AlfalfaGEDB | Msa0080830

M. sativa cultivar zhongmu-4 / Msa0080830

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080830	XP_013469086.1	97.329	337	9	0	1	337	1	337	0.0	652

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080830	sp\|F4K1B4\|NEAP2_ARATH	70.270	333	94	2	7	337	6	335	2.02e-163	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080830	A0A072VM81	97.329	337	9	0	1	337	1	337	0.0	652

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0080830	0.812695	3.724296e-51	-8.615850e-47
Msa0002680	Msa0080830	0.802729	4.885455e-49	-8.615850e-47
Msa0003220	Msa0080830	0.826509	2.608745e-54	-8.615850e-47
Msa0003400	Msa0080830	0.829316	5.510343e-55	-8.615850e-47
Msa0003630	Msa0080830	0.816442	5.519006e-52	-8.615850e-47
Msa0005270	Msa0080830	0.832260	1.046519e-55	-8.615850e-47
Msa0005620	Msa0080830	0.813091	3.050503e-51	-8.615850e-47
Msa0006110	Msa0080830	0.828593	8.247740e-55	-8.615850e-47
Msa0007990	Msa0080830	0.809434	1.895671e-50	-8.615850e-47
Msa0008220	Msa0080830	0.818747	1.667873e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080830	MtrunA17_Chr1g0193141	97.329	337	9	0	1	337	1	337	0.0	652

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080830	AT5G26770.1	70.270	333	94	2	7	337	6	335	2.05e-164	462
Msa0080830	AT5G26770.2	70.270	333	94	2	7	337	6	335	2.05e-164	462
Msa0080830	AT5G26770.6	65.730	356	94	3	7	337	6	358	9.01e-159	448
Msa0080830	AT5G26770.5	65.730	356	94	3	7	337	6	358	9.01e-159	448
Msa0080830	AT5G26770.3	64.264	333	94	3	7	337	6	315	1.28e-144	411
Msa0080830	AT1G09470.1	61.468	327	125	1	11	337	11	336	3.09e-136	390
Msa0080830	AT5G26770.4	69.643	280	85	0	7	286	6	285	1.37e-134	385
Msa0080830	AT3G05830.3	63.314	338	121	3	1	337	1	336	5.80e-133	382
Msa0080830	AT3G05830.1	63.314	338	121	3	1	337	1	336	5.80e-133	382
Msa0080830	AT1G09470.2	60.245	327	128	2	11	337	11	335	1.01e-129	374

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Find 88 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAATCAGAATTTC+TGG	0.195429	1_2:-59207792	Msa0080830:CDS
AAAATCAGATCCTATGGACC+AGG	0.554506	1_2:+59210868	None:intergenic
AAACACAGTTGGAGAAACAA+CGG	0.679696	1_2:-59208285	Msa0080830:intron
AAACCATTCCTTTGTTCACA+AGG	0.563095	1_2:-59207701	Msa0080830:three_prime_UTR
AAAGCAAAATCAGAATTTCT+GGG	0.542452	1_2:-59207791	Msa0080830:CDS
AAAGCATTTCACATGTGCGC+AGG	0.560995	1_2:-59207300	Msa0080830:three_prime_UTR
AAATACCACCAAGACTAGCA+TGG	0.627363	1_2:+59207735	None:intergenic
AAATCAGATCCTATGGACCA+GGG	0.663062	1_2:+59210869	None:intergenic
AAATGCAAAGATTATGGAAA+TGG	0.386311	1_2:-59210361	Msa0080830:CDS
AACAAACTTGAGAAGGTATT+AGG	0.310751	1_2:+59207659	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTACCATATTCACATGTA+GGG	-	chr1_2:59207925-59207944	Msa0080830:intron	30.0%
AACATCAAAATCAGATCCTA+TGG	+	chr1_2:59208005-59208024	None:intergenic	30.0%
TTCAGTTGATCCTTTGTTAA+AGG	-	chr1_2:59208116-59208135	Msa0080830:intron	30.0%
AGAGACAAATGCAAAGATTA+TGG	-	chr1_2:59208497-59208516	Msa0080830:CDS	30.0%
AACAAAAAGTTTAGGTGAGA+TGG	-	chr1_2:59208955-59208974	Msa0080830:intron	30.0%
TAAGGTCTTTACATTAGTAG+CGG	-	chr1_2:59209052-59209071	Msa0080830:intron	30.0%
GAATTCAGTTCATATCTACA+AGG	+	chr1_2:59209093-59209112	None:intergenic	30.0%
TGTGGTAATTCAGAAAAATG+TGG	+	chr1_2:59209196-59209215	None:intergenic	30.0%
TTTAATGTAGGGAGGAAATT+GGG	-	chr1_2:59209249-59209268	Msa0080830:intron	30.0%
TAGCCAATAGTACATTCAAA+TGG	-	chr1_2:59209362-59209381	Msa0080830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59207245	59211641	59207245	ID=Msa0080830;Name=Msa0080830
chr1_2	mRNA	59207245	59211641	59207245	ID=Msa0080830-mRNA-1;Parent=Msa0080830;Name=Msa0080830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=320\|1\|1\|1\|0.8\|0.66\|6\|478\|337
chr1_2	exon	59207245	59207893	59207245	ID=Msa0080830-mRNA-1:exon:19169;Parent=Msa0080830-mRNA-1
chr1_2	exon	59208198	59208299	59208198	ID=Msa0080830-mRNA-1:exon:19168;Parent=Msa0080830-mRNA-1
chr1_2	exon	59208416	59208877	59208416	ID=Msa0080830-mRNA-1:exon:19167;Parent=Msa0080830-mRNA-1
chr1_2	exon	59210287	59210394	59210287	ID=Msa0080830-mRNA-1:exon:19166;Parent=Msa0080830-mRNA-1
chr1_2	exon	59210623	59210940	59210623	ID=Msa0080830-mRNA-1:exon:19165;Parent=Msa0080830-mRNA-1
chr1_2	exon	59211469	59211641	59211469	ID=Msa0080830-mRNA-1:exon:19164;Parent=Msa0080830-mRNA-1
chr1_2	five_prime_UTR	59211469	59211641	59211469	ID=Msa0080830-mRNA-1:five_prime_utr;Parent=Msa0080830-mRNA-1
chr1_2	five_prime_UTR	59210794	59210940	59210794	ID=Msa0080830-mRNA-1:five_prime_utr;Parent=Msa0080830-mRNA-1
chr1_2	CDS	59210623	59210793	59210623	ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2	CDS	59210287	59210394	59210287	ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2	CDS	59208416	59208877	59208416	ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2	CDS	59208198	59208299	59208198	ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2	CDS	59207723	59207893	59207723	ID=Msa0080830-mRNA-1:cds;Parent=Msa0080830-mRNA-1
chr1_2	three_prime_UTR	59207245	59207722	59207245	ID=Msa0080830-mRNA-1:three_prime_utr;Parent=Msa0080830-mRNA-1

Gene Sequence

>Msa0080830

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGGAGAAACGTTGTGTCTTTAGCTTCTGAGTTGAAGGAGCTTAGGAGTCGTTTGGCTTCGCAGGAACAATCCTATGTTAAAGAAACTATAACTAGACAGGAAGCAGAGACAAATGCAAAGATTATGGAAATGGAAATTGGTAAATTGCAAAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTTGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAAGATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGTTGGAGAAACAACGGCGTGCTGATCAGGATCTGAAGAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGATGGGAGAGCGACGGGACAAAGCTATTAAAGAACTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>Msa0080830

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETITRQEAETNAKIMEMEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR*