AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195140 MtrunA17_Chr2g0292021 92.687 547 20 1 1 527 1 547 0.0 1018
Msa0195140 MtrunA17_Chr2g0292011 94.497 527 26 1 1 527 1 524 0.0 1009
Msa0195140 MtrunA17_Chr7g0237461 91.082 527 27 1 1 527 1 507 0.0 973
Msa0195140 MtrunA17_Chr8g0347561 64.491 521 147 6 1 518 22 507 0.0 662
Msa0195140 MtrunA17_Chr7g0262211 52.794 519 207 2 1 519 24 504 0.0 588
Msa0195140 MtrunA17_Chr7g0262201 53.101 516 204 2 4 519 1 478 0.0 587
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195140 AT2G20340.1 51.737 518 212 2 1 518 9 488 0.0 588
Msa0195140 AT4G28680.1 51.145 524 214 5 1 520 57 542 0.0 560
Msa0195140 AT4G28680.3 51.141 526 213 6 1 520 57 544 0.0 557
Msa0195140 AT4G28680.4 51.141 526 213 6 1 520 48 535 0.0 557
Msa0195140 AT4G28680.2 51.141 526 213 6 1 520 57 544 0.0 557
Msa0195140 AT4G28680.5 48.556 554 213 7 1 520 48 563 0.0 542
Msa0195140 AT2G20340.2 47.297 518 208 2 1 518 9 461 0.0 529
Msa0195140 AT4G28680.7 56.047 339 142 3 1 333 48 385 1.06e-138 408
Msa0195140 AT4G28680.6 55.763 321 136 2 1 315 48 368 1.02e-132 390

Find 71 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGTAAACTTGTTGTTTA+TGG 0.117744 2_1:-11885611 Msa0195140:CDS
TCGCGAAAGATTATGGAATT+TGG 0.139532 2_1:-11885355 Msa0195140:CDS
TACAACCTGTGAAGGTATTT+TGG 0.146910 2_1:-11885687 Msa0195140:CDS
AAACACTTTATCAAAGAATT+TGG 0.150243 2_1:+11885179 None:intergenic
GATAAAATTCTTAGCAAAAT+TGG 0.200556 2_1:-11885644 Msa0195140:CDS
TGCAATGTCGCGAAAGATTA+TGG 0.240155 2_1:-11885362 Msa0195140:CDS
ATTTAGATTGTTGTTGTCTT+TGG 0.242997 2_1:-11885211 Msa0195140:CDS
AACGACGAATTCTGAGTATT+TGG 0.245937 2_1:-11885153 Msa0195140:CDS
GGTAGCACAGCAGGGTTCTT+AGG 0.266911 2_1:-11885869 Msa0195140:CDS
GGAAAATAAGCAAAGTAATT+AGG 0.271671 2_1:+11885899 None:intergenic
TTAGTCTTAATGCTCATAAA+TGG 0.276313 2_1:-11885244 Msa0195140:CDS
ATTGTTGATAACAATGATTC+AGG 0.282223 2_1:+11885479 None:intergenic
TTGTTGTTGTCTTTGGTTAA+AGG 0.284413 2_1:-11885204 Msa0195140:CDS
CGCGAAAGATTATGGAATTT+GGG 0.294467 2_1:-11885354 Msa0195140:CDS
TGAACGTTGTTGGATTTAAC+TGG 0.304439 2_1:-11885826 Msa0195140:CDS
TAGAAAATGTTGTTATAGAT+TGG 0.319360 2_1:-11885778 Msa0195140:CDS
CAGAGGAAATGCATGTGATT+AGG 0.320772 2_1:-11884635 Msa0195140:CDS
TTGGATTCTATCAATGGTTC+AGG 0.342114 2_1:-11884729 Msa0195140:CDS
CCTGCTGTGCTACCACTTGA+TGG 0.350739 2_1:+11885878 None:intergenic
GAAGATGTTATTGTTGCTAA+TGG 0.351139 2_1:-11884825 Msa0195140:CDS
AGAGGAAATGCATGTGATTA+GGG 0.354844 2_1:-11884634 Msa0195140:CDS
TTGAATTCTGTAGTATCTAG+TGG 0.355450 2_1:+11886121 None:intergenic
TGAAATTAATCGTAAGTTGT+TGG 0.367956 2_1:-11884748 Msa0195140:CDS
GCTATGGTGTTGATAATCTT+AGG 0.377963 2_1:-11885028 Msa0195140:CDS
TTTAAGGAACCATGTTGAAA+TGG 0.378514 2_1:-11885000 Msa0195140:CDS
CCGAAGATTTCGCGCTTTGA+AGG 0.381530 2_1:-11885069 Msa0195140:CDS
CCTTCAAAGCGCGAAATCTT+CGG 0.384803 2_1:+11885069 None:intergenic
CCATCAAGTGGTAGCACAGC+AGG 0.386882 2_1:-11885878 Msa0195140:CDS
GAGTTTAGATATTTGATTGA+TGG 0.395614 2_1:-11885287 Msa0195140:CDS
AGGATGGTTTCAATAGGTTC+AGG 0.403995 2_1:+11885971 None:intergenic
AGCACTGGATTGAACGTTGT+TGG 0.408006 2_1:-11885836 Msa0195140:CDS
TCTTCAAGGATGGTTTCAAT+AGG 0.409255 2_1:+11885965 None:intergenic
AAGTTGTTGGATTCTATCAA+TGG 0.412524 2_1:-11884735 Msa0195140:CDS
TGGTTTGTTCTTAGAAGCTA+TGG 0.413847 2_1:-11885044 Msa0195140:CDS
GATTTCGCGCTTTGAAGGTA+TGG 0.415981 2_1:-11885064 Msa0195140:CDS
CATGTTGATGCTGCCTATGC+TGG 0.416728 2_1:-11885329 Msa0195140:CDS
CTTTGCCAATGTGTTATACC+TGG 0.443144 2_1:+11885923 None:intergenic
AAGTGGTTGATTACAAAGAT+TGG 0.455962 2_1:-11885106 Msa0195140:CDS
TGCTTTCTTTGTGTAACTGT+TGG 0.466597 2_1:-11885425 Msa0195140:CDS
TTAGGAGAAATGTTAAGCAC+TGG 0.472185 2_1:-11885851 Msa0195140:CDS
TTCAACGACCGCAATTGATC+CGG 0.477720 2_1:-11885396 Msa0195140:CDS
AGTTTGGTTCTACTTGACTT+AGG 0.478980 2_1:+11886032 None:intergenic
ATGACTCATGCTGTGGTTGA+AGG 0.487228 2_1:-11884696 Msa0195140:CDS
GCTAATGGAAAGGTAACAAA+TGG 0.487672 2_1:-11884870 Msa0195140:CDS
AAATGCATGTGATTAGGGCT+TGG 0.493317 2_1:-11884629 Msa0195140:CDS
AGTTCCCAAAATACCTTCAC+AGG 0.500257 2_1:+11885682 None:intergenic
TGAATTCTGTAGTATCTAGT+GGG 0.505218 2_1:+11886122 None:intergenic
GGTTGGTGAAAATGGACAAA+AGG 0.505578 2_1:-11884962 Msa0195140:CDS
GGATTTGAAGGTGCAAAAGA+AGG 0.506622 2_1:+11885992 None:intergenic
ACTTATCAGTCTTAATAGCC+CGG 0.511731 2_1:+11885522 None:intergenic
TCAATAGGTTCAGGATTTGA+AGG 0.516728 2_1:+11885980 None:intergenic
GGTTGATTACAAAGATTGGC+AGG 0.516909 2_1:-11885102 Msa0195140:CDS
GGTTCTACTTGACTTAGGAC+AGG 0.523508 2_1:+11886037 None:intergenic
TTTGTGATTAGGTGTGCAGT+TGG 0.533057 2_1:-11884669 Msa0195140:CDS
TGCTTCTGATTCAAAACAAG+TGG 0.538782 2_1:-11885123 Msa0195140:CDS
GCTAATGGAAAGGTGACAAA+TGG 0.553773 2_1:-11884810 Msa0195140:CDS
TTATTAGGTACAACCTGTGA+AGG 0.556540 2_1:-11885695 Msa0195140:CDS
AATGTTGTTATAGATTGGCT+TGG 0.556855 2_1:-11885773 Msa0195140:CDS
TTTGCCAATGTGTTATACCT+GGG 0.567911 2_1:+11885924 None:intergenic
AAAATTGGTAGTGAAAATGT+AGG 0.570092 2_1:-11885629 Msa0195140:CDS
GCATGTGATTAGGGCTTGGA+AGG 0.593106 2_1:-11884625 Msa0195140:CDS
AATACAAGCACTACCAGCAT+AGG 0.595481 2_1:+11885316 None:intergenic
CATCAAGTGGTAGCACAGCA+GGG 0.607312 2_1:-11885877 Msa0195140:CDS
TCAATCAAATATCTAAACTC+AGG 0.607405 2_1:+11885290 None:intergenic
ACAGTTACACAAAGAAAGCA+AGG 0.627492 2_1:+11885428 None:intergenic
TGTTATTGTTGCTAATGGAA+AGG 0.631501 2_1:-11884820 Msa0195140:CDS
AGTTGGAGCAACTTTAACAG+AGG 0.632037 2_1:-11884652 Msa0195140:CDS
TAATCCCAGGTATAACACAT+TGG 0.657713 2_1:-11885928 Msa0195140:CDS
TGTGTACATGACTCATGCTG+TGG 0.661042 2_1:-11884703 Msa0195140:CDS
ACTACAGAATTCAAGAAACA+AGG 0.665050 2_1:-11886112 Msa0195140:CDS
ACGACCGCAATTGATCCGGT+AGG 0.680678 2_1:-11885392 Msa0195140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATGATTTGAAAAA+TGG - chr2_1:11885235-11885254 Msa0195140:CDS 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG - chr2_1:11885677-11885696 Msa0195140:CDS 15.0%
!! ATACAAAATGATTTGAAAAA+TGG - chr2_1:11885235-11885254 Msa0195140:CDS 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG - chr2_1:11885677-11885696 Msa0195140:CDS 15.0%
!! TAGAAAATGTTGTTATAGAT+TGG - chr2_1:11884915-11884934 Msa0195140:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG - chr2_1:11885049-11885068 Msa0195140:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG - chr2_1:11885240-11885259 Msa0195140:CDS 20.0%
!! AAACACTTTATCAAAGAATT+TGG + chr2_1:11885517-11885536 None:intergenic 20.0%
!! TAGAAAATGTTGTTATAGAT+TGG - chr2_1:11884915-11884934 Msa0195140:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG - chr2_1:11885049-11885068 Msa0195140:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG - chr2_1:11885240-11885259 Msa0195140:CDS 20.0%
!! AAACACTTTATCAAAGAATT+TGG + chr2_1:11885517-11885536 None:intergenic 20.0%
!! TGTTTTCATAATAATCAGCT+AGG + chr2_1:11884625-11884644 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG + chr2_1:11884741-11884760 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG + chr2_1:11884745-11884764 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG + chr2_1:11884797-11884816 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG + chr2_1:11884962-11884981 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG - chr2_1:11884959-11884978 Msa0195140:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG - chr2_1:11884962-11884981 Msa0195140:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG - chr2_1:11885064-11885083 Msa0195140:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG + chr2_1:11885217-11885236 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG + chr2_1:11885406-11885425 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG - chr2_1:11885406-11885425 Msa0195140:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG - chr2_1:11885449-11885468 Msa0195140:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG - chr2_1:11885482-11885501 Msa0195140:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG - chr2_1:11885710-11885729 Msa0195140:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG - chr2_1:11885776-11885795 Msa0195140:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG - chr2_1:11885790-11885809 Msa0195140:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG + chr2_1:11885808-11885827 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG - chr2_1:11885808-11885827 Msa0195140:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG - chr2_1:11885813-11885832 Msa0195140:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG - chr2_1:11885945-11885964 Msa0195140:CDS 25.0%
!! TGTTTTCATAATAATCAGCT+AGG + chr2_1:11884625-11884644 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG + chr2_1:11884741-11884760 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG + chr2_1:11884745-11884764 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG + chr2_1:11884797-11884816 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG + chr2_1:11884962-11884981 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG - chr2_1:11884959-11884978 Msa0195140:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG - chr2_1:11884962-11884981 Msa0195140:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG - chr2_1:11885064-11885083 Msa0195140:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG + chr2_1:11885217-11885236 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG + chr2_1:11885406-11885425 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG - chr2_1:11885406-11885425 Msa0195140:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG - chr2_1:11885449-11885468 Msa0195140:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG - chr2_1:11885482-11885501 Msa0195140:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG - chr2_1:11885710-11885729 Msa0195140:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG - chr2_1:11885776-11885795 Msa0195140:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG - chr2_1:11885790-11885809 Msa0195140:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG + chr2_1:11885808-11885827 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG - chr2_1:11885808-11885827 Msa0195140:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG - chr2_1:11885813-11885832 Msa0195140:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG - chr2_1:11885945-11885964 Msa0195140:CDS 25.0%
TGAATTCTGTAGTATCTAGT+GGG + chr2_1:11884574-11884593 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG + chr2_1:11884575-11884594 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG - chr2_1:11884581-11884600 Msa0195140:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG + chr2_1:11884680-11884699 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG + chr2_1:11884688-11884707 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG - chr2_1:11884752-11884771 Msa0195140:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG - chr2_1:11884803-11884822 Msa0195140:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG - chr2_1:11884920-11884939 Msa0195140:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG - chr2_1:11884965-11884984 Msa0195140:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG - chr2_1:11885082-11885101 Msa0195140:CDS 30.0%
!!! CTATTATATGAGCTGCTTTT+TGG + chr2_1:11885132-11885151 None:intergenic 30.0%
CAAAAAGCAGCTCATATAAT+AGG - chr2_1:11885130-11885149 Msa0195140:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG + chr2_1:11885163-11885182 None:intergenic 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG - chr2_1:11885489-11885508 Msa0195140:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG - chr2_1:11885587-11885606 Msa0195140:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG - chr2_1:11885693-11885712 Msa0195140:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG + chr2_1:11885705-11885724 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG - chr2_1:11885709-11885728 Msa0195140:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG + chr2_1:11885772-11885791 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG - chr2_1:11885868-11885887 Msa0195140:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG - chr2_1:11885873-11885892 Msa0195140:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG - chr2_1:11885958-11885977 Msa0195140:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG - chr2_1:11886013-11886032 Msa0195140:CDS 30.0%
TGAATTCTGTAGTATCTAGT+GGG + chr2_1:11884574-11884593 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG + chr2_1:11884575-11884594 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG - chr2_1:11884581-11884600 Msa0195140:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG + chr2_1:11884680-11884699 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG + chr2_1:11884688-11884707 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG - chr2_1:11884752-11884771 Msa0195140:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG - chr2_1:11884803-11884822 Msa0195140:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG - chr2_1:11884920-11884939 Msa0195140:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG - chr2_1:11884965-11884984 Msa0195140:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG - chr2_1:11885082-11885101 Msa0195140:CDS 30.0%
!!! CTATTATATGAGCTGCTTTT+TGG + chr2_1:11885132-11885151 None:intergenic 30.0%
CAAAAAGCAGCTCATATAAT+AGG - chr2_1:11885130-11885149 Msa0195140:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG + chr2_1:11885163-11885182 None:intergenic 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG - chr2_1:11885489-11885508 Msa0195140:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG - chr2_1:11885587-11885606 Msa0195140:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG - chr2_1:11885693-11885712 Msa0195140:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG + chr2_1:11885705-11885724 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG - chr2_1:11885709-11885728 Msa0195140:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG + chr2_1:11885772-11885791 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG - chr2_1:11885868-11885887 Msa0195140:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG - chr2_1:11885873-11885892 Msa0195140:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG - chr2_1:11885958-11885977 Msa0195140:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG - chr2_1:11886013-11886032 Msa0195140:CDS 30.0%
!! AGTTTGGTTCTACTTGACTT+AGG + chr2_1:11884664-11884683 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG + chr2_1:11884716-11884735 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG + chr2_1:11884731-11884750 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG - chr2_1:11884765-11884784 Msa0195140:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG + chr2_1:11884772-11884791 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG - chr2_1:11884842-11884861 Msa0195140:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG - chr2_1:11884867-11884886 Msa0195140:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+CGG - chr2_1:11884968-11884987 Msa0195140:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG - chr2_1:11884998-11885017 Msa0195140:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG - chr2_1:11885006-11885025 Msa0195140:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG - chr2_1:11885007-11885026 Msa0195140:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG - chr2_1:11885152-11885171 Msa0195140:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG - chr2_1:11885153-11885172 Msa0195140:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG + chr2_1:11885162-11885181 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG + chr2_1:11885174-11885193 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG + chr2_1:11885268-11885287 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG - chr2_1:11885268-11885287 Msa0195140:CDS 35.0%
! ACATTGCACAATTTTCCTAC+CGG + chr2_1:11885319-11885338 None:intergenic 35.0%
TCGCGAAAGATTATGGAATT+TGG - chr2_1:11885338-11885357 Msa0195140:CDS 35.0%
CGCGAAAGATTATGGAATTT+GGG - chr2_1:11885339-11885358 Msa0195140:CDS 35.0%
AACGACGAATTCTGAGTATT+TGG - chr2_1:11885540-11885559 Msa0195140:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG - chr2_1:11885570-11885589 Msa0195140:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG - chr2_1:11885649-11885668 Msa0195140:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG - chr2_1:11885665-11885684 Msa0195140:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG - chr2_1:11885723-11885742 Msa0195140:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG - chr2_1:11885823-11885842 Msa0195140:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG - chr2_1:11885964-11885983 Msa0195140:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG - chr2_1:11886059-11886078 Msa0195140:CDS 35.0%
!! AGTTTGGTTCTACTTGACTT+AGG + chr2_1:11884664-11884683 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG + chr2_1:11884716-11884735 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG + chr2_1:11884731-11884750 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG - chr2_1:11884765-11884784 Msa0195140:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG + chr2_1:11884772-11884791 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG - chr2_1:11884842-11884861 Msa0195140:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG - chr2_1:11884867-11884886 Msa0195140:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+CGG - chr2_1:11884968-11884987 Msa0195140:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG - chr2_1:11884998-11885017 Msa0195140:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG - chr2_1:11885006-11885025 Msa0195140:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG - chr2_1:11885007-11885026 Msa0195140:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG - chr2_1:11885152-11885171 Msa0195140:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG - chr2_1:11885153-11885172 Msa0195140:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG + chr2_1:11885162-11885181 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG + chr2_1:11885174-11885193 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG + chr2_1:11885268-11885287 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG - chr2_1:11885268-11885287 Msa0195140:CDS 35.0%
! ACATTGCACAATTTTCCTAC+CGG + chr2_1:11885319-11885338 None:intergenic 35.0%
TCGCGAAAGATTATGGAATT+TGG - chr2_1:11885338-11885357 Msa0195140:CDS 35.0%
CGCGAAAGATTATGGAATTT+GGG - chr2_1:11885339-11885358 Msa0195140:CDS 35.0%
AACGACGAATTCTGAGTATT+TGG - chr2_1:11885540-11885559 Msa0195140:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG - chr2_1:11885570-11885589 Msa0195140:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG - chr2_1:11885649-11885668 Msa0195140:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG - chr2_1:11885665-11885684 Msa0195140:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG - chr2_1:11885723-11885742 Msa0195140:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG - chr2_1:11885823-11885842 Msa0195140:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG - chr2_1:11885964-11885983 Msa0195140:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG - chr2_1:11886059-11886078 Msa0195140:CDS 35.0%
! GGATTTGAAGGTGCAAAAGA+AGG + chr2_1:11884704-11884723 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG + chr2_1:11884725-11884744 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG + chr2_1:11884773-11884792 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG + chr2_1:11884902-11884921 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG + chr2_1:11885014-11885033 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG + chr2_1:11885308-11885327 None:intergenic 40.0%
TGCAATGTCGCGAAAGATTA+TGG - chr2_1:11885331-11885350 Msa0195140:CDS 40.0%
AATACAAGCACTACCAGCAT+AGG + chr2_1:11885380-11885399 None:intergenic 40.0%
GGTTGATTACAAAGATTGGC+AGG - chr2_1:11885591-11885610 Msa0195140:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG - chr2_1:11885714-11885733 Msa0195140:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG - chr2_1:11885731-11885750 Msa0195140:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG - chr2_1:11885883-11885902 Msa0195140:CDS 40.0%
TTTGTGATTAGGTGTGCAGT+TGG - chr2_1:11886024-11886043 Msa0195140:CDS 40.0%
AGTTGGAGCAACTTTAACAG+AGG - chr2_1:11886041-11886060 Msa0195140:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG - chr2_1:11886058-11886077 Msa0195140:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG - chr2_1:11886064-11886083 Msa0195140:CDS 40.0%
! GGATTTGAAGGTGCAAAAGA+AGG + chr2_1:11884704-11884723 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG + chr2_1:11884725-11884744 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG + chr2_1:11884773-11884792 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG + chr2_1:11884902-11884921 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG + chr2_1:11885014-11885033 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG + chr2_1:11885308-11885327 None:intergenic 40.0%
TGCAATGTCGCGAAAGATTA+TGG - chr2_1:11885331-11885350 Msa0195140:CDS 40.0%
AATACAAGCACTACCAGCAT+AGG + chr2_1:11885380-11885399 None:intergenic 40.0%
GGTTGATTACAAAGATTGGC+AGG - chr2_1:11885591-11885610 Msa0195140:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG - chr2_1:11885714-11885733 Msa0195140:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG - chr2_1:11885731-11885750 Msa0195140:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG - chr2_1:11885883-11885902 Msa0195140:CDS 40.0%
TTTGTGATTAGGTGTGCAGT+TGG - chr2_1:11886024-11886043 Msa0195140:CDS 40.0%
AGTTGGAGCAACTTTAACAG+AGG - chr2_1:11886041-11886060 Msa0195140:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG - chr2_1:11886058-11886077 Msa0195140:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG - chr2_1:11886064-11886083 Msa0195140:CDS 40.0%
GGTTCTACTTGACTTAGGAC+AGG + chr2_1:11884659-11884678 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG - chr2_1:11884857-11884876 Msa0195140:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG - chr2_1:11885297-11885316 Msa0195140:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG + chr2_1:11885627-11885646 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG - chr2_1:11885629-11885648 Msa0195140:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG - chr2_1:11885990-11886009 Msa0195140:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG - chr2_1:11885997-11886016 Msa0195140:CDS 45.0%
GGTTCTACTTGACTTAGGAC+AGG + chr2_1:11884659-11884678 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG - chr2_1:11884857-11884876 Msa0195140:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG - chr2_1:11885297-11885316 Msa0195140:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG + chr2_1:11885627-11885646 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG - chr2_1:11885629-11885648 Msa0195140:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG - chr2_1:11885990-11886009 Msa0195140:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG - chr2_1:11885997-11886016 Msa0195140:CDS 45.0%
CATCAAGTGGTAGCACAGCA+GGG - chr2_1:11884816-11884835 Msa0195140:CDS 50.0%
!!! CTTTTTAAAGGTGGTGGCGG+CGG - chr2_1:11884971-11884990 Msa0195140:CDS 50.0%
CATGTTGATGCTGCCTATGC+TGG - chr2_1:11885364-11885383 Msa0195140:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG - chr2_1:11885624-11885643 Msa0195140:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG - chr2_1:11886068-11886087 Msa0195140:CDS 50.0%
CATCAAGTGGTAGCACAGCA+GGG - chr2_1:11884816-11884835 Msa0195140:CDS 50.0%
!!! CTTTTTAAAGGTGGTGGCGG+CGG - chr2_1:11884971-11884990 Msa0195140:CDS 50.0%
CATGTTGATGCTGCCTATGC+TGG - chr2_1:11885364-11885383 Msa0195140:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG - chr2_1:11885624-11885643 Msa0195140:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG - chr2_1:11886068-11886087 Msa0195140:CDS 50.0%
CCTGCTGTGCTACCACTTGA+TGG + chr2_1:11884818-11884837 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG - chr2_1:11884815-11884834 Msa0195140:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG - chr2_1:11884824-11884843 Msa0195140:CDS 55.0%
!! GGTGGCGGCGGTGTTTTATT+AGG - chr2_1:11884983-11885002 Msa0195140:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG - chr2_1:11885301-11885320 Msa0195140:CDS 55.0%
CCTGCTGTGCTACCACTTGA+TGG + chr2_1:11884818-11884837 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG - chr2_1:11884815-11884834 Msa0195140:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG - chr2_1:11884824-11884843 Msa0195140:CDS 55.0%
!! GGTGGCGGCGGTGTTTTATT+AGG - chr2_1:11884983-11885002 Msa0195140:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG - chr2_1:11885301-11885320 Msa0195140:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11884566 11886149 11884566 ID=Msa0195140;Name=Msa0195140
chr2_1 mRNA 11884566 11886149 11884566 ID=Msa0195140-mRNA-1;Parent=Msa0195140;Name=Msa0195140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|527
chr2_1 exon 11884566 11886149 11884566 ID=Msa0195140-mRNA-1:exon:5222;Parent=Msa0195140-mRNA-1
chr2_1 CDS 11884566 11886149 11884566 ID=Msa0195140-mRNA-1:cds;Parent=Msa0195140-mRNA-1
Gene Sequence

>Msa0195140

ATGAACCCACTAGATACTACAGAATTCAAGAAACAAGGTCACATGATCATTGATTTCCTAGCTGATTATTATGAAAACATTTCAAACTATCCTGTCCTAAGTCAAGTAGAACCAAACTACCTCAAAAAACTGTTACCTTCTTTTGCACCTTCAAATCCTGAACCTATTGAAACCATCCTTGAAGATTATCAAAAACACATAATCCCAGGTATAACACATTGGCAAAGTCCTAATTACTTTGCTTATTTTCCATCAAGTGGTAGCACAGCAGGGTTCTTAGGAGAAATGTTAAGCACTGGATTGAACGTTGTTGGATTTAACTGGATTTCATCACCAGCTGCTACAGAACTAGAAAATGTTGTTATAGATTGGCTTGGTGAAATTTTGAATCTTCCTAAGAGTTTTCTTTTTAAAGGTGGTGGCGGCGGTGTTTTATTAGGTACAACCTGTGAAGGTATTTTGGGAACTCTAGTTGTTGCTAGAGATAAAATTCTTAGCAAAATTGGTAGTGAAAATGTAGGTAAACTTGTTGTTTATGGTTCTGATCAAACACATTGTGCAGTCCAAAAAGCAGCTCATATAATAGGAATAGACCCGAAAAATTTCCGGGCTATTAAGACTGATAAGTTAAATTCATTCACTTTGTTGCCTGAATCATTGTTATCAACAATACAAAATGATTTGAAAAATGGTTTGGTTCCTTGCTTTCTTTGTGTAACTGTTGGCACAACTTCAACGACCGCAATTGATCCGGTAGGAAAATTGTGCAATGTCGCGAAAGATTATGGAATTTGGGTTCATGTTGATGCTGCCTATGCTGGTAGTGCTTGTATTTGTCCTGAGTTTAGATATTTGATTGATGGTGTTGAAGATGCTGATTCTTTTAGTCTTAATGCTCATAAATGGTTTTTGACTAATTTAGATTGTTGTTGTCTTTGGTTAAAGGATCCAAATTCTTTGATAAAGTGTTTGTCAACGACGAATTCTGAGTATTTGGAGAATAGTGCTTCTGATTCAAAACAAGTGGTTGATTACAAAGATTGGCAGGTAACTTTAAGCCGAAGATTTCGCGCTTTGAAGGTATGGTTTGTTCTTAGAAGCTATGGTGTTGATAATCTTAGGAATTTTTTAAGGAACCATGTTGAAATGGCTAAAACTTTTGAAGGGTTGGTGAAAATGGACAAAAGGTTTGAAATTGTTGTACCTAGAAAACTTTCTCTTGTTTGTTTTAGGATTTTACCATATGGTAAAAAAGTTGCTAATGGAAAGGTAACAAATGGTGATGTTAAACTAATTAGTAATGAAGATGTTATTGTTGCTAATGGAAAGGTGACAAATGGAGAAGCTAAATTAATTAGTAGTGAAGATGTTATTGCTAATGAAATTAATCGTAAGTTGTTGGATTCTATCAATGGTTCAGGTGATGTGTACATGACTCATGCTGTGGTTGAAGGAGTTTTTGTGATTAGGTGTGCAGTTGGAGCAACTTTAACAGAGGAAATGCATGTGATTAGGGCTTGGAAGGTTGTACAAGAACATGCAGATGCTATTCTAAAAGATAAAAAGAGTTGCATATTTGTCTAG

Protein sequence

>Msa0195140

MNPLDTTEFKKQGHMIIDFLADYYENISNYPVLSQVEPNYLKKLLPSFAPSNPEPIETILEDYQKHIIPGITHWQSPNYFAYFPSSGSTAGFLGEMLSTGLNVVGFNWISSPAATELENVVIDWLGEILNLPKSFLFKGGGGGVLLGTTCEGILGTLVVARDKILSKIGSENVGKLVVYGSDQTHCAVQKAAHIIGIDPKNFRAIKTDKLNSFTLLPESLLSTIQNDLKNGLVPCFLCVTVGTTSTTAIDPVGKLCNVAKDYGIWVHVDAAYAGSACICPEFRYLIDGVEDADSFSLNAHKWFLTNLDCCCLWLKDPNSLIKCLSTTNSEYLENSASDSKQVVDYKDWQVTLSRRFRALKVWFVLRSYGVDNLRNFLRNHVEMAKTFEGLVKMDKRFEIVVPRKLSLVCFRILPYGKKVANGKVTNGDVKLISNEDVIVANGKVTNGEAKLISSEDVIANEINRKLLDSINGSGDVYMTHAVVEGVFVIRCAVGATLTEEMHVIRAWKVVQEHADAILKDKKSCIFV*