AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371350 MtrunA17_Chr3g0117991 93.333 225 14 1 1 225 1 224 2.81e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371350 AT5G50100.1 58.911 202 75 2 25 225 20 214 1.26e-83 248

Find 47 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATACCGTCTTCAAGTTAC+AGG 0.354145 3_1:+69517952 Msa0371350:CDS
TTACTCTCCCGACGAGAATC+AGG 0.359294 3_1:+69516928 Msa0371350:CDS
CGCCATTACAAAATATGAAC+CGG 0.360782 3_1:+69517778 Msa0371350:CDS
GAGTGGTGATGAAGGGTTAT+GGG 0.362096 3_1:-69516111 None:intergenic
GCCTATATCAACAAACTTGA+TGG 0.376854 3_1:-69516897 None:intergenic
ACCATCAAGTTTGTTGATAT+AGG 0.406883 3_1:+69516896 Msa0371350:CDS
TGTACCTCTCGCATGCATAA+TGG 0.408229 3_1:-69516691 None:intergenic
GGGATACCGGGTTTGAGAAT+AGG 0.422503 3_1:-69516209 None:intergenic
AGAGTGGTGATGAAGGGTTA+TGG 0.426564 3_1:-69516112 None:intergenic
TGAACAAGTTGGTCTTGGTT+GGG 0.442711 3_1:+69517751 Msa0371350:CDS
GAGAACAGTCTCCTAAAGAT+TGG 0.446474 3_1:+69516638 Msa0371350:CDS
TTTCTGGTTTGGTTGTGGAT+TGG 0.446784 3_1:-69516038 None:intergenic
TGGAATTTAAGATTGTGAAA+TGG 0.448918 3_1:-69516143 None:intergenic
ATGAACAAGTTGGTCTTGGT+TGG 0.452022 3_1:+69517750 Msa0371350:CDS
TTATATGAACAAGTTGGTCT+TGG 0.455211 3_1:+69517746 Msa0371350:CDS
CGAGAGAAGAATAAGAGTTA+TGG 0.482537 3_1:+69516872 Msa0371350:CDS
AAGATTAAAATGCTATATGA+TGG 0.504605 3_1:+69516661 Msa0371350:CDS
GGTTGTGGATTGGAGATGGA+AGG 0.508644 3_1:-69516028 None:intergenic
GTTTGGTTGTGGATTGGAGA+TGG 0.512182 3_1:-69516032 None:intergenic
ATTCATGCTATTCTATCAGA+TGG 0.517070 3_1:+69517253 Msa0371350:CDS
TCTAATATTTCTTCTAGAGG+TGG 0.520299 3_1:-69518394 None:intergenic
ATTAGAAGCTCGAAGAAAGA+AGG 0.528275 3_1:+69518411 Msa0371350:CDS
GTGAAAGATGAGGACGGAGA+TGG 0.540320 3_1:-69516163 None:intergenic
AGGAGATTATATGAACAAGT+TGG 0.546603 3_1:+69517740 Msa0371350:CDS
TCGAGGCCCTGATTCTCGTC+GGG 0.546724 3_1:-69516935 None:intergenic
GGTGAAAAGAGTGGTGATGA+AGG 0.552533 3_1:-69516119 None:intergenic
GGTTTGAGAATAGGAAGTGT+TGG 0.554588 3_1:-69516200 None:intergenic
AGTGGTGATGAAGGGTTATG+GGG 0.568411 3_1:-69516110 None:intergenic
TACAATTTCTAAGAAAGAAG+AGG 0.573127 3_1:+69516612 Msa0371350:CDS
GCTTCTAATATTTCTTCTAG+AGG 0.573724 3_1:-69518397 None:intergenic
GTCGAGGCCCTGATTCTCGT+CGG 0.574141 3_1:-69516936 None:intergenic
TACTCTCCCGACGAGAATCA+GGG 0.588982 3_1:+69516929 Msa0371350:CDS
GACTGGTGAAAACTTTCAGA+AGG 0.595265 3_1:+69519021 Msa0371350:three_prime_UTR
GAGAAGCCATACTTCGACAT+CGG 0.604066 3_1:-69517287 None:intergenic
AATTTCTAAGAAAGAAGAGG+AGG 0.606166 3_1:+69516615 Msa0371350:CDS
ATTTCTAAGAAAGAAGAGGA+GGG 0.607445 3_1:+69516616 Msa0371350:CDS
GTGAAAAGAGTGGTGATGAA+GGG 0.610189 3_1:-69516118 None:intergenic
ATTTACCTGTAACTTGAAGA+CGG 0.611328 3_1:-69517957 None:intergenic
AAATTTCCACAATATCCGAC+TGG 0.621942 3_1:+69519004 Msa0371350:exon
AGGAAGTGTTGGAAAAGCAT+CGG 0.623406 3_1:-69516189 None:intergenic
GATTAACAGTTTGATAGTCG+AGG 0.651778 3_1:-69516952 None:intergenic
AATTTAAGATTGTGAAATGG+AGG 0.655857 3_1:-69516140 None:intergenic
GCATCGGCGTGTGAAAGATG+AGG 0.663047 3_1:-69516173 None:intergenic
CGGCGTGTGAAAGATGAGGA+CGG 0.668499 3_1:-69516169 None:intergenic
TTGTCCATTATGCATGCGAG+AGG 0.675961 3_1:+69516687 Msa0371350:CDS
ACACTTCCTATTCTCAAACC+CGG 0.690891 3_1:+69516203 Msa0371350:CDS
TGAAATGGAGGTGAAAAGAG+TGG 0.691751 3_1:-69516128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGCTGATTTATTTATTTT+TGG + chr3_1:69516990-69517009 Msa0371350:intron 15.0%
!! ATTCTATAAAAATTTGAACA+TGG - chr3_1:69517395-69517414 None:intergenic 15.0%
!! GTAAAAATAGAATTTCATAA+TGG - chr3_1:69517709-69517728 None:intergenic 15.0%
!!! ATATTAGTACATGAAAATTT+TGG - chr3_1:69518007-69518026 None:intergenic 15.0%
!!! TGTTTTTGTTTATTATAGAT+GGG - chr3_1:69518707-69518726 None:intergenic 15.0%
!! AAAATATGGTATACAATAAT+AGG + chr3_1:69518792-69518811 Msa0371350:intron 15.0%
!!! TTATTTTTAATCCTTTTTAC+AGG + chr3_1:69518945-69518964 Msa0371350:intron 15.0%
!!! TATTTTTAATCCTTTTTACA+GGG + chr3_1:69518946-69518965 Msa0371350:intron 15.0%
!!! TTCTTTGTTTTTTGTTTTGT+AGG + chr3_1:69516544-69516563 Msa0371350:intron 20.0%
!!! TCTTTGTTTTTTGTTTTGTA+GGG + chr3_1:69516545-69516564 Msa0371350:intron 20.0%
!!! ATTTTAATCTTCCAATCTTT+AGG - chr3_1:69516652-69516671 None:intergenic 20.0%
!! AAGATTAAAATGCTATATGA+TGG + chr3_1:69516661-69516680 Msa0371350:CDS 20.0%
!!! TGATTTTTGTTTTTCCTTTT+AGG + chr3_1:69517219-69517238 Msa0371350:intron 20.0%
!! TATCCAGATAATGATATTAA+GGG - chr3_1:69517346-69517365 None:intergenic 20.0%
!! ATATCCAGATAATGATATTA+AGG - chr3_1:69517347-69517366 None:intergenic 20.0%
!! TATTTATATCTAACTCTTAC+TGG - chr3_1:69517504-69517523 None:intergenic 20.0%
!! TTAAACAATATTCACAGATT+GGG + chr3_1:69517896-69517915 Msa0371350:intron 20.0%
!!! TGATTCTGTATATAGTTTTT+GGG + chr3_1:69517927-69517946 Msa0371350:CDS 20.0%
!! ACTAAAAGTGATAATCTTAT+TGG - chr3_1:69518209-69518228 None:intergenic 20.0%
