AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243630 MtrunA17_Chr8g0359081 94.241 191 10 1 13 203 23 212 1.30e-126 355
Msa1243630 MtrunA17_Chr4g0049401 45.600 125 63 2 79 201 65 186 7.26e-34 119
Msa1243630 MtrunA17_Chr2g0286921 43.200 125 66 2 79 201 41 162 4.48e-31 111
Msa1243630 MtrunA17_Chr2g0286931 40.164 122 68 2 82 201 13 131 1.30e-26 99.4
Msa1243630 MtrunA17_Chr2g0286901 40.594 101 51 3 105 201 55 150 4.26e-19 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243630 AT1G53670.1 80.159 126 25 0 74 199 69 194 6.27e-80 237
Msa1243630 AT1G53670.2 75.397 126 24 1 74 199 69 187 3.45e-73 220
Msa1243630 AT4G04800.1 44.000 125 65 2 79 201 50 171 4.54e-33 117
Msa1243630 AT4G04830.1 40.945 127 70 2 79 203 11 134 5.01e-31 110
Msa1243630 AT4G21840.1 44.262 122 63 2 80 199 18 136 6.25e-31 110
Msa1243630 AT4G21830.2 44.262 122 63 2 80 199 16 134 7.48e-31 110
Msa1243630 AT4G21830.1 44.262 122 63 2 80 199 19 137 1.61e-30 109
Msa1243630 AT4G21860.4 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1243630 AT4G21860.1 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1243630 AT4G21860.3 40.580 138 77 2 66 201 63 197 3.79e-30 110
Msa1243630 AT4G21850.1 43.443 122 64 2 80 199 19 137 1.05e-29 107
Msa1243630 AT4G04810.1 40.157 127 71 2 79 203 11 134 2.08e-28 104
Msa1243630 AT4G04840.1 39.024 123 70 3 79 199 27 146 4.65e-28 103
Msa1243630 AT4G04830.2 36.220 127 66 3 79 203 11 124 6.89e-23 89.7
Msa1243630 AT4G21850.2 43.902 82 45 1 80 160 19 100 1.39e-17 75.5
Msa1243630 AT4G21860.2 43.590 78 44 0 66 143 63 140 3.88e-17 76.3
Msa1243630 AT4G04810.2 45.455 66 36 0 79 144 11 76 7.65e-16 70.9

Find 52 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATCAAATTTGTGAATT+AGG 0.095369 8_2:+30126302 None:intergenic
ATAAAGTACTTACTCAAATA+AGG 0.239315 8_2:+30123542 None:intergenic
ACTTCCTTGGTTTGAGCTTA+AGG 0.254966 8_2:+30123112 None:intergenic
AGAATCAAATTTGTGAATTA+GGG 0.264145 8_2:+30126303 None:intergenic
CAGATGGTTTAATATTAAAA+TGG 0.274102 8_2:-30123060 Msa1243630:three_prime_UTR
CTTCCTTGGTTTGAGCTTAA+GGG 0.347472 8_2:+30123113 None:intergenic
CTTACAAACTTATATTAAAC+AGG 0.351555 8_2:+30122811 None:intergenic
CAAAACTTTCTTCTTCAATC+CGG 0.352314 8_2:-30126234 Msa1243630:CDS
TTCTGTAGTGTTTGCGTCGT+TGG 0.357559 8_2:+30126183 None:intergenic
CGTCGTTTAAGAATCGGATT+TGG 0.366341 8_2:-30126381 Msa1243630:five_prime_UTR
AAATTTGTGAATTAGGGTAT+TGG 0.378091 8_2:+30126309 None:intergenic
AATTTGTGAATTAGGGTATT+GGG 0.379174 8_2:+30126310 None:intergenic
CTTAAAGATTTATAATCAAC+AGG 0.401442 8_2:+30124698 None:intergenic
ATGGTAAGTCCCTTCAGTTT+TGG 0.402394 8_2:+30123584 None:intergenic
TAAGAATCGGATTTGGAGAA+TGG 0.409891 8_2:-30126374 Msa1243630:exon
ACCAAGTTTAATAGTGGAAC+TGG 0.412251 8_2:-30123398 Msa1243630:CDS
TTCTTCTTCAATCCGGGCAA+TGG 0.415084 8_2:-30126227 Msa1243630:CDS
ATTTGACTATCTTACTTCCT+TGG 0.431236 8_2:+30123099 None:intergenic
CCATCTTATTACCAGCCAAT+TGG 0.432412 8_2:-30123371 Msa1243630:CDS
TCTTCTTCAATCCGGGCAAT+GGG 0.433463 8_2:-30126226 Msa1243630:CDS
TCAAAAGCTTAAACAACGTT+GGG 0.436753 8_2:+30122839 None:intergenic
AAACAGCACAGAGAACTTCT+TGG 0.444117 8_2:+30123300 None:intergenic
AAAACTTTCTTCTTCAATCC+GGG 0.445114 8_2:-30126233 Msa1243630:CDS
GAATTTGTGCAGCAGCTGAT+AGG 0.447579 8_2:+30126335 None:intergenic
TAAAGTACTTACTCAAATAA+GGG 0.456545 8_2:+30123543 None:intergenic
GAAAACGTTACTGTATCAAC+AGG 0.465505 8_2:-30123229 Msa1243630:intron
CCAATTGGCTGGTAATAAGA+TGG 0.475719 8_2:+30123371 None:intergenic
GAAACCCGTCGTTTAAGAAT+CGG 0.481333 8_2:-30126387 Msa1243630:five_prime_UTR
TTCAAAAGCTTAAACAACGT+TGG 0.485018 8_2:+30122838 None:intergenic
AACACTACAGAAATTCAATC+AGG 0.493813 8_2:-30126172 Msa1243630:intron
TCATCTACCAAGTTTAATAG+TGG 0.496314 8_2:-30123404 Msa1243630:CDS
ACCAGTTCCACTATTAAACT+TGG 0.499953 8_2:+30123397 None:intergenic
AGCACAGAGAACTTCTTGGC+GGG 0.512905 8_2:+30123304 None:intergenic
AATCTTTAAGTGATGCAGAA+TGG 0.513509 8_2:-30124685 Msa1243630:CDS
CAAATCCGATTCTTAAACGA+CGG 0.536295 8_2:+30126382 None:intergenic
TCACCCAGTGAAAGCTCTCT+CGG 0.541253 8_2:+30124613 None:intergenic
GGAACCGAGAGAGCTTTCAC+TGG 0.542234 8_2:-30124617 Msa1243630:CDS
GATGATGGCCCTCCACCCAC+AGG 0.547765 8_2:-30123251 Msa1243630:CDS
AAATCCGATTCTTAAACGAC+GGG 0.554268 8_2:+30126383 None:intergenic
AAGCTGAAGAGCCCATTGCC+CGG 0.557701 8_2:+30126215 None:intergenic
GCTGTTTGTGATGCTCATCT+CGG 0.566492 8_2:-30123284 Msa1243630:CDS
TACTGGAATACCAAAACTGA+AGG 0.570093 8_2:-30123594 Msa1243630:CDS
AGTAACATAAAATTGTTCAT+CGG 0.572643 8_2:+30124649 None:intergenic
AGTTTAATAGTGGAACTGGT+TGG 0.589954 8_2:-30123394 Msa1243630:CDS
CAGCACAGAGAACTTCTTGG+CGG 0.609123 8_2:+30123303 None:intergenic
GCACAGAGAACTTCTTGGCG+GGG 0.628010 8_2:+30123305 None:intergenic
GTGTGTCACAACATATGCAA+TGG 0.629248 8_2:+30123565 None:intergenic
ATGTGTCACTCAGAAGCAGA+TGG 0.630866 8_2:-30123076 Msa1243630:three_prime_UTR
CTTCCCTTAAGCTCAAACCA+AGG 0.648370 8_2:-30123116 Msa1243630:CDS
ACTGGAATACCAAAACTGAA+GGG 0.657265 8_2:-30123593 Msa1243630:CDS
GAACCGAGAGAGCTTTCACT+GGG 0.657323 8_2:-30124616 Msa1243630:intron
AGTTTGGTAAGAAAACGCGA+TGG 0.728635 8_2:+30126265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAATTTTAATTTTATG+AGG - chr8_2:30122821-30122840 Msa1243630:three_prime_UTR 10.0%
!!! TGTTTTTTTAATTCATTTTA+GGG - chr8_2:30125611-30125630 Msa1243630:intron 10.0%
!! TATTTATTTAACCAAATATA+TGG - chr8_2:30125759-30125778 Msa1243630:intron 10.0%
!!! TTTCACATTTTATAAAAATT+TGG + chr8_2:30126290-30126309 None:intergenic 10.0%
!! ATCAAAATATTAAGTTATGT+TGG + chr8_2:30123217-30123236 None:intergenic 15.0%
!! GAAAAAAAAAAATATCTAGT+GGG - chr8_2:30123274-30123293 Msa1243630:CDS 15.0%
!! AAATTGATTATTCAATTTGT+TGG - chr8_2:30123571-30123590 Msa1243630:CDS 15.0%
!! TAATAAAGAGATTGATATAT+AGG - chr8_2:30124410-30124429 Msa1243630:intron 15.0%
!! TTTATTTCCTCAAATTATTA+CGG - chr8_2:30124787-30124806 Msa1243630:intron 15.0%
!! TTAAATAGACATAAAAATCA+AGG + chr8_2:30124908-30124927 None:intergenic 15.0%
!! CCTTTAATGTAAAATAAATT+TGG + chr8_2:30124963-30124982 None:intergenic 15.0%
!!! CCAAATTTATTTTACATTAA+AGG - chr8_2:30124960-30124979 Msa1243630:intron 15.0%
!!! CTGTTTTTTTAATTCATTTT+AGG - chr8_2:30125610-30125629 Msa1243630:intron 15.0%
!! AGAATCAAATTTGTGAATTA+GGG + chr8_2:30122930-30122949 None:intergenic 20.0%
!! TAGAATCAAATTTGTGAATT+AGG + chr8_2:30122931-30122950 None:intergenic 20.0%
!! AGTAAAGAAAAAAAAAAGTG+AGG + chr8_2:30123107-30123126 None:intergenic 20.0%
!!! ATATTTTGATAGAAACAAAC+TGG - chr8_2:30123227-30123246 Msa1243630:intron 20.0%
!! GGAAAAAAAAAAATATCTAG+TGG - chr8_2:30123273-30123292 Msa1243630:CDS 20.0%
!! AACAAAATTGTACAAGAAAA+TGG - chr8_2:30123621-30123640 Msa1243630:intron 20.0%
!! AAAATGAAAATAGGAGAAAT+TGG - chr8_2:30123681-30123700 Msa1243630:intron 20.0%
!! CTTAAAGATTTATAATCAAC+AGG + chr8_2:30124535-30124554 None:intergenic 20.0%
!! AGTAACATAAAATTGTTCAT+CGG + chr8_2:30124584-30124603 None:intergenic 20.0%
!!! ATGAACAATTTTATGTTACT+CGG - chr8_2:30124584-30124603 Msa1243630:intron 20.0%
!! TCCAAGTTCTATATTTAAAA+CGG - chr8_2:30125319-30125338 Msa1243630:intron 20.0%
!!! TGTATCAAGTTTTTCATATT+GGG + chr8_2:30125419-30125438 None:intergenic 20.0%
!!! TAAAGTACTTACTCAAATAA+GGG + chr8_2:30125690-30125709 None:intergenic 20.0%
!!! ATAAAGTACTTACTCAAATA+AGG + chr8_2:30125691-30125710 None:intergenic 20.0%
!! CAGATGGTTTAATATTAAAA+TGG - chr8_2:30126170-30126189 Msa1243630:intron 20.0%
!! CTTACAAACTTATATTAAAC+AGG + chr8_2:30126422-30126441 None:intergenic 20.0%
!! AATTTGTGAATTAGGGTATT+GGG + chr8_2:30122923-30122942 None:intergenic 25.0%
! AAATTTGTGAATTAGGGTAT+TGG + chr8_2:30122924-30122943 None:intergenic 25.0%
!! TTGATTCTAAACTTTTGTTG+TGG - chr8_2:30122942-30122961 Msa1243630:three_prime_UTR 25.0%
!!! AAGTTTTGAAGAAGAAAGTT+TGG + chr8_2:30122984-30123003 None:intergenic 25.0%
! TCAAGATTGATAAGTTTAGA+AGG - chr8_2:30123252-30123271 Msa1243630:CDS 25.0%
! ACACCCGAAAAAATATTATT+AGG - chr8_2:30123388-30123407 Msa1243630:CDS 25.0%
!!! CCTCCTAATAATATTTTTTC+GGG + chr8_2:30123394-30123413 None:intergenic 25.0%
!!! CCCTCCTAATAATATTTTTT+CGG + chr8_2:30123395-30123414 None:intergenic 25.0%
! CCGAAAAAATATTATTAGGA+GGG - chr8_2:30123392-30123411 Msa1243630:CDS 25.0%
! CGAAAAAATATTATTAGGAG+GGG - chr8_2:30123393-30123412 Msa1243630:CDS 25.0%
! GAAAAAATATTATTAGGAGG+GGG - chr8_2:30123394-30123413 Msa1243630:CDS 25.0%
! AAATTAAATACTCTGCTTGT+AGG - chr8_2:30123417-30123436 Msa1243630:intron 25.0%
!! TTGAATGATCATTGTTTTCA+AGG - chr8_2:30123493-30123512 Msa1243630:intron 25.0%
! ACTGAAGTGAAAATGAAAAT+AGG - chr8_2:30123672-30123691 Msa1243630:intron 25.0%
!! AAAGTTGTATGTTGGTTATA+AGG - chr8_2:30124057-30124076 Msa1243630:intron 25.0%
! AAGAGATTGATATATAGGAA+CGG - chr8_2:30124415-30124434 Msa1243630:intron 25.0%
!! ATTTTATGTTACTCGGAAAA+AGG - chr8_2:30124591-30124610 Msa1243630:intron 25.0%
!! TTTTATGTTACTCGGAAAAA+GGG - chr8_2:30124592-30124611 Msa1243630:intron 25.0%
!! CCAAGTTCTATATTTAAAAC+GGG - chr8_2:30125320-30125339 Msa1243630:intron 25.0%
!! TTCTATATTTAAAACGGGAA+AGG - chr8_2:30125325-30125344 Msa1243630:intron 25.0%
!! GTGTATCAAGTTTTTCATAT+TGG + chr8_2:30125420-30125439 None:intergenic 25.0%
! AACTTTGTCACAAGAATATA+TGG + chr8_2:30125522-30125541 None:intergenic 25.0%
! TTATAAGTTCAAGATGATTC+AGG + chr8_2:30125785-30125804 None:intergenic 25.0%
!! GATTTCACATTTTTACCAAT+TGG + chr8_2:30125877-30125896 None:intergenic 25.0%
!! TAAAGAATCACTTGTTGAAT+TGG - chr8_2:30126024-30126043 Msa1243630:intron 25.0%
!! AAAGAATCACTTGTTGAATT+GGG - chr8_2:30126025-30126044 Msa1243630:intron 25.0%
!!! GTCTAAAAGTTTGTTTGTTT+TGG - chr8_2:30126078-30126097 Msa1243630:intron 25.0%
!! GATCAATTTACAGATTTTGT+CGG + chr8_2:30126199-30126218 None:intergenic 25.0%
CAAAACTTTCTTCTTCAATC+CGG - chr8_2:30122996-30123015 Msa1243630:three_prime_UTR 30.0%
AAAACTTTCTTCTTCAATCC+GGG - chr8_2:30122997-30123016 Msa1243630:three_prime_UTR 30.0%
AACACTACAGAAATTCAATC+AGG - chr8_2:30123058-30123077 Msa1243630:three_prime_UTR 30.0%
TCAGGTATTCATTATTCTCT+TGG - chr8_2:30123076-30123095 Msa1243630:three_prime_UTR 30.0%
CAGGTATTCATTATTCTCTT+GGG - chr8_2:30123077-30123096 Msa1243630:three_prime_UTR 30.0%
GTCAGATGATACTTACTTAA+CGG - chr8_2:30123311-30123330 Msa1243630:CDS 30.0%
CCCGAAAAAATATTATTAGG+AGG - chr8_2:30123391-30123410 Msa1243630:CDS 30.0%
!! TATTCAATTTGTTGGCTTTG+TGG - chr8_2:30123579-30123598 Msa1243630:CDS 30.0%
! ATTGGAGTGGTAAATTGTTT+TGG - chr8_2:30123923-30123942 Msa1243630:intron 30.0%
! TAACCAACATACAACTTTTC+AGG + chr8_2:30124055-30124074 None:intergenic 30.0%
!! CTTGCTGTTGAAAATTGAAT+GGG - chr8_2:30124173-30124192 Msa1243630:intron 30.0%
! TTGCTGTTGAAAATTGAATG+GGG - chr8_2:30124174-30124193 Msa1243630:intron 30.0%
TCTAAACGTTACATGTATGT+TGG + chr8_2:30124216-30124235 None:intergenic 30.0%
AACATACATGTAACGTTTAG+AGG - chr8_2:30124215-30124234 Msa1243630:intron 30.0%
ACATACATGTAACGTTTAGA+GGG - chr8_2:30124216-30124235 Msa1243630:intron 30.0%
AATCTTTAAGTGATGCAGAA+TGG - chr8_2:30124545-30124564 Msa1243630:intron 30.0%
AACACACAATCATTGAAAGA+AGG - chr8_2:30124992-30125011 Msa1243630:intron 30.0%
TGTTCATTGTATTTCACTTG+TGG - chr8_2:30125190-30125209 Msa1243630:intron 30.0%
TACCTGAAATGAAAGATACA+AGG - chr8_2:30125226-30125245 Msa1243630:intron 30.0%
ATCCTTGTATCTTTCATTTC+AGG + chr8_2:30125231-30125250 None:intergenic 30.0%
!! CCCGTTTTAAATATAGAACT+TGG + chr8_2:30125323-30125342 None:intergenic 30.0%
!! CCTTACAAAATTGACTTGAA+AGG + chr8_2:30125386-30125405 None:intergenic 30.0%
!! CCTTTCAAGTCAATTTTGTA+AGG - chr8_2:30125383-30125402 Msa1243630:intron 30.0%
! TTGGTGTCCATATATGATTA+AGG - chr8_2:30125478-30125497 Msa1243630:intron 30.0%
TGGTGTCCATATATGATTAA+GGG - chr8_2:30125479-30125498 Msa1243630:intron 30.0%
ACATTGCCCTTAATCATATA+TGG + chr8_2:30125488-30125507 None:intergenic 30.0%
ATATGATTAAGGGCAATGTA+AGG - chr8_2:30125489-30125508 Msa1243630:intron 30.0%
!! TAATTCATTTTAGGGAGTAC+TGG - chr8_2:30125619-30125638 Msa1243630:intron 30.0%
ATTAAACTTGGTAGATGATC+TGG + chr8_2:30125824-30125843 None:intergenic 30.0%
TCATCTACCAAGTTTAATAG+TGG - chr8_2:30125826-30125845 Msa1243630:intron 30.0%
ATTTGACTATCTTACTTCCT+TGG + chr8_2:30126134-30126153 None:intergenic 30.0%
TCAAAAGCTTAAACAACGTT+GGG + chr8_2:30126394-30126413 None:intergenic 30.0%
TTCAAAAGCTTAAACAACGT+TGG + chr8_2:30126395-30126414 None:intergenic 30.0%
AAATCCGATTCTTAAACGAC+GGG + chr8_2:30122850-30122869 None:intergenic 35.0%
CAAATCCGATTCTTAAACGA+CGG + chr8_2:30122851-30122870 None:intergenic 35.0%
TAAGAATCGGATTTGGAGAA+TGG - chr8_2:30122856-30122875 Msa1243630:intron 35.0%
ATTACCAGAGTCATTTCCTT+GGG - chr8_2:30123345-30123364 Msa1243630:CDS 35.0%
!! ATTGTTTTCAAGGTTGTGTG+AGG - chr8_2:30123503-30123522 Msa1243630:intron 35.0%
AATTGTACAAGAAAATGGCG+AGG - chr8_2:30123626-30123645 Msa1243630:intron 35.0%
ATTGTACAAGAAAATGGCGA+GGG - chr8_2:30123627-30123646 Msa1243630:intron 35.0%
CTCTTCAGACACAACATTAA+GGG + chr8_2:30123721-30123740 None:intergenic 35.0%
ACTCTTCAGACACAACATTA+AGG + chr8_2:30123722-30123741 None:intergenic 35.0%
!!! ACAACTTTTCAGGTTCATGA+TGG + chr8_2:30124045-30124064 None:intergenic 35.0%
GAACCTGAAAAGTTGTATGT+TGG - chr8_2:30124049-30124068 Msa1243630:intron 35.0%
! TATGTTGGTTATAAGGCTGA+TGG - chr8_2:30124064-30124083 Msa1243630:intron 35.0%
!! GCTTGCTGTTGAAAATTGAA+TGG - chr8_2:30124172-30124191 Msa1243630:intron 35.0%
CATACATGTAACGTTTAGAG+GGG - chr8_2:30124217-30124236 Msa1243630:intron 35.0%
!!! CTCTATGCTATTTTCAGTGA+TGG - chr8_2:30124265-30124284 Msa1243630:intron 35.0%
CGATCGATATATATGTGCTT+TGG - chr8_2:30124465-30124484 Msa1243630:intron 35.0%
ACAGAAAGAAGTTGTTGGAT+TGG + chr8_2:30124495-30124514 None:intergenic 35.0%
AAAGCACAGAAAGAAGTTGT+TGG + chr8_2:30124500-30124519 None:intergenic 35.0%
CAAAGGTCCGTAATAATTTG+AGG + chr8_2:30124797-30124816 None:intergenic 35.0%
CTCAAATTATTACGGACCTT+TGG - chr8_2:30124795-30124814 Msa1243630:intron 35.0%
!! GATAACGGACATAATACCAA+AGG + chr8_2:30124814-30124833 None:intergenic 35.0%
TGAGTGATAAGCAAGTCAAA+AGG + chr8_2:30124873-30124892 None:intergenic 35.0%
GAACAAAACTGCAATCAATG+AGG + chr8_2:30125031-30125050 None:intergenic 35.0%
!!! TGCAGTTTTGTTCACAAATG+TGG - chr8_2:30125038-30125057 Msa1243630:intron 35.0%
!!! AGTTTTCTAGTTCTCACCAT+TGG - chr8_2:30125096-30125115 Msa1243630:intron 35.0%
GTGACATCTTCAACTAATTG+TGG + chr8_2:30125160-30125179 None:intergenic 35.0%
!!! GAGTTAGTTTTGTGTGCATT+TGG - chr8_2:30125446-30125465 Msa1243630:intron 35.0%
!! GTGCATTTGGCTTTAATACT+TGG - chr8_2:30125459-30125478 Msa1243630:intron 35.0%
AGTTTACTTCTCTACCATGT+TGG - chr8_2:30125538-30125557 Msa1243630:intron 35.0%
! ATCTCTTTAGAGAACCAACA+TGG + chr8_2:30125555-30125574 None:intergenic 35.0%
! GGTTCTCTAAAGAGATATTG+TGG - chr8_2:30125559-30125578 Msa1243630:intron 35.0%
TACTGGAATACCAAAACTGA+AGG - chr8_2:30125636-30125655 Msa1243630:intron 35.0%
ACTGGAATACCAAAACTGAA+GGG - chr8_2:30125637-30125656 Msa1243630:intron 35.0%
GATGATTCAGGCCATATATT+TGG + chr8_2:30125773-30125792 None:intergenic 35.0%
! ACCAAGTTTAATAGTGGAAC+TGG - chr8_2:30125832-30125851 Msa1243630:intron 35.0%
ACCAGTTCCACTATTAAACT+TGG + chr8_2:30125836-30125855 None:intergenic 35.0%
! AGTTTAATAGTGGAACTGGT+TGG - chr8_2:30125836-30125855 Msa1243630:intron 35.0%
! TCACATTTTTACCAATTGGC+TGG + chr8_2:30125873-30125892 None:intergenic 35.0%
! ATACAGTAACGTTTTCCTGT+GGG + chr8_2:30125997-30126016 None:intergenic 35.0%
GAAAACGTTACTGTATCAAC+AGG - chr8_2:30126001-30126020 Msa1243630:intron 35.0%
AGACAAATGTGAGCTTATAC+AGG + chr8_2:30126062-30126081 None:intergenic 35.0%
TAGCATTACGAACTTACCAT+TGG - chr8_2:30126362-30126381 Msa1243630:exon 35.0%
GAAACCCGTCGTTTAAGAAT+CGG - chr8_2:30122843-30122862 Msa1243630:three_prime_UTR 40.0%
CGTCGTTTAAGAATCGGATT+TGG - chr8_2:30122849-30122868 Msa1243630:intron 40.0%
AGTTTGGTAAGAAAACGCGA+TGG + chr8_2:30122968-30122987 None:intergenic 40.0%
GATTACCAGAGTCATTTCCT+TGG - chr8_2:30123344-30123363 Msa1243630:CDS 40.0%
!! AATTTGTTGGCTTTGTGGAG+TGG - chr8_2:30123584-30123603 Msa1243630:CDS 40.0%
TCTGAAGAGTTCGAGTAAGA+AGG - chr8_2:30123732-30123751 Msa1243630:intron 40.0%
CTCATGTGAAGCCATAGTTT+GGG + chr8_2:30123887-30123906 None:intergenic 40.0%
TCTCATGTGAAGCCATAGTT+TGG + chr8_2:30123888-30123907 None:intergenic 40.0%
AACTATGGCTTCACATGAGA+TGG - chr8_2:30123888-30123907 Msa1243630:intron 40.0%
!!! GGAGTGGTAAATTGTTTTGG+CGG - chr8_2:30123926-30123945 Msa1243630:intron 40.0%
!!! TGGTAAATTGTTTTGGCGGA+TGG - chr8_2:30123930-30123949 Msa1243630:intron 40.0%
!!! ATTGTTTTGGCGGATGGTTT+TGG - chr8_2:30123936-30123955 Msa1243630:intron 40.0%
CTGATTAGTGCACCTCTTAA+AGG - chr8_2:30123995-30124014 Msa1243630:intron 40.0%
CTCAACATCAAGCCTTTAAG+AGG + chr8_2:30124010-30124029 None:intergenic 40.0%
AAGACTGGAGTGGAGTTAAT+AGG - chr8_2:30124131-30124150 Msa1243630:intron 40.0%
TTTCAGTGATGGTAGTAGCA+AGG - chr8_2:30124276-30124295 Msa1243630:intron 40.0%
TCCTTAGCATCTCTTGTTCT+TGG - chr8_2:30124317-30124336 Msa1243630:intron 40.0%
ACCAAGAACAAGAGATGCTA+AGG + chr8_2:30124321-30124340 None:intergenic 40.0%
! GAAAGAAGTTGTTGGATTGG+AGG + chr8_2:30124492-30124511 None:intergenic 40.0%
AACTTCTTTCTGTGCTTTGC+AGG - chr8_2:30124502-30124521 Msa1243630:intron 40.0%
! TCACTGGGTGAGTTTAAGAT+TGG - chr8_2:30124629-30124648 Msa1243630:CDS 40.0%
! CACTGGGTGAGTTTAAGATT+GGG - chr8_2:30124630-30124649 Msa1243630:CDS 40.0%
! ATTGAAAGTATGTGTCCGTG+TGG + chr8_2:30124763-30124782 None:intergenic 40.0%
ACCAACACAGACACAGATAA+CGG + chr8_2:30124829-30124848 None:intergenic 40.0%
ATAAGCAAGTCAAAAGGCCA+TGG + chr8_2:30124867-30124886 None:intergenic 40.0%
GAAACCTGTGTGATGTTCAT+TGG + chr8_2:30125122-30125141 None:intergenic 40.0%
!! AAATTGACTTGAAAGGCGAC+AGG + chr8_2:30125379-30125398 None:intergenic 40.0%
! ATGGTAAGTCCCTTCAGTTT+TGG + chr8_2:30125649-30125668 None:intergenic 40.0%
GTGTGTCACAACATATGCAA+TGG + chr8_2:30125668-30125687 None:intergenic 40.0%
CCAATTGGCTGGTAATAAGA+TGG + chr8_2:30125862-30125881 None:intergenic 40.0%
CCATCTTATTACCAGCCAAT+TGG - chr8_2:30125859-30125878 Msa1243630:intron 40.0%
AAACAGCACAGAGAACTTCT+TGG + chr8_2:30125933-30125952 None:intergenic 40.0%
! CTCGGACACATTTTTGATGA+TGG - chr8_2:30125964-30125983 Msa1243630:intron 40.0%
! GATACAGTAACGTTTTCCTG+TGG + chr8_2:30125998-30126017 None:intergenic 40.0%
! CTTCCTTGGTTTGAGCTTAA+GGG + chr8_2:30126120-30126139 None:intergenic 40.0%
! ACTTCCTTGGTTTGAGCTTA+AGG + chr8_2:30126121-30126140 None:intergenic 40.0%
GAATTTGTGCAGCAGCTGAT+AGG + chr8_2:30122898-30122917 None:intergenic 45.0%
TTCTTCTTCAATCCGGGCAA+TGG - chr8_2:30123003-30123022 Msa1243630:three_prime_UTR 45.0%
TCTTCTTCAATCCGGGCAAT+GGG - chr8_2:30123004-30123023 Msa1243630:three_prime_UTR 45.0%
TTCTGTAGTGTTTGCGTCGT+TGG + chr8_2:30123050-30123069 None:intergenic 45.0%
CTTACTTAACGGTCGAACTC+AGG - chr8_2:30123322-30123341 Msa1243630:CDS 45.0%
AGTTCCCAAGGAAATGACTC+TGG + chr8_2:30123352-30123371 None:intergenic 45.0%
AGAGTCATTTCCTTGGGAAC+TGG - chr8_2:30123351-30123370 Msa1243630:CDS 45.0%
TGTTAATCCTCCAGTTCCCA+AGG + chr8_2:30123364-30123383 None:intergenic 45.0%
CTTGTAGGTGTGCTGTGTAT+GGG - chr8_2:30123432-30123451 Msa1243630:intron 45.0%
TTGTAGGTGTGCTGTGTATG+GGG - chr8_2:30123433-30123452 Msa1243630:intron 45.0%
!! GTTTTCAAGGTTGTGTGAGG+CGG - chr8_2:30123506-30123525 Msa1243630:intron 45.0%
TGAAGACACTTTGCAGCAGA+TGG - chr8_2:30123799-30123818 Msa1243630:intron 45.0%
CACACTTCTGCAGCAGATTT+GGG + chr8_2:30123855-30123874 None:intergenic 45.0%
! CAAATCTGCTGCAGAAGTGT+GGG - chr8_2:30123854-30123873 Msa1243630:intron 45.0%
TGGGAAGCTATCCCAAACTA+TGG - chr8_2:30123873-30123892 Msa1243630:intron 45.0%
GCTTCACATGAGATGGTGAA+GGG - chr8_2:30123895-30123914 Msa1243630:intron 45.0%
CTTCACATGAGATGGTGAAG+GGG - chr8_2:30123896-30123915 Msa1243630:intron 45.0%
AGATGGTGAAGGGGCTTAAT+TGG - chr8_2:30123905-30123924 Msa1243630:intron 45.0%
!!! TTTTGGCGGATGGTTTTGGA+GGG - chr8_2:30123940-30123959 Msa1243630:intron 45.0%
GCTAAGCTTAAGTCATCACC+TGG - chr8_2:30123965-30123984 Msa1243630:intron 45.0%
TGGAGTGGAGTTAATAGGTG+TGG - chr8_2:30124136-30124155 Msa1243630:intron 45.0%
GGAGTGGAGTTAATAGGTGT+GGG - chr8_2:30124137-30124156 Msa1243630:intron 45.0%
GAGTGGAGTTAATAGGTGTG+GGG - chr8_2:30124138-30124157 Msa1243630:intron 45.0%
ACATGTAACGTTTAGAGGGG+TGG - chr8_2:30124220-30124239 Msa1243630:intron 45.0%
TGTCTGACACTCATACCACA+CGG - chr8_2:30124745-30124764 Msa1243630:intron 45.0%
TCCGTTATCTGTGTCTGTGT+TGG - chr8_2:30124825-30124844 Msa1243630:intron 45.0%
GTGTGATGTTCATTGGCCAA+TGG + chr8_2:30125115-30125134 None:intergenic 45.0%
TTGGCCAATGAACATCACAC+AGG - chr8_2:30125115-30125134 Msa1243630:intron 45.0%
GCTGTTTGTGATGCTCATCT+CGG - chr8_2:30125946-30125965 Msa1243630:intron 45.0%
CTTCCCTTAAGCTCAAACCA+AGG - chr8_2:30126114-30126133 Msa1243630:intron 45.0%
! ATGTGTCACTCAGAAGCAGA+TGG - chr8_2:30126154-30126173 Msa1243630:intron 45.0%
CAACGTTGGGAAACAACCAA+TGG + chr8_2:30126381-30126400 None:intergenic 45.0%
GTCATTTCCTTGGGAACTGG+AGG - chr8_2:30123354-30123373 Msa1243630:CDS 50.0%
GCTTGTAGGTGTGCTGTGTA+TGG - chr8_2:30123431-30123450 Msa1243630:intron 50.0%
TGTAGGTGTGCTGTGTATGG+GGG - chr8_2:30123434-30123453 Msa1243630:intron 50.0%
!! TTGTTGGCTTTGTGGAGTGG+AGG - chr8_2:30123587-30123606 Msa1243630:CDS 50.0%
CCCTGCGAATACACACTACA+CGG + chr8_2:30123763-30123782 None:intergenic 50.0%
CCGTGTAGTGTGTATTCGCA+GGG - chr8_2:30123760-30123779 Msa1243630:intron 50.0%
TGTAGTGTGTATTCGCAGGG+TGG - chr8_2:30123763-30123782 Msa1243630:intron 50.0%
GTAGTGTGTATTCGCAGGGT+GGG - chr8_2:30123764-30123783 Msa1243630:intron 50.0%
CCACACTTCTGCAGCAGATT+TGG + chr8_2:30123856-30123875 None:intergenic 50.0%
CCAAATCTGCTGCAGAAGTG+TGG - chr8_2:30123853-30123872 Msa1243630:intron 50.0%
GGCTTCACATGAGATGGTGA+AGG - chr8_2:30123894-30123913 Msa1243630:intron 50.0%
GTGAAGGGGCTTAATTGGAG+TGG - chr8_2:30123910-30123929 Msa1243630:intron 50.0%
!!! GTTTTGGCGGATGGTTTTGG+AGG - chr8_2:30123939-30123958 Msa1243630:intron 50.0%
GCACTAATCAGCACAGATCC+AGG + chr8_2:30123986-30124005 None:intergenic 50.0%
ACTCCACTCCAGTCTTACGA+CGG + chr8_2:30124127-30124146 None:intergenic 50.0%
GAACCGAGAGAGCTTTCACT+GGG - chr8_2:30124614-30124633 Msa1243630:intron 50.0%
TCACCCAGTGAAAGCTCTCT+CGG + chr8_2:30124620-30124639 None:intergenic 50.0%
GTGCCAAAGTCGTGTTACCA+TGG - chr8_2:30124847-30124866 Msa1243630:intron 50.0%
AGGCCATGGTAACACGACTT+TGG + chr8_2:30124853-30124872 None:intergenic 50.0%
AGCACAGAGAACTTCTTGGC+GGG + chr8_2:30125929-30125948 None:intergenic 50.0%
CAGCACAGAGAACTTCTTGG+CGG + chr8_2:30125930-30125949 None:intergenic 50.0%
! AACGTTTTCCTGTGGGTGGA+GGG + chr8_2:30125990-30126009 None:intergenic 50.0%
! TAACGTTTTCCTGTGGGTGG+AGG + chr8_2:30125991-30126010 None:intergenic 50.0%
! CAGTAACGTTTTCCTGTGGG+TGG + chr8_2:30125994-30126013 None:intergenic 50.0%
AAGCTGAAGAGCCCATTGCC+CGG + chr8_2:30123018-30123037 None:intergenic 55.0%
GTAGGTGTGCTGTGTATGGG+GGG - chr8_2:30123435-30123454 Msa1243630:intron 55.0%
GGGGGTTGTGATGTTGACGA+AGG - chr8_2:30123453-30123472 Msa1243630:intron 55.0%
AAGGTTGTGTGAGGCGGTAC+TGG - chr8_2:30123512-30123531 Msa1243630:intron 55.0%
AGGTTGTGTGAGGCGGTACT+GGG - chr8_2:30123513-30123532 Msa1243630:intron 55.0%
GCCGTGTAGTGTGTATTCGC+AGG - chr8_2:30123759-30123778 Msa1243630:intron 55.0%
GTGTGTTCCCGTCGTAAGAC+TGG - chr8_2:30124116-30124135 Msa1243630:intron 55.0%
TTCCCGTCGTAAGACTGGAG+TGG - chr8_2:30124121-30124140 Msa1243630:intron 55.0%
CTCCACTCCAGTCTTACGAC+GGG + chr8_2:30124126-30124145 None:intergenic 55.0%
GGAACCGAGAGAGCTTTCAC+TGG - chr8_2:30124613-30124632 Msa1243630:intron 55.0%
GTGAGTATGCGCAAGCGAAC+AGG + chr8_2:30125732-30125751 None:intergenic 55.0%
GCACAGAGAACTTCTTGGCG+GGG + chr8_2:30125928-30125947 None:intergenic 55.0%
! TGAGGCGGTACTGGGTTGCT+TGG - chr8_2:30123521-30123540 Msa1243630:intron 60.0%
! GAGGCGGTACTGGGTTGCTT+GGG - chr8_2:30123522-30123541 Msa1243630:intron 60.0%
GTATTCGCAGGGTGGGCAGC+AGG - chr8_2:30123771-30123790 Msa1243630:intron 65.0%
! GATGATGGCCCTCCACCCAC+AGG - chr8_2:30125979-30125998 Msa1243630:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 30122811 30126441 30122811 ID=Msa1243630;Name=Msa1243630
chr8_2 mRNA 30122811 30126441 30122811 ID=Msa1243630-mRNA-1;Parent=Msa1243630;Name=Msa1243630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=64|1|1|1|0.6|0.66|6|278|203
chr8_2 exon 30122811 30122864 30122811 ID=Msa1243630-mRNA-1:exon:10193;Parent=Msa1243630-mRNA-1
chr8_2 exon 30122886 30123140 30122886 ID=Msa1243630-mRNA-1:exon:10192;Parent=Msa1243630-mRNA-1
chr8_2 exon 30123230 30123427 30123230 ID=Msa1243630-mRNA-1:exon:10191;Parent=Msa1243630-mRNA-1
chr8_2 exon 30123555 30123620 30123555 ID=Msa1243630-mRNA-1:exon:10190;Parent=Msa1243630-mRNA-1
chr8_2 exon 30124617 30124728 30124617 ID=Msa1243630-mRNA-1:exon:10189;Parent=Msa1243630-mRNA-1
chr8_2 exon 30126173 30126441 30126173 ID=Msa1243630-mRNA-1:exon:10188;Parent=Msa1243630-mRNA-1
chr8_2 five_prime_UTR 30126378 30126441 30126378 ID=Msa1243630-mRNA-1:five_prime_utr;Parent=Msa1243630-mRNA-1
chr8_2 CDS 30126173 30126377 30126173 ID=Msa1243630-mRNA-1:cds;Parent=Msa1243630-mRNA-1
chr8_2 CDS 30124617 30124728 30124617 ID=Msa1243630-mRNA-1:cds;Parent=Msa1243630-mRNA-1
chr8_2 CDS 30123555 30123620 30123555 ID=Msa1243630-mRNA-1:cds;Parent=Msa1243630-mRNA-1
chr8_2 CDS 30123230 30123427 30123230 ID=Msa1243630-mRNA-1:cds;Parent=Msa1243630-mRNA-1
chr8_2 CDS 30123110 30123140 30123110 ID=Msa1243630-mRNA-1:cds;Parent=Msa1243630-mRNA-1
chr8_2 three_prime_UTR 30122886 30123109 30122886 ID=Msa1243630-mRNA-1:three_prime_utr;Parent=Msa1243630-mRNA-1
chr8_2 three_prime_UTR 30122811 30122864 30122811 ID=Msa1243630-mRNA-1:three_prime_utr;Parent=Msa1243630-mRNA-1
Gene Sequence

>Msa1243630

ATGGCATCTCATAGTTTGAGCCTATCAGCTGCTGCACAAATTCTTCCCAATACCCTAATTCACAAATTTGATTCTAAACTTTTGTTGTGGCCATCGCGTTTTCTTACCAAACTTTCTTCTTCAAAACTTTCTTCTTCAATCCGGGCAATGGGCTCTTCAGCTTCTTCTCACTCCAACGACGCAAACACTACAGAAATTCAATCAGGATCTAGTCCTGTTGATTATAAATCTTTAAGTGATGCAGAATGGAAGAAGCAGCTAACCGATGAACAATTTTATGTTACTCGGAAAAAGGGAACCGAGAGAGCTTTCACTGGGGAGTACTGGAATACCAAAACTGAAGGGACTTACCATTGCATATGTTGTGACACACCCTTATTTGAATCATCTACCAAGTTTAATAGTGGAACTGGTTGGCCATCTTATTACCAGCCAATTGGTAAAAATGTGAAATCAAAGCTAGATTTGTCAATTATATTCATGCCCCGCCAAGAAGTTCTCTGTGCTGTTTGTGATGCTCATCTCGGACACATTTTTGATGATGGCCCTCCACCCACAGGAAAACGTTACTGTATCAACAGTGCTTCCCTTAAGCTCAAACCAAGGAAGTAA

Protein sequence

>Msa1243630

MASHSLSLSAAAQILPNTLIHKFDSKLLLWPSRFLTKLSSSKLSSSIRAMGSSASSHSNDANTTEIQSGSSPVDYKSLSDAEWKKQLTDEQFYVTRKKGTERAFTGEYWNTKTEGTYHCICCDTPLFESSTKFNSGTGWPSYYQPIGKNVKSKLDLSIIFMPRQEVLCAVCDAHLGHIFDDGPPPTGKRYCINSASLKLKPRK*