AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080830 MtrunA17_Chr1g0193141 97.329 337 9 0 1 337 1 337 0.0 652
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080830 AT5G26770.1 70.270 333 94 2 7 337 6 335 2.05e-164 462
Msa0080830 AT5G26770.2 70.270 333 94 2 7 337 6 335 2.05e-164 462
Msa0080830 AT5G26770.6 65.730 356 94 3 7 337 6 358 9.01e-159 448
Msa0080830 AT5G26770.5 65.730 356 94 3 7 337 6 358 9.01e-159 448
Msa0080830 AT5G26770.3 64.264 333 94 3 7 337 6 315 1.28e-144 411
Msa0080830 AT1G09470.1 61.468 327 125 1 11 337 11 336 3.09e-136 390
Msa0080830 AT5G26770.4 69.643 280 85 0 7 286 6 285 1.37e-134 385
Msa0080830 AT3G05830.3 63.314 338 121 3 1 337 1 336 5.80e-133 382
Msa0080830 AT3G05830.1 63.314 338 121 3 1 337 1 336 5.80e-133 382
Msa0080830 AT1G09470.2 60.245 327 128 2 11 337 11 335 1.01e-129 374
Msa0080830 AT1G09470.3 60.245 327 128 2 11 337 11 335 1.01e-129 374
Msa0080830 AT3G05830.2 60.969 351 121 4 1 337 1 349 1.33e-129 374
Msa0080830 AT1G09483.1 67.925 106 32 2 233 337 1 105 2.19e-42 143

Find 88 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATTGCTTTCATTTAT+AGG 0.131120 1_2:-59210900 Msa0080830:five_prime_UTR
TTCAGTTGATCCTTTGTTAA+AGG 0.155858 1_2:-59210748 Msa0080830:CDS
TGATCGCCATCAGTGCTTTC+TGG 0.163697 1_2:-59207252 Msa0080830:three_prime_UTR
AAAAGCAAAATCAGAATTTC+TGG 0.195429 1_2:-59207792 Msa0080830:CDS
TGGTAAATTGCAAAAGAAAT+TGG 0.246412 1_2:-59210334 Msa0080830:CDS
TAGAATTGAGCGTGATATTA+TGG 0.255210 1_2:-59208607 Msa0080830:CDS
TTCATCTTCTCTATATTCTT+AGG 0.270281 1_2:+59208519 None:intergenic
AAGTGCCAGTGGTAACTTTA+TGG 0.272422 1_2:+59207414 None:intergenic
TTGTGAACTGCGAAAATTAT+TGG 0.291074 1_2:-59208553 Msa0080830:CDS
GTCTTTAGCTTCTGAGTTGA+AGG 0.308444 1_2:-59210685 Msa0080830:CDS
AAGATTATGGAAATGGAAAT+TGG 0.308528 1_2:-59210354 Msa0080830:CDS
AACAAACTTGAGAAGGTATT+AGG 0.310751 1_2:+59207659 None:intergenic
AGAGACAAATGCAAAGATTA+TGG 0.320596 1_2:-59210367 Msa0080830:CDS
TACCTTCTCAAGTTTGTTGT+AGG 0.355203 1_2:-59207654 Msa0080830:three_prime_UTR
CTTCTGAGTTGAAGGAGCTT+AGG 0.360827 1_2:-59210677 Msa0080830:CDS
GAAACAACGGCGTGCTGATC+AGG 0.366383 1_2:-59208272 Msa0080830:CDS
ACCGGTTTCTGCGTTTGAAC+TGG 0.373892 1_2:+59211467 None:intergenic
AAATGCAAAGATTATGGAAA+TGG 0.386311 1_2:-59210361 Msa0080830:CDS
CAGAATTTCTGGGACACCTC+TGG 0.394928 1_2:-59207781 Msa0080830:CDS
AATATTGATTCAGCACATAA+AGG 0.405506 1_2:-59208868 Msa0080830:intron
TAATTTACAGAAGGATCTTA+AGG 0.405711 1_2:-59208670 Msa0080830:CDS
ATGGAGGCTCTTGCAAAATC+CGG 0.409298 1_2:-59208588 Msa0080830:CDS
GAGTGTGATGTGATGAGTTT+AGG 0.424564 1_2:+59211610 None:intergenic
GAATAAGCTACTGGTTGTTA+AGG 0.427044 1_2:-59208499 Msa0080830:CDS
GAAGAAGAGAGTGTTGAAGT+TGG 0.430394 1_2:-59208245 Msa0080830:CDS
AACATCAAAATCAGATCCTA+TGG 0.435412 1_2:+59210862 None:intergenic
TTAAGATCATGTCTGCTCAT+TGG 0.439395 1_2:-59208446 Msa0080830:CDS
GAAGGAGCTTAGGAGTCGTT+TGG 0.443244 1_2:-59210667 Msa0080830:CDS
TAGGAGTCGTTTGGCTTCGC+AGG 0.451060 1_2:-59210658 Msa0080830:CDS
AGTTATAGTTTCTTTAACAT+AGG 0.452026 1_2:+59210629 None:intergenic
GCACATGTGAAATGCTTTCA+AGG 0.454934 1_2:+59207305 Msa0080820:three_prime_UTR
ATCAACTGAAGCTTGTTTGT+CGG 0.455999 1_2:+59210761 None:intergenic
ACCAGTTCAAACGCAGAAAC+CGG 0.461567 1_2:-59211468 Msa0080830:intron
ATGCAGTATGTAGCAGCATC+AGG 0.463598 1_2:-59207560 Msa0080830:three_prime_UTR
TTGATGTTTACATACAAAAG+AGG 0.471456 1_2:-59210847 Msa0080830:five_prime_UTR
CTCAGACGCGCAAACTTCAA+AGG 0.472445 1_2:-59208198 Msa0080830:CDS
GTCTATGTCCATGCTAGTCT+TGG 0.474536 1_2:-59207743 Msa0080830:CDS
GGCACTTACCATACATATGC+TGG 0.475939 1_2:-59207398 Msa0080830:three_prime_UTR
TGATGAAATAGTTAGACTTA+AGG 0.477477 1_2:-59208475 Msa0080830:CDS
GACTAAGGAATTAGAATCAC+AGG 0.477639 1_2:-59208415 Msa0080830:intron
ACAAGGATTCTTGTATATAG+AGG 0.478425 1_2:-59207684 Msa0080830:three_prime_UTR
TGTTTATCGCATCATTAAGC+TGG 0.479296 1_2:-59207462 Msa0080830:three_prime_UTR
TTCAAACTCTTCTGCTGAGA+AGG 0.479809 1_2:-59210286 Msa0080830:intron
TGGAGGCTCTTGCAAAATCC+GGG 0.480155 1_2:-59208587 Msa0080830:CDS
GACTAAAACCAGCATATGTA+TGG 0.484529 1_2:+59207390 None:intergenic
CGAGCAGATGGGAGAGCGAC+GGG 0.486908 1_2:-59207878 Msa0080830:intron
AAGTTTCATTTCAACAAAGT+TGG 0.487593 1_2:-59210813 Msa0080830:five_prime_UTR
TTCACAATCCTTGTTCTCCC+CGG 0.489475 1_2:+59208569 None:intergenic
GAACTTAAAGATCAATTAGC+AGG 0.491351 1_2:-59207841 Msa0080830:CDS
TGCAAAATCCGGGGAGAACA+AGG 0.494274 1_2:-59208577 Msa0080830:CDS
AGGAAAGCAACAAACAGTTT+CGG 0.509158 1_2:-59207821 Msa0080830:CDS
GATTCAGCACATAAAGGAGT+TGG 0.509544 1_2:-59208862 Msa0080830:intron
ATTTATAGGACTTTGATCCC+TGG 0.512765 1_2:-59210886 Msa0080830:five_prime_UTR
TCATTCAAATCCTTTAACAA+AGG 0.512856 1_2:+59210738 None:intergenic
TATGTCCATGCTAGTCTTGG+TGG 0.514229 1_2:-59207740 Msa0080830:CDS
ACTGCGAAAATTATTGGATG+AGG 0.521280 1_2:-59208547 Msa0080830:CDS
TCATTGGAAGCTCAAGACTA+AGG 0.525004 1_2:-59208430 Msa0080830:CDS
CTCCTACAACAAACTTGAGA+AGG 0.526108 1_2:+59207652 None:intergenic
ACATACAAAAGAGGCAAAAG+AGG 0.527488 1_2:-59210838 Msa0080830:five_prime_UTR
GACTTTGATCCCTGGTCCAT+AGG 0.536840 1_2:-59210878 Msa0080830:five_prime_UTR
AGAGAAGATGAATAAGCTAC+TGG 0.539996 1_2:-59208508 Msa0080830:CDS
TAAAGAAACTATAACTAGAC+AGG 0.541041 1_2:-59210622 Msa0080830:intron
AAAGCAAAATCAGAATTTCT+GGG 0.542452 1_2:-59207791 Msa0080830:CDS
ACAGAAGGATCTTAAGGCAA+GGG 0.550488 1_2:-59208664 Msa0080830:CDS
AAAATCAGATCCTATGGACC+AGG 0.554506 1_2:+59210868 None:intergenic
TACAGAAGGATCTTAAGGCA+AGG 0.554800 1_2:-59208665 Msa0080830:CDS
CTGCGCTGATTGAGCTGATG+CGG 0.556870 1_2:+59208788 None:intergenic
TCAGACGCGCAAACTTCAAA+GGG 0.558261 1_2:-59208197 Msa0080830:intron
AAAGCATTTCACATGTGCGC+AGG 0.560995 1_2:-59207300 Msa0080830:three_prime_UTR
TTGTTTGTCGGAAATTGACA+TGG 0.561919 1_2:+59210773 None:intergenic
AAACCATTCCTTTGTTCACA+AGG 0.563095 1_2:-59207701 Msa0080830:three_prime_UTR
AATCCTTGTGAACAAAGGAA+TGG 0.563482 1_2:+59207698 None:intergenic
GCAGCTTGATAATTTACAGA+AGG 0.573568 1_2:-59208679 Msa0080830:CDS
GAAGTTGGAATTCTGTCTGC+AGG 0.579748 1_2:-59208230 Msa0080830:CDS
TATGTGAAACTAATCTGTGT+AGG 0.606402 1_2:-59207512 Msa0080830:three_prime_UTR
TCGAGCAGATGGGAGAGCGA+CGG 0.608995 1_2:-59207879 Msa0080830:intron
TAGTTCTCTAAGAGAGCATG+AGG 0.613433 1_2:-59208724 Msa0080830:CDS
ACAAGAATCCTTGTGAACAA+AGG 0.613946 1_2:+59207693 None:intergenic
GAGGAACGCGTAATTAGACT+AGG 0.621102 1_2:-59208705 Msa0080830:CDS
AAATACCACCAAGACTAGCA+TGG 0.627363 1_2:+59207735 None:intergenic
TGTGACCATAAAGTTACCAC+TGG 0.639898 1_2:-59207419 Msa0080830:three_prime_UTR
AATTGAGCGTGATATTATGG+AGG 0.642028 1_2:-59208604 Msa0080830:CDS
TGTTTGTCGGAAATTGACAT+GGG 0.647558 1_2:+59210774 None:intergenic
ATATGTATGGTAAGTGCCAG+TGG 0.650551 1_2:+59207403 None:intergenic
AAATCAGATCCTATGGACCA+GGG 0.663062 1_2:+59210869 None:intergenic
GCTCGTAATAGCTAGAGCAA+CGG 0.671851 1_2:-59208823 Msa0080830:CDS
AAACACAGTTGGAGAAACAA+CGG 0.679696 1_2:-59208285 Msa0080830:intron
GGAGGCTCTTGCAAAATCCG+GGG 0.684234 1_2:-59208586 Msa0080830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAATTAGAAAATAAT+TGG + chr1_2:59207490-59207509 None:intergenic 10.0%
!! ATATTAATAACAAAAAGTTT+AGG - chr1_2:59208947-59208966 Msa0080830:intron 10.0%
!!! TTATTTTGTTTTTCTCTTTT+TGG - chr1_2:59208337-59208356 Msa0080830:intron 15.0%
!! TATAAAAGAAAAAAGGTAAT+AGG + chr1_2:59208930-59208949 None:intergenic 15.0%
!!! ACATATTTTACTTAACAATA+AGG - chr1_2:59209034-59209053 Msa0080830:intron 15.0%
!!! TTAATTCTTCAATTTTTTCT+AGG - chr1_2:59209170-59209189 Msa0080830:intron 15.0%
!!! AAATTTTTGTATCAGTTTTA+CGG - chr1_2:59209304-59209323 Msa0080830:intron 15.0%
!! TTTGAATTCCAATGAAAATT+TGG + chr1_2:59207711-59207730 None:intergenic 20.0%
!!! ATAGTTTATTTTTGCTTACA+TGG - chr1_2:59207876-59207895 Msa0080830:intron 20.0%
!! ATTCAATTGCTTTCATTTAT+AGG - chr1_2:59207964-59207983 Msa0080830:intron 20.0%
!! ATGATAAAAAACAAAGCTTT+CGG - chr1_2:59208145-59208164 Msa0080830:intron 20.0%
!! AGTTATAGTTTCTTTAACAT+AGG + chr1_2:59208238-59208257 None:intergenic 20.0%
!!! TTACTACAATTTTTTTAGCA+TGG + chr1_2:59208363-59208382 None:intergenic 20.0%
!!! TTTTTTAGTACTGCAATTTA+TGG - chr1_2:59208453-59208472 Msa0080830:CDS 20.0%
!!! TTATGGATTATATTTTTCAC+AGG - chr1_2:59208470-59208489 Msa0080830:CDS 20.0%
!!! AAATTAATTTTAATGTAGGG+AGG - chr1_2:59209241-59209260 Msa0080830:intron 20.0%
!! GAACTTATAAATAAGAATTC+TGG + chr1_2:59209493-59209512 None:intergenic 20.0%
!! ACTTATAAGATATGATGTAT+AGG + chr1_2:59209672-59209691 None:intergenic 20.0%
!! TTTAAAGGTTAATGCATAAT+TGG + chr1_2:59209738-59209757 None:intergenic 20.0%
!!! TTTTTCTTCATTAAGGAATA+AGG + chr1_2:59209823-59209842 None:intergenic 20.0%
!!! AATTATTTGACCATTGTTTT+GGG - chr1_2:59210800-59210819 Msa0080830:five_prime_UTR 20.0%
! TTCACCATCTTCATTATTAT+TGG - chr1_2:59207544-59207563 Msa0080830:three_prime_UTR 25.0%
! TCAGTTTCATCATAATTGAA+AGG + chr1_2:59207652-59207671 None:intergenic 25.0%
!!! ATAACTTGTTTTCACGAAAA+GGG + chr1_2:59207814-59207833 None:intergenic 25.0%
!!! AATAACTTGTTTTCACGAAA+AGG + chr1_2:59207815-59207834 None:intergenic 25.0%
! TTGATGTTTACATACAAAAG+AGG - chr1_2:59208017-59208036 Msa0080830:intron 25.0%
! AAGTTTCATTTCAACAAAGT+TGG - chr1_2:59208051-59208070 Msa0080830:intron 25.0%
! TCATTCAAATCCTTTAACAA+AGG + chr1_2:59208129-59208148 None:intergenic 25.0%
! TAAAGAAACTATAACTAGAC+AGG - chr1_2:59208242-59208261 Msa0080830:CDS 25.0%
!! AGTATCAATCATTCTACTTT+TGG - chr1_2:59208393-59208412 Msa0080830:intron 25.0%
! AAATGCAAAGATTATGGAAA+TGG - chr1_2:59208503-59208522 Msa0080830:CDS 25.0%
! AAGATTATGGAAATGGAAAT+TGG - chr1_2:59208510-59208529 Msa0080830:CDS 25.0%
! TGGTAAATTGCAAAAGAAAT+TGG - chr1_2:59208530-59208549 Msa0080830:CDS 25.0%
! AACCACGAAAAGAAATAATA+AGG + chr1_2:59208624-59208643 None:intergenic 25.0%
! GTAACAAGATCCTAAAAAAT+GGG + chr1_2:59208841-59208860 None:intergenic 25.0%
! AGTAACAAGATCCTAAAAAA+TGG + chr1_2:59208842-59208861 None:intergenic 25.0%
!!! ATTAGTCTTAAGACTTTCTT+TGG + chr1_2:59208993-59209012 None:intergenic 25.0%
! AATTCAGTTCATATCTACAA+GGG + chr1_2:59209092-59209111 None:intergenic 25.0%
! ATTAACATCCTAGTTAGAAA+GGG + chr1_2:59209155-59209174 None:intergenic 25.0%
! AATTAACATCCTAGTTAGAA+AGG + chr1_2:59209156-59209175 None:intergenic 25.0%
!!! ATAATTTTTCTAGCCAGTAA+TGG - chr1_2:59209588-59209607 Msa0080830:intron 25.0%
! CTAGAGTACAATCTATTTAA+AGG + chr1_2:59209753-59209772 None:intergenic 25.0%
!! TGTCATCTTTTTCTTCATTA+AGG + chr1_2:59209830-59209849 None:intergenic 25.0%
! ATTCTTTGTAACTAAAGTCT+TGG - chr1_2:59209949-59209968 Msa0080830:intron 25.0%
!!! AATATTGATTCAGCACATAA+AGG - chr1_2:59209996-59210015 Msa0080830:intron 25.0%