!! ATTTAACACAAAATTTCAGT+CGG + chr3_1:69518519-69518538 Msa0371350:intron 20.0%
!!! ATTCTCTTTAAAAATTCAGA+TGG - chr3_1:69518549-69518568 None:intergenic 20.0%
!! CAATTATTCTAATGTATATG+AGG - chr3_1:69518582-69518601 None:intergenic 20.0%
!!! TCTTTAATTTTTGCAACATA+AGG - chr3_1:69518666-69518685 None:intergenic 20.0%
!!! CTGTTTTTGTTTATTATAGA+TGG - chr3_1:69518708-69518727 None:intergenic 20.0%
!!! AAGACATTTTTTTTCTGGTT+TGG - chr3_1:69516052-69516071 None:intergenic 25.0%
!!! TCTGAAAGACATTTTTTTTC+TGG - chr3_1:69516057-69516076 None:intergenic 25.0%
!! AATTTAAGATTGTGAAATGG+AGG - chr3_1:69516143-69516162 None:intergenic 25.0%
!! TGGAATTTAAGATTGTGAAA+TGG - chr3_1:69516146-69516165 None:intergenic 25.0%
! AAACCATTGATATTCGATTA+GGG - chr3_1:69516233-69516252 None:intergenic 25.0%
! AAAACCATTGATATTCGATT+AGG - chr3_1:69516234-69516253 None:intergenic 25.0%
! CCAATGATAATAATAAGGTT+TGG - chr3_1:69516491-69516510 None:intergenic 25.0%
! CCAAACCTTATTATTATCAT+TGG + chr3_1:69516488-69516507 Msa0371350:intron 25.0%
! AACCTTATTATTATCATTGG+TGG + chr3_1:69516491-69516510 Msa0371350:intron 25.0%
! AACCACCAATGATAATAATA+AGG - chr3_1:69516496-69516515 None:intergenic 25.0%
!! TACAATTTCTAAGAAAGAAG+AGG + chr3_1:69516612-69516631 Msa0371350:CDS 25.0%
!!! TTGTTGTTATTTGTCGTTTT+AGG + chr3_1:69516838-69516857 Msa0371350:intron 25.0%
! TTTACAAGCAATGAATTGAT+TGG + chr3_1:69517138-69517157 Msa0371350:intron 25.0%
! TATTAAGGGTCTACAATTAT+AGG - chr3_1:69517332-69517351 None:intergenic 25.0%
!!! TGAAATTCTATTTTTACTGC+AGG + chr3_1:69517712-69517731 Msa0371350:intron 25.0%
!! TTGGTTCATTGTGTTATTAA+TGG + chr3_1:69517871-69517890 Msa0371350:intron 25.0%
! GTTAAACAATATTCACAGAT+TGG + chr3_1:69517895-69517914 Msa0371350:intron 25.0%
!! CTGATTCTGTATATAGTTTT+TGG + chr3_1:69517926-69517945 Msa0371350:CDS 25.0%
! GTAAATGCAAAGTTCATAAA+TGG + chr3_1:69517974-69517993 Msa0371350:intron 25.0%
! TATTGTAGTTGTTCTTTCTA+TGG + chr3_1:69518024-69518043 Msa0371350:intron 25.0%
!!! GTTTTTTTTTCCACTTTAGT+TGG + chr3_1:69518068-69518087 Msa0371350:intron 25.0%
! AAAAGTGATAATCTTATTGG+TGG - chr3_1:69518206-69518225 None:intergenic 25.0%
! AGCATAATTAGTTACTAATG+TGG + chr3_1:69518245-69518264 Msa0371350:intron 25.0%
! TAAAATCAGGAAAATGAAGA+TGG + chr3_1:69518488-69518507 Msa0371350:intron 25.0%
! CAACTATACCTAAGTTAATA+GGG - chr3_1:69518642-69518661 None:intergenic 25.0%
! TCAACTATACCTAAGTTAAT+AGG - chr3_1:69518643-69518662 None:intergenic 25.0%
! AACAGCAAAATGCTAAAATA+TGG + chr3_1:69518778-69518797 Msa0371350:intron 25.0%
