:62062238-62062257 Msa0512310:CDS 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG + chr3_4:62062267-62062286 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG + chr3_4:62062270-62062289 None:intergenic 35.0%
! AATGAAAAAGTGTGCCTCTT+AGG - chr3_4:62062303-62062322 Msa0512310:intron 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr3_4:62062349-62062368 Msa0512310:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr3_4:62062350-62062369 Msa0512310:intron 35.0%
!! ATTAGCTGTTTCTCTGATGT+AGG + chr3_4:62062471-62062490 None:intergenic 35.0%
ACCAATACGGTATCTTTAGA+CGG - chr3_4:62062507-62062526 Msa0512310:intron 35.0%
CATTGTATCTGGAGAACAAA+TGG + chr3_4:62062796-62062815 None:intergenic 35.0%
TCTCCAGATACAATGATATG+AGG - chr3_4:62062801-62062820 Msa0512310:intron 35.0%
CTCCAGATACAATGATATGA+GGG - chr3_4:62062802-62062821 Msa0512310:intron 35.0%
AACCCTCATATCATTGTATC+TGG + chr3_4:62062807-62062826 None:intergenic 35.0%
GTGATGTAATTACCTCTTCA+GGG + chr3_4:62062859-62062878 None:intergenic 35.0%
TGTGATGTAATTACCTCTTC+AGG + chr3_4:62062860-62062879 None:intergenic 35.0%
! CTGTTATTTGTATGGCTTTC+AGG - chr3_4:62062929-62062948 Msa0512310:intron 35.0%
TATGGATGGAAAGAATGCAT+TGG - chr3_4:62063168-62063187 Msa0512310:intron 35.0%
!! AAAGAATGCATTGGTTCCTT+GGG - chr3_4:62063177-62063196 Msa0512310:intron 35.0%
CATGATGAATCATAGTTGTG+AGG - chr3_4:62063204-62063223 Msa0512310:intron 35.0%
ATGAATCATAGTTGTGAGGT+AGG - chr3_4:62063208-62063227 Msa0512310:intron 35.0%
TGAATCATAGTTGTGAGGTA+GGG - chr3_4:62063209-62063228 Msa0512310:intron 35.0%
!! TTGTTGAGGAAAACTTGCTA+GGG + chr3_4:62063251-62063270 None:intergenic 35.0%
AAAGGGAATTGTCTTTACGA+CGG - chr3_4:62063338-62063357 Msa0512310:intron 35.0%
CAGGTAATCATAAACTCAGA+TGG - chr3_4:62063384-62063403 Msa0512310:intron 35.0%
GATAAGACAGTTAAGTACCT+TGG - chr3_4:62063430-62063449 Msa0512310:intron 35.0%
! ATATGGATTTGTTCCAAAGG+AGG - chr3_4:62063609-62063628 Msa0512310:CDS 35.0%
! TATGGATTTGTTCCAAAGGA+GGG - chr3_4:62063610-62063629 Msa0512310:CDS 35.0%
! CAGTTCTAACTTCTCCTTAT+AGG + chr3_4:62063692-62063711 None:intergenic 35.0%
TATAGGAAAACACTGAGATC+TGG + chr3_4:62063815-62063834 None:intergenic 35.0%
! GATCTCAGTGTTTTCCTATA+AGG - chr3_4:62063815-62063834 Msa0512310:intron 35.0%
TTCCTATAAGGATTACTGGT+TGG - chr3_4:62063827-62063846 Msa0512310:intron 35.0%
! AATTTTCCTCTCATGCTTGA+AGG + chr3_4:62063892-62063911 None:intergenic 35.0%
CATGAGAGGAAAATTTGAAG+AGG - chr3_4:62063897-62063916 Msa0512310:intron 35.0%
TGTCCAAAGAATCACACATT+TGG + chr3_4:62063972-62063991 None:intergenic 35.0%
!!! CGAGGTAGTTTTATTTGATG+CGG + chr3_4:62064006-62064025 None:intergenic 35.0%
!! ATATCTCAAGTCCTTTTTCG+AGG + chr3_4:62064024-62064043 None:intergenic 35.0%
CTTGAGATATCCTGAAATAG+AGG - chr3_4:62064034-62064053 Msa0512310:intron 35.0%
! AGTCTTCTGTTGAGTTGTTT+CGG + chr3_4:62064258-62064277 None:intergenic 35.0%
! ATGAGGACTGGTGAATTAAA+AGG - chr3_4:62064455-62064474 Msa0512310:CDS 35.0%
CAAGGGTGGAAAATAATGAA+TGG + chr3_4:62064523-62064542 None:intergenic 35.0%
! TCAATGGACATCTTCTGAGA+AGG + chr3_4:62060580-62060599 None:intergenic 40.0%
!! AAAGTTGATGTTGGTGAGAG+AGG - chr3_4:62060601-62060620 Msa0512310:CDS 40.0%
TCGTCACATAACTGTCTATG+AGG + chr3_4:62061019-62061038 None:intergenic 40.0%
TTCAATACTTCACCAGCTTC+CGG + chr3_4:62061278-62061297 None:intergenic 40.0%
GTGTCATGAAATCTTCCAGA+TGG - chr3_4:62061354-62061373 Msa0512310:CDS 40.0%
CTGCATTCTCTGCAATATCA+AGG + chr3_4:62061649-62061668 None:intergenic 40.0%
CATCTATATCCGTACAAGAG+AGG - chr3_4:62061886-62061905 Msa0512310:CDS 40.0%
AGAGAAACACCTCTCTTGTA+CGG + chr3_4:62061898-62061917 None:intergenic 40.0%
TTTACGTGACTATGAGAGAG+AGG - chr3_4:62062105-62062124 Msa0512310:CDS 40.0%
TTACGTGACTATGAGAGAGA+GGG - chr3_4:62062106-62062125 Msa0512310:CDS 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG + chr3_4:62062242-62062261 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG + chr3_4:62062260-62062279 None:intergenic 40.0%
CAGAACTTATGTAGCCTAAG+AGG + chr3_4:62062320-62062339 None:intergenic 40.0%
ACCGTCTAAAGATACCGTAT+TGG + chr3_4:62062511-62062530 None:intergenic 40.0%
ACTTGGAAGCTTCACAGATT+AGG - chr3_4:62062647-62062666 Msa0512310:intron 40.0%
CTTGGAAGCTTCACAGATTA+GGG - chr3_4:62062648-62062667 Msa0512310:intron 40.0%
TTAGGGAGAGAGCAATTGAA+AGG - chr3_4:62062665-62062684 Msa0512310:intron 40.0%
! AGGGAAGAAATCAGGGTATT+TGG + chr3_4:62062840-62062859 None:intergenic 40.0%
TCAACATCGAGTCCTTCAAA+TGG - chr3_4:62062955-62062974 Msa0512310:intron 40.0%
GAGTCCTTCAAATGGTCATT+CGG - chr3_4:62062963-62062982 Msa0512310:intron 40.0%
AATGCCGAATGACCATTTGA+AGG + chr3_4:62062970-62062989 None:intergenic 40.0%
GCATTCTTTCCATCCATAGA+GGG + chr3_4:62063166-62063185 None:intergenic 40.0%
TGCATTCTTTCCATCCATAG+AGG + chr3_4:62063167-62063186 None:intergenic 40.0%
!! GAAAGAATGCATTGGTTCCT+TGG - chr3_4:62063176-62063195 Msa0512310:intron 40.0%
! CTTGTTGAGGAAAACTTGCT+AGG + chr3_4:62063252-62063271 None:intergenic 40.0%
!!! GGATTAGGTGGAGACTTTTT+TGG - chr3_4:62063299-62063318 Msa0512310:intron 40.0%
TTTATGATTACCTGCTCACC+TGG + chr3_4:62063378-62063397 None:intergenic 40.0%
GAGTCATAAACACTTTGGCA+AGG + chr3_4:62063480-62063499 None:intergenic 40.0%
GACAACTCAACTGAATCACT+TGG + chr3_4:62063643-62063662 None:intergenic 40.0%
GAAATCCGATGAGTCCTATA+AGG - chr3_4:62063675-62063694 Msa0512310:CDS 40.0%
CTTCTCCTTATAGGACTCAT+CGG + chr3_4:62063683-62063702 None:intergenic 40.0%
GCATAAGCCATTAACTCCAA+TGG + chr3_4:62063853-62063872 None:intergenic 40.0%
TGTGTGATTCTTTGGACAGA+TGG - chr3_4:62063974-62063993 Msa0512310:intron 40.0%
!!! GGTAGTTTTATTTGATGCGG+CGG + chr3_4:62064003-62064022 None:intergenic 40.0%
AATGCTTGCTCCTCTATTTC+AGG + chr3_4:62064047-62064066 None:intergenic 40.0%
ACAACAAGTTCTTACAGGCA+AGG - chr3_4:62064108-62064127 Msa0512310:intron 40.0%
TTTCCATTTGATCGATCCAC+AGG - chr3_4:62064200-62064219 Msa0512310:intron 40.0%
TTACCTGTGGATCGATCAAA+TGG + chr3_4:62064206-62064225 None:intergenic 40.0%
! TCTTCTGTTGAGTTGTTTCG+GGG + chr3_4:62064256-62064275 None:intergenic 40.0%
! GTCTTCTGTTGAGTTGTTTC+GGG + chr3_4:62064257-62064276 None:intergenic 40.0%
AGATATTGCGAAGAAGACTG+AGG - chr3_4:62064429-62064448 Msa0512310:CDS 40.0%
GATATTGCGAAGAAGACTGA+GGG - chr3_4:62064430-62064449 Msa0512310:CDS 40.0%
!! TTCTGGAATCGTTTCCAATG+AGG - chr3_4:62064497-62064516 Msa0512310:CDS 40.0%
GATGTTTCCAAAGCAAGCAA+GGG + chr3_4:62064540-62064559 None:intergenic 40.0%
AGATGTTTCCAAAGCAAGCA+AGG + chr3_4:62064541-62064560 None:intergenic 40.0%
AACAAGAAAAGAAAAGGCCG+TGG - chr3_4:62064693-62064712 Msa0512310:CDS 40.0%
ACAACCATGGTTGAAGCTTC+AGG - chr3_4:62060343-62060362 Msa0512310:three_prime_UTR 45.0%
CAACCATGGTTGAAGCTTCA+GGG - chr3_4:62060344-62060363 Msa0512310:three_prime_UTR 45.0%
! AGGAATAAGAGTGGTGGTGT+TGG + chr3_4:62060383-62060402 None:intergenic 45.0%
CTCTGCAACCTCATCATTGA+TGG - chr3_4:62060474-62060493 Msa0512310:three_prime_UTR 45.0%
GAATCATTCTCACATCCCCA+AGG + chr3_4:62060508-62060527 None:intergenic 45.0%
GAGAAATGGTTGTCTCAGTC+TGG - chr3_4:62060550-62060569 Msa0512310:exon 45.0%
TCAGGAGTGATGACAAGTTC+AGG + chr3_4:62060679-62060698 None:intergenic 45.0%
TCAATACTTCACCAGCTTCC+GGG + chr3_4:62061277-62061296 None:intergenic 45.0%
AGAAGTGAGTATGGTTGACG+AGG + chr3_4:62061401-62061420 None:intergenic 45.0%
ATCTCACATTCTCCCTAGCA+AGG + chr3_4:62061547-62061566 None:intergenic 45.0%
GCAGAGAATGCAGTCAAATG+TGG - chr3_4:62061656-62061675 Msa0512310:intron 45.0%
!! GCTGTTTCTCTGATGTAGGA+GGG + chr3_4:62062467-62062486 None:intergenic 45.0%
!! AGCTGTTTCTCTGATGTAGG+AGG + chr3_4:62062468-62062487 None:intergenic 45.0%
AGCAGAACTAGATCGCTACT+TGG - chr3_4:62062630-62062649 Msa0512310:intron 45.0%
CCTCTTCAGGGAAGAAATCA+GGG + chr3_4:62062847-62062866 None:intergenic 45.0%
ACCTCTTCAGGGAAGAAATC+AGG + chr3_4:62062848-62062867 None:intergenic 45.0%
TCATGATATTGGCACCGTGT+AGG - chr3_4:62063132-62063151 Msa0512310:intron 45.0%
TGATTCATCATGTCTGCCCA+AGG + chr3_4:62063196-62063215 None:intergenic 45.0%
GGGGAGCTTCTGTTATCATA+TGG - chr3_4:62063592-62063611 Msa0512310:CDS 45.0%
GGCCAACCAGTAATCCTTAT+AGG + chr3_4:62063832-62063851 None:intergenic 45.0%
! AAGGATTACTGGTTGGCCAT+TGG - chr3_4:62063834-62063853 Msa0512310:intron 45.0%
! TGGTTGGCCATTGGAGTTAA+TGG - chr3_4:62063843-62063862 Msa0512310:intron 45.0%
GTTAGTCCTTCAAGCATGAG+AGG - chr3_4:62063883-62063902 Msa0512310:intron 45.0%
TTGATCGATCCACAGGTAAG+TGG - chr3_4:62064207-62064226 Msa0512310:intron 45.0%
GGTAAGTGGATCGCTAGATT+TGG - chr3_4:62064221-62064240 Msa0512310:intron 45.0%
CTCGCTATTACACAAGTCCA+CGG + chr3_4:62064298-62064317 None:intergenic 45.0%
GAAGAAGACTGAGGGATATG+AGG - chr3_4:62064438-62064457 Msa0512310:CDS 45.0%
! TTTTCCACCCTTGCTTGCTT+TGG - chr3_4:62064530-62064549 Msa0512310:CDS 45.0%
CATCCCTGAAGCTTCAACCA+TGG + chr3_4:62060350-62060369 None:intergenic 50.0%
GGAGTGATGACAAGTTCAGG+AGG + chr3_4:62060676-62060695 None:intergenic 50.0%
ACTGTCTATGAGGCCCTGTT+TGG + chr3_4:62061009-62061028 None:intergenic 50.0%
TTATTAGGAGTGGAGCTGCC+CGG - chr3_4:62061256-62061275 Msa0512310:intron 50.0%
GTTGCAAGCAATGGCCAATC+TGG + chr3_4:62061314-62061333 None:intergenic 50.0%
GTCAAATGTGGCCTCAATCG+CGG - chr3_4:62061668-62061687 Msa0512310:intron 50.0%
GGAGAGAGAATGACGCAGTA+CGG - chr3_4:62062127-62062146 Msa0512310:intron 50.0%
CCCTGATTTCTTCCCTGAAG+AGG - chr3_4:62062844-62062863 Msa0512310:intron 50.0%
AGAGGGCAATCGAACCTACA+CGG + chr3_4:62063149-62063168 None:intergenic 50.0%
GTAGGTTCGATTGCCCTCTA+TGG - chr3_4:62063150-62063169 Msa0512310:intron 50.0%
GTTCGATTGCCCTCTATGGA+TGG - chr3_4:62063154-62063173 Msa0512310:intron 50.0%
! ACCTGCTCACCTGGTTGATA+GGG + chr3_4:62063369-62063388 None:intergenic 50.0%
TACCTGCTCACCTGGTTGAT+AGG + chr3_4:62063370-62063389 None:intergenic 50.0%
TCTAGCGATCCACTTACCTG+TGG + chr3_4:62064219-62064238 None:intergenic 50.0%
!! CTTTCTAAAGCAGCTAGCCG+TGG - chr3_4:62064278-62064297 Msa0512310:intron 50.0%
ACTTGTGTAATAGCGAGCGC+AGG - chr3_4:62064301-62064320 Msa0512310:intron 50.0%
AGACTGAGGGATATGAGGAC+TGG - chr3_4:62064443-62064462 Msa0512310:CDS 50.0%
GTTTCCAAAGCAAGCAAGGG+TGG + chr3_4:62064537-62064556 None:intergenic 50.0%
! ATGACGCAGTACGGAAGCGT+AGG - chr3_4:62062136-62062155 Msa0512310:intron 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr3_4:62062137-62062156 Msa0512310:intron 55.0%
! GGGTTAGCAAGCGCTAAACC+TGG - chr3_4:62062157-62062176 Msa0512310:intron 55.0%
! CGGCATTCTTTTCTCGCGCA+TGG - chr3_4:62062983-62063002 Msa0512310:intron 55.0%
TCGCGCATGGTGAGTCAATC+TGG - chr3_4:62062996-62063015 Msa0512310:intron 55.0%
ACGGATCGTCCCTATCAACC+AGG - chr3_4:62063357-62063376 Msa0512310:intron 55.0%
TCCCTATCAACCAGGTGAGC+AGG - chr3_4:62063365-62063384 Msa0512310:intron 55.0%
CTTGGATTCGTGCCCTCCTT+TGG + chr3_4:62063625-62063644 None:intergenic 55.0%
GCCTCAATCGCGGTCAGCTG+CGG - chr3_4:62061678-62061697 Msa0512310:intron 65.0%
GAGTGGAGCTGCCCGGAAGC+TGG - chr3_4:62061263-62061282 Msa0512310:intron 70.0%
GCCGCAGCTGACCGCGATTG+AGG + chr3_4:62061682-62061701 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62060232 62064850 62060232 ID=Msa0512310;Name=Msa0512310
chr3_4 mRNA 62060232 62064850 62060232 ID=Msa0512310-mRNA-1;Parent=Msa0512310;Name=Msa0512310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|0.90|0.91|1|1|1|12|333|519
chr3_4 exon 62060232 62060651 62060232 ID=Msa0512310-mRNA-1:exon:15315;Parent=Msa0512310-mRNA-1
chr3_4 exon 62060738 62060860 62060738 ID=Msa0512310-mRNA-1:exon:15314;Parent=Msa0512310-mRNA-1
chr3_4 exon 62060958 62061089 62060958 ID=Msa0512310-mRNA-1:exon:15313;Parent=Msa0512310-mRNA-1
chr3_4 exon 62061164 62061266 62061164 ID=Msa0512310-mRNA-1:exon:15312;Parent=Msa0512310-mRNA-1
chr3_4 exon 62061348 62061520 62061348 ID=Msa0512310-mRNA-1:exon:15311;Parent=Msa0512310-mRNA-1
chr3_4 exon 62061696 62061776 62061696 ID=Msa0512310-mRNA-1:exon:15310;Parent=Msa0512310-mRNA-1
chr3_4 exon 62061857 62061928 62061857 ID=Msa0512310-mRNA-1:exon:15309;Parent=Msa0512310-mRNA-1
chr3_4 exon 62062078 62062131 62062078 ID=Msa0512310-mRNA-1:exon:15308;Parent=Msa0512310-mRNA-1
chr3_4 exon 62062217 62062274 62062217 ID=Msa0512310-mRNA-1:exon:15307;Parent=Msa0512310-mRNA-1
chr3_4 exon 62062375 62062458 62062375 ID=Msa0512310-mRNA-1:exon:15306;Parent=Msa0512310-mRNA-1
chr3_4 exon 62063590 62063819 62063590 ID=Msa0512310-mRNA-1:exon:15305;Parent=Msa0512310-mRNA-1
chr3_4 exon 62064380 62064850 62064380 ID=Msa0512310-mRNA-1:exon:15304;Parent=Msa0512310-mRNA-1
chr3_4 five_prime_UTR 62064743 62064850 62064743 ID=Msa0512310-mRNA-1:five_prime_utr;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62064380 62064742 62064380 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62063590 62063819 62063590 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62062375 62062458 62062375 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62062217 62062274 62062217 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62062078 62062131 62062078 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62061857 62061928 62061857 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62061696 62061776 62061696 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62061348 62061520 62061348 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62061164 62061266 62061164 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62060958 62061089 62060958 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62060738 62060860 62060738 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 CDS 62060565 62060651 62060565 ID=Msa0512310-mRNA-1:cds;Parent=Msa0512310-mRNA-1
chr3_4 three_prime_UTR 62060232 62060564 62060232 ID=Msa0512310-mRNA-1:three_prime_utr;Parent=Msa0512310-mRNA-1
Gene Sequence

>Msa0512310

ATGACAACCATGGTTGAAGCTTCAGGGATGATGATGTTCACCAACACCACCACTCTTATTCCTACTTTTAACCAAACAATTCACAAAACAACACATCTTGGATTCTCACGTAGAAACAATGCTCATTTTTCACTCTCTGCAACCTCATCATTGATGGAAACTATTCCTTGGGGATGTGAGAATGATTCAATTGAAAATTCATCTTCTCTTGAGAAATGGTTGTCTCAGTCTGGTCTTCCTTCTCAGAAGATGTCCATTGATAAAGTTGATGTTGGTGAGAGAGGACTTGTTGCTTTGAAGAATATTAGGAAAGGAGAGAAGCTTCTTTTTGTTCCTCCTGAACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTTCCAGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTGTCATGAAATCTTCCAGATGGTTCAGTTATATATCGGCTTTACCTCGTCAACCATACTCACTTCTTTATTGGTACTTGAATTCAATTGCTCTTATCATGAATTATTTTGCGTGTTTATATTGGGAAGAATTGGAGAAGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTTCGATTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGACATGATGAATCATAGTTGTGAGGTGGAGACTTTTTTGGATTATGATAAATCGTCAAAGGGAATTGTCTTTACGACGGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCAGGATCTCAGTGTTTTCCTATAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATCGTTTCCAATGA

Protein sequence

>Msa0512310

MTTMVEASGMMMFTNTTTLIPTFNQTIHKTTHLGFSRRNNAHFSLSATSSLMETIPWGCENDSIENSSSLEKWLSQSGLPSQKMSIDKVDVGERGLVALKNIRKGEKLLFVPPELVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASVMKSSRWFSYISALPRQPYSLLYWYLNSIALIMNYFACLYWEELEKSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNRFQ*