AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244220 MtrunA17_Chr8g0359081 94.241 191 10 1 13 203 23 212 1.30e-126 355
Msa1244220 MtrunA17_Chr4g0049401 45.600 125 63 2 79 201 65 186 7.26e-34 119
Msa1244220 MtrunA17_Chr2g0286921 43.200 125 66 2 79 201 41 162 4.48e-31 111
Msa1244220 MtrunA17_Chr2g0286931 40.164 122 68 2 82 201 13 131 1.30e-26 99.4
Msa1244220 MtrunA17_Chr2g0286901 40.594 101 51 3 105 201 55 150 4.26e-19 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244220 AT1G53670.1 80.159 126 25 0 74 199 69 194 6.27e-80 237
Msa1244220 AT1G53670.2 75.397 126 24 1 74 199 69 187 3.45e-73 220
Msa1244220 AT4G04800.1 44.000 125 65 2 79 201 50 171 4.54e-33 117
Msa1244220 AT4G04830.1 40.945 127 70 2 79 203 11 134 5.01e-31 110
Msa1244220 AT4G21840.1 44.262 122 63 2 80 199 18 136 6.25e-31 110
Msa1244220 AT4G21830.2 44.262 122 63 2 80 199 16 134 7.48e-31 110
Msa1244220 AT4G21830.1 44.262 122 63 2 80 199 19 137 1.61e-30 109
Msa1244220 AT4G21860.4 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1244220 AT4G21860.1 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1244220 AT4G21860.3 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1244220 AT4G21850.1 43.443 122 64 2 80 199 19 137 1.05e-29 107
Msa1244220 AT4G04810.1 40.157 127 71 2 79 203 11 134 2.08e-28 104
Msa1244220 AT4G04840.1 39.024 123 70 3 79 199 27 146 4.65e-28 103
Msa1244220 AT4G04830.2 36.220 127 66 3 79 203 11 124 6.89e-23 89.7
Msa1244220 AT4G21850.2 43.902 82 45 1 80 160 19 100 1.39e-17 75.5
Msa1244220 AT4G21860.2 43.590 78 44 0 66 143 63 140 3.88e-17 76.3
Msa1244220 AT4G04810.2 45.455 66 36 0 79 144 11 76 7.65e-16 70.9

Find 52 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATCAAATTTGTGAATT+AGG 0.095369 8_2:+31918691 None:intergenic
ATAAAGTACTTACTCAAATA+AGG 0.239315 8_2:+31915931 None:intergenic
ACTTCCTTGGTTTGAGCTTA+AGG 0.254966 8_2:+31915501 None:intergenic
AGAATCAAATTTGTGAATTA+GGG 0.264145 8_2:+31918692 None:intergenic
CAGATGGTTTAATATTAAAA+TGG 0.274102 8_2:-31915449 Msa1244220:three_prime_UTR
CTTCCTTGGTTTGAGCTTAA+GGG 0.347472 8_2:+31915502 None:intergenic
CTTACAAACTTATATTAAAC+AGG 0.351555 8_2:+31915200 None:intergenic
CAAAACTTTCTTCTTCAATC+CGG 0.352314 8_2:-31918623 Msa1244220:CDS
TTCTGTAGTGTTTGCGTCGT+TGG 0.357559 8_2:+31918572 None:intergenic
CGTCGTTTAAGAATCGGATT+TGG 0.366341 8_2:-31918770 Msa1244220:five_prime_UTR
AAATTTGTGAATTAGGGTAT+TGG 0.378091 8_2:+31918698 None:intergenic
AATTTGTGAATTAGGGTATT+GGG 0.379174 8_2:+31918699 None:intergenic
CTTAAAGATTTATAATCAAC+AGG 0.401442 8_2:+31917087 None:intergenic
ATGGTAAGTCCCTTCAGTTT+TGG 0.402394 8_2:+31915973 None:intergenic
TAAGAATCGGATTTGGAGAA+TGG 0.409891 8_2:-31918763 Msa1244220:exon
ACCAAGTTTAATAGTGGAAC+TGG 0.412251 8_2:-31915787 Msa1244220:CDS
TTCTTCTTCAATCCGGGCAA+TGG 0.415084 8_2:-31918616 Msa1244220:CDS
ATTTGACTATCTTACTTCCT+TGG 0.431236 8_2:+31915488 None:intergenic
CCATCTTATTACCAGCCAAT+TGG 0.432412 8_2:-31915760 Msa1244220:CDS
TCTTCTTCAATCCGGGCAAT+GGG 0.433463 8_2:-31918615 Msa1244220:CDS
TCAAAAGCTTAAACAACGTT+GGG 0.436753 8_2:+31915228 None:intergenic
AAACAGCACAGAGAACTTCT+TGG 0.444117 8_2:+31915689 None:intergenic
AAAACTTTCTTCTTCAATCC+GGG 0.445114 8_2:-31918622 Msa1244220:CDS
GAATTTGTGCAGCAGCTGAT+AGG 0.447579 8_2:+31918724 None:intergenic
TAAAGTACTTACTCAAATAA+GGG 0.456545 8_2:+31915932 None:intergenic
GAAAACGTTACTGTATCAAC+AGG 0.465505 8_2:-31915618 Msa1244220:intron
CCAATTGGCTGGTAATAAGA+TGG 0.475719 8_2:+31915760 None:intergenic
GAAACCCGTCGTTTAAGAAT+CGG 0.481333 8_2:-31918776 Msa1244220:five_prime_UTR
TTCAAAAGCTTAAACAACGT+TGG 0.485018 8_2:+31915227 None:intergenic
AACACTACAGAAATTCAATC+AGG 0.493813 8_2:-31918561 Msa1244220:intron
TCATCTACCAAGTTTAATAG+TGG 0.496314 8_2:-31915793 Msa1244220:CDS
ACCAGTTCCACTATTAAACT+TGG 0.499953 8_2:+31915786 None:intergenic
AGCACAGAGAACTTCTTGGC+GGG 0.512905 8_2:+31915693 None:intergenic
AATCTTTAAGTGATGCAGAA+TGG 0.513509 8_2:-31917074 Msa1244220:CDS
CAAATCCGATTCTTAAACGA+CGG 0.536295 8_2:+31918771 None:intergenic
TCACCCAGTGAAAGCTCTCT+CGG 0.541253 8_2:+31917002 None:intergenic
GGAACCGAGAGAGCTTTCAC+TGG 0.542234 8_2:-31917006 Msa1244220:CDS
GATGATGGCCCTCCACCCAC+AGG 0.547765 8_2:-31915640 Msa1244220:CDS
AAATCCGATTCTTAAACGAC+GGG 0.554268 8_2:+31918772 None:intergenic
AAGCTGAAGAGCCCATTGCC+CGG 0.557701 8_2:+31918604 None:intergenic
GCTGTTTGTGATGCTCATCT+CGG 0.566492 8_2:-31915673 Msa1244220:CDS
TACTGGAATACCAAAACTGA+AGG 0.570093 8_2:-31915983 Msa1244220:CDS
AGTAACATAAAATTGTTCAT+CGG 0.572643 8_2:+31917038 None:intergenic
AGTTTAATAGTGGAACTGGT+TGG 0.589954 8_2:-31915783 Msa1244220:CDS
CAGCACAGAGAACTTCTTGG+CGG 0.609123 8_2:+31915692 None:intergenic
GCACAGAGAACTTCTTGGCG+GGG 0.628010 8_2:+31915694 None:intergenic
GTGTGTCACAACATATGCAA+TGG 0.629248 8_2:+31915954 None:intergenic
ATGTGTCACTCAGAAGCAGA+TGG 0.630866 8_2:-31915465 Msa1244220:three_prime_UTR
CTTCCCTTAAGCTCAAACCA+AGG 0.648370 8_2:-31915505 Msa1244220:CDS
ACTGGAATACCAAAACTGAA+GGG 0.657265 8_2:-31915982 Msa1244220:CDS
GAACCGAGAGAGCTTTCACT+GGG 0.657323 8_2:-31917005 Msa1244220:intron
AGTTTGGTAAGAAAACGCGA+TGG 0.728635 8_2:+31918654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAATTTTAATTTTATG+AGG - chr8_2:31915210-31915229 Msa1244220:three_prime_UTR 10.0%
!!! TGTTTTTTTAATTCATTTTA+GGG - chr8_2:31918000-31918019 Msa1244220:intron 10.0%
!! TATTTATTTAACCAAATATA+TGG - chr8_2:31918148-31918167 Msa1244220:intron 10.0%
!!! TTTCACATTTTATAAAAATT+TGG + chr8_2:31918679-31918698 None:intergenic 10.0%
!! ATCAAAATATTAAGTTATGT+TGG + chr8_2:31915606-31915625 None:intergenic 15.0%
!! GAAAAAAAAAAATATCTAGT+GGG - chr8_2:31915663-31915682 Msa1244220:CDS 15.0%
!! AAATTGATTATTCAATTTGT+TGG - chr8_2:31915960-31915979 Msa1244220:CDS 15.0%
!! TAATAAAGAGATTGATATAT+AGG - chr8_2:31916799-31916818 Msa1244220:intron 15.0%
!! TTTATTTCCTCAAATTATTA+CGG - chr8_2:31917176-31917195 Msa1244220:intron 15.0%
!! TTAAATAGACATAAAAATCA+AGG + chr8_2:31917297-31917316 None:intergenic 15.0%
!! CCTTTAATGTAAAATAAATT+TGG + chr8_2:31917352-31917371 None:intergenic 15.0%
!!! CCAAATTTATTTTACATTAA+AGG - chr8_2:31917349-31917368 Msa1244220:intron 15.0%
!!! CTGTTTTTTTAATTCATTTT+AGG - chr8_2:31917999-31918018 Msa1244220:intron 15.0%
!! AGAATCAAATTTGTGAATTA+GGG + chr8_2:31915319-31915338 None:intergenic 20.0%
!! TAGAATCAAATTTGTGAATT+AGG + chr8_2:31915320-31915339 None:intergenic 20.0%
!! AGTAAAGAAAAAAAAAAGTG+AGG + chr8_2:31915496-31915515 None:intergenic 20.0%
!!! ATATTTTGATAGAAACAAAC+TGG - chr8_2:31915616-31915635 Msa1244220:intron 20.0%
!! GGAAAAAAAAAAATATCTAG+TGG - chr8_2:31915662-31915681 Msa1244220:CDS 20.0%
!! AACAAAATTGTACAAGAAAA+TGG - chr8_2:31916010-31916029 Msa1244220:intron 20.0%
!! AAAATGAAAATAGGAGAAAT+TGG - chr8_2:31916070-31916089 Msa1244220:intron 20.0%
!! CTTAAAGATTTATAATCAAC+AGG + chr8_2:31916924-31916943 None:intergenic 20.0%
!! AGTAACATAAAATTGTTCAT+CGG + chr8_2:31916973-31916992 None:intergenic 20.0%
!!! ATGAACAATTTTATGTTACT+CGG - chr8_2:31916973-31916992 Msa1244220:intron 20.0%
!! TCCAAGTTCTATATTTAAAA+CGG - chr8_2:31917708-31917727 Msa1244220:intron 20.0%
!!! TGTATCAAGTTTTTCATATT+GGG + chr8_2:31917808-31917827 None:intergenic 20.0%
!!! TAAAGTACTTACTCAAATAA+GGG + chr8_2:31918079-31918098 None:intergenic 20.0%
!!! ATAAAGTACTTACTCAAATA+AGG + chr8_2:31918080-31918099 None:intergenic 20.0%
!! CAGATGGTTTAATATTAAAA+TGG - chr8_2:31918559-31918578 Msa1244220:intron 20.0%
!! CTTACAAACTTATATTAAAC+AGG + chr8_2:31918811-31918830 None:intergenic 20.0%
!! AATTTGTGAATTAGGGTATT+GGG + chr8_2:31915312-31915331 None:intergenic 25.0%
! AAATTTGTGAATTAGGGTAT+TGG + chr8_2:31915313-31915332 None:intergenic 25.0%
!! TTGATTCTAAACTTTTGTTG+TGG - chr8_2:31915331-31915350 Msa1244220:three_prime_UTR 25.0%
!!! AAGTTTTGAAGAAGAAAGTT+TGG + chr8_2:31915373-31915392 None:intergenic 25.0%
! TCAAGATTGATAAGTTTAGA+AGG - chr8_2:31915641-31915660 Msa1244220:CDS 25.0%
! ACACCCGAAAAAATATTATT+AGG - chr8_2:31915777-31915796 Msa1244220:CDS 25.0%
!!! CCTCCTAATAATATTTTTTC+GGG + chr8_2:31915783-31915802 None:intergenic 25.0%
!!! CCCTCCTAATAATATTTTTT+CGG + chr8_2:31915784-31915803 None:intergenic 25.0%
! CCGAAAAAATATTATTAGGA+GGG - chr8_2:31915781-31915800 Msa1244220:CDS 25.0%
! CGAAAAAATATTATTAGGAG+GGG - chr8_2:31915782-31915801 Msa1244220:CDS 25.0%
! GAAAAAATATTATTAGGAGG+GGG - chr8_2:31915783-31915802 Msa1244220:CDS 25.0%
! AAATTAAATACTCTGCTTGT+AGG - chr8_2:31915806-31915825 Msa1244220:intron 25.0%
!! TTGAATGATCATTGTTTTCA+AGG - chr8_2:31915882-31915901 Msa1244220:intron 25.0%
! ACTGAAGTGAAAATGAAAAT+AGG - chr8_2:31916061-31916080 Msa1244220:intron 25.0%
!! AAAGTTGTATGTTGGTTATA+AGG - chr8_2:31916446-31916465 Msa1244220:intron 25.0%
! AAGAGATTGATATATAGGAA+CGG - chr8_2:31916804-31916823 Msa1244220:intron 25.0%
!! ATTTTATGTTACTCGGAAAA+AGG - chr8_2:31916980-31916999 Msa1244220:intron 25.0%
!! TTTTATGTTACTCGGAAAAA+GGG - chr8_2:31916981-31917000 Msa1244220:intron 25.0%
!! CCAAGTTCTATATTTAAAAC+GGG - chr8_2:31917709-31917728 Msa1244220:intron 25.0%
!! TTCTATATTTAAAACGGGAA+AGG - chr8_2:31917714-31917733 Msa1244220:intron 25.0%
!! GTGTATCAAGTTTTTCATAT+TGG + chr8_2:31917809-31917828 None:intergenic 25.0%
! AACTTTGTCACAAGAATATA+TGG + chr8_2:31917911-31917930 None:intergenic 25.0%
! TTATAAGTTCAAGATGATTC+AGG + chr8_2:31918174-31918193 None:intergenic 25.0%
!! GATTTCACATTTTTACCAAT+TGG + chr8_2:31918266-31918285 None:intergenic 25.0%
!! TAAAGAATCACTTGTTGAAT+TGG - chr8_2:31918413-31918432 Msa1244220:intron 25.0%
!! AAAGAATCACTTGTTGAATT+GGG - chr8_2:31918414-31918433 Msa1244220:intron 25.0%
!!! GTCTAAAAGTTTGTTTGTTT+TGG - chr8_2:31918467-31918486 Msa1244220:intron 25.0%
!! GATCAATTTACAGATTTTGT+CGG + chr8_2:31918588-31918607 None:intergenic 25.0%
CAAAACTTTCTTCTTCAATC+CGG - chr8_2:31915385-31915404 Msa1244220:three_prime_UTR 30.0%
AAAACTTTCTTCTTCAATCC+GGG - chr8_2:31915386-31915405 Msa1244220:three_prime_UTR 30.0%
AACACTACAGAAATTCAATC+AGG - chr8_2:31915447-31915466 Msa1244220:three_prime_UTR 30.0%
TCAGGTATTCATTATTCTCT+TGG - chr8_2:31915465-31915484 Msa1244220:three_prime_UTR 30.0%
CAGGTATTCATTATTCTCTT+GGG - chr8_2:31915466-31915485 Msa1244220:three_prime_UTR 30.0%
GTCAGATGATACTTACTTAA+CGG - chr8_2:31915700-31915719 Msa1244220:CDS 30.0%
CCCGAAAAAATATTATTAGG+AGG - chr8_2:31915780-31915799 Msa1244220:CDS 30.0%
!! TATTCAATTTGTTGGCTTTG+TGG - chr8_2:31915968-31915987 Msa1244220:CDS 30.0%
! ATTGGAGTGGTAAATTGTTT+TGG - chr8_2:31916312-31916331 Msa1244220:intron 30.0%
! TAACCAACATACAACTTTTC+AGG + chr8_2:31916444-31916463 None:intergenic 30.0%
!! CTTGCTGTTGAAAATTGAAT+GGG - chr8_2:31916562-31916581 Msa1244220:intron 30.0%
! TTGCTGTTGAAAATTGAATG+GGG - chr8_2:31916563-31916582 Msa1244220:intron 30.0%
TCTAAACGTTACATGTATGT+TGG + chr8_2:31916605-31916624 None:intergenic 30.0%
AACATACATGTAACGTTTAG+AGG - chr8_2:31916604-31916623 Msa1244220:intron 30.0%
ACATACATGTAACGTTTAGA+GGG - chr8_2:31916605-31916624 Msa1244220:intron 30.0%
AATCTTTAAGTGATGCAGAA+TGG - chr8_2:31916934-31916953 Msa1244220:intron 30.0%
AACACACAATCATTGAAAGA+AGG - chr8_2:31917381-31917400 Msa1244220:intron 30.0%
TGTTCATTGTATTTCACTTG+TGG - chr8_2:31917579-31917598 Msa1244220:intron 30.0%
TACCTGAAATGAAAGATACA+AGG - chr8_2:31917615-31917634 Msa1244220:intron 30.0%
ATCCTTGTATCTTTCATTTC+AGG + chr8_2:31917620-31917639 None:intergenic 30.0%
!! CCCGTTTTAAATATAGAACT+TGG + chr8_2:31917712-31917731 None:intergenic 30.0%
!! CCTTACAAAATTGACTTGAA+AGG + chr8_2:31917775-31917794 None:intergenic 30.0%
!! CCTTTCAAGTCAATTTTGTA+AGG - chr8_2:31917772-31917791 Msa1244220:intron 30.0%
! TTGGTGTCCATATATGATTA+AGG - chr8_2:31917867-31917886 Msa1244220:intron 30.0%
TGGTGTCCATATATGATTAA+GGG - chr8_2:31917868-31917887 Msa1244220:intron 30.0%
ACATTGCCCTTAATCATATA+TGG + chr8_2:31917877-31917896 None:intergenic 30.0%
ATATGATTAAGGGCAATGTA+AGG - chr8_2:31917878-31917897 Msa1244220:intron 30.0%
!! TAATTCATTTTAGGGAGTAC+TGG - chr8_2:31918008-31918027 Msa1244220:intron 30.0%
ATTAAACTTGGTAGATGATC+TGG + chr8_2:31918213-31918232 None:intergenic 30.0%
TCATCTACCAAGTTTAATAG+TGG - chr8_2:31918215-31918234 Msa1244220:intron 30.0%
ATTTGACTATCTTACTTCCT+TGG + chr8_2:31918523-31918542 None:intergenic 30.0%
TCAAAAGCTTAAACAACGTT+GGG + chr8_2:31918783-31918802 None:intergenic 30.0%
TTCAAAAGCTTAAACAACGT+TGG + chr8_2:31918784-31918803 None:intergenic 30.0%
AAATCCGATTCTTAAACGAC+GGG + chr8_2:31915239-31915258 None:intergenic 35.0%
CAAATCCGATTCTTAAACGA+CGG + chr8_2:31915240-31915259 None:intergenic 35.0%
TAAGAATCGGATTTGGAGAA+TGG - chr8_2:31915245-31915264 Msa1244220:intron 35.0%
ATTACCAGAGTCATTTCCTT+GGG - chr8_2:31915734-31915753 Msa1244220:CDS 35.0%
!! ATTGTTTTCAAGGTTGTGTG+AGG - chr8_2:31915892-31915911 Msa1244220:intron 35.0%
AATTGTACAAGAAAATGGCG+AGG - chr8_2:31916015-31916034 Msa1244220:intron 35.0%
ATTGTACAAGAAAATGGCGA+GGG - chr8_2:31916016-31916035 Msa1244220:intron 35.0%
CTCTTCAGACACAACATTAA+GGG + chr8_2:31916110-31916129 None:intergenic 35.0%
ACTCTTCAGACACAACATTA+AGG + chr8_2:31916111-31916130 None:intergenic 35.0%
!!! ACAACTTTTCAGGTTCATGA+TGG + chr8_2:31916434-31916453 None:intergenic 35.0%
GAACCTGAAAAGTTGTATGT+TGG - chr8_2:31916438-31916457 Msa1244220:intron 35.0%
! TATGTTGGTTATAAGGCTGA+TGG - chr8_2:31916453-31916472 Msa1244220:intron 35.0%
!! GCTTGCTGTTGAAAATTGAA+TGG - chr8_2:31916561-31916580 Msa1244220:intron 35.0%
CATACATGTAACGTTTAGAG+GGG - chr8_2:31916606-31916625 Msa1244220:intron 35.0%
!!! CTCTATGCTATTTTCAGTGA+TGG - chr8_2:31916654-31916673 Msa1244220:intron 35.0%
CGATCGATATATATGTGCTT+TGG - chr8_2:31916854-31916873 Msa1244220:intron 35.0%
ACAGAAAGAAGTTGTTGGAT+TGG + chr8_2:31916884-31916903 None:intergenic 35.0%
AAAGCACAGAAAGAAGTTGT+TGG + chr8_2:31916889-31916908 None:intergenic 35.0%
CAAAGGTCCGTAATAATTTG+AGG + chr8_2:31917186-31917205 None:intergenic 35.0%
CTCAAATTATTACGGACCTT+TGG - chr8_2:31917184-31917203 Msa1244220:intron 35.0%
!! GATAACGGACATAATACCAA+AGG + chr8_2:31917203-31917222 None:intergenic 35.0%
TGAGTGATAAGCAAGTCAAA+AGG + chr8_2:31917262-31917281 None:intergenic 35.0%
GAACAAAACTGCAATCAATG+AGG + chr8_2:31917420-31917439 None:intergenic 35.0%
!!! TGCAGTTTTGTTCACAAATG+TGG - chr8_2:31917427-31917446 Msa1244220:intron 35.0%
!!! AGTTTTCTAGTTCTCACCAT+TGG - chr8_2:31917485-31917504 Msa1244220:intron 35.0%
GTGACATCTTCAACTAATTG+TGG + chr8_2:31917549-31917568 None:intergenic 35.0%
!!! GAGTTAGTTTTGTGTGCATT+TGG - chr8_2:31917835-31917854 Msa1244220:intron 35.0%
!! GTGCATTTGGCTTTAATACT+TGG - chr8_2:31917848-31917867 Msa1244220:intron 35.0%
AGTTTACTTCTCTACCATGT+TGG - chr8_2:31917927-31917946 Msa1244220:intron 35.0%
! ATCTCTTTAGAGAACCAACA+TGG + chr8_2:31917944-31917963 None:intergenic 35.0%
! GGTTCTCTAAAGAGATATTG+TGG - chr8_2:31917948-31917967 Msa1244220:intron 35.0%
TACTGGAATACCAAAACTGA+AGG - chr8_2:31918025-31918044 Msa1244220:intron 35.0%
ACTGGAATACCAAAACTGAA+GGG - chr8_2:31918026-31918045 Msa1244220:intron 35.0%
GATGATTCAGGCCATATATT+TGG + chr8_2:31918162-31918181 None:intergenic 35.0%
! ACCAAGTTTAATAGTGGAAC+TGG - chr8_2:31918221-31918240 Msa1244220:intron 35.0%
ACCAGTTCCACTATTAAACT+TGG + chr8_2:31918225-31918244 None:intergenic 35.0%
! AGTTTAATAGTGGAACTGGT+TGG - chr8_2:31918225-31918244 Msa1244220:intron 35.0%
! TCACATTTTTACCAATTGGC+TGG + chr8_2:31918262-31918281 None:intergenic 35.0%
! ATACAGTAACGTTTTCCTGT+GGG + chr8_2:31918386-31918405 None:intergenic 35.0%
GAAAACGTTACTGTATCAAC+AGG - chr8_2:31918390-31918409 Msa1244220:intron 35.0%
AGACAAATGTGAGCTTATAC+AGG + chr8_2:31918451-31918470 None:intergenic 35.0%
TAGCATTACGAACTTACCAT+TGG - chr8_2:31918751-31918770 Msa1244220:exon 35.0%
GAAACCCGTCGTTTAAGAAT+CGG - chr8_2:31915232-31915251 Msa1244220:three_prime_UTR 40.0%
CGTCGTTTAAGAATCGGATT+TGG - chr8_2:31915238-31915257 Msa1244220:intron 40.0%
AGTTTGGTAAGAAAACGCGA+TGG + chr8_2:31915357-31915376 None:intergenic 40.0%
GATTACCAGAGTCATTTCCT+TGG - chr8_2:31915733-31915752 Msa1244220:CDS 40.0%
!! AATTTGTTGGCTTTGTGGAG+TGG - chr8_2:31915973-31915992 Msa1244220:CDS 40.0%
TCTGAAGAGTTCGAGTAAGA+AGG - chr8_2:31916121-31916140 Msa1244220:intron 40.0%
CTCATGTGAAGCCATAGTTT+GGG + chr8_2:31916276-31916295 None:intergenic 40.0%
TCTCATGTGAAGCCATAGTT+TGG + chr8_2:31916277-31916296 None:intergenic 40.0%
AACTATGGCTTCACATGAGA+TGG - chr8_2:31916277-31916296 Msa1244220:intron 40.0%
!!! GGAGTGGTAAATTGTTTTGG+CGG - chr8_2:31916315-31916334 Msa1244220:intron 40.0%
!!! TGGTAAATTGTTTTGGCGGA+TGG - chr8_2:31916319-31916338 Msa1244220:intron 40.0%
!!! ATTGTTTTGGCGGATGGTTT+TGG - chr8_2:31916325-31916344 Msa1244220:intron 40.0%
CTGATTAGTGCACCTCTTAA+AGG - chr8_2:31916384-31916403 Msa1244220:intron 40.0%
CTCAACATCAAGCCTTTAAG+AGG + chr8_2:31916399-31916418 None:intergenic 40.0%
AAGACTGGAGTGGAGTTAAT+AGG - chr8_2:31916520-31916539 Msa1244220:intron 40.0%
TTTCAGTGATGGTAGTAGCA+AGG - chr8_2:31916665-31916684 Msa1244220:intron 40.0%
TCCTTAGCATCTCTTGTTCT+TGG - chr8_2:31916706-31916725 Msa1244220:intron 40.0%
ACCAAGAACAAGAGATGCTA+AGG + chr8_2:31916710-31916729 None:intergenic 40.0%
! GAAAGAAGTTGTTGGATTGG+AGG + chr8_2:31916881-31916900 None:intergenic 40.0%
AACTTCTTTCTGTGCTTTGC+AGG - chr8_2:31916891-31916910 Msa1244220:intron 40.0%
! TCACTGGGTGAGTTTAAGAT+TGG - chr8_2:31917018-31917037 Msa1244220:CDS 40.0%
! CACTGGGTGAGTTTAAGATT+GGG - chr8_2:31917019-31917038 Msa1244220:CDS 40.0%
! ATTGAAAGTATGTGTCCGTG+TGG + chr8_2:31917152-31917171 None:intergenic 40.0%
ACCAACACAGACACAGATAA+CGG + chr8_2:31917218-31917237 None:intergenic 40.0%
ATAAGCAAGTCAAAAGGCCA+TGG + chr8_2:31917256-31917275 None:intergenic 40.0%
GAAACCTGTGTGATGTTCAT+TGG + chr8_2:31917511-31917530 None:intergenic 40.0%
!! AAATTGACTTGAAAGGCGAC+AGG + chr8_2:31917768-31917787 None:intergenic 40.0%
! ATGGTAAGTCCCTTCAGTTT+TGG + chr8_2:31918038-31918057 None:intergenic 40.0%
GTGTGTCACAACATATGCAA+TGG + chr8_2:31918057-31918076 None:intergenic 40.0%
CCAATTGGCTGGTAATAAGA+TGG + chr8_2:31918251-31918270 None:intergenic 40.0%
CCATCTTATTACCAGCCAAT+TGG - chr8_2:31918248-31918267 Msa1244220:intron 40.0%
AAACAGCACAGAGAACTTCT+TGG + chr8_2:31918322-31918341 None:intergenic 40.0%
! CTCGGACACATTTTTGATGA+TGG - chr8_2:31918353-31918372 Msa1244220:intron 40.0%
! GATACAGTAACGTTTTCCTG+TGG + chr8_2:31918387-31918406 None:intergenic 40.0%
! CTTCCTTGGTTTGAGCTTAA+GGG + chr8_2:31918509-31918528 None:intergenic 40.0%
! ACTTCCTTGGTTTGAGCTTA+AGG + chr8_2:31918510-31918529 None:intergenic 40.0%
GAATTTGTGCAGCAGCTGAT+AGG + chr8_2:31915287-31915306 None:intergenic 45.0%
TTCTTCTTCAATCCGGGCAA+TGG - chr8_2:31915392-31915411 Msa1244220:three_prime_UTR 45.0%
TCTTCTTCAATCCGGGCAAT+GGG - chr8_2:31915393-31915412 Msa1244220:three_prime_UTR 45.0%
TTCTGTAGTGTTTGCGTCGT+TGG + chr8_2:31915439-31915458 None:intergenic 45.0%
CTTACTTAACGGTCGAACTC+AGG - chr8_2:31915711-31915730 Msa1244220:CDS 45.0%
AGTTCCCAAGGAAATGACTC+TGG + chr8_2:31915741-31915760 None:intergenic 45.0%
AGAGTCATTTCCTTGGGAAC+TGG - chr8_2:31915740-31915759 Msa1244220:CDS 45.0%
TGTTAATCCTCCAGTTCCCA+AGG + chr8_2:31915753-31915772 None:intergenic 45.0%
CTTGTAGGTGTGCTGTGTAT+GGG - chr8_2:31915821-31915840 Msa1244220:intron 45.0%
TTGTAGGTGTGCTGTGTATG+GGG - chr8_2:31915822-31915841 Msa1244220:intron 45.0%
!! GTTTTCAAGGTTGTGTGAGG+CGG - chr8_2:31915895-31915914 Msa1244220:intron 45.0%
TGAAGACACTTTGCAGCAGA+TGG - chr8_2:31916188-31916207 Msa1244220:intron 45.0%
CACACTTCTGCAGCAGATTT+GGG + chr8_2:31916244-31916263 None:intergenic 45.0%
! CAAATCTGCTGCAGAAGTGT+GGG - chr8_2:31916243-31916262 Msa1244220:intron 45.0%
TGGGAAGCTATCCCAAACTA+TGG - chr8_2:31916262-31916281 Msa1244220:intron 45.0%
GCTTCACATGAGATGGTGAA+GGG - chr8_2:31916284-31916303 Msa1244220:intron 45.0%
CTTCACATGAGATGGTGAAG+GGG - chr8_2:31916285-31916304 Msa1244220:intron 45.0%
AGATGGTGAAGGGGCTTAAT+TGG - chr8_2:31916294-31916313 Msa1244220:intron 45.0%
!!! TTTTGGCGGATGGTTTTGGA+GGG - chr8_2:31916329-31916348 Msa1244220:intron 45.0%
GCTAAGCTTAAGTCATCACC+TGG - chr8_2:31916354-31916373 Msa1244220:intron 45.0%
TGGAGTGGAGTTAATAGGTG+TGG - chr8_2:31916525-31916544 Msa1244220:intron 45.0%
GGAGTGGAGTTAATAGGTGT+GGG - chr8_2:31916526-31916545 Msa1244220:intron 45.0%
GAGTGGAGTTAATAGGTGTG+GGG - chr8_2:31916527-31916546 Msa1244220:intron 45.0%
ACATGTAACGTTTAGAGGGG+TGG - chr8_2:31916609-31916628 Msa1244220:intron 45.0%
TGTCTGACACTCATACCACA+CGG - chr8_2:31917134-31917153 Msa1244220:intron 45.0%
TCCGTTATCTGTGTCTGTGT+TGG - chr8_2:31917214-31917233 Msa1244220:intron 45.0%
GTGTGATGTTCATTGGCCAA+TGG + chr8_2:31917504-31917523 None:intergenic 45.0%
TTGGCCAATGAACATCACAC+AGG - chr8_2:31917504-31917523 Msa1244220:intron 45.0%
GCTGTTTGTGATGCTCATCT+CGG - chr8_2:31918335-31918354 Msa1244220:intron 45.0%
CTTCCCTTAAGCTCAAACCA+AGG - chr8_2:31918503-31918522 Msa1244220:intron 45.0%
! ATGTGTCACTCAGAAGCAGA+TGG - chr8_2:31918543-31918562 Msa1244220:intron 45.0%
CAACGTTGGGAAACAACCAA+TGG + chr8_2:31918770-31918789 None:intergenic 45.0%
GTCATTTCCTTGGGAACTGG+AGG - chr8_2:31915743-31915762 Msa1244220:CDS 50.0%
GCTTGTAGGTGTGCTGTGTA+TGG - chr8_2:31915820-31915839 Msa1244220:intron 50.0%
TGTAGGTGTGCTGTGTATGG+GGG - chr8_2:31915823-31915842 Msa1244220:intron 50.0%
!! TTGTTGGCTTTGTGGAGTGG+AGG - chr8_2:31915976-31915995 Msa1244220:CDS 50.0%
CCCTGCGAATACACACTACA+CGG + chr8_2:31916152-31916171 None:intergenic 50.0%
CCGTGTAGTGTGTATTCGCA+GGG - chr8_2:31916149-31916168 Msa1244220:intron 50.0%
TGTAGTGTGTATTCGCAGGG+TGG - chr8_2:31916152-31916171 Msa1244220:intron 50.0%
GTAGTGTGTATTCGCAGGGT+GGG - chr8_2:31916153-31916172 Msa1244220:intron 50.0%
CCACACTTCTGCAGCAGATT+TGG + chr8_2:31916245-31916264 None:intergenic 50.0%
CCAAATCTGCTGCAGAAGTG+TGG - chr8_2:31916242-31916261 Msa1244220:intron 50.0%
GGCTTCACATGAGATGGTGA+AGG - chr8_2:31916283-31916302 Msa1244220:intron 50.0%
GTGAAGGGGCTTAATTGGAG+TGG - chr8_2:31916299-31916318 Msa1244220:intron 50.0%
!!! GTTTTGGCGGATGGTTTTGG+AGG - chr8_2:31916328-31916347 Msa1244220:intron 50.0%
GCACTAATCAGCACAGATCC+AGG + chr8_2:31916375-31916394 None:intergenic 50.0%
ACTCCACTCCAGTCTTACGA+CGG + chr8_2:31916516-31916535 None:intergenic 50.0%
GAACCGAGAGAGCTTTCACT+GGG - chr8_2:31917003-31917022 Msa1244220:intron 50.0%
TCACCCAGTGAAAGCTCTCT+CGG + chr8_2:31917009-31917028 None:intergenic 50.0%
GTGCCAAAGTCGTGTTACCA+TGG - chr8_2:31917236-31917255 Msa1244220:intron 50.0%
AGGCCATGGTAACACGACTT+TGG + chr8_2:31917242-31917261 None:intergenic 50.0%
AGCACAGAGAACTTCTTGGC+GGG + chr8_2:31918318-31918337 None:intergenic 50.0%
CAGCACAGAGAACTTCTTGG+CGG + chr8_2:31918319-31918338 None:intergenic 50.0%
! AACGTTTTCCTGTGGGTGGA+GGG + chr8_2:31918379-31918398 None:intergenic 50.0%
! TAACGTTTTCCTGTGGGTGG+AGG + chr8_2:31918380-31918399 None:intergenic 50.0%
! CAGTAACGTTTTCCTGTGGG+TGG + chr8_2:31918383-31918402 None:intergenic 50.0%
AAGCTGAAGAGCCCATTGCC+CGG + chr8_2:31915407-31915426 None:intergenic 55.0%
GTAGGTGTGCTGTGTATGGG+GGG - chr8_2:31915824-31915843 Msa1244220:intron 55.0%
GGGGGTTGTGATGTTGACGA+AGG - chr8_2:31915842-31915861 Msa1244220:intron 55.0%
AAGGTTGTGTGAGGCGGTAC+TGG - chr8_2:31915901-31915920 Msa1244220:intron 55.0%
AGGTTGTGTGAGGCGGTACT+GGG - chr8_2:31915902-31915921 Msa1244220:intron 55.0%
GCCGTGTAGTGTGTATTCGC+AGG - chr8_2:31916148-31916167 Msa1244220:intron 55.0%
GTGTGTTCCCGTCGTAAGAC+TGG - chr8_2:31916505-31916524 Msa1244220:intron 55.0%
TTCCCGTCGTAAGACTGGAG+TGG - chr8_2:31916510-31916529 Msa1244220:intron 55.0%
CTCCACTCCAGTCTTACGAC+GGG + chr8_2:31916515-31916534 None:intergenic 55.0%
GGAACCGAGAGAGCTTTCAC+TGG - chr8_2:31917002-31917021 Msa1244220:intron 55.0%
GTGAGTATGCGCAAGCGAAC+AGG + chr8_2:31918121-31918140 None:intergenic 55.0%
GCACAGAGAACTTCTTGGCG+GGG + chr8_2:31918317-31918336 None:intergenic 55.0%
! TGAGGCGGTACTGGGTTGCT+TGG - chr8_2:31915910-31915929 Msa1244220:intron 60.0%
! GAGGCGGTACTGGGTTGCTT+GGG - chr8_2:31915911-31915930 Msa1244220:intron 60.0%
GTATTCGCAGGGTGGGCAGC+AGG - chr8_2:31916160-31916179 Msa1244220:intron 65.0%
! GATGATGGCCCTCCACCCAC+AGG - chr8_2:31918368-31918387 Msa1244220:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 31915200 31918830 31915200 ID=Msa1244220;Name=Msa1244220
chr8_2 mRNA 31915200 31918830 31915200 ID=Msa1244220-mRNA-1;Parent=Msa1244220;Name=Msa1244220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=64|1|1|1|0.6|0.66|6|278|203
chr8_2 exon 31915200 31915253 31915200 ID=Msa1244220-mRNA-1:exon:10512;Parent=Msa1244220-mRNA-1
chr8_2 exon 31915275 31915529 31915275 ID=Msa1244220-mRNA-1:exon:10511;Parent=Msa1244220-mRNA-1
chr8_2 exon 31915619 31915816 31915619 ID=Msa1244220-mRNA-1:exon:10510;Parent=Msa1244220-mRNA-1
chr8_2 exon 31915944 31916009 31915944 ID=Msa1244220-mRNA-1:exon:10509;Parent=Msa1244220-mRNA-1
chr8_2 exon 31917006 31917117 31917006 ID=Msa1244220-mRNA-1:exon:10508;Parent=Msa1244220-mRNA-1
chr8_2 exon 31918562 31918830 31918562 ID=Msa1244220-mRNA-1:exon:10507;Parent=Msa1244220-mRNA-1
chr8_2 five_prime_UTR 31918767 31918830 31918767 ID=Msa1244220-mRNA-1:five_prime_utr;Parent=Msa1244220-mRNA-1
chr8_2 CDS 31918562 31918766 31918562 ID=Msa1244220-mRNA-1:cds;Parent=Msa1244220-mRNA-1
chr8_2 CDS 31917006 31917117 31917006 ID=Msa1244220-mRNA-1:cds;Parent=Msa1244220-mRNA-1
chr8_2 CDS 31915944 31916009 31915944 ID=Msa1244220-mRNA-1:cds;Parent=Msa1244220-mRNA-1
chr8_2 CDS 31915619 31915816 31915619 ID=Msa1244220-mRNA-1:cds;Parent=Msa1244220-mRNA-1
chr8_2 CDS 31915499 31915529 31915499 ID=Msa1244220-mRNA-1:cds;Parent=Msa1244220-mRNA-1
chr8_2 three_prime_UTR 31915275 31915498 31915275 ID=Msa1244220-mRNA-1:three_prime_utr;Parent=Msa1244220-mRNA-1
chr8_2 three_prime_UTR 31915200 31915253 31915200 ID=Msa1244220-mRNA-1:three_prime_utr;Parent=Msa1244220-mRNA-1
Gene Sequence

>Msa1244220

ATGGCATCTCATAGTTTGAGCCTATCAGCTGCTGCACAAATTCTTCCCAATACCCTAATTCACAAATTTGATTCTAAACTTTTGTTGTGGCCATCGCGTTTTCTTACCAAACTTTCTTCTTCAAAACTTTCTTCTTCAATCCGGGCAATGGGCTCTTCAGCTTCTTCTCACTCCAACGACGCAAACACTACAGAAATTCAATCAGGATCTAGTCCTGTTGATTATAAATCTTTAAGTGATGCAGAATGGAAGAAGCAGCTAACCGATGAACAATTTTATGTTACTCGGAAAAAGGGAACCGAGAGAGCTTTCACTGGGGAGTACTGGAATACCAAAACTGAAGGGACTTACCATTGCATATGTTGTGACACACCCTTATTTGAATCATCTACCAAGTTTAATAGTGGAACTGGTTGGCCATCTTATTACCAGCCAATTGGTAAAAATGTGAAATCAAAGCTAGATTTGTCAATTATATTCATGCCCCGCCAAGAAGTTCTCTGTGCTGTTTGTGATGCTCATCTCGGACACATTTTTGATGATGGCCCTCCACCCACAGGAAAACGTTACTGTATCAACAGTGCTTCCCTTAAGCTCAAACCAAGGAAGTAA

Protein sequence

>Msa1244220

MASHSLSLSAAAQILPNTLIHKFDSKLLLWPSRFLTKLSSSKLSSSIRAMGSSASSHSNDANTTEIQSGSSPVDYKSLSDAEWKKQLTDEQFYVTRKKGTERAFTGEYWNTKTEGTYHCICCDTPLFESSTKFNSGTGWPSYYQPIGKNVKSKLDLSIIFMPRQEVLCAVCDAHLGHIFDDGPPPTGKRYCINSASLKLKPRK*