!!! TTTTTTTTCTGGTTTGGTTG+TGG - chr3_1:69516046-69516065 None:intergenic 30.0%
AACCATTGATATTCGATTAG+GGG - chr3_1:69516232-69516251 None:intergenic 30.0%
TGAACTAAAACAAAACTTGC+AGG - chr3_1:69516327-69516346 None:intergenic 30.0%
! CCATCAGATTTTAAATTAGC+AGG - chr3_1:69516352-69516371 None:intergenic 30.0%
! CCTGCTAATTTAAAATCTGA+TGG + chr3_1:69516349-69516368 Msa0371350:intron 30.0%
! AATTTCTAAGAAAGAAGAGG+AGG + chr3_1:69516615-69516634 Msa0371350:CDS 30.0%
! ATTTCTAAGAAAGAAGAGGA+GGG + chr3_1:69516616-69516635 Msa0371350:CDS 30.0%
TCAATGAATGACATGAAACA+AGG - chr3_1:69516802-69516821 None:intergenic 30.0%
!! ACCATCAAGTTTGTTGATAT+AGG + chr3_1:69516896-69516915 Msa0371350:CDS 30.0%
GGTTTCATATCTCAATTACT+AGG + chr3_1:69517011-69517030 Msa0371350:intron 30.0%
TTCATGAACATCAACAAATG+TGG + chr3_1:69517077-69517096 Msa0371350:intron 30.0%
!! TTGTTTTTCCTTTTAGGCTA+TGG + chr3_1:69517225-69517244 Msa0371350:intron 30.0%
! TGTTTTTCCTTTTAGGCTAT+GGG + chr3_1:69517226-69517245 Msa0371350:intron 30.0%
ATTCATGCTATTCTATCAGA+TGG + chr3_1:69517253-69517272 Msa0371350:CDS 30.0%
AGACCCTTAATATCATTATC+TGG + chr3_1:69517340-69517359 Msa0371350:intron 30.0%
! TAGTATACATGCTCATCTTT+TGG - chr3_1:69517473-69517492 None:intergenic 30.0%
AAATGACATCATTAATGCAG+AGG + chr3_1:69517616-69517635 Msa0371350:intron 30.0%
AGGAGATTATATGAACAAGT+TGG + chr3_1:69517740-69517759 Msa0371350:CDS 30.0%
!! TTATATGAACAAGTTGGTCT+TGG + chr3_1:69517746-69517765 Msa0371350:CDS 30.0%
!! AACCGGTTCATATTTTGTAA+TGG - chr3_1:69517783-69517802 None:intergenic 30.0%
! TCTTCCTACCATACTTTTAA+AGG + chr3_1:69517805-69517824 Msa0371350:intron 30.0%
! TTTTCTGCAGTAAAGCTAAA+GGG - chr3_1:69517846-69517865 None:intergenic 30.0%
! TTTTTCTGCAGTAAAGCTAA+AGG - chr3_1:69517847-69517866 None:intergenic 30.0%
!! TTAGCTTTACTGCAGAAAAA+TGG + chr3_1:69517847-69517866 Msa0371350:intron 30.0%
ATTTACCTGTAACTTGAAGA+CGG - chr3_1:69517960-69517979 None:intergenic 30.0%
GTGGAAAAAAAAACCATCTA+AGG - chr3_1:69518062-69518081 None:intergenic 30.0%
CAAGCTTAGTAGAAATGATA+TGG + chr3_1:69518102-69518121 Msa0371350:intron 30.0%
CAAACAGTGCATAAATTGAA+AGG - chr3_1:69518351-69518370 None:intergenic 30.0%
! TCTAATATTTCTTCTAGAGG+TGG - chr3_1:69518397-69518416 None:intergenic 30.0%
GCTTCTAATATTTCTTCTAG+AGG - chr3_1:69518400-69518419 None:intergenic 30.0%
! TGTTTCTGCAGAATAAAATC+AGG + chr3_1:69518475-69518494 Msa0371350:intron 30.0%
TAATAGGGATAGACTAATCT+TGG - chr3_1:69518627-69518646 None:intergenic 30.0%
TAGTCTATCCCTATTAACTT+AGG + chr3_1:69518631-69518650 Msa0371350:intron 30.0%
TTGTTTATTATAGATGGGCA+TGG - chr3_1:69518702-69518721 None:intergenic 30.0%
! ACAAAGGCATGAACTAATAT+TGG - chr3_1:69518845-69518864 None:intergenic 30.0%
ATATTAGTTCATGCCTTTGT+TGG + chr3_1:69518845-69518864 Msa0371350:intron 30.0%
! GAAAAGTATGTTACCAACAA+AGG - chr3_1:69518861-69518880 None:intergenic 30.0%
! ATACAAGTTTGAGTGCTATT+TGG + chr3_1:69518899-69518918 Msa0371350:intron 30.0%
!!! GGTGCTGATTTTTGTTTTTA+TGG + chr3_1:69518920-69518939 Msa0371350:intron 30.0%
ATCCCCTAATCGAATATCAA+TGG + chr3_1:69516227-69516246 Msa0371350:intron 35.0%
AGTCCTTAATGTCAGCTTAT+TGG + chr3_1:69516376-69516395 Msa0371350:intron 35.0%
AGTCCAATAAGCTGACATTA+AGG - chr3_1:69516382-69516401 None:intergenic 35.0%
!!! CCACACTTGTTCATTGATTT+TGG - chr3_1:69516725-69516744 None:intergenic 35.0%
CCAAAATCAATGAACAAGTG+TGG + chr3_1:69516722-69516741 Msa0371350:intron 35.0%
CGAGAGAAGAATAAGAGTTA+TGG + chr3_1:69516872-69516891 Msa0371350:CDS 35.0%
GCCTATATCAACAAACTTGA+TGG - chr3_1:69516900-69516919 None:intergenic 35.0%
! GATTAACAGTTTGATAGTCG+AGG - chr3_1:69516955-69516974 None:intergenic 35.0%
AACTGTTAATCCCTTCTCTA+TGG + chr3_1:69516964-69516983 Msa0371350:intron 35.0%
AATTCTTCCCATAGCCTAAA+AGG - chr3_1:69517236-69517255 None:intergenic 35.0%
TTTCAACTTCTATGTAACCC+CGG + chr3_1:69517529-69517548 Msa0371350:intron 35.0%
! AGTGAGAGTACAAATACTGA+GGG - chr3_1:69517650-69517669 None:intergenic 35.0%
!! TATTTTTACTGCAGGCGTTT+AGG + chr3_1:69517720-69517739 Msa0371350:intron 35.0%
CGCCATTACAAAATATGAAC+CGG + chr3_1:69517778-69517797 Msa0371350:CDS 35.0%
! TTCTGCGTCCTTTAAAAGTA+TGG - chr3_1:69517816-69517835 None:intergenic 35.0%
TTTACTGCAGAAAAATGGCT+TGG + chr3_1:69517852-69517871 Msa0371350:intron 35.0%
! AAATACCGTCTTCAAGTTAC+AGG + chr3_1:69517952-69517971 Msa0371350:CDS 35.0%
GCTAAAAGTAACACCTTAGA+TGG + chr3_1:69518046-69518065 Msa0371350:intron 35.0%
GTGATAATCTTATTGGTGGA+TGG - chr3_1:69518202-69518221 None:intergenic 35.0%
! ATGCACTGTTTGTCCATTTT+TGG + chr3_1:69518359-69518378 Msa0371350:intron 35.0%
!!! TTTGTCCATTTTTGGTTTCC+AGG + chr3_1:69518367-69518386 Msa0371350:intron 35.0%
ATTAGAAGCTCGAAGAAAGA+AGG + chr3_1:69518411-69518430 Msa0371350:CDS 35.0%
AAATTTCCACAATATCCGAC+TGG + chr3_1:69519004-69519023 Msa0371350:exon 35.0%
!! TTCTGAAAGTTTTCACCAGT+CGG - chr3_1:69519022-69519041 None:intergenic 35.0%
!! TTTCTGGTTTGGTTGTGGAT+TGG - chr3_1:69516041-69516060 None:intergenic 40.0%
