AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434090 MtrunA17_Chr3g0140351 97.143 840 5 3 1 826 1 835 0.0 1674
Msa0434090 MtrunA17_Chr2g0331131 79.857 839 144 5 8 826 3 836 0.0 1401
Msa0434090 MtrunA17_Chr8g0340411 79.167 840 146 6 7 826 2 832 0.0 1392
Msa0434090 MtrunA17_Chr2g0292391 65.197 839 253 11 16 826 9 836 0.0 1125
Msa0434090 MtrunA17_Chr4g0028991 64.174 829 273 8 16 826 24 846 0.0 1091
Msa0434090 MtrunA17_Chr2g0326731 60.259 848 303 11 2 826 3 839 0.0 1020
Msa0434090 MtrunA17_Chr2g0322731 24.275 655 346 26 20 576 103 705 7.98e-27 117
Msa0434090 MtrunA17_Chr8g0350321 22.041 490 294 17 204 663 375 806 5.11e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434090 AT4G32880.1 78.271 833 149 10 16 826 11 833 0.0 1343
Msa0434090 AT1G52150.1 76.741 847 164 8 2 826 1 836 0.0 1336
Msa0434090 AT1G52150.2 76.741 847 165 8 2 826 1 837 0.0 1335
Msa0434090 AT1G52150.3 76.095 799 158 8 2 778 1 788 0.0 1238
Msa0434090 AT2G34710.1 63.372 860 273 10 1 826 1 852 0.0 1077
Msa0434090 AT1G30490.1 61.557 848 280 10 9 826 10 841 0.0 1053
Msa0434090 AT5G60690.1 61.613 831 286 8 18 826 23 842 0.0 1033
Msa0434090 AT5G32670.1 63.514 74 27 0 284 357 37 110 1.88e-23 99.0
Msa0434090 AT1G79840.2 23.520 625 360 28 20 576 133 707 4.13e-22 102
Msa0434090 AT1G79840.3 23.520 625 360 27 20 576 46 620 4.22e-22 102
Msa0434090 AT1G79840.6 23.520 625 360 27 20 576 46 620 4.22e-22 102
Msa0434090 AT1G79840.1 23.520 625 360 27 20 576 104 678 5.24e-22 102
Msa0434090 AT1G79840.4 23.764 526 314 23 20 486 104 601 3.03e-20 96.3
Msa0434090 AT3G03260.1 22.822 482 251 21 15 400 19 475 6.98e-13 72.8
Msa0434090 AT3G03260.2 22.822 482 251 21 15 400 19 475 1.11e-12 72.0
Msa0434090 AT1G05230.8 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.4 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.9 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.10 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.7 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.11 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.2 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.6 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.5 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0434090 AT1G05230.1 20.816 490 287 16 204 664 300 717 2.92e-12 70.9

Find 237 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATCTTATCTATGGTATT+TGG 0.142289 3_2:+86852101 Msa0434090:three_prime_UTR
ACTATACCTGCTGCATTATC+TGG 0.179885 3_2:-86851709 None:intergenic
GGTTCTGTGTTGCTCTTTAA+AGG 0.201093 3_2:+86851437 Msa0434090:CDS
TTTAGGCTTTACGTCATTTA+AGG 0.223191 3_2:+86849283 Msa0434090:intron
CGAGTAAGCGTTTGTGCTTC+AGG 0.246753 3_2:-86851208 None:intergenic
TGGCACCAGGTCGCGACTTC+TGG 0.250399 3_2:+86848691 Msa0434090:CDS
TGGAAGAAGGTAGCTTAATT+AGG 0.254921 3_2:+86846589 Msa0434090:five_prime_UTR
CAACTCAAAATAATCTTCTT+TGG 0.255574 3_2:-86846557 None:intergenic
CAAAGCTTCCATGTTGTTAC+AGG 0.257668 3_2:+86849654 Msa0434090:CDS
ATGATCAACAATATGAATTA+TGG 0.263716 3_2:-86848993 None:intergenic
GCACTTTCCCCTTCGCGTTT+TGG 0.273753 3_2:+86851151 Msa0434090:CDS
CTAACCTTTAATCTTATCTA+TGG 0.279952 3_2:+86852094 Msa0434090:three_prime_UTR
GCTACATGGACCAGCTTTAA+TGG 0.282319 3_2:-86850099 None:intergenic
GGGGCCCGAGCAGGAGCTTT+TGG 0.283710 3_2:+86850128 Msa0434090:CDS
ACAGCTCTCTCATAAGTTAT+TGG 0.294717 3_2:-86851956 None:intergenic
AATACCATAGATAAGATTAA+AGG 0.305411 3_2:-86852098 None:intergenic
AATAAATATACCTTCTGTTC+TGG 0.308695 3_2:-86846818 None:intergenic
CTGCGAAGAGAAGTAGGTTT+TGG 0.316368 3_2:-86846729 None:intergenic
TGTCTAGTAGATTAAAAGAT+AGG 0.320395 3_2:+86852048 Msa0434090:exon
GCTGCGCTACACATCACTTT+TGG 0.327871 3_2:+86848716 Msa0434090:CDS
CTAAAATACTTACTTGTAAG+AGG 0.330219 3_2:-86850410 None:intergenic
TAACCTTCATCCCGGGCATT+TGG 0.334513 3_2:-86847703 None:intergenic
AGCAATGAACAAACTGCTTA+TGG 0.337413 3_2:+86846988 Msa0434090:CDS
TCTGTTTCATGTTCATCAAT+TGG 0.338860 3_2:+86852020 Msa0434090:CDS
ACGAAAACCAGAAGGCAAAA+TGG 0.343351 3_2:-86850772 None:intergenic
AACCTAAACAGATCAAAGTT+TGG 0.353061 3_2:+86846793 Msa0434090:CDS
CCAAGGGATGCAAGCCCTGC+TGG 0.354906 3_2:+86847428 Msa0434090:CDS
GCACTTGAGGTTGGAACCAC+TGG 0.370337 3_2:+86850965 Msa0434090:CDS
TTATAGATCATTATACTATA+CGG 0.372198 3_2:-86846407 None:intergenic
TAAAGTGGGCGCAAAACTTC+AGG 0.378668 3_2:-86849128 None:intergenic
AACCAAACTTTGATCTGTTT+AGG 0.378767 3_2:-86846795 None:intergenic
AATGTTATGTCCACAGGAAA+TGG 0.379586 3_2:+86848498 Msa0434090:CDS
TCAAGTGCTTCCACTTGCTC+TGG 0.381079 3_2:-86846687 None:intergenic
TTGAGAACATGGGCTACTAT+AGG 0.388073 3_2:+86850358 Msa0434090:CDS
AGGAAGTTAATTACCCTTGC+AGG 0.390715 3_2:-86848329 None:intergenic
AGGATGATGGCAGTGAGTTC+AGG 0.392334 3_2:+86846609 Msa0434090:exon
CCAGCAGGGCTTGCATCCCT+TGG 0.392669 3_2:-86847428 None:intergenic
CAGGCACGTGCAGCCACTCC+AGG 0.395142 3_2:-86848287 None:intergenic
CGACCTGGTGCCAGAGTTGT+TGG 0.396680 3_2:-86848681 None:intergenic
AAAGCTCCTGCTCGGGCCCC+TGG 0.404062 3_2:-86850125 None:intergenic
TGAGAACATGGGCTACTATA+GGG 0.407729 3_2:+86850359 Msa0434090:CDS
GGGTGTCAATTCAGGTCATT+CGG 0.412267 3_2:+86851000 Msa0434090:CDS
CTTGCTTCTGCACTTGAGGT+TGG 0.412761 3_2:+86850956 Msa0434090:CDS
CAGGGTTTCATGTGTATTCA+AGG 0.417991 3_2:+86851905 Msa0434090:intron
GTTGAGTGGGTCCAAATGCC+CGG 0.418997 3_2:+86847692 Msa0434090:CDS
GAATATTGTGTGTGTGCAAT+AGG 0.419784 3_2:-86846496 None:intergenic
TCAGAGAAAGATGCATCAAT+TGG 0.421642 3_2:-86850741 None:intergenic
GCTGGTCCATGTAGCTTGCC+AGG 0.423708 3_2:+86850107 Msa0434090:CDS
GGTGTCAATTCAGGTCATTC+GGG 0.426778 3_2:+86851001 Msa0434090:CDS
CTTCCCCATCCTGTCACACT+TGG 0.428131 3_2:-86849330 None:intergenic
TTTACGTTTGCGAATCAAGC+TGG 0.434930 3_2:+86851587 Msa0434090:CDS
CGAAAACCAGAAGGCAAAAT+GGG 0.440093 3_2:-86850771 None:intergenic
GCACGTGCCTGCGGCCTCGT+GGG 0.440499 3_2:+86848299 Msa0434090:CDS
AATCGATACTTAAATCCCTT+TGG 0.442177 3_2:+86851400 Msa0434090:CDS
AGCTTGCCAGGGGCCCGAGC+AGG 0.444554 3_2:+86850119 Msa0434090:CDS
GTTTGTGCTTCAGGAGTTCC+AGG 0.444785 3_2:-86851199 None:intergenic
CGATCTTGCTTCTGCACTTG+AGG 0.446890 3_2:+86850952 Msa0434090:CDS
GGTGGATCTGTAACAGCTAT+AGG 0.449783 3_2:+86851230 Msa0434090:CDS
ACCACCAAAAGCTCCTGCTC+GGG 0.452836 3_2:-86850132 None:intergenic
CATTGAATTGCTTTACATGC+AGG 0.453193 3_2:+86848527 Msa0434090:CDS
ACCATGAGAGCCTATCTTTG+AGG 0.453750 3_2:-86848446 None:intergenic
CTGCGATATTATCTTGAAGA+TGG 0.455006 3_2:-86851072 None:intergenic
CTGTAACAACATGGAAGCTT+TGG 0.455633 3_2:-86849653 None:intergenic
CGGGCCCCTGGCAAGCTACA+TGG 0.457289 3_2:-86850113 None:intergenic
GAAGGTTACAAGCTGTGAAC+AGG 0.458532 3_2:+86846957 Msa0434090:CDS
AGTTTGTCTGTGACAATTGT+TGG 0.459139 3_2:-86846433 None:intergenic
GCAGGGCTTGCATCCCTTGG+TGG 0.461144 3_2:-86847425 None:intergenic
GACCACCAAAAGCTCCTGCT+CGG 0.462737 3_2:-86850133 None:intergenic
GCTTGCTCAGAGAACAACTA+TGG 0.463260 3_2:+86849166 Msa0434090:CDS
GGTTATCAAGCTTGAGAACA+TGG 0.465661 3_2:+86850347 Msa0434090:CDS
CTATACCTGCTGCATTATCT+GGG 0.466306 3_2:-86851708 None:intergenic
GCAATTTCTCATGGTTCCCC+TGG 0.467349 3_2:+86848269 Msa0434090:CDS
TTGCTGAAATCCTCAAAGAT+AGG 0.468317 3_2:+86848436 Msa0434090:CDS
GATTCAACGAAGCTGTCAAC+GGG 0.469615 3_2:+86849485 Msa0434090:CDS
TTCATCACCTAGCAAGATGA+TGG 0.470764 3_2:+86849573 Msa0434090:CDS
GATGGGCTTCAAATGCAAAC+TGG 0.472343 3_2:-86851054 None:intergenic
GTTGGGTTGGATTTGGAAGA+AGG 0.472578 3_2:+86846576 Msa0434090:five_prime_UTR
CATCTTCCTCAGCTTTGTAG+TGG 0.473433 3_2:+86850672 Msa0434090:intron
GAGTTTCTATCAAAGGCTAC+TGG 0.476434 3_2:+86847662 Msa0434090:CDS
TTCTCATGGTTCCCCTGGAG+TGG 0.477241 3_2:+86848274 Msa0434090:CDS
CTCAGCCAAGTGTGACAGGA+TGG 0.477876 3_2:+86849325 Msa0434090:CDS
TGCACGTGCCTGCGGCCTCG+TGG 0.486826 3_2:+86848298 Msa0434090:CDS
TAGCCTGGTCCGGATTCCAT+TGG 0.487508 3_2:+86848239 Msa0434090:intron
TGGTATTTGTTTATCCAGCA+TGG 0.488354 3_2:+86851928 Msa0434090:CDS
GTTTCTCAGCCAAGTGTGAC+AGG 0.488578 3_2:+86849321 Msa0434090:CDS
GGTTCAATATGAGAGAGAAT+AGG 0.490102 3_2:-86846774 None:intergenic
CAGCCAAGTGTGACAGGATG+GGG 0.491303 3_2:+86849327 Msa0434090:CDS
GCTCTAACAAAATGCGGCAC+TGG 0.492687 3_2:-86848920 None:intergenic
AGGAAGCTTAAAAGAGATGT+TGG 0.492851 3_2:-86846460 None:intergenic
GGTCCAAATGCCCGGGATGA+AGG 0.494227 3_2:+86847700 Msa0434090:CDS
GCGGGAACACAGATCAGAAT+GGG 0.495304 3_2:+86850043 Msa0434090:CDS
GGTATTTGTTTATCCAGCAT+GGG 0.496206 3_2:+86851929 Msa0434090:CDS
CAATAGGAAGGAAGGAAGGA+AGG 0.497327 3_2:-86846480 None:intergenic
TTGTATTTGACTTACCCAGC+AGG 0.497760 3_2:-86847443 None:intergenic
TTTAGCAGAGTTTCTATCAA+AGG 0.497850 3_2:+86847655 Msa0434090:CDS
ATTCCAATGGAATCCGGACC+AGG 0.499148 3_2:-86848242 None:intergenic
CATTTAGAACATCCACAGTT+CGG 0.500936 3_2:-86848479 None:intergenic
TGCGGCACTGGAGGCATACT+AGG 0.502619 3_2:-86848908 None:intergenic
TGCGATATTATCTTGAAGAT+GGG 0.503723 3_2:-86851071 None:intergenic
AGTTATTGGCCTCCCCATGC+TGG 0.504544 3_2:-86851942 None:intergenic
TACTGGAACCGCTGTTGAGT+GGG 0.504776 3_2:+86847679 Msa0434090:CDS
GTTCTAAATGTTATGTCCAC+AGG 0.505259 3_2:+86848492 Msa0434090:CDS
GAGAAGCAGAGGAAAGAAGC+TGG 0.505430 3_2:+86846935 Msa0434090:CDS
AAGATGATGGGACTAAATCT+TGG 0.505856 3_2:+86849586 Msa0434090:CDS
GCAACGATTCCAATGGAATC+CGG 0.506436 3_2:-86848248 None:intergenic
TTTGGCACATAGCACAGAAC+TGG 0.509436 3_2:-86849635 None:intergenic
CTAAATCTTGGTTATAACAA+TGG 0.512081 3_2:+86849598 Msa0434090:CDS
GTGGGCATATGCACCACCTA+TGG 0.512529 3_2:+86852160 Msa0434090:three_prime_UTR
TAGATTAAAAGATAGGATGT+AGG 0.513948 3_2:+86852055 Msa0434090:three_prime_UTR
GGAACCACTGGAAACAAAGC+AGG 0.514125 3_2:+86850977 Msa0434090:CDS
TGTTGCCTGCGAAGAGAAGT+AGG 0.514330 3_2:-86846735 None:intergenic
GTGAGTTCAGGATGCAAAGA+TGG 0.514612 3_2:+86846621 Msa0434090:CDS
TCCTCAGCTTTGTAGTGGAG+TGG 0.515145 3_2:+86850677 Msa0434090:intron
CTGAAGCACAAACGCTTACT+CGG 0.516996 3_2:+86851209 Msa0434090:CDS
TCCTCAAAGATAGGCTCTCA+TGG 0.518370 3_2:+86848445 Msa0434090:CDS
TCGTGGGTCTTGAACCTGCA+AGG 0.518555 3_2:+86848315 Msa0434090:CDS
TCAGCAGCTGCCATTAAAGC+TGG 0.518942 3_2:+86850089 Msa0434090:CDS
GCAAGATCGAGTGTGCGGTT+AGG 0.519277 3_2:-86850938 None:intergenic
GGAATCGTTGCAATTTCTCA+TGG 0.524738 3_2:+86848260 Msa0434090:CDS
GTTTAAAGCTTGTTAAGAGA+GGG 0.525379 3_2:-86846535 None:intergenic
TTTAGTCCCATCATCTTGCT+AGG 0.525629 3_2:-86849580 None:intergenic
AACTCGTGTCCGTAGTGGCA+AGG 0.527560 3_2:-86847370 None:intergenic
CGCATCTGAGTGATGCCAAA+GGG 0.530194 3_2:-86851415 None:intergenic
CGATAACTATTATATTGCTG+TGG 0.530545 3_2:+86852141 Msa0434090:three_prime_UTR
GTTGTATGCGCCAACAACTC+TGG 0.530549 3_2:+86848671 Msa0434090:intron
TGCGGGAACACAGATCAGAA+TGG 0.530863 3_2:+86850042 Msa0434090:CDS
GAAAAGATATTTGATGACAA+TGG 0.533386 3_2:+86851659 Msa0434090:CDS
CTGGTCCATGTAGCTTGCCA+GGG 0.538428 3_2:+86850108 Msa0434090:CDS
AGGTAGCTTAATTAGGATGA+TGG 0.540548 3_2:+86846596 Msa0434090:exon
CTGCATGTAAAGCAATTCAA+TGG 0.540926 3_2:-86848526 None:intergenic
AGCAACCAGAAGTCGCGACC+TGG 0.542154 3_2:-86848696 None:intergenic
TCAGCCAAGTGTGACAGGAT+GGG 0.542398 3_2:+86849326 Msa0434090:CDS
TCAAGATAATATCGCAGCTA+TGG 0.544488 3_2:+86851078 Msa0434090:CDS
CAAGGGATGCAAGCCCTGCT+GGG 0.545537 3_2:+86847429 Msa0434090:CDS
TGATGTCTTGAAGTGCAACC+AGG 0.546715 3_2:-86851631 None:intergenic
TCACTTAACAACACACAGAA+TGG 0.547612 3_2:+86848884 Msa0434090:CDS
CTGATTAGACCCTGTGAAGG+AGG 0.548637 3_2:+86848965 Msa0434090:CDS
GTCAACGGGTTTACAGATGA+TGG 0.550490 3_2:+86849499 Msa0434090:CDS
TGATTAGACCCTGTGAAGGA+GGG 0.553128 3_2:+86848966 Msa0434090:CDS
TTCAAGACCCACGAGGCCGC+AGG 0.553773 3_2:-86848306 None:intergenic
CTAAGCGCACGTAAAGCTGC+AGG 0.555854 3_2:-86849357 None:intergenic
ACAGACGACCCTTGCCACTA+CGG 0.558722 3_2:+86847361 Msa0434090:intron
TGCTAAAGTCTCCTCTGCAA+TGG 0.562754 3_2:-86847639 None:intergenic
GTATTTGTTTATCCAGCATG+GGG 0.564375 3_2:+86851930 Msa0434090:CDS
GTCCTTGTAGAATGTCCCTC+CGG 0.565212 3_2:+86850001 Msa0434090:intron
AGCATGGATGACTCATAAAG+TGG 0.566145 3_2:-86849143 None:intergenic
AGGGATGATATGACAATGCC+TGG 0.566322 3_2:+86850378 Msa0434090:CDS
TTTGGAGGATGGCAGTCTTG+TGG 0.566818 3_2:+86848734 Msa0434090:CDS
AGGGTAATTAACCTTCATCC+CGG 0.569520 3_2:-86847711 None:intergenic
GATAACTATTATATTGCTGT+GGG 0.569712 3_2:+86852142 Msa0434090:three_prime_UTR
AAGTTTGGTTCCAGAACAGA+AGG 0.569991 3_2:+86846808 Msa0434090:CDS
TCTGAGAACCAAAACGCGAA+GGG 0.570540 3_2:-86851159 None:intergenic
TGTGCAATAGGAAGGAAGGA+AGG 0.570640 3_2:-86846484 None:intergenic
AATGGTTCCTCCATTTCCTG+TGG 0.571463 3_2:-86848508 None:intergenic
TGTATTTGACTTACCCAGCA+GGG 0.572571 3_2:-86847442 None:intergenic
GATTAGACCCTGTGAAGGAG+GGG 0.573104 3_2:+86848967 Msa0434090:CDS
AGCACAGAACTGGTGACAGA+TGG 0.574046 3_2:-86849625 None:intergenic
AGAAATTGCAACGATTCCAA+TGG 0.574191 3_2:-86848255 None:intergenic
ACTCGTGTCCGTAGTGGCAA+GGG 0.576336 3_2:-86847369 None:intergenic
CAAAACCTACTTCTCTTCGC+AGG 0.577384 3_2:+86846730 Msa0434090:CDS
GCAGGTGCAGAGAGAAGCAG+AGG 0.578902 3_2:+86846924 Msa0434090:intron
AAAACTTCAGGCACACTCCA+AGG 0.579548 3_2:-86849116 None:intergenic
GGTTTAAAGCTTGTTAAGAG+AGG 0.581152 3_2:-86846536 None:intergenic
TGTGTGTGCAATAGGAAGGA+AGG 0.582207 3_2:-86846488 None:intergenic
GCAGAACTACTTAAGTGTGA+AGG 0.583973 3_2:+86851372 Msa0434090:CDS
AGGCACGTGCAGCCACTCCA+GGG 0.585841 3_2:-86848286 None:intergenic
CTACTGGAACCGCTGTTGAG+TGG 0.586215 3_2:+86847678 Msa0434090:CDS
TTCTGAGAACCAAAACGCGA+AGG 0.588476 3_2:-86851160 None:intergenic
AAGGTACACACCAGAGCAAG+TGG 0.590467 3_2:+86846677 Msa0434090:CDS
CTAACAAAATGCGGCACTGG+AGG 0.590611 3_2:-86848917 None:intergenic
ATTGTGTGTGTGCAATAGGA+AGG 0.591816 3_2:-86846492 None:intergenic
TGGTCTATGTTAGATAGTGA+TGG 0.594042 3_2:+86849523 Msa0434090:CDS
GTGTGACAGGATGGGGAAGG+CGG 0.594930 3_2:+86849334 Msa0434090:CDS
TGGACAATGGAAAGTACGTA+AGG 0.595746 3_2:+86846658 Msa0434090:CDS
TGGTCCATGTAGCTTGCCAG+GGG 0.596219 3_2:+86850109 Msa0434090:CDS
CTTATGAGAGAGCTGTAGCA+TGG 0.596800 3_2:+86851963 Msa0434090:CDS
GCGCCAACAACTCTGGCACC+AGG 0.600039 3_2:+86848678 Msa0434090:CDS
CGTGGGTCTTGAACCTGCAA+GGG 0.600458 3_2:+86848316 Msa0434090:CDS
TTGAGTGGGTCCAAATGCCC+GGG 0.600560 3_2:+86847693 Msa0434090:CDS
GGATTCAACGAAGCTGTCAA+CGG 0.601339 3_2:+86849484 Msa0434090:CDS
GGGTAATTAACCTTCATCCC+GGG 0.604192 3_2:-86847710 None:intergenic
CAGAACTACTTAAGTGTGAA+GGG 0.605820 3_2:+86851373 Msa0434090:CDS
TCATCACCTAGCAAGATGAT+GGG 0.607665 3_2:+86849574 Msa0434090:CDS
TTTGTTTATCCAGCATGGGG+AGG 0.608499 3_2:+86851933 Msa0434090:CDS
GTTATGTCCACAGGAAATGG+AGG 0.608625 3_2:+86848501 Msa0434090:CDS
GCATGGATGACTCATAAAGT+GGG 0.609344 3_2:-86849142 None:intergenic
AGCAAGATAGCAATGGACAA+TGG 0.610868 3_2:+86846645 Msa0434090:CDS
AGCAGAGGAAAGAAGCTGGA+AGG 0.615005 3_2:+86846939 Msa0434090:CDS
GGAGTGGCTGCACGTGCCTG+CGG 0.616801 3_2:+86848290 Msa0434090:CDS
ATTAGACCCTGTGAAGGAGG+GGG 0.617333 3_2:+86848968 Msa0434090:CDS
GGAGTGGACGAGCATGCAGT+TGG 0.618690 3_2:+86850693 Msa0434090:CDS
AGATGGTAGCAAGATAGCAA+TGG 0.621096 3_2:+86846638 Msa0434090:CDS
AGGTGATGAATTCACAAGAA+GGG 0.622669 3_2:-86849560 None:intergenic
CATACCTCTTGAATCTAGCA+CGG 0.625244 3_2:+86850797 Msa0434090:CDS
CTCACAACTCGTGTCCGTAG+TGG 0.627252 3_2:-86847375 None:intergenic
CGGTCAGCAGCATCCACCAA+GGG 0.631326 3_2:+86847412 Msa0434090:CDS
TAGGTGATGAATTCACAAGA+AGG 0.633200 3_2:-86849561 None:intergenic
GGCACGTGCAGCCACTCCAG+GGG 0.635325 3_2:-86848285 None:intergenic
AATGAACAAACTGCTTATGG+AGG 0.636215 3_2:+86846991 Msa0434090:CDS
ATCTAAGAAGAATAGCCGGA+GGG 0.640469 3_2:-86850016 None:intergenic
CCGCATCTGAGTGATGCCAA+AGG 0.646305 3_2:-86851416 None:intergenic
ACGGGTTTACAGATGATGGA+TGG 0.646531 3_2:+86849503 Msa0434090:CDS
CTGAGAACCAAAACGCGAAG+GGG 0.646857 3_2:-86851158 None:intergenic
TGTTCTCTGAGCAAGCAGCA+TGG 0.647938 3_2:-86849159 None:intergenic
ATACCTGCTGCATTATCTGG+GGG 0.648878 3_2:-86851706 None:intergenic
AAAAGAAATGAGTCCATAGG+TGG 0.649262 3_2:-86852173 None:intergenic
GTTATCAAGCTTGAGAACAT+GGG 0.649916 3_2:+86850348 Msa0434090:CDS
TATACCTGCTGCATTATCTG+GGG 0.653102 3_2:-86851707 None:intergenic
CAAGTGTGACAGGATGGGGA+AGG 0.654511 3_2:+86849331 Msa0434090:CDS
TGTAAGAGGAAAATATCACC+AGG 0.656562 3_2:-86850396 None:intergenic
CTTGCCGTGCTAGATTCAAG+AGG 0.658066 3_2:-86850801 None:intergenic
ACTTCAGCTCTAACAAAATG+CGG 0.660310 3_2:-86848926 None:intergenic
GGACACGAGTTGTGAGTCAG+TGG 0.661062 3_2:+86847382 Msa0434090:CDS
GATGTCTTGAAGTGCAACCA+GGG 0.661753 3_2:-86851630 None:intergenic
GAACCACTGGAAACAAAGCA+GGG 0.663545 3_2:+86850978 Msa0434090:CDS
GCGGTCAGCAGCATCCACCA+AGG 0.664352 3_2:+86847411 Msa0434090:CDS
GGTATGATACGAAAACCAGA+AGG 0.665928 3_2:-86850780 None:intergenic
GGTCTAATCAGATAACCGCT+AGG 0.667041 3_2:-86848953 None:intergenic
AATCTAAGAAGAATAGCCGG+AGG 0.667152 3_2:-86850017 None:intergenic
CCTTTGGCATCACTCAGATG+CGG 0.670379 3_2:+86851416 Msa0434090:CDS
TTCTGTAATACAGTTCATGG+AGG 0.670808 3_2:+86850326 Msa0434090:intron
TATCTGATTAGACCCTGTGA+AGG 0.676545 3_2:+86848962 Msa0434090:CDS
GAATTATACCTGTAACAACA+TGG 0.676552 3_2:-86849662 None:intergenic
TGTGAGTCAGTGGTAACAAG+CGG 0.679277 3_2:+86847392 Msa0434090:CDS
AAGCACAAACGCTTACTCGG+TGG 0.679968 3_2:+86851212 Msa0434090:CDS
CAGAAGCAAGATCGAGTGTG+CGG 0.682497 3_2:-86850943 None:intergenic
GTATCGTGATTGCCGAACTG+TGG 0.685847 3_2:+86848467 Msa0434090:CDS
AAAACGTGTTCTCATACACA+AGG 0.688378 3_2:-86847045 None:intergenic
ACCACTGGAAACAAAGCAGG+GGG 0.697026 3_2:+86850980 Msa0434090:CDS
TGTGCTTCAGGAGTTCCAGG+TGG 0.700188 3_2:-86851196 None:intergenic
CATTTGGACCCACTCAACAG+CGG 0.704277 3_2:-86847687 None:intergenic
TGACATGCTTGAAACCACCC+TGG 0.704585 3_2:+86851613 Msa0434090:CDS
GGTTTCATGTGTATTCAAGG+TGG 0.704702 3_2:+86851908 Msa0434090:CDS
AACCACTGGAAACAAAGCAG+GGG 0.710996 3_2:+86850979 Msa0434090:CDS
AGAGCTGAAGTGTTGCCTAG+CGG 0.716290 3_2:+86848938 Msa0434090:CDS
GTCTTGAAGTGCAACCAGGG+TGG 0.726402 3_2:-86851627 None:intergenic
TTGCAGGTTCAAGACCCACG+AGG 0.774422 3_2:-86848313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATTAATAATGAAG+AGG - chr3_2:86848356-86848375 None:intergenic 10.0%
!!! TTTTAACAATATCAATATTT+AGG + chr3_2:86848850-86848869 Msa0434090:intron 10.0%
!!! TATTTTATAGAATAAGTAAA+AGG - chr3_2:86849044-86849063 None:intergenic 10.0%
!! TTATAGATCATTATACTATA+CGG - chr3_2:86846410-86846429 None:intergenic 15.0%
!! TATTTGGCAAATTAATTAAA+AGG + chr3_2:86846837-86846856 Msa0434090:intron 15.0%
!! ATTTGGCAAATTAATTAAAA+GGG + chr3_2:86846838-86846857 Msa0434090:intron 15.0%
!! TTAATGAATTAATGAAAGTT+TGG + chr3_2:86846884-86846903 Msa0434090:intron 15.0%
!!! TTAAAATAATGATTTTAGCT+AGG - chr3_2:86847243-86847262 None:intergenic 15.0%
!!! TAGCTAAAATCATTATTTTA+AGG + chr3_2:86847242-86847261 Msa0434090:intron 15.0%
!! TAATGGAATACTATTATTTA+TGG + chr3_2:86847579-86847598 Msa0434090:intron 15.0%
!! AAAAATAGTGAATGTTATTA+AGG - chr3_2:86847872-86847891 None:intergenic 15.0%
!! ATATAATATATAGTACTCAA+GGG - chr3_2:86849763-86849782 None:intergenic 15.0%
!! AATATAATATATAGTACTCA+AGG - chr3_2:86849764-86849783 None:intergenic 15.0%
!!! TATTTTTTCTGATAAGAATT+TGG + chr3_2:86851475-86851494 Msa0434090:intron 15.0%
!!! TAACGATATATGAAATATTT+TGG + chr3_2:86851880-86851899 Msa0434090:intron 15.0%
!!! AAAGAAGATTATTTTGAGTT+GGG + chr3_2:86846559-86846578 Msa0434090:five_prime_UTR 20.0%
!!! TAATTACATTTTGTGTATGT+TGG - chr3_2:86847075-86847094 None:intergenic 20.0%
!! ATGATCATAAAAGAAATGTT+AGG + chr3_2:86847186-86847205 Msa0434090:intron 20.0%
!! AGTAAAATAGCAAAATACAA+GGG - chr3_2:86847470-86847489 None:intergenic 20.0%
!! TAGTAAAATAGCAAAATACA+AGG - chr3_2:86847471-86847490 None:intergenic 20.0%
!! AGTATAGTACTATAGTTATA+TGG - chr3_2:86847507-86847526 None:intergenic 20.0%
!! ATATAACTATAGTACTATAC+TGG + chr3_2:86847506-86847525 Msa0434090:intron 20.0%
!! AAAGAAAGTAAAAGAAAGTA+GGG - chr3_2:86847733-86847752 None:intergenic 20.0%
!! TAAAGAAAGTAAAAGAAAGT+AGG - chr3_2:86847734-86847753 None:intergenic 20.0%
!! AATTAAGAAGGTGAAATAAA+AGG - chr3_2:86847757-86847776 None:intergenic 20.0%
!! ATAAAGGGAATAAATTAAGA+AGG - chr3_2:86847769-86847788 None:intergenic 20.0%
!! TACTATGTAATGCAAATAAA+GGG - chr3_2:86847784-86847803 None:intergenic 20.0%
!! ATCTCATTAGTGTTAATTAA+AGG + chr3_2:86847912-86847931 Msa0434090:intron 20.0%
!!! ATTGAAAGATTCTTTCATTT+TGG + chr3_2:86847972-86847991 Msa0434090:intron 20.0%
!!! TTGAAAGATTCTTTCATTTT+GGG + chr3_2:86847973-86847992 Msa0434090:intron 20.0%
!! ATAAAGGTAAAAAATCAATC+AGG - chr3_2:86848048-86848067 None:intergenic 20.0%
!! AAGAAAAATTACATCACATA+AGG - chr3_2:86848079-86848098 None:intergenic 20.0%
!!! AAAAGAAAATATAAGAGTGT+TGG - chr3_2:86848162-86848181 None:intergenic 20.0%
!! AACATTTACATCACATAATT+AGG - chr3_2:86848185-86848204 None:intergenic 20.0%
!! TAAATTAATAATGAAGAGGA+AGG - chr3_2:86848352-86848371 None:intergenic 20.0%
!! ATGATCAACAATATGAATTA+TGG - chr3_2:86848996-86849015 None:intergenic 20.0%
!! AACTGAAAGTTAAGTAAATA+TGG - chr3_2:86849069-86849088 None:intergenic 20.0%
!! TTTACCTTCAAATCTATATA+TGG - chr3_2:86849217-86849236 None:intergenic 20.0%
!!! TTACTTCCTTTTTATTTTAC+AGG + chr3_2:86849461-86849480 Msa0434090:intron 20.0%
!!! TACTTCCTTTTTATTTTACA+GGG + chr3_2:86849462-86849481 Msa0434090:intron 20.0%
!! AAATACATGTAGTAAATGTT+TGG - chr3_2:86849951-86849970 None:intergenic 20.0%
!!! AATTTAAATATGATTTTGGC+AGG + chr3_2:86851553-86851572 Msa0434090:intron 20.0%
!! AATACCATAGATAAGATTAA+AGG - chr3_2:86852101-86852120 None:intergenic 20.0%
!! TTAATCTTATCTATGGTATT+TGG + chr3_2:86852101-86852120 Msa0434090:three_prime_UTR 20.0%
! CAACTCAAAATAATCTTCTT+TGG - chr3_2:86846560-86846579 None:intergenic 25.0%
!!! CAAAGAAGATTATTTTGAGT+TGG + chr3_2:86846558-86846577 Msa0434090:five_prime_UTR 25.0%
! AATAAATATACCTTCTGTTC+TGG - chr3_2:86846821-86846840 None:intergenic 25.0%
!! GAACAGAAGGTATATTTATT+TGG + chr3_2:86846821-86846840 Msa0434090:intron 25.0%
!!! GTGTTGTTTATTAATTTTGC+AGG + chr3_2:86846906-86846925 Msa0434090:intron 25.0%
! GTACTATGTAATGCAAATAA+AGG - chr3_2:86847785-86847804 None:intergenic 25.0%
!! AGTAAAAAAAGAAGTTGGTT+TGG - chr3_2:86847836-86847855 None:intergenic 25.0%
!! GAATGTTATTAAGGTTTGTT+TGG - chr3_2:86847863-86847882 None:intergenic 25.0%
!!! TTCACTATTTTTAACTGCAT+TGG + chr3_2:86847880-86847899 Msa0434090:intron 25.0%
!!! TATTTTTAACTGCATTGGTA+TGG + chr3_2:86847885-86847904 Msa0434090:intron 25.0%
!!! AATTTTTTCGTCAACTAAGT+CGG + chr3_2:86847999-86848018 Msa0434090:intron 25.0%
! ATTACATCACATAAGGAAAA+GGG - chr3_2:86848072-86848091 None:intergenic 25.0%
! AATTACATCACATAAGGAAA+AGG - chr3_2:86848073-86848092 None:intergenic 25.0%
! TTCACTCAATGCATATTAAT+GGG - chr3_2:86848389-86848408 None:intergenic 25.0%
! TCTTAGTCACAATAATAACT+TGG + chr3_2:86848587-86848606 Msa0434090:intron 25.0%
! TTCAAATCTATATATGGCAA+TGG - chr3_2:86849211-86849230 None:intergenic 25.0%
! ATTGCCATATATAGATTTGA+AGG + chr3_2:86849210-86849229 Msa0434090:intron 25.0%
!!! ACTTCCTTTTTATTTTACAG+GGG + chr3_2:86849463-86849482 Msa0434090:intron 25.0%
! CTAAATCTTGGTTATAACAA+TGG + chr3_2:86849598-86849617 Msa0434090:CDS 25.0%
!! TTAAGTTTTACTAGTGTGTT+TGG + chr3_2:86849782-86849801 Msa0434090:intron 25.0%
! TTGGAATAGTACTAAGTTAT+TGG + chr3_2:86849801-86849820 Msa0434090:intron 25.0%
!! TGATTTTACTGATGTCAAAA+TGG - chr3_2:86849896-86849915 None:intergenic 25.0%
! AAAAATCTAAGAAGAATAGC+CGG - chr3_2:86850023-86850042 None:intergenic 25.0%
!! CTATTCTTCTTAGATTTTTG+CGG + chr3_2:86850024-86850043 Msa0434090:CDS 25.0%
!! TATTCTTCTTAGATTTTTGC+GGG + chr3_2:86850025-86850044 Msa0434090:CDS 25.0%
! ATGTAAGAGATAACAAAATC+AGG - chr3_2:86850214-86850233 None:intergenic 25.0%
! CTAAAATACTTACTTGTAAG+AGG - chr3_2:86850413-86850432 None:intergenic 25.0%
! AATAGATATGTTCAAGAGAA+TGG - chr3_2:86850440-86850459 None:intergenic 25.0%
! ATGATGATCTTAATCATGTT+CGG + chr3_2:86851312-86851331 Msa0434090:intron 25.0%
!! TTTTCTGATAAGAATTTGGT+TGG + chr3_2:86851479-86851498 Msa0434090:intron 25.0%
!! GTCATCAAATATCTTTTCTA+GGG - chr3_2:86851657-86851676 None:intergenic 25.0%
!! TGTCATCAAATATCTTTTCT+AGG - chr3_2:86851658-86851677 None:intergenic 25.0%
!! GAAAAGATATTTGATGACAA+TGG + chr3_2:86851659-86851678 Msa0434090:CDS 25.0%
!! AAAGAGTATGTTGATGTTAA+CGG + chr3_2:86851749-86851768 Msa0434090:intron 25.0%
!!! TATATGAAATATTTTGGTGC+AGG + chr3_2:86851886-86851905 Msa0434090:intron 25.0%
!!! ATATGAAATATTTTGGTGCA+GGG + chr3_2:86851887-86851906 Msa0434090:intron 25.0%
! TGTCTAGTAGATTAAAAGAT+AGG + chr3_2:86852048-86852067 Msa0434090:exon 25.0%
! TAGATTAAAAGATAGGATGT+AGG + chr3_2:86852055-86852074 Msa0434090:three_prime_UTR 25.0%
! CTAACCTTTAATCTTATCTA+TGG + chr3_2:86852094-86852113 Msa0434090:three_prime_UTR 25.0%
! GATAACTATTATATTGCTGT+GGG + chr3_2:86852142-86852161 Msa0434090:three_prime_UTR 25.0%
!! GTTTAAAGCTTGTTAAGAGA+GGG - chr3_2:86846538-86846557 None:intergenic 30.0%
!!! AAGATTATTTTGAGTTGGGT+TGG + chr3_2:86846563-86846582 Msa0434090:five_prime_UTR 30.0%
AACCTAAACAGATCAAAGTT+TGG + chr3_2:86846793-86846812 Msa0434090:CDS 30.0%
AACCAAACTTTGATCTGTTT+AGG - chr3_2:86846798-86846817 None:intergenic 30.0%
! TTACATTTTGTGTATGTTGG+CGG - chr3_2:86847072-86847091 None:intergenic 30.0%
GCTATAGAAAGAAGAATATG+AGG - chr3_2:86847099-86847118 None:intergenic 30.0%
!! TAAATTTTGCCATTTGAGTC+TGG + chr3_2:86847209-86847228 Msa0434090:intron 30.0%
TTTAGCAGAGTTTCTATCAA+AGG + chr3_2:86847655-86847674 Msa0434090:CDS 30.0%
GACTTAGTTGACGAAAAAAT+TGG - chr3_2:86848000-86848019 None:intergenic 30.0%
! ACATAAGGAAAAGGGTATAA+AGG - chr3_2:86848064-86848083 None:intergenic 30.0%
! ATCCTTATACTCAAGACTTT+TGG + chr3_2:86848120-86848139 Msa0434090:intron 30.0%
GTTCACTCAATGCATATTAA+TGG - chr3_2:86848390-86848409 None:intergenic 30.0%
AAATTTGTGATGTCCTTTAC+AGG + chr3_2:86848413-86848432 Msa0434090:intron 30.0%
CATGTTAGATTTCGTTAATG+TGG - chr3_2:86848635-86848654 None:intergenic 30.0%
TACATGTTTATGCACCTATA+TGG + chr3_2:86848772-86848791 Msa0434090:intron 30.0%
TGTTAAACATGCAACCATAT+AGG - chr3_2:86848789-86848808 None:intergenic 30.0%
!! AATATCAGAGTTTGAGTTGA+AGG - chr3_2:86848821-86848840 None:intergenic 30.0%
! TGTTGATCATATGCTTTTAG+AGG + chr3_2:86849006-86849025 Msa0434090:CDS 30.0%
AGATTTGAAGGTAAACATGT+TGG + chr3_2:86849222-86849241 Msa0434090:intron 30.0%
TTTAGGCTTTACGTCATTTA+AGG + chr3_2:86849283-86849302 Msa0434090:intron 30.0%
AATGCAATTGTGAAGGAAAA+TGG - chr3_2:86849405-86849424 None:intergenic 30.0%
TAGTAACAATGCAATTGTGA+AGG - chr3_2:86849412-86849431 None:intergenic 30.0%
GAATCCCCTGTAAAATAAAA+AGG - chr3_2:86849470-86849489 None:intergenic 30.0%
GAATTATACCTGTAACAACA+TGG - chr3_2:86849665-86849684 None:intergenic 30.0%
TTCTTAGTACTCACTACTTA+TGG + chr3_2:86849692-86849711 Msa0434090:intron 30.0%
ATATATAGTACTCAAGGGAA+AGG - chr3_2:86849758-86849777 None:intergenic 30.0%
TACTAAGTTATTGGTGTGTT+TGG + chr3_2:86849810-86849829 Msa0434090:intron 30.0%
! ACAAAATAATAGCTTGTGGT+TGG - chr3_2:86849866-86849885 None:intergenic 30.0%
AGCTACAAAATAATAGCTTG+TGG - chr3_2:86849870-86849889 None:intergenic 30.0%
TTGACATCAGTAAAATCACT+TGG + chr3_2:86849898-86849917 Msa0434090:intron 30.0%
! TCAAACATGTTTTTCGTCTT+TGG + chr3_2:86850278-86850297 Msa0434090:intron 30.0%
! GTTTTCTGTAATACAGTTCA+TGG + chr3_2:86850323-86850342 Msa0434090:intron 30.0%
CTCTCAATTGCAATTATAGA+AGG - chr3_2:86850510-86850529 None:intergenic 30.0%
CTGATTATAGAAGATGCTTT+CGG + chr3_2:86850615-86850634 Msa0434090:intron 30.0%
TGCGATATTATCTTGAAGAT+GGG - chr3_2:86851074-86851093 None:intergenic 30.0%
TGATGATCTTAATCATGTTC+GGG + chr3_2:86851313-86851332 Msa0434090:intron 30.0%
AATCGATACTTAAATCCCTT+TGG + chr3_2:86851400-86851419 Msa0434090:CDS 30.0%
! TTGATTCGCAAACGTAAAAA+CGG - chr3_2:86851585-86851604 None:intergenic 30.0%
! AAGAGTATGTTGATGTTAAC+GGG + chr3_2:86851750-86851769 Msa0434090:intron 30.0%
TCTGTTTCATGTTCATCAAT+TGG + chr3_2:86852020-86852039 Msa0434090:CDS 30.0%
CGATAACTATTATATTGCTG+TGG + chr3_2:86852141-86852160 Msa0434090:three_prime_UTR 30.0%
CTAAAAAGAAATGAGTCCAT+AGG - chr3_2:86852179-86852198 None:intergenic 30.0%
AGTTTGTCTGTGACAATTGT+TGG - chr3_2:86846436-86846455 None:intergenic 35.0%
AGGAAGCTTAAAAGAGATGT+TGG - chr3_2:86846463-86846482 None:intergenic 35.0%
GAATATTGTGTGTGTGCAAT+AGG - chr3_2:86846499-86846518 None:intergenic 35.0%
!! GGTTTAAAGCTTGTTAAGAG+AGG - chr3_2:86846539-86846558 None:intergenic 35.0%
!!! ATTTTGAGTTGGGTTGGATT+TGG + chr3_2:86846569-86846588 Msa0434090:five_prime_UTR 35.0%
TGGAAGAAGGTAGCTTAATT+AGG + chr3_2:86846589-86846608 Msa0434090:five_prime_UTR 35.0%
AGGTAGCTTAATTAGGATGA+TGG + chr3_2:86846596-86846615 Msa0434090:exon 35.0%
!!! AAGTAGGTTTTGGACATTCA+TGG - chr3_2:86846722-86846741 None:intergenic 35.0%
GGTTCAATATGAGAGAGAAT+AGG - chr3_2:86846777-86846796 None:intergenic 35.0%
AGCAATGAACAAACTGCTTA+TGG + chr3_2:86846988-86847007 Msa0434090:CDS 35.0%
AATGAACAAACTGCTTATGG+AGG + chr3_2:86846991-86847010 Msa0434090:CDS 35.0%
AAAACGTGTTCTCATACACA+AGG - chr3_2:86847048-86847067 None:intergenic 35.0%
TACTATCCAACGACATACAT+TGG - chr3_2:86847561-86847580 None:intergenic 35.0%
TGTATGTCGTTGGATAGTAA+TGG + chr3_2:86847562-86847581 Msa0434090:intron 35.0%
GCAGCAGTAAAAAAAGAAGT+TGG - chr3_2:86847841-86847860 None:intergenic 35.0%
AGAAATTGCAACGATTCCAA+TGG - chr3_2:86848258-86848277 None:intergenic 35.0%
TTGCTGAAATCCTCAAAGAT+AGG + chr3_2:86848436-86848455 Msa0434090:CDS 35.0%
! CATTTAGAACATCCACAGTT+CGG - chr3_2:86848482-86848501 None:intergenic 35.0%
! GTTCTAAATGTTATGTCCAC+AGG + chr3_2:86848492-86848511 Msa0434090:CDS 35.0%
AATGTTATGTCCACAGGAAA+TGG + chr3_2:86848498-86848517 Msa0434090:CDS 35.0%
CTGCATGTAAAGCAATTCAA+TGG - chr3_2:86848529-86848548 None:intergenic 35.0%
CATTGAATTGCTTTACATGC+AGG + chr3_2:86848527-86848546 Msa0434090:CDS 35.0%
!! GAGTTTGAGTTGAAGGATAT+AGG - chr3_2:86848814-86848833 None:intergenic 35.0%
TCACTTAACAACACACAGAA+TGG + chr3_2:86848884-86848903 Msa0434090:CDS 35.0%
! ACTTCAGCTCTAACAAAATG+CGG - chr3_2:86848929-86848948 None:intergenic 35.0%
!! TGATTCTTTGAAATCAGCCT+TGG + chr3_2:86849099-86849118 Msa0434090:intron 35.0%
TGGTCTATGTTAGATAGTGA+TGG + chr3_2:86849523-86849542 Msa0434090:CDS 35.0%
AGGTGATGAATTCACAAGAA+GGG - chr3_2:86849563-86849582 None:intergenic 35.0%
TAGGTGATGAATTCACAAGA+AGG - chr3_2:86849564-86849583 None:intergenic 35.0%
!! AAGATGATGGGACTAAATCT+TGG + chr3_2:86849586-86849605 Msa0434090:CDS 35.0%
ACCAAATGACTTCTGATACT+CGG + chr3_2:86849840-86849859 Msa0434090:intron 35.0%
ACTGTATTACAGAAAACCAC+TGG - chr3_2:86850320-86850339 None:intergenic 35.0%
TTCTGTAATACAGTTCATGG+AGG + chr3_2:86850326-86850345 Msa0434090:intron 35.0%
GTTATCAAGCTTGAGAACAT+GGG + chr3_2:86850348-86850367 Msa0434090:CDS 35.0%
TGTAAGAGGAAAATATCACC+AGG - chr3_2:86850399-86850418 None:intergenic 35.0%
TTGAGAGAAAACACTTCCAT+TGG + chr3_2:86850523-86850542 Msa0434090:intron 35.0%
TAGTACTAGTGCATTTCCAA+TGG - chr3_2:86850542-86850561 None:intergenic 35.0%
AATAGTTAGCTATGCACATG+AGG - chr3_2:86850642-86850661 None:intergenic 35.0%
TCAGAGAAAGATGCATCAAT+TGG - chr3_2:86850744-86850763 None:intergenic 35.0%
CTGCGATATTATCTTGAAGA+TGG - chr3_2:86851075-86851094 None:intergenic 35.0%
TCAAGATAATATCGCAGCTA+TGG + chr3_2:86851078-86851097 Msa0434090:CDS 35.0%
TGCTGTTATGCATAGTGAAA+TGG - chr3_2:86851276-86851295 None:intergenic 35.0%
CAGAACTACTTAAGTGTGAA+GGG + chr3_2:86851373-86851392 Msa0434090:CDS 35.0%
TGATTCGCAAACGTAAAAAC+GGG - chr3_2:86851584-86851603 None:intergenic 35.0%
! ATGTTGATGTTAACGGGTAT+TGG + chr3_2:86851756-86851775 Msa0434090:intron 35.0%
! TGTTGATGTTAACGGGTATT+GGG + chr3_2:86851757-86851776 Msa0434090:intron 35.0%
AAAATGTATGCGACGAAGTT+TGG + chr3_2:86851806-86851825 Msa0434090:intron 35.0%
TGGTATTTGTTTATCCAGCA+TGG + chr3_2:86851928-86851947 Msa0434090:CDS 35.0%
GGTATTTGTTTATCCAGCAT+GGG + chr3_2:86851929-86851948 Msa0434090:CDS 35.0%
GTATTTGTTTATCCAGCATG+GGG + chr3_2:86851930-86851949 Msa0434090:CDS 35.0%
ACAGCTCTCTCATAAGTTAT+TGG - chr3_2:86851959-86851978 None:intergenic 35.0%
AAAAGAAATGAGTCCATAGG+TGG - chr3_2:86852176-86852195 None:intergenic 35.0%
ATTGTGTGTGTGCAATAGGA+AGG - chr3_2:86846495-86846514 None:intergenic 40.0%
AGATGGTAGCAAGATAGCAA+TGG + chr3_2:86846638-86846657 Msa0434090:CDS 40.0%
AGCAAGATAGCAATGGACAA+TGG + chr3_2:86846645-86846664 Msa0434090:CDS 40.0%
! TGGACAATGGAAAGTACGTA+AGG + chr3_2:86846658-86846677 Msa0434090:CDS 40.0%
! AAGTTTGGTTCCAGAACAGA+AGG + chr3_2:86846808-86846827 Msa0434090:CDS 40.0%
! ACTTTGATGATCTCAGCTCA+AGG - chr3_2:86847153-86847172 None:intergenic 40.0%
GAGCTGAGATCATCAAAGTT+AGG + chr3_2:86847154-86847173 Msa0434090:intron 40.0%
! TGTATTTGACTTACCCAGCA+GGG - chr3_2:86847445-86847464 None:intergenic 40.0%
! TTGTATTTGACTTACCCAGC+AGG - chr3_2:86847446-86847465 None:intergenic 40.0%
ACTGATCCAATGTATGTCGT+TGG + chr3_2:86847552-86847571 Msa0434090:intron 40.0%
GAGTTTCTATCAAAGGCTAC+TGG + chr3_2:86847662-86847681 Msa0434090:CDS 40.0%
AGGGTAATTAACCTTCATCC+CGG - chr3_2:86847714-86847733 None:intergenic 40.0%
GGCCAAAAGTCTTGAGTATA+AGG - chr3_2:86848125-86848144 None:intergenic 40.0%
! ATACTCAAGACTTTTGGCCA+AGG + chr3_2:86848126-86848145 Msa0434090:intron 40.0%
!! GTGTTGGTTTATGTAGTCCT+TGG - chr3_2:86848146-86848165 None:intergenic 40.0%
! GTGATGAATGTTTTGTAGCC+TGG + chr3_2:86848224-86848243 Msa0434090:intron 40.0%
GGAATCGTTGCAATTTCTCA+TGG + chr3_2:86848260-86848279 Msa0434090:CDS 40.0%
AGGAAGTTAATTACCCTTGC+AGG - chr3_2:86848332-86848351 None:intergenic 40.0%
AGGATTTCAGCAACCTGTAA+AGG - chr3_2:86848429-86848448 None:intergenic 40.0%
!! TACACATCACTTTTGGAGGA+TGG + chr3_2:86848723-86848742 Msa0434090:CDS 40.0%
TATCTGATTAGACCCTGTGA+AGG + chr3_2:86848962-86848981 Msa0434090:CDS 40.0%
GCATGGATGACTCATAAAGT+GGG - chr3_2:86849145-86849164 None:intergenic 40.0%
AGCATGGATGACTCATAAAG+TGG - chr3_2:86849146-86849165 None:intergenic 40.0%
! TAACCCTGCAATTGTCGTTT+AGG + chr3_2:86849266-86849285 Msa0434090:intron 40.0%
AAGCCTAAACGACAATTGCA+GGG - chr3_2:86849272-86849291 None:intergenic 40.0%
AAAGCCTAAACGACAATTGC+AGG - chr3_2:86849273-86849292 None:intergenic 40.0%
TTCATCACCTAGCAAGATGA+TGG + chr3_2:86849573-86849592 Msa0434090:CDS 40.0%
TCATCACCTAGCAAGATGAT+GGG + chr3_2:86849574-86849593 Msa0434090:CDS 40.0%
TTTAGTCCCATCATCTTGCT+AGG - chr3_2:86849583-86849602 None:intergenic 40.0%
CTGTAACAACATGGAAGCTT+TGG - chr3_2:86849656-86849675 None:intergenic 40.0%
CAAAGCTTCCATGTTGTTAC+AGG + chr3_2:86849654-86849673 Msa0434090:CDS 40.0%
! TATCAGAAGTCATTTGGTGG+TGG - chr3_2:86849838-86849857 None:intergenic 40.0%
GAGTATCAGAAGTCATTTGG+TGG - chr3_2:86849841-86849860 None:intergenic 40.0%
ATCTAAGAAGAATAGCCGGA+GGG - chr3_2:86850019-86850038 None:intergenic 40.0%
AATCTAAGAAGAATAGCCGG+AGG - chr3_2:86850020-86850039 None:intergenic 40.0%
CTTGTAGACTAACAAACCAG+TGG + chr3_2:86850301-86850320 Msa0434090:intron 40.0%
GGTTATCAAGCTTGAGAACA+TGG + chr3_2:86850347-86850366 Msa0434090:CDS 40.0%
! TTGAGAACATGGGCTACTAT+AGG + chr3_2:86850358-86850377 Msa0434090:CDS 40.0%
! TGAGAACATGGGCTACTATA+GGG + chr3_2:86850359-86850378 Msa0434090:CDS 40.0%
CGAAAACCAGAAGGCAAAAT+GGG - chr3_2:86850774-86850793 None:intergenic 40.0%
ACGAAAACCAGAAGGCAAAA+TGG - chr3_2:86850775-86850794 None:intergenic 40.0%
GGTATGATACGAAAACCAGA+AGG - chr3_2:86850783-86850802 None:intergenic 40.0%
CATACCTCTTGAATCTAGCA+CGG + chr3_2:86850797-86850816 Msa0434090:CDS 40.0%
GAAATTCTTCCGCTTCTTGT+TGG + chr3_2:86850864-86850883 Msa0434090:intron 40.0%
ATCATCACTCCAACAAGAAG+CGG - chr3_2:86850876-86850895 None:intergenic 40.0%
CTTTGTCTTATGTACGATGC+AGG + chr3_2:86850904-86850923 Msa0434090:intron 40.0%
! AATGCTTTTCACTTACCACC+TGG + chr3_2:86851181-86851200 Msa0434090:CDS 40.0%
TGATCTTAATCATGTTCGGG+CGG + chr3_2:86851316-86851335 Msa0434090:intron 40.0%
GCAGAACTACTTAAGTGTGA+AGG + chr3_2:86851372-86851391 Msa0434090:CDS 40.0%
! GGTTCTGTGTTGCTCTTTAA+AGG + chr3_2:86851437-86851456 Msa0434090:CDS 40.0%
TTTACGTTTGCGAATCAAGC+TGG + chr3_2:86851587-86851606 Msa0434090:CDS 40.0%
TATACCTGCTGCATTATCTG+GGG - chr3_2:86851710-86851729 None:intergenic 40.0%
CTATACCTGCTGCATTATCT+GGG - chr3_2:86851711-86851730 None:intergenic 40.0%
ACTATACCTGCTGCATTATC+TGG - chr3_2:86851712-86851731 None:intergenic 40.0%
!! TGTTAACGGGTATTGGGAAA+TGG + chr3_2:86851763-86851782 Msa0434090:intron 40.0%
CAGGGTTTCATGTGTATTCA+AGG + chr3_2:86851905-86851924 Msa0434090:intron 40.0%
GGTTTCATGTGTATTCAAGG+TGG + chr3_2:86851908-86851927 Msa0434090:CDS 40.0%
CAATAGGAAGGAAGGAAGGA+AGG - chr3_2:86846483-86846502 None:intergenic 45.0%
TGTGCAATAGGAAGGAAGGA+AGG - chr3_2:86846487-86846506 None:intergenic 45.0%
TGTGTGTGCAATAGGAAGGA+AGG - chr3_2:86846491-86846510 None:intergenic 45.0%
!! GTTGGGTTGGATTTGGAAGA+AGG + chr3_2:86846576-86846595 Msa0434090:five_prime_UTR 45.0%
GTGAGTTCAGGATGCAAAGA+TGG + chr3_2:86846621-86846640 Msa0434090:CDS 45.0%
! CTGCGAAGAGAAGTAGGTTT+TGG - chr3_2:86846732-86846751 None:intergenic 45.0%
CAAAACCTACTTCTCTTCGC+AGG + chr3_2:86846730-86846749 Msa0434090:CDS 45.0%
GAAGGTTACAAGCTGTGAAC+AGG + chr3_2:86846957-86846976 Msa0434090:CDS 45.0%
GCAACTTGACCAGACTCAAA+TGG - chr3_2:86847221-86847240 None:intergenic 45.0%
TGTGAGTCAGTGGTAACAAG+CGG + chr3_2:86847392-86847411 Msa0434090:CDS 45.0%
! CAGACTTTTGTCCATTGCAG+AGG + chr3_2:86847628-86847647 Msa0434090:intron 45.0%
TGCTAAAGTCTCCTCTGCAA+TGG - chr3_2:86847642-86847661 None:intergenic 45.0%
GGGTAATTAACCTTCATCCC+GGG - chr3_2:86847713-86847732 None:intergenic 45.0%
! GAATGTTTTGTAGCCTGGTC+CGG + chr3_2:86848229-86848248 Msa0434090:intron 45.0%
GCAACGATTCCAATGGAATC+CGG - chr3_2:86848251-86848270 None:intergenic 45.0%
TCCTCAAAGATAGGCTCTCA+TGG + chr3_2:86848445-86848464 Msa0434090:CDS 45.0%
ACCATGAGAGCCTATCTTTG+AGG - chr3_2:86848449-86848468 None:intergenic 45.0%
GTTATGTCCACAGGAAATGG+AGG + chr3_2:86848501-86848520 Msa0434090:CDS 45.0%
AATGGTTCCTCCATTTCCTG+TGG - chr3_2:86848511-86848530 None:intergenic 45.0%
GGTCTAATCAGATAACCGCT+AGG - chr3_2:86848956-86848975 None:intergenic 45.0%
TGATTAGACCCTGTGAAGGA+GGG + chr3_2:86848966-86848985 Msa0434090:CDS 45.0%
AAAACTTCAGGCACACTCCA+AGG - chr3_2:86849119-86849138 None:intergenic 45.0%
TAAAGTGGGCGCAAAACTTC+AGG - chr3_2:86849131-86849150 None:intergenic 45.0%
GCTTGCTCAGAGAACAACTA+TGG + chr3_2:86849166-86849185 Msa0434090:CDS 45.0%
GGATTCAACGAAGCTGTCAA+CGG + chr3_2:86849484-86849503 Msa0434090:CDS 45.0%
GATTCAACGAAGCTGTCAAC+GGG + chr3_2:86849485-86849504 Msa0434090:CDS 45.0%
! GTCAACGGGTTTACAGATGA+TGG + chr3_2:86849499-86849518 Msa0434090:CDS 45.0%
!! ACGGGTTTACAGATGATGGA+TGG + chr3_2:86849503-86849522 Msa0434090:CDS 45.0%
TTTGGCACATAGCACAGAAC+TGG - chr3_2:86849638-86849657 None:intergenic 45.0%
GCCGAGTATCAGAAGTCATT+TGG - chr3_2:86849844-86849863 None:intergenic 45.0%
! GCTACATGGACCAGCTTTAA+TGG - chr3_2:86850102-86850121 None:intergenic 45.0%
TGCTCAATTGTGTGAGCTAG+TGG - chr3_2:86850170-86850189 None:intergenic 45.0%
TCACACAATTGAGCACGAAG+AGG + chr3_2:86850175-86850194 Msa0434090:intron 45.0%
AGGGATGATATGACAATGCC+TGG + chr3_2:86850378-86850397 Msa0434090:CDS 45.0%
! CATCTTCCTCAGCTTTGTAG+TGG + chr3_2:86850672-86850691 Msa0434090:intron 45.0%
GAACCACTGGAAACAAAGCA+GGG + chr3_2:86850978-86850997 Msa0434090:CDS 45.0%
AACCACTGGAAACAAAGCAG+GGG + chr3_2:86850979-86850998 Msa0434090:CDS 45.0%
GGGTGTCAATTCAGGTCATT+CGG + chr3_2:86851000-86851019 Msa0434090:CDS 45.0%
GGTGTCAATTCAGGTCATTC+GGG + chr3_2:86851001-86851020 Msa0434090:CDS 45.0%
! GATGGGCTTCAAATGCAAAC+TGG - chr3_2:86851057-86851076 None:intergenic 45.0%
TCTGAGAACCAAAACGCGAA+GGG - chr3_2:86851162-86851181 None:intergenic 45.0%
! TTCTGAGAACCAAAACGCGA+AGG - chr3_2:86851163-86851182 None:intergenic 45.0%
CTGAAGCACAAACGCTTACT+CGG + chr3_2:86851209-86851228 Msa0434090:CDS 45.0%
GGTGGATCTGTAACAGCTAT+AGG + chr3_2:86851230-86851249 Msa0434090:CDS 45.0%
GATGTCTTGAAGTGCAACCA+GGG - chr3_2:86851633-86851652 None:intergenic 45.0%
TGATGTCTTGAAGTGCAACC+AGG - chr3_2:86851634-86851653 None:intergenic 45.0%
ATACCTGCTGCATTATCTGG+GGG - chr3_2:86851709-86851728 None:intergenic 45.0%
TTTGTTTATCCAGCATGGGG+AGG + chr3_2:86851933-86851952 Msa0434090:CDS 45.0%
CTTATGAGAGAGCTGTAGCA+TGG + chr3_2:86851963-86851982 Msa0434090:CDS 45.0%
!!! TTTAAATTTAAATATGATTT+TGG + chr3_2:86851549-86851568 Msa0434090:intron 5.0%
! AGGATGATGGCAGTGAGTTC+AGG + chr3_2:86846609-86846628 Msa0434090:exon 50.0%
AAGGTACACACCAGAGCAAG+TGG + chr3_2:86846677-86846696 Msa0434090:CDS 50.0%
TCAAGTGCTTCCACTTGCTC+TGG - chr3_2:86846690-86846709 None:intergenic 50.0%
TGTTGCCTGCGAAGAGAAGT+AGG - chr3_2:86846738-86846757 None:intergenic 50.0%
GAGAAGCAGAGGAAAGAAGC+TGG + chr3_2:86846935-86846954 Msa0434090:CDS 50.0%
AGCAGAGGAAAGAAGCTGGA+AGG + chr3_2:86846939-86846958 Msa0434090:CDS 50.0%
TACTGGAACCGCTGTTGAGT+GGG + chr3_2:86847679-86847698 Msa0434090:CDS 50.0%
CATTTGGACCCACTCAACAG+CGG - chr3_2:86847690-86847709 None:intergenic 50.0%
TAACCTTCATCCCGGGCATT+TGG - chr3_2:86847706-86847725 None:intergenic 50.0%
ATTCCAATGGAATCCGGACC+AGG - chr3_2:86848245-86848264 None:intergenic 50.0%
GCAATTTCTCATGGTTCCCC+TGG + chr3_2:86848269-86848288 Msa0434090:CDS 50.0%
GTATCGTGATTGCCGAACTG+TGG + chr3_2:86848467-86848486 Msa0434090:CDS 50.0%
GTTGTATGCGCCAACAACTC+TGG + chr3_2:86848671-86848690 Msa0434090:intron 50.0%
! GCTGCGCTACACATCACTTT+TGG + chr3_2:86848716-86848735 Msa0434090:CDS 50.0%
!! GCGCTACACATCACTTTTGG+AGG + chr3_2:86848719-86848738 Msa0434090:CDS 50.0%
TTTGGAGGATGGCAGTCTTG+TGG + chr3_2:86848734-86848753 Msa0434090:CDS 50.0%
! CTAACAAAATGCGGCACTGG+AGG - chr3_2:86848920-86848939 None:intergenic 50.0%
GCTCTAACAAAATGCGGCAC+TGG - chr3_2:86848923-86848942 None:intergenic 50.0%
!! AGAGCTGAAGTGTTGCCTAG+CGG + chr3_2:86848938-86848957 Msa0434090:CDS 50.0%
CTGATTAGACCCTGTGAAGG+AGG + chr3_2:86848965-86848984 Msa0434090:CDS 50.0%
GATTAGACCCTGTGAAGGAG+GGG + chr3_2:86848967-86848986 Msa0434090:CDS 50.0%
ATTAGACCCTGTGAAGGAGG+GGG + chr3_2:86848968-86848987 Msa0434090:CDS 50.0%
TGTTCTCTGAGCAAGCAGCA+TGG - chr3_2:86849162-86849181 None:intergenic 50.0%
GTTTCTCAGCCAAGTGTGAC+AGG + chr3_2:86849321-86849340 Msa0434090:CDS 50.0%
TCAGCCAAGTGTGACAGGAT+GGG + chr3_2:86849326-86849345 Msa0434090:CDS 50.0%
AGCACAGAACTGGTGACAGA+TGG - chr3_2:86849628-86849647 None:intergenic 50.0%
GTCCTTGTAGAATGTCCCTC+CGG + chr3_2:86850001-86850020 Msa0434090:intron 50.0%
TGCGGGAACACAGATCAGAA+TGG + chr3_2:86850042-86850061 Msa0434090:CDS 50.0%
GCGGGAACACAGATCAGAAT+GGG + chr3_2:86850043-86850062 Msa0434090:CDS 50.0%
TCAGCAGCTGCCATTAAAGC+TGG + chr3_2:86850089-86850108 Msa0434090:CDS 50.0%
! TCCTCAGCTTTGTAGTGGAG+TGG + chr3_2:86850677-86850696 Msa0434090:intron 50.0%
TCCACTCCACTACAAAGCTG+AGG - chr3_2:86850681-86850700 None:intergenic 50.0%
! GATGCACCCATTTTGCCTTC+TGG + chr3_2:86850765-86850784 Msa0434090:CDS 50.0%
CTTGCCGTGCTAGATTCAAG+AGG - chr3_2:86850804-86850823 None:intergenic 50.0%
CAGAAGCAAGATCGAGTGTG+CGG - chr3_2:86850946-86850965 None:intergenic 50.0%
CGATCTTGCTTCTGCACTTG+AGG + chr3_2:86850952-86850971 Msa0434090:CDS 50.0%
CTTGCTTCTGCACTTGAGGT+TGG + chr3_2:86850956-86850975 Msa0434090:CDS 50.0%
GGAACCACTGGAAACAAAGC+AGG + chr3_2:86850977-86850996 Msa0434090:CDS 50.0%
ACCACTGGAAACAAAGCAGG+GGG + chr3_2:86850980-86850999 Msa0434090:CDS 50.0%
!! AAAGCAGGGGGTGTCAATTC+AGG + chr3_2:86850992-86851011 Msa0434090:CDS 50.0%
CTGAGAACCAAAACGCGAAG+GGG - chr3_2:86851161-86851180 None:intergenic 50.0%
GTTTGTGCTTCAGGAGTTCC+AGG - chr3_2:86851202-86851221 None:intergenic 50.0%
CGAGTAAGCGTTTGTGCTTC+AGG - chr3_2:86851211-86851230 None:intergenic 50.0%
AAGCACAAACGCTTACTCGG+TGG + chr3_2:86851212-86851231 Msa0434090:CDS 50.0%
CGCATCTGAGTGATGCCAAA+GGG - chr3_2:86851418-86851437 None:intergenic 50.0%
CCTTTGGCATCACTCAGATG+CGG + chr3_2:86851416-86851435 Msa0434090:CDS 50.0%
TGACATGCTTGAAACCACCC+TGG + chr3_2:86851613-86851632 Msa0434090:CDS 50.0%
ATTCCCCCAGATAATGCAGC+AGG + chr3_2:86851703-86851722 Msa0434090:CDS 50.0%
ACAGACGACCCTTGCCACTA+CGG + chr3_2:86847361-86847380 Msa0434090:intron 55.0%
ACTCGTGTCCGTAGTGGCAA+GGG - chr3_2:86847372-86847391 None:intergenic 55.0%
AACTCGTGTCCGTAGTGGCA+AGG - chr3_2:86847373-86847392 None:intergenic 55.0%
CTCACAACTCGTGTCCGTAG+TGG - chr3_2:86847378-86847397 None:intergenic 55.0%
GGACACGAGTTGTGAGTCAG+TGG + chr3_2:86847382-86847401 Msa0434090:CDS 55.0%
CTACTGGAACCGCTGTTGAG+TGG + chr3_2:86847678-86847697 Msa0434090:CDS 55.0%
GTTGAGTGGGTCCAAATGCC+CGG + chr3_2:86847692-86847711 Msa0434090:CDS 55.0%
TTGAGTGGGTCCAAATGCCC+GGG + chr3_2:86847693-86847712 Msa0434090:CDS 55.0%
TAGCCTGGTCCGGATTCCAT+TGG + chr3_2:86848239-86848258 Msa0434090:intron 55.0%
TTCTCATGGTTCCCCTGGAG+TGG + chr3_2:86848274-86848293 Msa0434090:CDS 55.0%
TTGCAGGTTCAAGACCCACG+AGG - chr3_2:86848316-86848335 None:intergenic 55.0%
TCGTGGGTCTTGAACCTGCA+AGG + chr3_2:86848315-86848334 Msa0434090:CDS 55.0%
CGTGGGTCTTGAACCTGCAA+GGG + chr3_2:86848316-86848335 Msa0434090:CDS 55.0%
ATGGATCCCCCTCCTTCACA+GGG - chr3_2:86848977-86848996 None:intergenic 55.0%
TATGGATCCCCCTCCTTCAC+AGG - chr3_2:86848978-86848997 None:intergenic 55.0%
CTCAGCCAAGTGTGACAGGA+TGG + chr3_2:86849325-86849344 Msa0434090:CDS 55.0%
CAGCCAAGTGTGACAGGATG+GGG + chr3_2:86849327-86849346 Msa0434090:CDS 55.0%
CTTCCCCATCCTGTCACACT+TGG - chr3_2:86849333-86849352 None:intergenic 55.0%
CAAGTGTGACAGGATGGGGA+AGG + chr3_2:86849331-86849350 Msa0434090:CDS 55.0%
CTAAGCGCACGTAAAGCTGC+AGG - chr3_2:86849360-86849379 None:intergenic 55.0%
AGCCGGAGGGACATTCTACA+AGG - chr3_2:86850006-86850025 None:intergenic 55.0%
! CTGGTCCATGTAGCTTGCCA+GGG + chr3_2:86850108-86850127 Msa0434090:CDS 55.0%
! TGGTCCATGTAGCTTGCCAG+GGG + chr3_2:86850109-86850128 Msa0434090:CDS 55.0%
ACCACCAAAAGCTCCTGCTC+GGG - chr3_2:86850135-86850154 None:intergenic 55.0%
GACCACCAAAAGCTCCTGCT+CGG - chr3_2:86850136-86850155 None:intergenic 55.0%
!! AGCAGGAGCTTTTGGTGGTC+AGG + chr3_2:86850136-86850155 Msa0434090:CDS 55.0%
GCAAGATCGAGTGTGCGGTT+AGG - chr3_2:86850941-86850960 None:intergenic 55.0%
GCACTTGAGGTTGGAACCAC+TGG + chr3_2:86850965-86850984 Msa0434090:CDS 55.0%
!! ACCCCCTGCTTTGTTTCCAG+TGG - chr3_2:86850984-86851003 None:intergenic 55.0%
! GCACTTTCCCCTTCGCGTTT+TGG + chr3_2:86851151-86851170 Msa0434090:CDS 55.0%
TGTGCTTCAGGAGTTCCAGG+TGG - chr3_2:86851199-86851218 None:intergenic 55.0%
CCGCATCTGAGTGATGCCAA+AGG - chr3_2:86851419-86851438 None:intergenic 55.0%
GTCTTGAAGTGCAACCAGGG+TGG - chr3_2:86851630-86851649 None:intergenic 55.0%
CTGGGGGAATTCAGAGCACA+GGG - chr3_2:86851693-86851712 None:intergenic 55.0%
TCTGGGGGAATTCAGAGCAC+AGG - chr3_2:86851694-86851713 None:intergenic 55.0%
! AGTTATTGGCCTCCCCATGC+TGG - chr3_2:86851945-86851964 None:intergenic 55.0%
GTGGGCATATGCACCACCTA+TGG + chr3_2:86852160-86852179 Msa0434090:three_prime_UTR 55.0%
GCAGGTGCAGAGAGAAGCAG+AGG + chr3_2:86846924-86846943 Msa0434090:intron 60.0%
CGGTCAGCAGCATCCACCAA+GGG + chr3_2:86847412-86847431 Msa0434090:CDS 60.0%
CAAGGGATGCAAGCCCTGCT+GGG + chr3_2:86847429-86847448 Msa0434090:CDS 60.0%
GGTCCAAATGCCCGGGATGA+AGG + chr3_2:86847700-86847719 Msa0434090:CDS 60.0%
! CGACCTGGTGCCAGAGTTGT+TGG - chr3_2:86848684-86848703 None:intergenic 60.0%
AGCAACCAGAAGTCGCGACC+TGG - chr3_2:86848699-86848718 None:intergenic 60.0%
! TGCGGCACTGGAGGCATACT+AGG - chr3_2:86848911-86848930 None:intergenic 60.0%
GTGTGACAGGATGGGGAAGG+CGG + chr3_2:86849334-86849353 Msa0434090:CDS 60.0%
! GCTGGTCCATGTAGCTTGCC+AGG + chr3_2:86850107-86850126 Msa0434090:CDS 60.0%
GGAGTGGACGAGCATGCAGT+TGG + chr3_2:86850693-86850712 Msa0434090:CDS 60.0%
GCGGTCAGCAGCATCCACCA+AGG + chr3_2:86847411-86847430 Msa0434090:CDS 65.0%
GCAGGGCTTGCATCCCTTGG+TGG - chr3_2:86847428-86847447 None:intergenic 65.0%
CCAGCAGGGCTTGCATCCCT+TGG - chr3_2:86847431-86847450 None:intergenic 65.0%
CCAAGGGATGCAAGCCCTGC+TGG + chr3_2:86847428-86847447 Msa0434090:CDS 65.0%
AGGCACGTGCAGCCACTCCA+GGG - chr3_2:86848289-86848308 None:intergenic 65.0%
TTCAAGACCCACGAGGCCGC+AGG - chr3_2:86848309-86848328 None:intergenic 65.0%
GCGCCAACAACTCTGGCACC+AGG + chr3_2:86848678-86848697 Msa0434090:CDS 65.0%
TGGCACCAGGTCGCGACTTC+TGG + chr3_2:86848691-86848710 Msa0434090:CDS 65.0%
! GCCCGAGCAGGAGCTTTTGG+TGG + chr3_2:86850131-86850150 Msa0434090:CDS 65.0%
GGCACGTGCAGCCACTCCAG+GGG - chr3_2:86848288-86848307 None:intergenic 70.0%
CAGGCACGTGCAGCCACTCC+AGG - chr3_2:86848290-86848309 None:intergenic 70.0%
GGAGTGGCTGCACGTGCCTG+CGG + chr3_2:86848290-86848309 Msa0434090:CDS 70.0%
CGGGCCCCTGGCAAGCTACA+TGG - chr3_2:86850116-86850135 None:intergenic 70.0%
AAAGCTCCTGCTCGGGCCCC+TGG - chr3_2:86850128-86850147 None:intergenic 70.0%
! GGGGCCCGAGCAGGAGCTTT+TGG + chr3_2:86850128-86850147 Msa0434090:CDS 70.0%
TGCACGTGCCTGCGGCCTCG+TGG + chr3_2:86848298-86848317 Msa0434090:CDS 75.0%
GCACGTGCCTGCGGCCTCGT+GGG + chr3_2:86848299-86848318 Msa0434090:CDS 75.0%
AGCTTGCCAGGGGCCCGAGC+AGG + chr3_2:86850119-86850138 Msa0434090:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86846364 86852229 86846364 ID=Msa0434090;Name=Msa0434090
chr3_2 mRNA 86846364 86852229 86846364 ID=Msa0434090-mRNA-1;Parent=Msa0434090;Name=Msa0434090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=248|0.88|0.88|1|1|1|18|175|826
chr3_2 exon 86846364 86846829 86846364 ID=Msa0434090-mRNA-1:exon:25164;Parent=Msa0434090-mRNA-1
chr3_2 exon 86846928 86847087 86846928 ID=Msa0434090-mRNA-1:exon:25165;Parent=Msa0434090-mRNA-1
chr3_2 exon 86847365 86847450 86847365 ID=Msa0434090-mRNA-1:exon:25166;Parent=Msa0434090-mRNA-1
chr3_2 exon 86847631 86847721 86847631 ID=Msa0434090-mRNA-1:exon:25167;Parent=Msa0434090-mRNA-1
chr3_2 exon 86848242 86848337 86848242 ID=Msa0434090-mRNA-1:exon:25168;Parent=Msa0434090-mRNA-1
chr3_2 exon 86848435 86848548 86848435 ID=Msa0434090-mRNA-1:exon:25169;Parent=Msa0434090-mRNA-1
chr3_2 exon 86848672 86848755 86848672 ID=Msa0434090-mRNA-1:exon:25170;Parent=Msa0434090-mRNA-1
chr3_2 exon 86848872 86849027 86848872 ID=Msa0434090-mRNA-1:exon:25171;Parent=Msa0434090-mRNA-1
chr3_2 exon 86849116 86849190 86849116 ID=Msa0434090-mRNA-1:exon:25172;Parent=Msa0434090-mRNA-1
chr3_2 exon 86849288 86849394 86849288 ID=Msa0434090-mRNA-1:exon:25173;Parent=Msa0434090-mRNA-1
chr3_2 exon 86849483 86849675 86849483 ID=Msa0434090-mRNA-1:exon:25174;Parent=Msa0434090-mRNA-1
chr3_2 exon 86850011 86850157 86850011 ID=Msa0434090-mRNA-1:exon:25175;Parent=Msa0434090-mRNA-1
chr3_2 exon 86850339 86850419 86850339 ID=Msa0434090-mRNA-1:exon:25176;Parent=Msa0434090-mRNA-1
chr3_2 exon 86850684 86850833 86850684 ID=Msa0434090-mRNA-1:exon:25177;Parent=Msa0434090-mRNA-1
chr3_2 exon 86850926 86851251 86850926 ID=Msa0434090-mRNA-1:exon:25178;Parent=Msa0434090-mRNA-1
chr3_2 exon 86851359 86851458 86851359 ID=Msa0434090-mRNA-1:exon:25179;Parent=Msa0434090-mRNA-1
chr3_2 exon 86851575 86851724 86851575 ID=Msa0434090-mRNA-1:exon:25180;Parent=Msa0434090-mRNA-1
chr3_2 exon 86851908 86852229 86851908 ID=Msa0434090-mRNA-1:exon:25181;Parent=Msa0434090-mRNA-1
chr3_2 five_prime_UTR 86846364 86846611 86846364 ID=Msa0434090-mRNA-1:five_prime_utr;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86846612 86846829 86846612 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86846928 86847087 86846928 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86847365 86847450 86847365 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86847631 86847721 86847631 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86848242 86848337 86848242 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86848435 86848548 86848435 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86848672 86848755 86848672 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86848872 86849027 86848872 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86849116 86849190 86849116 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86849288 86849394 86849288 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86849483 86849675 86849483 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86850011 86850157 86850011 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86850339 86850419 86850339 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86850684 86850833 86850684 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86850926 86851251 86850926 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86851359 86851458 86851359 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86851575 86851724 86851575 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 CDS 86851908 86852054 86851908 ID=Msa0434090-mRNA-1:cds;Parent=Msa0434090-mRNA-1
chr3_2 three_prime_UTR 86852055 86852229 86852055 ID=Msa0434090-mRNA-1:three_prime_utr;Parent=Msa0434090-mRNA-1
Gene Sequence

>Msa0434090

ATGATGGCAGTGAGTTCAGGATGCAAAGATGGTAGCAAGATAGCAATGGACAATGGAAAGTACGTAAGGTACACACCAGAGCAAGTGGAAGCACTTGAAAGACTCTACCATGAATGTCCAAAACCTACTTCTCTTCGCAGGCAACAACTCATTAGAGAGTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAACAGAAGGTGCAGAGAGAAGCAGAGGAAAGAAGCTGGAAGGTTACAAGCTGTGAACAGGAAGTTAACAGCAATGAACAAACTGCTTATGGAGGAAAATGATAGATTGCAGAAACAAGTGTCACACCTTGTGTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTTGCCACTACGGACACGAGTTGTGAGTCAGTGGTAACAAGCGGTCAGCAGCATCCACCAAGGGATGCAAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCTGCACGTGCCTGCGGCCTCGTGGGTCTTGAACCTGCAAGGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGGAAATGGAGGAACCATTGAATTGCTTTACATGCAGTTGTATGCGCCAACAACTCTGGCACCAGGTCGCGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGCAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACACAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTTAGAGCTGAAGTGTTGCCTAGCGGTTATCTGATTAGACCCTGTGAAGGAGGGGGATCCATAATTCATATTGTTGATCATATGCTTTTAGAGCCTTGGAGTGTGCCTGAAGTTTTGCGCCCACTTTATGAGTCATCCATGCTGCTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTAAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGGCGGCCTGCAGCTTTACGTGCGCTTAGTCAAAGATTGAGCAAGGGATTCAACGAAGCTGTCAACGGGTTTACAGATGATGGATGGTCTATGTTAGATAGTGATGGAATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGATTTTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCAGCAGCTGCCATTAAAGCTGGTCCATGTAGCTTGCCAGGGGCCCGAGCAGGAGCTTTTGGTGGTCAGTTCATGGAGGTTATCAAGCTTGAGAACATGGGCTACTATAGGGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTTTGTAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAGCTTATTTTTGCTCCAATTGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGTTTTCGTATCATACCTCTTGAATCTAGCACGGCAAGTCTTCTTTATGATGCTGCTAGTCCTAACCGCACACTCGATCTTGCTTCTGCACTTGAGGTTGGAACCACTGGAAACAAAGCAGGGGGTGTCAATTCAGGTCATTCGGGCAACACAAAATCTGTGATGACAATAGCGTTCCAGTTTGCATTTGAAGCCCATCTTCAAGATAATATCGCAGCTATGGCGCGACAGTATGTGCGTAGCATTGTTGCATCTGTTCAGAGAGTTTCATTAGCACTTTCCCCTTCGCGTTTTGGTTCTCAGAATGCTTTTCACTTACCACCTGGAACTCCTGAAGCACAAACGCTTACTCGGTGGATCTGTAACAGCTATAGATTCTATCTAGGCGCAGAACTACTTAAGTGTGAAGGGAGTGAATCGATACTTAAATCCCTTTGGCATCACTCAGATGCGGTTCTGTGTTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCGAATCAAGCTGGACTTGACATGCTTGAAACCACCCTGGTTGCACTTCAAGACATCACCCTAGAAAAGATATTTGATGACAATGGAAAGAAAACCCTGTGCTCTGAATTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCTGTAGCATGGAAAGTATTGAACGAAGAAGAATCTGCTCATTGCATCTGTTTCATGTTCATCAATTGGTCTTTTGTCTAG
Protein sequence

>Msa0434090

MMAVSSGCKDGSKIAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQNTTLATTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPSMPPVPHFVRAEVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSMLDSDGIDDVTLLVNSSPSKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARAGAFGGQFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLESSTASLLYDAASPNRTLDLASALEVGTTGNKAGGVNSGHSGNTKSVMTIAFQFAFEAHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLTRWICNSYRFYLGAELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCICFMFINWSFV*