Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978470 | XP_013443288.1 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.96e-75 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978470 | sp|O49884|RL30_LUPLU | 97.321 | 112 | 3 | 0 | 1 | 112 | 1 | 112 | 9.56e-77 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978470 | A0A072TK88 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 9.35e-76 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087910 | Msa0978470 | 0.822820 | 1.930951e-53 | -8.615850e-47 |
| Msa0114600 | Msa0978470 | 0.807262 | 5.509347e-50 | -8.615850e-47 |
| Msa0605890 | Msa0978470 | 0.823055 | 1.701706e-53 | -8.615850e-47 |
| Msa0649890 | Msa0978470 | 0.803280 | 3.758157e-49 | -8.615850e-47 |
| Msa0686550 | Msa0978470 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0694400 | Msa0978470 | 0.830612 | 2.662708e-55 | -8.615850e-47 |
| Msa0749000 | Msa0978470 | 0.860164 | 2.500132e-63 | -8.615850e-47 |
| Msa0788380 | Msa0978470 | 0.808921 | 2.441439e-50 | -8.615850e-47 |
| Msa0796490 | Msa0978470 | 0.849515 | 3.077552e-60 | -8.615850e-47 |
| Msa0835190 | Msa0978470 | 0.806434 | 8.241575e-50 | -8.615850e-47 |
| Msa0128330 | Msa0978470 | 0.822034 | 2.939922e-53 | -8.615850e-47 |
| Msa0146610 | Msa0978470 | 0.827302 | 1.686401e-54 | -8.615850e-47 |
| Msa0167860 | Msa0978470 | 0.834132 | 3.576541e-56 | -8.615850e-47 |
| Msa0174580 | Msa0978470 | 0.826254 | 3.000544e-54 | -8.615850e-47 |
| Msa0187810 | Msa0978470 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0194940 | Msa0978470 | 0.812649 | 3.811357e-51 | -8.615850e-47 |
| Msa0225350 | Msa0978470 | 0.802633 | 5.114026e-49 | -8.615850e-47 |
| Msa0235050 | Msa0978470 | 0.820420 | 6.923348e-53 | -8.615850e-47 |
| Msa0369410 | Msa0978470 | 0.822541 | 2.241469e-53 | -8.615850e-47 |
| Msa0419710 | Msa0978470 | 0.816444 | 5.512271e-52 | -8.615850e-47 |
| Msa0426250 | Msa0978470 | 0.818068 | 2.377446e-52 | -8.615850e-47 |
| Msa0450150 | Msa0978470 | 0.812244 | 4.674040e-51 | -8.615850e-47 |
| Msa0315430 | Msa0978470 | 0.859482 | 4.010992e-63 | -8.615850e-47 |
| Msa0573550 | Msa0978470 | 0.820136 | 8.045542e-53 | -8.615850e-47 |
| Msa0579830 | Msa0978470 | 0.814652 | 1.381456e-51 | -8.615850e-47 |
| Msa0597240 | Msa0978470 | 0.800329 | 1.516448e-48 | -8.615850e-47 |
| Msa0902730 | Msa0978470 | 0.804696 | 1.908387e-49 | -8.615850e-47 |
| Msa0929700 | Msa0978470 | 0.819972 | 8.770613e-53 | -8.615850e-47 |
| Msa0930890 | Msa0978470 | 0.832205 | 1.079529e-55 | -8.615850e-47 |
| Msa0978470 | Msa1093500 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0978470 | Msa1147670 | 0.808944 | 2.414320e-50 | -8.615850e-47 |
| Msa0978470 | Msa1164150 | 0.808443 | 3.089630e-50 | -8.615850e-47 |
| Msa0978470 | Msa1180000 | 0.839108 | 1.929638e-57 | -8.615850e-47 |
| Msa0978470 | Msa1208330 | 0.827487 | 1.522553e-54 | -8.615850e-47 |
| Msa0978470 | Msa1270640 | 0.848807 | 4.842744e-60 | -8.615850e-47 |
| Msa0978470 | Msa1270710 | 0.848992 | 4.302197e-60 | -8.615850e-47 |
| Msa0978470 | Msa1311400 | 0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0978470 | Msa1385480 | 0.835501 | 1.617505e-56 | -8.615850e-47 |
| Msa0978470 | Msa1397660 | 0.813139 | 2.976738e-51 | -8.615850e-47 |
| Msa0978470 | Msa1446410 | 0.830779 | 2.422661e-55 | -8.615850e-47 |
| Msa0978470 | Msa1463570 | 0.819244 | 1.285844e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978470 | MtrunA17_Chr6g0457261 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.80e-79 | 228 |
| Msa0978470 | MtrunA17_Chr7g0221511 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 3.19e-78 | 225 |
| Msa0978470 | MtrunA17_Chr5g0441211 | 91.071 | 112 | 10 | 0 | 1 | 112 | 1 | 112 | 2.21e-73 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978470 | AT1G36240.1 | 86.607 | 112 | 15 | 0 | 1 | 112 | 1 | 112 | 7.44e-71 | 207 |
| Msa0978470 | AT1G77940.1 | 86.607 | 112 | 15 | 0 | 1 | 112 | 1 | 112 | 2.04e-70 | 206 |
| Msa0978470 | AT3G18740.1 | 85.714 | 112 | 16 | 0 | 1 | 112 | 1 | 112 | 7.46e-70 | 204 |
Find 39 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCGTCTCCAACTAAATT+AGG | 0.156476 | 6_4:-14494918 | Msa0978470:five_prime_UTR |
| TGTGGACTTCCGGAAGTATT+TGG | 0.200752 | 6_4:-14491312 | Msa0978470:three_prime_UTR |
| CGGCAACCATGGTTGAAGTT+AGG | 0.262303 | 6_4:+14494862 | None:intergenic |
| TTGCATCAAGTCCTCGATTT+TGG | 0.269509 | 6_4:-14491394 | Msa0978470:three_prime_UTR |
| TCGAAATTTATGTGGACTTC+CGG | 0.356319 | 6_4:-14491322 | Msa0978470:three_prime_UTR |
| CTCGAATATCCAAATACTTC+CGG | 0.358485 | 6_4:+14491303 | None:intergenic |
| TGTCGTCTCCAACTAAATTA+GGG | 0.362374 | 6_4:-14494917 | Msa0978470:five_prime_UTR |
| ACAAGAAGCCCTAATTTAGT+TGG | 0.388427 | 6_4:+14494909 | None:intergenic |
| GAAGAGTGGGAAGTATACTT+TGG | 0.408269 | 6_4:-14494659 | Msa0978470:CDS |
| ACTTGATGCAACAACTCTAT+TGG | 0.430553 | 6_4:+14491406 | None:intergenic |
| GGCAACCATGGTTGAAGTTA+GGG | 0.438725 | 6_4:+14494863 | None:intergenic |
| AAGAGTGGGAAGTATACTTT+GGG | 0.457352 | 6_4:-14494658 | Msa0978470:CDS |
| TTGGAGTTCATCACTACAAC+GGG | 0.460582 | 6_4:-14492824 | Msa0978470:CDS |
| GTCTGTTGTTGATAGACTCA+TGG | 0.478131 | 6_4:+14494695 | None:intergenic |
| TTTGCTTATCGAAATTTATG+TGG | 0.481654 | 6_4:-14491330 | Msa0978470:three_prime_UTR |
| CAACAACTCTATTGGTCTCC+AGG | 0.486404 | 6_4:+14491414 | None:intergenic |
| GACATCATCAAGACCATACC+TGG | 0.503017 | 6_4:-14491432 | Msa0978470:CDS |
| ACTCTATTGGTCTCCAGGTA+TGG | 0.504048 | 6_4:+14491419 | None:intergenic |
| TGTCTCAGCATTGTTGATCC+TGG | 0.506683 | 6_4:-14491548 | Msa0978470:intron |
| TATGCTATGTTGGCGAAGGT+TGG | 0.517939 | 6_4:-14492843 | Msa0978470:CDS |
| ATCTCGGACTTCCTCAATGG+TGG | 0.525281 | 6_4:+14492873 | None:intergenic |
| CTCGCTCTTGTGATGAAGAG+TGG | 0.527491 | 6_4:-14494673 | Msa0978470:CDS |
| TCAATCTCGGACTTCCTCAA+TGG | 0.529674 | 6_4:+14492870 | None:intergenic |
| AAACTGTTCTCAAATCTCTC+AGG | 0.530584 | 6_4:-14494630 | Msa0978470:CDS |
| GTGGACCTCGGCACTGCTTG+CGG | 0.537789 | 6_4:-14491590 | Msa0978470:CDS |
| CTAACAATTGCCCACCATTG+AGG | 0.560937 | 6_4:-14492884 | Msa0978470:CDS |
| TCGCTCTTGTGATGAAGAGT+GGG | 0.561153 | 6_4:-14494672 | Msa0978470:CDS |
| CATAGCATAGTACTCAATCT+CGG | 0.571083 | 6_4:+14492857 | None:intergenic |
| TCTGTTGTTGATAGACTCAT+GGG | 0.574697 | 6_4:+14494696 | None:intergenic |
| GATTGAGTACTATGCTATGT+TGG | 0.583486 | 6_4:-14492853 | Msa0978470:CDS |
| TCTCGGACTTCCTCAATGGT+GGG | 0.591390 | 6_4:+14492874 | None:intergenic |
| GCATACCCTAACTTCAACCA+TGG | 0.600513 | 6_4:-14494868 | Msa0978470:exon |
| TTTCTTGCTTATAGACAATG+TGG | 0.602787 | 6_4:-14491609 | Msa0978470:intron |
| CTTATAGACAATGTGGACCT+CGG | 0.603044 | 6_4:-14491602 | Msa0978470:intron |
| CATGAAGAAGTTAGTTGTCG+AGG | 0.613481 | 6_4:+14491127 | None:intergenic |
| TAATTTAGTTGGAGACGACA+AGG | 0.629428 | 6_4:+14494920 | None:intergenic |
| GTACTATGCTATGTTGGCGA+AGG | 0.638030 | 6_4:-14492847 | Msa0978470:CDS |
| AAATCTCTCAGGAACAACAA+AGG | 0.657253 | 6_4:-14494619 | Msa0978470:intron |
| GTTGGAGTTCATCACTACAA+CGG | 0.670664 | 6_4:-14492825 | Msa0978470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTTGATTTTTAATT+TGG | - | chr6_4:14491300-14491319 | Msa0978470:three_prime_UTR | 10.0% |
| !!! | TCTAATTTTTAATATTTGTT+TGG | - | chr6_4:14491470-14491489 | Msa0978470:intron | 10.0% |
| !!! | TTTTTATTTTATGAATACAT+TGG | - | chr6_4:14491670-14491689 | Msa0978470:intron | 10.0% |
| !!! | TTTATAATTTTGTTTTGATT+CGG | - | chr6_4:14492765-14492784 | Msa0978470:intron | 10.0% |
| !!! | AAAAAAAGTGTTATAATATT+GGG | + | chr6_4:14493007-14493026 | None:intergenic | 10.0% |
| !!! | AAAAAAAAGTGTTATAATAT+TGG | + | chr6_4:14493008-14493027 | None:intergenic | 10.0% |
| !!! | AAATTTTAAGAGATAAAAAT+AGG | + | chr6_4:14493926-14493945 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTTATGTTTTC+AGG | - | chr6_4:14494572-14494591 | Msa0978470:intron | 10.0% |
| !!! | TACTAAAAATTCGATTTTTT+TGG | - | chr6_4:14491553-14491572 | Msa0978470:CDS | 15.0% |
| !!! | TTTTTACGAATGAATATTTT+TGG | - | chr6_4:14492043-14492062 | Msa0978470:intron | 15.0% |
| !!! | TTATAATTTTGTTTTGATTC+GGG | - | chr6_4:14492766-14492785 | Msa0978470:intron | 15.0% |
| !!! | TTTTTTAAGAATCATTAGTT+TGG | - | chr6_4:14492863-14492882 | Msa0978470:CDS | 15.0% |
| !! | TATAAACACTAAATGATTAA+TGG | - | chr6_4:14493276-14493295 | Msa0978470:intron | 15.0% |
| !! | ATAAACACTAAATGATTAAT+GGG | - | chr6_4:14493277-14493296 | Msa0978470:intron | 15.0% |
| !!! | TTATTTTATGAATACATTGG+AGG | - | chr6_4:14491673-14491692 | Msa0978470:intron | 20.0% |
| !!! | TGTTAATTTGAGTTTTGTTT+AGG | - | chr6_4:14491772-14491791 | Msa0978470:intron | 20.0% |
| !!! | GTTAATTTGAGTTTTGTTTA+GGG | - | chr6_4:14491773-14491792 | Msa0978470:intron | 20.0% |
| !! | AAACAGCTTATCAAATAAAT+AGG | - | chr6_4:14491830-14491849 | Msa0978470:intron | 20.0% |
| !!! | TTTATGTATGTTTTTGGAAT+GGG | - | chr6_4:14492237-14492256 | Msa0978470:intron | 20.0% |
| !! | CAATAATTTCAAATCTAATC+GGG | + | chr6_4:14492277-14492296 | None:intergenic | 20.0% |
| !! | CCAATAATTTCAAATCTAAT+CGG | + | chr6_4:14492278-14492297 | None:intergenic | 20.0% |
| !! | AATATTGTTTGTAACTATTG+TGG | - | chr6_4:14492384-14492403 | Msa0978470:intron | 20.0% |
| !!! | TGTTTTTTGTTAGATGTTAT+AGG | - | chr6_4:14492581-14492600 | Msa0978470:intron | 20.0% |
| !!! | ATTCTTAAGAATGAAAGTTT+TGG | - | chr6_4:14492636-14492655 | Msa0978470:intron | 20.0% |
| !!! | TTCTTAAGAATGAAAGTTTT+GGG | - | chr6_4:14492637-14492656 | Msa0978470:intron | 20.0% |
| !!! | TTAGTTTGGTTTCATAAATA+TGG | - | chr6_4:14492877-14492896 | Msa0978470:CDS | 20.0% |
| !!! | GAAATTGTTGATTTAATCAA+TGG | - | chr6_4:14492919-14492938 | Msa0978470:intron | 20.0% |
| !!! | ACACTTTTTTTTAACTATTG+TGG | - | chr6_4:14493016-14493035 | Msa0978470:intron | 20.0% |
| !! | TAGACTATTGTTAACTTAAA+CGG | - | chr6_4:14493725-14493744 | Msa0978470:intron | 20.0% |
| !!! | TTTGACATTTTCATTGTTTT+CGG | + | chr6_4:14494017-14494036 | None:intergenic | 20.0% |
| !! | TAATGCATTCTTAGAAATAA+AGG | + | chr6_4:14494049-14494068 | None:intergenic | 20.0% |
| !!! | TTCTAGCTCAATTGAATTAA+TGG | - | chr6_4:14491496-14491515 | Msa0978470:intron | 25.0% |
| !! | TCTAGCTCAATTGAATTAAT+GGG | - | chr6_4:14491497-14491516 | Msa0978470:intron | 25.0% |
| !!! | TTTTAGCTTGATTTAGTTGA+TGG | - | chr6_4:14491608-14491627 | Msa0978470:intron | 25.0% |
| !!! | TTTAGCTTGATTTAGTTGAT+GGG | - | chr6_4:14491609-14491628 | Msa0978470:intron | 25.0% |
| !!! | TTTATGGTTTTGTTTGGATT+TGG | - | chr6_4:14491706-14491725 | Msa0978470:intron | 25.0% |
| !!! | TTATGGTTTTGTTTGGATTT+GGG | - | chr6_4:14491707-14491726 | Msa0978470:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr6_4:14491973-14491992 | Msa0978470:intron | 25.0% |
| !! | CTATTTTCCTACAACATTAA+GGG | + | chr6_4:14492000-14492019 | None:intergenic | 25.0% |
| !! | TCTATTTTCCTACAACATTA+AGG | + | chr6_4:14492001-14492020 | None:intergenic | 25.0% |
| !! | GTAGGAAAATAGATTTTGTA+TGG | - | chr6_4:14492008-14492027 | Msa0978470:intron | 25.0% |
| !!! | ACGAATGAATATTTTTGGTA+TGG | - | chr6_4:14492048-14492067 | Msa0978470:intron | 25.0% |
| !!! | CGAATGAATATTTTTGGTAT+GGG | - | chr6_4:14492049-14492068 | Msa0978470:intron | 25.0% |
| !!! | TATTTTTGGTATGGGAAATA+TGG | - | chr6_4:14492057-14492076 | Msa0978470:intron | 25.0% |
| !! | GGTTTTTACAAAATTGAAGT+TGG | - | chr6_4:14492078-14492097 | Msa0978470:intron | 25.0% |
| !! | TCATTGATTGATAGAGAAAT+GGG | - | chr6_4:14492112-14492131 | Msa0978470:intron | 25.0% |
| ! | TACAAAATCCAATGAATCTT+GGG | + | chr6_4:14492200-14492219 | None:intergenic | 25.0% |
| ! | ATACAAAATCCAATGAATCT+TGG | + | chr6_4:14492201-14492220 | None:intergenic | 25.0% |
| !! | AAGATTCATTGGATTTTGTA+TGG | - | chr6_4:14492200-14492219 | Msa0978470:intron | 25.0% |
| !! | GACTTCTTTATGTATGTTTT+TGG | - | chr6_4:14492231-14492250 | Msa0978470:intron | 25.0% |
| !!! | CTTTATGTATGTTTTTGGAA+TGG | - | chr6_4:14492236-14492255 | Msa0978470:intron | 25.0% |
| !! | CCGATTAGATTTGAAATTAT+TGG | - | chr6_4:14492275-14492294 | Msa0978470:intron | 25.0% |
| !! | AAATTATTGGTCTCTTTGAT+TGG | - | chr6_4:14492288-14492307 | Msa0978470:intron | 25.0% |
| !! | AATTATTGGTCTCTTTGATT+GGG | - | chr6_4:14492289-14492308 | Msa0978470:intron | 25.0% |
| ! | GTTCAATGTATTCAAGAAAA+TGG | - | chr6_4:14492462-14492481 | Msa0978470:intron | 25.0% |
| !!! | TGTTGTATTGTTTGACTTTT+AGG | - | chr6_4:14492491-14492510 | Msa0978470:intron | 25.0% |
| !! | GGGAAGAATGAATTTAATTT+GGG | - | chr6_4:14492536-14492555 | Msa0978470:intron | 25.0% |
| !!! | TTGAGATTTATGGTTTTTTC+AGG | - | chr6_4:14492661-14492680 | Msa0978470:intron | 25.0% |
| !! | AGGAGTAAGTTTGTAATTTT+TGG | - | chr6_4:14492681-14492700 | Msa0978470:intron | 25.0% |
| ! | ATTTAATCAATGGAGAAATG+TGG | - | chr6_4:14492929-14492948 | Msa0978470:intron | 25.0% |
| ! | AATATACAACATACAACTCA+TGG | + | chr6_4:14492958-14492977 | None:intergenic | 25.0% |
| !!! | TTTTTTAACTATTGTGGATG+TGG | - | chr6_4:14493022-14493041 | Msa0978470:intron | 25.0% |
| !!! | AACATTTTTCGATTTTATGC+AGG | - | chr6_4:14493110-14493129 | Msa0978470:intron | 25.0% |
| !!! | ACATTTTTCGATTTTATGCA+GGG | - | chr6_4:14493111-14493130 | Msa0978470:intron | 25.0% |
| !! | ATTTGCTTTCTACATTTTGT+TGG | - | chr6_4:14493419-14493438 | Msa0978470:intron | 25.0% |
| ! | ATAGTTAAGCTACTTAATAC+TGG | + | chr6_4:14493445-14493464 | None:intergenic | 25.0% |
| ! | AATGCACTATTAAATTGCTT+TGG | - | chr6_4:14493467-14493486 | Msa0978470:intron | 25.0% |
| !!! | TTACTTCCTCAATTTGTTAA+TGG | - | chr6_4:14493647-14493666 | Msa0978470:intron | 25.0% |
| !! | AGATTTTTCGTTGCAATATT+AGG | - | chr6_4:14493875-14493894 | Msa0978470:intron | 25.0% |
| !!! | GTTAGTTTAACTTGTTAACA+AGG | - | chr6_4:14493948-14493967 | Msa0978470:intron | 25.0% |
| ! | TAAAATAACAACAGCAACAA+AGG | + | chr6_4:14494365-14494384 | None:intergenic | 25.0% |
| !!! | TTTTATGTTTTCAGGTGATT+CGG | - | chr6_4:14494580-14494599 | Msa0978470:intron | 25.0% |
| ! | TTTGCTTATCGAAATTTATG+TGG | - | chr6_4:14494704-14494723 | Msa0978470:CDS | 25.0% |
| !!! | GAGGTTTTTATGGTTTTGTT+TGG | - | chr6_4:14491700-14491719 | Msa0978470:intron | 30.0% |
| !!! | TATGGTTTTGTTTGGATTTG+GGG | - | chr6_4:14491708-14491727 | Msa0978470:intron | 30.0% |
| !! | AATGTATGGCTTTTGGAAAT+GGG | - | chr6_4:14491737-14491756 | Msa0978470:intron | 30.0% |
| AAAGTTAAGTCAATCCAAAC+AGG | + | chr6_4:14491799-14491818 | None:intergenic | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | + | chr6_4:14491925-14491944 | None:intergenic | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr6_4:14491974-14491993 | Msa0978470:intron | 30.0% | |
| ! | GTCATTGATTGATAGAGAAA+TGG | - | chr6_4:14492111-14492130 | Msa0978470:intron | 30.0% |
| !!! | TGTTTTTGGAATGGGAAATA+TGG | - | chr6_4:14492245-14492264 | Msa0978470:intron | 30.0% |
| CACACATAACAAAATACTCA+TGG | + | chr6_4:14492326-14492345 | None:intergenic | 30.0% | |
| !! | CATGAGTATTTTGTTATGTG+TGG | - | chr6_4:14492324-14492343 | Msa0978470:intron | 30.0% |
| !! | TTGTTTGACTTTTAGGAGAT+TGG | - | chr6_4:14492498-14492517 | Msa0978470:intron | 30.0% |
| !!! | TTTAGGAGATTGGTTTTGTA+TGG | - | chr6_4:14492508-14492527 | Msa0978470:intron | 30.0% |
| !!! | AGATTGGTTTTGTATGGATT+TGG | - | chr6_4:14492514-14492533 | Msa0978470:intron | 30.0% |
| !!! | GATTGGTTTTGTATGGATTT+GGG | - | chr6_4:14492515-14492534 | Msa0978470:intron | 30.0% |
| !!! | ATTGGTTTTGTATGGATTTG+GGG | - | chr6_4:14492516-14492535 | Msa0978470:intron | 30.0% |
| GGGGAAGAATGAATTTAATT+TGG | - | chr6_4:14492535-14492554 | Msa0978470:intron | 30.0% | |
| !! | TTAATTTGGGTTGTGAAATC+TGG | - | chr6_4:14492549-14492568 | Msa0978470:intron | 30.0% |
| !!! | AGTTTTGGGTTTGAGATTTA+TGG | - | chr6_4:14492651-14492670 | Msa0978470:intron | 30.0% |
| !!! | GTAATTTTTGGTTTTGTCGA+TGG | - | chr6_4:14492693-14492712 | Msa0978470:intron | 30.0% |
| !!! | GTTTTTTGGTTTGTGAAATG+TGG | - | chr6_4:14492799-14492818 | Msa0978470:intron | 30.0% |
| ! | TTTGATTCAAGTGTTGTGTT+CGG | - | chr6_4:14493366-14493385 | Msa0978470:intron | 30.0% |
| TTGATATGTGTTGAAACAAC+AGG | + | chr6_4:14493527-14493546 | None:intergenic | 30.0% | |
| AGATACGACTTCGATTTAAA+GGG | + | chr6_4:14493561-14493580 | None:intergenic | 30.0% | |
| TAGATACGACTTCGATTTAA+AGG | + | chr6_4:14493562-14493581 | None:intergenic | 30.0% | |
| TCAACACCATTAACAAATTG+AGG | + | chr6_4:14493656-14493675 | None:intergenic | 30.0% | |
| AAGTTAACAATAGTCTAGCT+AGG | + | chr6_4:14493722-14493741 | None:intergenic | 30.0% | |
| ! | TTTTACTCACTATTTCACTC+TGG | - | chr6_4:14493771-14493790 | Msa0978470:intron | 30.0% |
| TTTACTCACTATTTCACTCT+GGG | - | chr6_4:14493772-14493791 | Msa0978470:intron | 30.0% | |
| TTGTTATCGCAAAGTAAACA+GGG | + | chr6_4:14493901-14493920 | None:intergenic | 30.0% | |
| ATTGTTATCGCAAAGTAAAC+AGG | + | chr6_4:14493902-14493921 | None:intergenic | 30.0% | |
| ! | AACGTTTTCACAAAGTAAAC+AGG | - | chr6_4:14494176-14494195 | Msa0978470:intron | 30.0% |
| ! | CAAAACTGTTGTGAACATTT+TGG | + | chr6_4:14494255-14494274 | None:intergenic | 30.0% |
| TAAATGTCAAATTCCTGATG+TGG | + | chr6_4:14494303-14494322 | None:intergenic | 30.0% | |
| TTTCTTGCTTATAGACAATG+TGG | - | chr6_4:14494425-14494444 | Msa0978470:intron | 30.0% | |
| TAATTTAGTTGGAGACGACA+AGG | + | chr6_4:14491117-14491136 | None:intergenic | 35.0% | |
| TTGTCGTCTCCAACTAAATT+AGG | - | chr6_4:14491116-14491135 | Msa0978470:three_prime_UTR | 35.0% | |
| TGTCGTCTCCAACTAAATTA+GGG | - | chr6_4:14491117-14491136 | Msa0978470:three_prime_UTR | 35.0% | |
| ACAAGAAGCCCTAATTTAGT+TGG | + | chr6_4:14491128-14491147 | None:intergenic | 35.0% | |
| ! | AGATAGTACGGTTTTCTTTG+CGG | + | chr6_4:14491195-14491214 | None:intergenic | 35.0% |
| ! | TCTGTTGTTGATAGACTCAT+GGG | + | chr6_4:14491341-14491360 | None:intergenic | 35.0% |
| ! | AAGAGTGGGAAGTATACTTT+GGG | - | chr6_4:14491376-14491395 | Msa0978470:three_prime_UTR | 35.0% |
| AAACTGTTCTCAAATCTCTC+AGG | - | chr6_4:14491404-14491423 | Msa0978470:exon | 35.0% | |
| AAATCTCTCAGGAACAACAA+AGG | - | chr6_4:14491415-14491434 | Msa0978470:exon | 35.0% | |
| TGAATACATTGGAGGAAATG+AGG | - | chr6_4:14491681-14491700 | Msa0978470:intron | 35.0% | |
| ! | TGGAGGAAATGAGGTTTTTA+TGG | - | chr6_4:14491690-14491709 | Msa0978470:intron | 35.0% |
| ATTTGGGGAGAATGAATGTA+TGG | - | chr6_4:14491723-14491742 | Msa0978470:intron | 35.0% | |
| ! | GAGAATGAATGTATGGCTTT+TGG | - | chr6_4:14491730-14491749 | Msa0978470:intron | 35.0% |
| !! | GAATGTATGGCTTTTGGAAA+TGG | - | chr6_4:14491736-14491755 | Msa0978470:intron | 35.0% |
| !! | ATGTATGGCTTTTGGAAATG+GGG | - | chr6_4:14491738-14491757 | Msa0978470:intron | 35.0% |
| CATACAGAACAGAATACTCA+TGG | + | chr6_4:14492142-14492161 | None:intergenic | 35.0% | |
| GAGTATTCTGTTCTGTATGT+TGG | - | chr6_4:14492143-14492162 | Msa0978470:intron | 35.0% | |
| ATAGGTTTCCCAAGATTCAT+TGG | - | chr6_4:14492189-14492208 | Msa0978470:intron | 35.0% | |
| ATGTGTGGAAGAGATTGAAA+TGG | - | chr6_4:14492339-14492358 | Msa0978470:intron | 35.0% | |
| ! | TAGCTTTTGTATGCTTCTGT+TGG | - | chr6_4:14492608-14492627 | Msa0978470:intron | 35.0% |
| ! | AGCTTTTGTATGCTTCTGTT+GGG | - | chr6_4:14492609-14492628 | Msa0978470:intron | 35.0% |
| !!! | TTGGTTTTGTCGATGGATAT+TGG | - | chr6_4:14492700-14492719 | Msa0978470:intron | 35.0% |
| ! | GAGTATTTTGTTCTGTGTGT+TGG | - | chr6_4:14492729-14492748 | Msa0978470:intron | 35.0% |
| TGTTATGTTGCAACTGTTGT+AGG | - | chr6_4:14492831-14492850 | Msa0978470:CDS | 35.0% | |
| ! | GAACTCATTGATTATGCTTG+CGG | - | chr6_4:14493085-14493104 | Msa0978470:intron | 35.0% |
| CATAGCATAGTACTCAATCT+CGG | + | chr6_4:14493180-14493199 | None:intergenic | 35.0% | |
| GATTGAGTACTATGCTATGT+TGG | - | chr6_4:14493181-14493200 | Msa0978470:intron | 35.0% | |
| GAATCAAAAGCTAGAGAATG+TGG | + | chr6_4:14493354-14493373 | None:intergenic | 35.0% | |
| AGTCTAGCTAGGTTATACAA+AGG | + | chr6_4:14493711-14493730 | None:intergenic | 35.0% | |
| TTAACTTAAACGGCTGTTGT+TGG | - | chr6_4:14493735-14493754 | Msa0978470:intron | 35.0% | |
| GGACATAATGCACTTCTTAA+GGG | + | chr6_4:14494202-14494221 | None:intergenic | 35.0% | |
| AGGACATAATGCACTTCTTA+AGG | + | chr6_4:14494203-14494222 | None:intergenic | 35.0% | |
| ATTATGTCCTATCAGATCTG+AGG | - | chr6_4:14494213-14494232 | Msa0978470:intron | 35.0% | |
| CTAATAACCTCAGATCTGAT+AGG | + | chr6_4:14494223-14494242 | None:intergenic | 35.0% | |
| ! | CTATCAGATCTGAGGTTATT+AGG | - | chr6_4:14494221-14494240 | Msa0978470:intron | 35.0% |
| GTGTCGAATAATATGTTACC+AGG | + | chr6_4:14494507-14494526 | None:intergenic | 35.0% | |
| ACTTGATGCAACAACTCTAT+TGG | + | chr6_4:14494631-14494650 | None:intergenic | 35.0% | |
| TTCAAAAAGGACCAAAATCG+AGG | + | chr6_4:14494654-14494673 | None:intergenic | 35.0% | |
| !!! | GGTCCTTTTTGAAACAAAAC+TGG | - | chr6_4:14494661-14494680 | Msa0978470:CDS | 35.0% |
| !!! | CAGCCAGTTTTGTTTCAAAA+AGG | + | chr6_4:14494667-14494686 | None:intergenic | 35.0% |
| TCGAAATTTATGTGGACTTC+CGG | - | chr6_4:14494712-14494731 | Msa0978470:intron | 35.0% | |
| CTCGAATATCCAAATACTTC+CGG | + | chr6_4:14494734-14494753 | None:intergenic | 35.0% | |
| AGAGAGAGAGAGAGATAGTA+CGG | + | chr6_4:14491207-14491226 | None:intergenic | 40.0% | |
| ! | GTCTGTTGTTGATAGACTCA+TGG | + | chr6_4:14491342-14491361 | None:intergenic | 40.0% |
| ! | GAAGAGTGGGAAGTATACTT+TGG | - | chr6_4:14491375-14491394 | Msa0978470:three_prime_UTR | 40.0% |
| !!! | AGTTTTGTTTAGGGCCTGTT+TGG | - | chr6_4:14491782-14491801 | Msa0978470:intron | 40.0% |
| AATCTTGGGAAACCTATTCG+CGG | + | chr6_4:14492186-14492205 | None:intergenic | 40.0% | |
| GTCTCTTTGATTGGGAAATG+TGG | - | chr6_4:14492297-14492316 | Msa0978470:intron | 40.0% | |
| !!! | CGGGAAGAGTGAATGTTTTT+TGG | - | chr6_4:14492785-14492804 | Msa0978470:intron | 40.0% |
| GTTGGAGTTCATCACTACAA+CGG | - | chr6_4:14493209-14493228 | Msa0978470:intron | 40.0% | |
| TTGGAGTTCATCACTACAAC+GGG | - | chr6_4:14493210-14493229 | Msa0978470:intron | 40.0% | |
| ATTGTAGGACTGACAGTCTT+TGG | - | chr6_4:14493393-14493412 | Msa0978470:intron | 40.0% | |
| ATCGAAGTCGTATCTAGTGT+CGG | - | chr6_4:14493566-14493585 | Msa0978470:intron | 40.0% | |
| ! | TATCGTTGTTGTGTCGGTAT+TGG | + | chr6_4:14493606-14493625 | None:intergenic | 40.0% |
| CCAATGTATCGTTGTTGTGT+CGG | + | chr6_4:14493612-14493631 | None:intergenic | 40.0% | |
| !! | TGCTGCTGCTAAATTTTGAC+TGG | - | chr6_4:14493826-14493845 | Msa0978470:intron | 40.0% |
| GAGAGACTTCTTAAGTGTGT+CGG | + | chr6_4:14494106-14494125 | None:intergenic | 40.0% | |
| CTTATAGACAATGTGGACCT+CGG | - | chr6_4:14494432-14494451 | Msa0978470:intron | 40.0% | |
| ! | TTGCATCAAGTCCTCGATTT+TGG | - | chr6_4:14494640-14494659 | Msa0978470:CDS | 40.0% |
| CATGAAGAAGTTAGTTGTCG+AGG | + | chr6_4:14494910-14494929 | None:intergenic | 40.0% | |
| GCATACCCTAACTTCAACCA+TGG | - | chr6_4:14491166-14491185 | Msa0978470:three_prime_UTR | 45.0% | |
| GGCAACCATGGTTGAAGTTA+GGG | + | chr6_4:14491174-14491193 | None:intergenic | 45.0% | |
| TCGCTCTTGTGATGAAGAGT+GGG | - | chr6_4:14491362-14491381 | Msa0978470:three_prime_UTR | 45.0% | |
| TACAACATTAAGGGCCCGTT+TGG | + | chr6_4:14491991-14492010 | None:intergenic | 45.0% | |
| AAACGGGCCCTTAATGTTGT+AGG | - | chr6_4:14491990-14492009 | Msa0978470:intron | 45.0% | |
| GAAACCTATTCGCGGCAATT+AGG | + | chr6_4:14492178-14492197 | None:intergenic | 45.0% | |
| CTAACAATTGCCCACCATTG+AGG | - | chr6_4:14493150-14493169 | Msa0978470:intron | 45.0% | |
| TCAATCTCGGACTTCCTCAA+TGG | + | chr6_4:14493167-14493186 | None:intergenic | 45.0% | |
| GTACTATGCTATGTTGGCGA+AGG | - | chr6_4:14493187-14493206 | Msa0978470:intron | 45.0% | |
| TATGCTATGTTGGCGAAGGT+TGG | - | chr6_4:14493191-14493210 | Msa0978470:intron | 45.0% | |
| ! | GAATGTGGCTTGCAAGTTCA+AGG | + | chr6_4:14493339-14493358 | None:intergenic | 45.0% |
| GTTGTGTTCGGTCACATTGT+AGG | - | chr6_4:14493378-14493397 | Msa0978470:intron | 45.0% | |
| CCGACACAACAACGATACAT+TGG | - | chr6_4:14493609-14493628 | Msa0978470:intron | 45.0% | |
| GTTGATGTGTTTGTCGTGTC+CGG | - | chr6_4:14493671-14493690 | Msa0978470:intron | 45.0% | |
| GAAGAGAGAATGCTAGCTAG+AGG | + | chr6_4:14494072-14494091 | None:intergenic | 45.0% | |
| TTGATCAGTTGAGCCACATC+AGG | - | chr6_4:14494287-14494306 | Msa0978470:intron | 45.0% | |
| TGTCTCAGCATTGTTGATCC+TGG | - | chr6_4:14494486-14494505 | Msa0978470:intron | 45.0% | |
| GACATCATCAAGACCATACC+TGG | - | chr6_4:14494602-14494621 | Msa0978470:intron | 45.0% | |
| ! | ACTCTATTGGTCTCCAGGTA+TGG | + | chr6_4:14494618-14494637 | None:intergenic | 45.0% |
| ! | CAACAACTCTATTGGTCTCC+AGG | + | chr6_4:14494623-14494642 | None:intergenic | 45.0% |
| !! | TGTGGACTTCCGGAAGTATT+TGG | - | chr6_4:14494722-14494741 | Msa0978470:intron | 45.0% |
| CGGCAACCATGGTTGAAGTT+AGG | + | chr6_4:14491175-14491194 | None:intergenic | 50.0% | |
| ! | GGTTTTCTTTGCGGCAACCA+TGG | + | chr6_4:14491186-14491205 | None:intergenic | 50.0% |
| CTCGCTCTTGTGATGAAGAG+TGG | - | chr6_4:14491361-14491380 | Msa0978470:three_prime_UTR | 50.0% | |
| CATTAAGGGCCCGTTTGGAT+TGG | + | chr6_4:14491986-14492005 | None:intergenic | 50.0% | |
| GAAGCCTAATTGCCGCGAAT+AGG | - | chr6_4:14492171-14492190 | Msa0978470:intron | 50.0% | |
| TCTCGGACTTCCTCAATGGT+GGG | + | chr6_4:14493163-14493182 | None:intergenic | 50.0% | |
| ATCTCGGACTTCCTCAATGG+TGG | + | chr6_4:14493164-14493183 | None:intergenic | 50.0% | |
| !! | AAAGGCACTAGCACAGACAC+CGG | + | chr6_4:14493693-14493712 | None:intergenic | 50.0% |
| ! | ATTTTCCGCAAGCAGTGCCG+AGG | + | chr6_4:14494452-14494471 | None:intergenic | 55.0% |
| GTGGACCTCGGCACTGCTTG+CGG | - | chr6_4:14494444-14494463 | Msa0978470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 14491104 | 14494952 | 14491104 | ID=Msa0978470;Name=Msa0978470 |
| chr6_4 | mRNA | 14491104 | 14494952 | 14491104 | ID=Msa0978470-mRNA-1;Parent=Msa0978470;Name=Msa0978470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=81|1|1|1|1|1|5|318|112 |
| chr6_4 | exon | 14491104 | 14491462 | 14491104 | ID=Msa0978470-mRNA-1:exon:4768;Parent=Msa0978470-mRNA-1 |
| chr6_4 | exon | 14491549 | 14491617 | 14491549 | ID=Msa0978470-mRNA-1:exon:4767;Parent=Msa0978470-mRNA-1 |
| chr6_4 | exon | 14492823 | 14492924 | 14492823 | ID=Msa0978470-mRNA-1:exon:4766;Parent=Msa0978470-mRNA-1 |
| chr6_4 | exon | 14494620 | 14494725 | 14494620 | ID=Msa0978470-mRNA-1:exon:4765;Parent=Msa0978470-mRNA-1 |
| chr6_4 | exon | 14494851 | 14494952 | 14494851 | ID=Msa0978470-mRNA-1:exon:4764;Parent=Msa0978470-mRNA-1 |
| chr6_4 | five_prime_UTR | 14494872 | 14494952 | 14494872 | ID=Msa0978470-mRNA-1:five_prime_utr;Parent=Msa0978470-mRNA-1 |
| chr6_4 | CDS | 14494851 | 14494871 | 14494851 | ID=Msa0978470-mRNA-1:cds;Parent=Msa0978470-mRNA-1 |
| chr6_4 | CDS | 14494620 | 14494725 | 14494620 | ID=Msa0978470-mRNA-1:cds;Parent=Msa0978470-mRNA-1 |
| chr6_4 | CDS | 14492823 | 14492924 | 14492823 | ID=Msa0978470-mRNA-1:cds;Parent=Msa0978470-mRNA-1 |
| chr6_4 | CDS | 14491549 | 14491617 | 14491549 | ID=Msa0978470-mRNA-1:cds;Parent=Msa0978470-mRNA-1 |
| chr6_4 | CDS | 14491422 | 14491462 | 14491422 | ID=Msa0978470-mRNA-1:cds;Parent=Msa0978470-mRNA-1 |
| chr6_4 | three_prime_UTR | 14491104 | 14491421 | 14491104 | ID=Msa0978470-mRNA-1:three_prime_utr;Parent=Msa0978470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