! GTGAAAAGAGTGGTGATGAA+GGG - chr3_1:69516121-69516140 None:intergenic 40.0%
TGAAATGGAGGTGAAAAGAG+TGG - chr3_1:69516131-69516150 None:intergenic 40.0%
!! AGGAAGTGTTGGAAAAGCAT+CGG - chr3_1:69516192-69516211 None:intergenic 40.0%
! GGTTTGAGAATAGGAAGTGT+TGG - chr3_1:69516203-69516222 None:intergenic 40.0%
ACACTTCCTATTCTCAAACC+CGG + chr3_1:69516203-69516222 Msa0371350:CDS 40.0%
ATATTCGATTAGGGGATACC+GGG - chr3_1:69516224-69516243 None:intergenic 40.0%
GATATTCGATTAGGGGATAC+CGG - chr3_1:69516225-69516244 None:intergenic 40.0%
GAGAACAGTCTCCTAAAGAT+TGG + chr3_1:69516638-69516657 Msa0371350:CDS 40.0%
!! CAGCTTTAGACCATAGAGAA+GGG - chr3_1:69516977-69516996 None:intergenic 40.0%
!! TCAGCTTTAGACCATAGAGA+AGG - chr3_1:69516978-69516997 None:intergenic 40.0%
! CAGTGAGAGTACAAATACTG+AGG - chr3_1:69517651-69517670 None:intergenic 40.0%
TGTCATACGAATCTGTTCAG+TGG + chr3_1:69517669-69517688 Msa0371350:intron 40.0%
!! ATGAACAAGTTGGTCTTGGT+TGG + chr3_1:69517750-69517769 Msa0371350:CDS 40.0%
!! TGAACAAGTTGGTCTTGGTT+GGG + chr3_1:69517751-69517770 Msa0371350:CDS 40.0%
AGTATGGTAGGAAGACTAAC+CGG - chr3_1:69517800-69517819 None:intergenic 40.0%
! GCGTCCTTTAAAAGTATGGT+AGG - chr3_1:69517812-69517831 None:intergenic 40.0%
ATATGGTCACATGAGAAACC+CGG + chr3_1:69518119-69518138 Msa0371350:intron 40.0%
! TCAATAGTTCTATGCTTCCC+GGG - chr3_1:69518140-69518159 None:intergenic 40.0%
! CTCAATAGTTCTATGCTTCC+CGG - chr3_1:69518141-69518160 None:intergenic 40.0%
AAAACTTGCCTCCATGGTTA+TGG + chr3_1:69518294-69518313 Msa0371350:intron 40.0%
GTTAGTGGTTACCATAACCA+TGG - chr3_1:69518308-69518327 None:intergenic 40.0%
CACATAATCACTCTGGTTAG+TGG - chr3_1:69518323-69518342 None:intergenic 40.0%
ATAGACTAATCTTGGCAGTG+GGG - chr3_1:69518619-69518638 None:intergenic 40.0%
GATAGACTAATCTTGGCAGT+GGG - chr3_1:69518620-69518639 None:intergenic 40.0%
GCATACTTCACCCTGTAAAA+AGG - chr3_1:69518959-69518978 None:intergenic 40.0%
! TTTTCACCAGTCGGATATTG+TGG - chr3_1:69519013-69519032 None:intergenic 40.0%
GACTGGTGAAAACTTTCAGA+AGG + chr3_1:69519021-69519040 Msa0371350:three_prime_UTR 40.0%
!! GTTTGGTTGTGGATTGGAGA+TGG - chr3_1:69516035-69516054 None:intergenic 45.0%
! AGTGGTGATGAAGGGTTATG+GGG - chr3_1:69516113-69516132 None:intergenic 45.0%
! GAGTGGTGATGAAGGGTTAT+GGG - chr3_1:69516114-69516133 None:intergenic 45.0%
! AGAGTGGTGATGAAGGGTTA+TGG - chr3_1:69516115-69516134 None:intergenic 45.0%
! GGTGAAAAGAGTGGTGATGA+AGG - chr3_1:69516122-69516141 None:intergenic 45.0%
TTGTCCATTATGCATGCGAG+AGG + chr3_1:69516687-69516706 Msa0371350:CDS 45.0%
TGTACCTCTCGCATGCATAA+TGG - chr3_1:69516694-69516713 None:intergenic 45.0%
TTGTCACCGATGTCGAAGTA+TGG + chr3_1:69517281-69517300 Msa0371350:intron 45.0%
GAGAAGCCATACTTCGACAT+CGG - chr3_1:69517290-69517309 None:intergenic 45.0%
ACTTCTATGTAACCCCGGAA+TGG + chr3_1:69517534-69517553 Msa0371350:intron 45.0%
TCACGTCAGTCCAACTAAAG+TGG - chr3_1:69518081-69518100 None:intergenic 45.0%
TATGGTCACATGAGAAACCC+GGG + chr3_1:69518120-69518139 Msa0371350:intron 45.0%
GAGAGAAAAACTTGCCTCCA+TGG + chr3_1:69518288-69518307 Msa0371350:intron 45.0%
AGTGGTTACCATAACCATGG+AGG - chr3_1:69518305-69518324 None:intergenic 45.0%
GGATGTGCACATAATCACTC+TGG - chr3_1:69518330-69518349 None:intergenic 45.0%
GTCGTCCTGGAAACCAAAAA+TGG - chr3_1:69518375-69518394 None:intergenic 45.0%
GGATAGACTAATCTTGGCAG+TGG - chr3_1:69518621-69518640 None:intergenic 45.0%
!! GGTTGTGGATTGGAGATGGA+AGG - chr3_1:69516031-69516050 None:intergenic 50.0%
GTGAAAGATGAGGACGGAGA+TGG - chr3_1:69516166-69516185 None:intergenic 50.0%
GGGATACCGGGTTTGAGAAT+AGG - chr3_1:69516212-69516231 None:intergenic 50.0%
TTACTCTCCCGACGAGAATC+AGG + chr3_1:69516928-69516947 Msa0371350:CDS 50.0%
TACTCTCCCGACGAGAATCA+GGG + chr3_1:69516929-69516948 Msa0371350:CDS 50.0%
GATTGGTGCATGCATGTGTG+AGG + chr3_1:69517155-69517174 Msa0371350:intron 50.0%
AAAGATGCAGCAGCCATTCC+GGG - chr3_1:69517550-69517569 None:intergenic 50.0%
CAAAGATGCAGCAGCCATTC+CGG - chr3_1:69517551-69517570 None:intergenic 50.0%
CGGCGTGTGAAAGATGAGGA+CGG - chr3_1:69516172-69516191 None:intergenic 55.0%
! GCATCGGCGTGTGAAAGATG+AGG - chr3_1:69516176-69516195 None:intergenic 55.0%
AAGATGCAGCAGCCATTCCG+GGG - chr3_1:69517549-69517568 None:intergenic 55.0%
! TCTTCTAGAGGTGGTCGTCC+TGG - chr3_1:69518388-69518407 None:intergenic 55.0%
TCGAGGCCCTGATTCTCGTC+GGG - chr3_1:69516938-69516957 None:intergenic 60.0%
GTCGAGGCCCTGATTCTCGT+CGG - chr3_1:69516939-69516958 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69516002 69519061 69516002 ID=Msa0371350;Name=Msa0371350
chr3_1 mRNA 69516002 69519061 69516002 ID=Msa0371350-mRNA-1;Parent=Msa0371350;Name=Msa0371350-mRNA-1;_AED=0.21;_eAED=0.21;_QI=63|1|1|1|0.85|0.87|8|56|225
chr3_1 exon 69516002 69516224 69516002 ID=Msa0371350-mRNA-1:exon:14840;Parent=Msa0371350-mRNA-1
chr3_1 exon 69516566 69516708 69516566 ID=Msa0371350-mRNA-1:exon:14841;Parent=Msa0371350-mRNA-1
chr3_1 exon 69516860 69516967 69516860 ID=Msa0371350-mRNA-1:exon:14842;Parent=Msa0371350-mRNA-1
chr3_1 exon 69517241 69517297 69517241 ID=Msa0371350-mRNA-1:exon:14843;Parent=Msa0371350-mRNA-1
chr3_1 exon 69517734 69517799 69517734 ID=Msa0371350-mRNA-1:exon:14844;Parent=Msa0371350-mRNA-1
chr3_1 exon 69517913 69517973 69517913 ID=Msa0371350-mRNA-1:exon:14845;Parent=Msa0371350-mRNA-1
chr3_1 exon 69518389 69518432 69518389 ID=Msa0371350-mRNA-1:exon:14846;Parent=Msa0371350-mRNA-1
chr3_1 exon 69518967 69519061 69518967 ID=Msa0371350-mRNA-1:exon:14847;Parent=Msa0371350-mRNA-1
chr3_1 five_prime_UTR 69516002 69516064 69516002 ID=Msa0371350-mRNA-1:five_prime_utr;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69516065 69516224 69516065 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69516566 69516708 69516566 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69516860 69516967 69516860 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69517241 69517297 69517241 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69517734 69517799 69517734 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69517913 69517973 69517913 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69518389 69518432 69518389 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 CDS 69518967 69519005 69518967 ID=Msa0371350-mRNA-1:cds;Parent=Msa0371350-mRNA-1
chr3_1 three_prime_UTR 69519006 69519061 69519006 ID=Msa0371350-mRNA-1:three_prime_utr;Parent=Msa0371350-mRNA-1
Gene Sequence

>Msa0371350

ATGTCTTTCAGAATCGCAGCAGTTTCTGCTTCTCGTATTGCAAAACCCCATAACCCTTCATCACCACTCTTTTCACCTCCATTTCACAATCTTAAATTCCATCTCCGTCCTCATCTTTCACACGCCGATGCTTTTCCAACACTTCCTATTCTCAAACCCGGGTCTCAATGTTATATTCGAGCTATTAGTGATAGAGCTGTAGAATCTACAATTTCTAAGAAAGAAGAGGAGGGAGAACAGTCTCCTAAAGATTGGAAGATTAAAATGCTATATGATGGAGATTGTCCATTATGCATGCGAGAGGTGAATATGCTACGAGAGAAGAATAAGAGTTATGGCACCATCAAGTTTGTTGATATAGGCTCAGATGATTACTCTCCCGACGAGAATCAGGGCCTCGACTATCAAACTGCTATGGGAAGAATTCATGCTATTCTATCAGATGGAACTGTTGTCACCGATGTCGAAGCGTTTAGGAGATTATATGAACAAGTTGGTCTTGGTTGGGTTTACGCCATTACAAAATATGAACCGATTGGGAAAATTGCTGATTCTGTATATAGTTTTTGGGCTAAATACCGTCTTCAAGTTACAGGACGACCACCTCTAGAAGAAATATTAGAAGCTCGAAGAAAGAAGGGTGAAGTATGCAAAGACAACGATGCTTGCAAGATGTAA

Protein sequence

>Msa0371350

MSFRIAAVSASRIAKPHNPSSPLFSPPFHNLKFHLRPHLSHADAFPTLPILKPGSQCYIRAISDRAVESTISKKEEEGEQSPKDWKIKMLYDGDCPLCMREVNMLREKNKSYGTIKFVDIGSDDYSPDENQGLDYQTAMGRIHAILSDGTVVTDVEAFRRLYEQVGLGWVYAITKYEPIGKIADSVYSFWAKYRLQVTGRPPLEEILEARRKKGEVCKDNDACKM*