! TAATTTACAGAAGGATCTTA+AGG - chr1_2:59210194-59210213 Msa0080830:intron 25.0%
! TTCATCTTCTCTATATTCTT+AGG + chr1_2:59210348-59210367 None:intergenic 25.0%
! TGATGAAATAGTTAGACTTA+AGG - chr1_2:59210389-59210408 Msa0080830:intron 25.0%
! TATATGAACGAGTAATAACA+CGG + chr1_2:59210496-59210515 None:intergenic 25.0%
! TTATTACTCGTTCATATACT+GGG - chr1_2:59210498-59210517 Msa0080830:intron 25.0%
!! AATCCATTTAAGTTCATTGA+TGG - chr1_2:59210550-59210569 Msa0080830:intron 25.0%
! AATCCATCAATGAACTTAAA+TGG + chr1_2:59210556-59210575 None:intergenic 25.0%
!! AGGAAATGCTTAAATTTTTG+TGG - chr1_2:59210730-59210749 Msa0080830:CDS 25.0%
!! GAATTATTTGACCATTGTTT+TGG - chr1_2:59210799-59210818 Msa0080830:five_prime_UTR 25.0%
!!! TAAGGTTTACTTTTCATTGA+TGG - chr1_2:59210862-59210881 Msa0080830:five_prime_UTR 25.0%
!!! AAGGTTTACTTTTCATTGAT+GGG - chr1_2:59210863-59210882 Msa0080830:five_prime_UTR 25.0%
!!! GAAATTCTGATTTTGCTTTT+CGG + chr1_2:59211072-59211091 None:intergenic 25.0%
! AAAAGCAAAATCAGAATTTC+TGG - chr1_2:59211072-59211091 Msa0080830:intron 25.0%
! AAAGCAAAATCAGAATTTCT+GGG - chr1_2:59211073-59211092 Msa0080830:intron 25.0%
! AAAGTAGGCCAAATTTTCAT+TGG - chr1_2:59207700-59207719 Msa0080830:three_prime_UTR 30.0%
AACTACCATATTCACATGTA+GGG - chr1_2:59207925-59207944 Msa0080830:intron 30.0%
AACATCAAAATCAGATCCTA+TGG + chr1_2:59208005-59208024 None:intergenic 30.0%
TTCAGTTGATCCTTTGTTAA+AGG - chr1_2:59208116-59208135 Msa0080830:intron 30.0%
AGAGACAAATGCAAAGATTA+TGG - chr1_2:59208497-59208516 Msa0080830:CDS 30.0%
!! CACCTTATTATTTCTTTTCG+TGG - chr1_2:59208619-59208638 Msa0080830:CDS 30.0%
!! TTCATTTTAGCATATCCCAT+TGG - chr1_2:59208872-59208891 Msa0080830:intron 30.0%
AACAAAAAGTTTAGGTGAGA+TGG - chr1_2:59208955-59208974 Msa0080830:intron 30.0%
TAAGGTCTTTACATTAGTAG+CGG - chr1_2:59209052-59209071 Msa0080830:intron 30.0%
GAATTCAGTTCATATCTACA+AGG + chr1_2:59209093-59209112 None:intergenic 30.0%
! ATAAGAGAGTTTTCCAACAA+TGG + chr1_2:59209123-59209142 None:intergenic 30.0%
TGTGGTAATTCAGAAAAATG+TGG + chr1_2:59209196-59209215 None:intergenic 30.0%
!! TTGATTTGGTAATAAGCTTG+TGG + chr1_2:59209214-59209233 None:intergenic 30.0%
! TTTTAATGTAGGGAGGAAAT+TGG - chr1_2:59209248-59209267 Msa0080830:intron 30.0%
TTTAATGTAGGGAGGAAATT+GGG - chr1_2:59209249-59209268 Msa0080830:intron 30.0%
! AGTGATTTTCCAACTTAGAA+TGG + chr1_2:59209281-59209300 None:intergenic 30.0%
TAGCCAATAGTACATTCAAA+TGG - chr1_2:59209362-59209381 Msa0080830:intron 30.0%
ATAAGTGACTTCAATAGTGA+AGG + chr1_2:59209515-59209534 None:intergenic 30.0%
ATCACGTGAGTATATTCAAT+AGG - chr1_2:59209557-59209576 Msa0080830:intron 30.0%
TCACGTGAGTATATTCAATA+GGG - chr1_2:59209558-59209577 Msa0080830:intron 30.0%
TCATTACTTCATCGATAACT+TGG + chr1_2:59209703-59209722 None:intergenic 30.0%
! TCGATGAAGTAATGAACTTT+TGG - chr1_2:59209708-59209727 Msa0080830:intron 30.0%
!! ATCTAATGCAGTTTTGGTAA+TGG + chr1_2:59209864-59209883 None:intergenic 30.0%
TATGTATCATAATGTTCCGT+TGG + chr1_2:59209907-59209926 None:intergenic 30.0%
CTTCGAACTTCAAAAAGAAT+TGG - chr1_2:59210107-59210126 Msa0080830:intron 30.0%
TAGAATTGAGCGTGATATTA+TGG - chr1_2:59210257-59210276 Msa0080830:intron 30.0%
TTGTGAACTGCGAAAATTAT+TGG - chr1_2:59210311-59210330 Msa0080830:CDS 30.0%
ATATGAACGAGTAATAACAC+GGG + chr1_2:59210495-59210514 None:intergenic 30.0%
GTTATTACTCGTTCATATAC+TGG - chr1_2:59210497-59210516 Msa0080830:intron 30.0%
!! GGCTTTCTTTTCTTTATTTG+AGG - chr1_2:59210519-59210538 Msa0080830:intron 30.0%
!! GAACTTAAATGGATTAGCTA+TGG + chr1_2:59210545-59210564 None:intergenic 30.0%
!!! GCACTCATTTTGATTCATTT+AGG - chr1_2:59210710-59210729 Msa0080830:CDS 30.0%
! TTTTTGTGGTTACAGTGAAT+TGG - chr1_2:59210744-59210763 Msa0080830:CDS 30.0%
! TTTTGTGGTTACAGTGAATT+GGG - chr1_2:59210745-59210764 Msa0080830:CDS 30.0%
!!! CTGTTATAGATCTGCTTTTT+GGG - chr1_2:59210768-59210787 Msa0080830:CDS 30.0%
TAAATTCTTGCCCAAAACAA+TGG + chr1_2:59210813-59210832 None:intergenic 30.0%
GCATTTAGATAAGAAACACT+TGG - chr1_2:59210834-59210853 Msa0080830:five_prime_UTR 30.0%
AAGAAACACTTGGACAAATA+AGG - chr1_2:59210844-59210863 Msa0080830:five_prime_UTR 30.0%
! TGATTTCACTAAGTTGACTA+AGG + chr1_2:59210944-59210963 None:intergenic 30.0%
GAACTTAAAGATCAATTAGC+AGG - chr1_2:59211023-59211042 Msa0080830:intron 30.0%
ACAAGGATTCTTGTATATAG+AGG - chr1_2:59211180-59211199 Msa0080830:intron 30.0%
!! AACAAACTTGAGAAGGTATT+AGG + chr1_2:59211208-59211227 None:intergenic 30.0%
!!! GAGTAAAGAGAAGTTTTAGA+AGG - chr1_2:59211232-59211251 Msa0080830:intron 30.0%
TATGTGAAACTAATCTGTGT+AGG - chr1_2:59211352-59211371 Msa0080830:intron 30.0%
! TAGGTGCGCTTATATATTTT+AGG - chr1_2:59211371-59211390 Msa0080830:intron 30.0%
GAAGTAGCATAGTTACTTAC+CGG + chr1_2:59207418-59207437 None:intergenic 35.0%
TGCGAAAAAATAGTGAAACG+AGG + chr1_2:59207440-59207459 None:intergenic 35.0%
GGCACCAATAATAATGAAGA+TGG + chr1_2:59207551-59207570 None:intergenic 35.0%
AATGACAGATAGACACATGA+AGG - chr1_2:59207606-59207625 Msa0080830:three_prime_UTR 35.0%
ATGACAGATAGACACATGAA+GGG - chr1_2:59207607-59207626 Msa0080830:three_prime_UTR 35.0%
TCTATGCCATGGAAAAAAGT+AGG - chr1_2:59207685-59207704 Msa0080830:three_prime_UTR 35.0%
!!! ATTTGGCCTACTTTTTTCCA+TGG + chr1_2:59207694-59207713 None:intergenic 35.0%
CAACTACCATATTCACATGT+AGG - chr1_2:59207924-59207943 Msa0080830:intron 35.0%
TCATTCCCTACATGTGAATA+TGG + chr1_2:59207933-59207952 None:intergenic 35.0%
ATTTATAGGACTTTGATCCC+TGG - chr1_2:59207978-59207997 Msa0080830:intron 35.0%
ACATACAAAAGAGGCAAAAG+AGG - chr1_2:59208026-59208045 Msa0080830:intron 35.0%
TGTTTGTCGGAAATTGACAT+GGG + chr1_2:59208093-59208112 None:intergenic 35.0%
TTGTTTGTCGGAAATTGACA+TGG + chr1_2:59208094-59208113 None:intergenic 35.0%
! ATCAACTGAAGCTTGTTTGT+CGG + chr1_2:59208106-59208125 None:intergenic 35.0%
!!! TTCTACTTTTGGAGTCTTTG+TGG - chr1_2:59208404-59208423 Msa0080830:intron 35.0%
AGAAAAAAATGAGCAGCTTC+AGG - chr1_2:59208554-59208573 Msa0080830:CDS 35.0%
CGTGGTTTATGAATATCTCT+TGG - chr1_2:59208637-59208656 Msa0080830:CDS 35.0%
GAATCGTGCAAAACAAAAAG+TGG + chr1_2:59208700-59208719 None:intergenic 35.0%
!!! GTTTGCTTTTCTAGCTGAAA+TGG - chr1_2:59208740-59208759 Msa0080830:CDS 35.0%
!!! ACACTAGATGCCCATTTTTT+AGG - chr1_2:59208828-59208847 Msa0080830:CDS 35.0%
AGAAGGTTGAGTAGATACTT+TGG - chr1_2:59208904-59208923 Msa0080830:intron 35.0%
GAATTCTTATCGACCATTGT+TGG - chr1_2:59209107-59209126 Msa0080830:intron 35.0%
TCACTTATTGTACTGCAACA+TGG - chr1_2:59209527-59209546 Msa0080830:intron 35.0%
TTATTGTACTGCAACATGGA+AGG - chr1_2:59209531-59209550 Msa0080830:intron 35.0%
TGAGTATATTCAATAGGGAC+TGG - chr1_2:59209563-59209582 Msa0080830:intron 35.0%
GAGTATATTCAATAGGGACT+GGG - chr1_2:59209564-59209583 Msa0080830:intron 35.0%
TATAAGATCCTCTCCATTAC+TGG + chr1_2:59209604-59209623 None:intergenic 35.0%
! GTCAGAATCTAATGCAGTTT+TGG + chr1_2:59209870-59209889 None:intergenic 35.0%
! ACTAGTTCTCTATTGACCAA+CGG - chr1_2:59209888-59209907 Msa0080830:intron 35.0%
!!! CTTTTTGAAGTTCGAAGCAT+TGG + chr1_2:59210104-59210123 None:intergenic 35.0%
! GCAGCTTGATAATTTACAGA+AGG - chr1_2:59210185-59210204 Msa0080830:intron 35.0%
AATTGAGCGTGATATTATGG+AGG - chr1_2:59210260-59210279 Msa0080830:intron 35.0%
ACTGCGAAAATTATTGGATG+AGG - chr1_2:59210317-59210336 Msa0080830:CDS 35.0%
AGAGAAGATGAATAAGCTAC+TGG - chr1_2:59210356-59210375 Msa0080830:CDS 35.0%
! GAATAAGCTACTGGTTGTTA+AGG - chr1_2:59210365-59210384 Msa0080830:CDS 35.0%
TTAAGATCATGTCTGCTCAT+TGG - chr1_2:59210418-59210437 Msa0080830:intron 35.0%
GACTAAGGAATTAGAATCAC+AGG - chr1_2:59210449-59210468 Msa0080830:intron 35.0%
! GATGGATTTCAAAACACAGT+TGG - chr1_2:59210568-59210587 Msa0080830:intron 35.0%
AAACACAGTTGGAGAAACAA+CGG - chr1_2:59210579-59210598 Msa0080830:intron 35.0%
!! GCTGTTATAGATCTGCTTTT+TGG - chr1_2:59210767-59210786 Msa0080830:CDS 35.0%
!! TTTTCATTGATGGGCATGAT+TGG - chr1_2:59210872-59210891 Msa0080830:five_prime_UTR 35.0%
AGGAAAGCAACAAACAGTTT+CGG - chr1_2:59211043-59211062 Msa0080830:intron 35.0%
! CATCACAATTTTGAATCCAG+AGG + chr1_2:59211102-59211121 None:intergenic 35.0%
!! TCTTGGTGGTATTTTCAAAG+CGG - chr1_2:59211138-59211157 Msa0080830:intron 35.0%
AAACCATTCCTTTGTTCACA+AGG - chr1_2:59211163-59211182 Msa0080830:intron 35.0%
AATCCTTGTGAACAAAGGAA+TGG + chr1_2:59211169-59211188 None:intergenic 35.0%
ACAAGAATCCTTGTGAACAA+AGG + chr1_2:59211174-59211193 None:intergenic 35.0%
!! TACCTTCTCAAGTTTGTTGT+AGG - chr1_2:59211210-59211229 Msa0080830:intron 35.0%
TGTTTATCGCATCATTAAGC+TGG - chr1_2:59211402-59211421 Msa0080830:intron 35.0%
GACTAAAACCAGCATATGTA+TGG + chr1_2:59211477-59211496 None:intergenic 35.0%
! GGTTAAAAAGTCAAGGTGTT+TGG - chr1_2:59211585-59211604 Msa0080830:five_prime_UTR 35.0%
GAGTGTGATGTGATGAGTTT+AGG + chr1_2:59207257-59207276 Msa0080820:three_prime_UTR 40.0%
AAATCAGATCCTATGGACCA+GGG + chr1_2:59207998-59208017 None:intergenic 40.0%
AAAATCAGATCCTATGGACC+AGG + chr1_2:59207999-59208018 None:intergenic 40.0%
! GTCTTTAGCTTCTGAGTTGA+AGG - chr1_2:59208179-59208198 Msa0080830:intron 40.0%
!!! TTTTGGAGTCTTTGTGGTTG+TGG - chr1_2:59208410-59208429 Msa0080830:intron 40.0%
! TTTGGAGTCTTTGTGGTTGT+GGG - chr1_2:59208411-59208430 Msa0080830:intron 40.0%
TTCAAACTCTTCTGCTGAGA+AGG - chr1_2:59208578-59208597 Msa0080830:CDS 40.0%
!! TAGCATATCCCATTGGTCTT+TGG - chr1_2:59208879-59208898 Msa0080830:intron 40.0%
GACTTTCTTTGGCCAAGTAA+AGG + chr1_2:59208982-59209001 None:intergenic 40.0%
GGAAAACTCTCTTATTCTCG+TGG - chr1_2:59209128-59209147 Msa0080830:intron 40.0%
GGGCCATTTGAATGTACTAT+TGG + chr1_2:59209368-59209387 None:intergenic 40.0%
TGCAAATATGGGCACAACAT+AGG + chr1_2:59209442-59209461 None:intergenic 40.0%
AAGAATTCTGGCAGCATCTA+TGG + chr1_2:59209481-59209500 None:intergenic 40.0%
!! TTTTCTAGCCAGTAATGGAG+AGG - chr1_2:59209593-59209612 Msa0080830:intron 40.0%
GATTCAGCACATAAAGGAGT+TGG - chr1_2:59210002-59210021 Msa0080830:intron 40.0%
! TAGTTCTCTAAGAGAGCATG+AGG - chr1_2:59210140-59210159 Msa0080830:intron 40.0%
TACAGAAGGATCTTAAGGCA+AGG - chr1_2:59210199-59210218 Msa0080830:intron 40.0%
ACAGAAGGATCTTAAGGCAA+GGG - chr1_2:59210200-59210219 Msa0080830:intron 40.0%
TCATTGGAAGCTCAAGACTA+AGG - chr1_2:59210434-59210453 Msa0080830:intron 40.0%
TAATAACACGGGCAAAGATC+AGG + chr1_2:59210484-59210503 None:intergenic 40.0%
!! GAAGAAGAGAGTGTTGAAGT+TGG - chr1_2:59210619-59210638 Msa0080830:intron 40.0%
GACTAAGGATGTTCAGATGA+TGG + chr1_2:59210929-59210948 None:intergenic 40.0%
!! TGTATGTGTTTTCGAGCAGA+TGG - chr1_2:59210974-59210993 Msa0080830:intron 40.0%
!! GTATGTGTTTTCGAGCAGAT+GGG - chr1_2:59210975-59210994 Msa0080830:intron 40.0%
AAATACCACCAAGACTAGCA+TGG + chr1_2:59211132-59211151 None:intergenic 40.0%
CTCCTACAACAAACTTGAGA+AGG + chr1_2:59211215-59211234 None:intergenic 40.0%
TGTGACCATAAAGTTACCAC+TGG - chr1_2:59211445-59211464 Msa0080830:intron 40.0%
AAGTGCCAGTGGTAACTTTA+TGG + chr1_2:59211453-59211472 None:intergenic 40.0%
ATATGTATGGTAAGTGCCAG+TGG + chr1_2:59211464-59211483 None:intergenic 40.0%
GCACATGTGAAATGCTTTCA+AGG + chr1_2:59211562-59211581 None:intergenic 40.0%
!! GAAAAACCAGAAAGCACTGA+TGG + chr1_2:59211621-59211640 None:intergenic 40.0%
ACCAGTTCAAACGCAGAAAC+CGG - chr1_2:59207396-59207415 Msa0080830:three_prime_UTR 45.0%
! CTTCTGAGTTGAAGGAGCTT+AGG - chr1_2:59208187-59208206 Msa0080830:intron 45.0%
TTGGAGTCTTTGTGGTTGTG+GGG - chr1_2:59208412-59208431 Msa0080830:intron 45.0%
CCTTCTCACCAAAGACCAAT+GGG + chr1_2:59208890-59208909 None:intergenic 45.0%
ACCTTCTCACCAAAGACCAA+TGG + chr1_2:59208891-59208910 None:intergenic 45.0%
AGGTGAGATGGACCTTTACT+TGG - chr1_2:59208967-59208986 Msa0080830:intron 45.0%
TGTAGGGAGGAAATTGGGAT+TGG - chr1_2:59209254-59209273 Msa0080830:intron 45.0%
!! GGGATTGGTCCATTCTAAGT+TGG - chr1_2:59209269-59209288 Msa0080830:intron 45.0%
AAACTACCAACGCTCTAGCA+CGG + chr1_2:59209394-59209413 None:intergenic 45.0%
GGGTAGCATGGTGCAAATAT+GGG + chr1_2:59209453-59209472 None:intergenic 45.0%
TGGGTAGCATGGTGCAAATA+TGG + chr1_2:59209454-59209473 None:intergenic 45.0%
TCTATGGCAATTGGGTAGCA+TGG + chr1_2:59209465-59209484 None:intergenic 45.0%
TGGCAGCATCTATGGCAATT+GGG + chr1_2:59209473-59209492 None:intergenic 45.0%
GCTCGTAATAGCTAGAGCAA+CGG - chr1_2:59210041-59210060 Msa0080830:intron 45.0%
GAGGAACGCGTAATTAGACT+AGG - chr1_2:59210159-59210178 Msa0080830:intron 45.0%
ATGGAGGCTCTTGCAAAATC+CGG - chr1_2:59210276-59210295 Msa0080830:intron 45.0%
TTCACAATCCTTGTTCTCCC+CGG + chr1_2:59210298-59210317 None:intergenic 45.0%
GAAGTTGGAATTCTGTCTGC+AGG - chr1_2:59210634-59210653 Msa0080830:CDS 45.0%
TCAGACGCGCAAACTTCAAA+GGG - chr1_2:59210667-59210686 Msa0080830:CDS 45.0%
! GTCTATGTCCATGCTAGTCT+TGG - chr1_2:59211121-59211140 Msa0080830:intron 45.0%
!! TATGTCCATGCTAGTCTTGG+TGG - chr1_2:59211124-59211143 Msa0080830:intron 45.0%
ATGCAGTATGTAGCAGCATC+AGG - chr1_2:59211304-59211323 Msa0080830:intron 45.0%
GGCACTTACCATACATATGC+TGG - chr1_2:59211466-59211485 Msa0080830:intron 45.0%
!!! ATGCTGGTTTTAGTCGCTGA+TGG - chr1_2:59211482-59211501 Msa0080830:five_prime_UTR 45.0%
! AAAGCATTTCACATGTGCGC+AGG - chr1_2:59211564-59211583 Msa0080830:five_prime_UTR 45.0%
GTGCGCAGGTTAAAAAGTCA+AGG - chr1_2:59211578-59211597 Msa0080830:five_prime_UTR 45.0%
!! TAAATTACAATAAAAAAAAA+TGG + chr1_2:59207572-59207591 None:intergenic 5.0%
!! TTATTAATATAAAAGAAAAA+AGG + chr1_2:59208937-59208956 None:intergenic 5.0%
!!! TTAATTTTAATTTTTTGATT+TGG + chr1_2:59209228-59209247 None:intergenic 5.0%
!!! ATTAAAATTAATTTTAATGT+AGG - chr1_2:59209237-59209256 Msa0080830:intron 5.0%
!!! TTAAAATTAATTTTAATGTA+GGG - chr1_2:59209238-59209257 Msa0080830:intron 5.0%
! ACCGGTTTCTGCGTTTGAAC+TGG + chr1_2:59207400-59207419 None:intergenic 50.0%
GCTTGATGCACTCTATGCCA+TGG - chr1_2:59207674-59207693 Msa0080830:three_prime_UTR 50.0%
GACTTTGATCCCTGGTCCAT+AGG - chr1_2:59207986-59208005 Msa0080830:intron 50.0%
GAAGGAGCTTAGGAGTCGTT+TGG - chr1_2:59208197-59208216 Msa0080830:intron 50.0%
TCTTTGTGGTTGTGGGGTCA+AGG - chr1_2:59208418-59208437 Msa0080830:CDS 50.0%
!! CCCATTGGTCTTTGGTGAGA+AGG - chr1_2:59208887-59208906 Msa0080830:intron 50.0%
CTCGTGGTCCCTTTCTAACT+AGG - chr1_2:59209144-59209163 Msa0080830:intron 50.0%
AACTACCAACGCTCTAGCAC+GGG + chr1_2:59209393-59209412 None:intergenic 50.0%
CTGGCAGCATCTATGGCAAT+TGG + chr1_2:59209474-59209493 None:intergenic 50.0%
TGGAGGCTCTTGCAAAATCC+GGG - chr1_2:59210277-59210296 Msa0080830:intron 50.0%
TGCAAAATCCGGGGAGAACA+AGG - chr1_2:59210287-59210306 Msa0080830:CDS 50.0%
CTCAGACGCGCAAACTTCAA+AGG - chr1_2:59210666-59210685 Msa0080830:CDS 50.0%
!! CAGAATTTCTGGGACACCTC+TGG - chr1_2:59211083-59211102 Msa0080830:intron 50.0%
TGATCGCCATCAGTGCTTTC+TGG - chr1_2:59211612-59211631 Msa0080830:five_prime_UTR 50.0%
! TAGGAGTCGTTTGGCTTCGC+AGG - chr1_2:59208206-59208225 Msa0080830:CDS 55.0%
!! CTGCGCTGATTGAGCTGATG+CGG + chr1_2:59210079-59210098 None:intergenic 55.0%
GGAGGCTCTTGCAAAATCCG+GGG - chr1_2:59210278-59210297 Msa0080830:intron 55.0%
! GAAACAACGGCGTGCTGATC+AGG - chr1_2:59210592-59210611 Msa0080830:intron 55.0%
CCAACGCTCTAGCACGGGAA+GGG + chr1_2:59209388-59209407 None:intergenic 60.0%
ACCAACGCTCTAGCACGGGA+AGG + chr1_2:59209389-59209408 None:intergenic 60.0%
TCGAGCAGATGGGAGAGCGA+CGG - chr1_2:59210985-59211004 Msa0080830:intron 60.0%
CCCTTCCCGTGCTAGAGCGT+TGG - chr1_2:59209385-59209404 Msa0080830:intron 65.0%
CGAGCAGATGGGAGAGCGAC+GGG - chr1_2:59210986-59211005 Msa0080830:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59207245 59211641 59207245 ID=Msa0080830;Name=Msa0080830
chr1_2 mRNA 59207245 59211641 59207245 ID=Msa0080830-mRNA-1;Parent=Msa0080830;Name=Msa0080830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=320|1|1|1|0.8|0.66|6|478|337
chr1_2 exon 59207245 59207893 59207245 ID=Msa0080830-mRNA-1:exon:19169;Parent=Msa0080830-mRNA-1
chr1_2 exon 59208198 59208299 59208198 ID=Msa0080830-mRNA-1:exon:19168;Parent=Msa0080830-mRNA-1
chr1_2 exon 59208416 59208877 59208416 ID=Msa0080830-mRNA-1:exon:19167;Parent=Msa0080830-mRNA-1
chr1_2 exon 59210287 59210394 59210287 ID=Msa0080830-mRNA-1:exon:19166;Parent=Msa0080830-mRNA-1
chr1_2 exon 59210623 59210940 59210623 ID=Msa0080830-mRNA-1:exon:19165;Parent=Msa0080830-mRNA-1
chr1_2 exon 59211469 59211641 59211469 ID=Msa0080830-mRNA-1:exon:19164;Parent=Msa0080830-mRNA-1
chr1_2 five_prime_UTR 59211469 59211641 59211469 ID=Msa0080830-mRNA-1:five_prime_utr;Parent=Msa0080830-mRNA-1
chr1_2 five_prime_UTR 59210794 59210940 59210794 ID=Msa0080830-mRNA-1:five_prime_utr;Parent=Msa0080830-mRNA-1
chr1_2 CDS 59210623 59210793 59210623 ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2 CDS 59210287 59210394 59210287 ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2 CDS 59208416 59208877 59208416 ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2 CDS 59208198 59208299 59208198 ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2 CDS 59207723 59207893 59207723 ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2 three_prime_UTR 59207245 59207722 59207245 ID=Msa0080830-mRNA-1:three_prime_utr;Parent=Msa0080830-mRNA-1
Gene Sequence

>Msa0080830

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGGAGAAACGTTGTGTCTTTAGCTTCTGAGTTGAAGGAGCTTAGGAGTCGTTTGGCTTCGCAGGAACAATCCTATGTTAAAGAAACTATAACTAGACAGGAAGCAGAGACAAATGCAAAGATTATGGAAATGGAAATTGGTAAATTGCAAAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTTGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAAGATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGTTGGAGAAACAACGGCGTGCTGATCAGGATCTGAAGAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGATGGGAGAGCGACGGGACAAAGCTATTAAAGAACTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>Msa0080830

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETITRQEAETNAKIMEMEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR*