Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173070 | XP_003591197.1 | 26.337 | 243 | 153 | 6 | 11 | 249 | 126 | 346 | 5.23e-13 | 81.3 |
| Msa0173070 | XP_003591197.1 | 99.658 | 292 | 1 | 0 | 1 | 292 | 242 | 533 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173070 | sp|Q9SLX0|IMA1B_ORYSJ | 84.828 | 290 | 42 | 2 | 1 | 290 | 246 | 533 | 3.32e-180 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173070 | G7I9F7 | 26.337 | 243 | 153 | 6 | 11 | 249 | 126 | 346 | 2.50e-13 | 81.3 |
| Msa0173070 | G7I9F7 | 99.658 | 292 | 1 | 0 | 1 | 292 | 242 | 533 | 0.0 | 601 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0173070 | 0.822020 | 2.961734e-53 | -8.615850e-47 |
| Msa0021210 | Msa0173070 | 0.822196 | 2.695677e-53 | -8.615850e-47 |
| Msa0026430 | Msa0173070 | 0.824737 | 6.863161e-54 | -8.615850e-47 |
| Msa0026910 | Msa0173070 | 0.838681 | 2.488608e-57 | -8.615850e-47 |
| Msa0029630 | Msa0173070 | 0.818956 | 1.495589e-52 | -8.615850e-47 |
| Msa0034970 | Msa0173070 | 0.807159 | 5.792426e-50 | -8.615850e-47 |
| Msa0043980 | Msa0173070 | 0.832650 | 8.376936e-56 | -8.615850e-47 |
| Msa0044000 | Msa0173070 | 0.808252 | 3.393719e-50 | -8.615850e-47 |
| Msa0051630 | Msa0173070 | 0.827521 | 1.494217e-54 | -8.615850e-47 |
| Msa0051740 | Msa0173070 | 0.820449 | 6.818209e-53 | -8.615850e-47 |
| Msa0051750 | Msa0173070 | 0.832418 | 9.561818e-56 | -8.615850e-47 |
| Msa0069420 | Msa0173070 | 0.811382 | 7.198033e-51 | -8.615850e-47 |
| Msa0074750 | Msa0173070 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa0079130 | Msa0173070 | 0.811508 | 6.758629e-51 | -8.615850e-47 |
| Msa0079260 | Msa0173070 | 0.804269 | 2.342891e-49 | -8.615850e-47 |
| Msa0079920 | Msa0173070 | 0.812079 | 5.077216e-51 | -8.615850e-47 |
| Msa0089360 | Msa0173070 | 0.815092 | 1.103773e-51 | -8.615850e-47 |
| Msa0090360 | Msa0173070 | 0.804958 | 1.682438e-49 | -8.615850e-47 |
| Msa0090550 | Msa0173070 | 0.808085 | 3.682519e-50 | -8.615850e-47 |
| Msa0104800 | Msa0173070 | 0.821869 | 3.209305e-53 | -8.615850e-47 |
| Msa0114430 | Msa0173070 | 0.829409 | 5.231535e-55 | -8.615850e-47 |
| Msa0120040 | Msa0173070 | -0.800937 | 1.140316e-48 | -8.615850e-47 |
| Msa0125450 | Msa0173070 | 0.827914 | 1.202279e-54 | -8.615850e-47 |
| Msa0125540 | Msa0173070 | 0.820710 | 5.940236e-53 | -8.615850e-47 |
| Msa0140110 | Msa0173070 | 0.808670 | 2.763779e-50 | -8.615850e-47 |
| Msa0140300 | Msa0173070 | 0.802162 | 6.394382e-49 | -8.615850e-47 |
| Msa0143540 | Msa0173070 | 0.807828 | 4.176466e-50 | -8.615850e-47 |
| Msa0145010 | Msa0173070 | 0.801625 | 8.243998e-49 | -8.615850e-47 |
| Msa0151180 | Msa0173070 | 0.842419 | 2.616376e-58 | -8.615850e-47 |
| Msa0173070 | Msa0175840 | 0.808030 | 3.783532e-50 | -8.615850e-47 |
| Msa0173070 | Msa0184040 | 0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0173070 | Msa0190250 | 0.802745 | 4.848785e-49 | -8.615850e-47 |
| Msa0173070 | Msa0205510 | 0.803075 | 4.144775e-49 | -8.615850e-47 |
| Msa0173070 | Msa0206010 | 0.811779 | 5.901674e-51 | -8.615850e-47 |
| Msa0173070 | Msa0207030 | 0.808479 | 3.034678e-50 | -8.615850e-47 |
| Msa0173070 | Msa0231980 | 0.825503 | 4.524372e-54 | -8.615850e-47 |
| Msa0173070 | Msa0232050 | 0.807808 | 4.218641e-50 | -8.615850e-47 |
| Msa0173070 | Msa0253200 | 0.807216 | 5.632565e-50 | -8.615850e-47 |
| Msa0173070 | Msa0261720 | 0.810233 | 1.276458e-50 | -8.615850e-47 |
| Msa0173070 | Msa0271530 | 0.803519 | 3.353271e-49 | -8.615850e-47 |
| Msa0173070 | Msa0271890 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0173070 | Msa0276630 | 0.806806 | 6.878026e-50 | -8.615850e-47 |
| Msa0173070 | Msa0285330 | 0.815958 | 7.079369e-52 | -8.615850e-47 |
| Msa0173070 | Msa0286670 | 0.816588 | 5.118897e-52 | -8.615850e-47 |
| Msa0173070 | Msa0287410 | 0.827822 | 1.265333e-54 | -8.615850e-47 |
| Msa0173070 | Msa0292030 | 0.808937 | 2.423327e-50 | -8.615850e-47 |
| Msa0173070 | Msa0310860 | 0.804282 | 2.328419e-49 | -8.615850e-47 |
| Msa0173070 | Msa0311700 | 0.814995 | 1.159856e-51 | -8.615850e-47 |
| Msa0173070 | Msa0319170 | 0.803250 | 3.812087e-49 | -8.615850e-47 |
| Msa0173070 | Msa0321690 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0173070 | Msa0326110 | 0.822272 | 2.589017e-53 | -8.615850e-47 |
| Msa0173070 | Msa0334360 | 0.835204 | 1.922890e-56 | -8.615850e-47 |
| Msa0173070 | Msa0335060 | 0.831881 | 1.297851e-55 | -8.615850e-47 |
| Msa0173070 | Msa0346430 | 0.818326 | 2.078216e-52 | -8.615850e-47 |
| Msa0173070 | Msa0356960 | 0.807644 | 4.570464e-50 | -8.615850e-47 |
| Msa0173070 | Msa0363640 | 0.801515 | 8.684232e-49 | -8.615850e-47 |
| Msa0173070 | Msa0368320 | 0.816856 | 4.456801e-52 | -8.615850e-47 |
| Msa0173070 | Msa0376310 | 0.808675 | 2.756937e-50 | -8.615850e-47 |
| Msa0173070 | Msa0376910 | 0.800126 | 1.668232e-48 | -8.615850e-47 |
| Msa0173070 | Msa0379640 | 0.808845 | 2.535601e-50 | -8.615850e-47 |
| Msa0173070 | Msa0380300 | 0.818632 | 1.771418e-52 | -8.615850e-47 |
| Msa0173070 | Msa0388950 | 0.809804 | 1.578806e-50 | -8.615850e-47 |
| Msa0173070 | Msa0390730 | 0.808518 | 2.978375e-50 | -8.615850e-47 |
| Msa0173070 | Msa0391690 | 0.814338 | 1.620731e-51 | -8.615850e-47 |
| Msa0173070 | Msa0394260 | 0.802154 | 6.419207e-49 | -8.615850e-47 |
| Msa0173070 | Msa0415430 | 0.802209 | 6.254758e-49 | -8.615850e-47 |
| Msa0173070 | Msa0416300 | 0.802410 | 5.684737e-49 | -8.615850e-47 |
| Msa0173070 | Msa0423520 | 0.808034 | 3.776324e-50 | -8.615850e-47 |
| Msa0173070 | Msa0426900 | 0.806241 | 9.049263e-50 | -8.615850e-47 |
| Msa0173070 | Msa0443430 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0173070 | Msa0449830 | 0.807084 | 6.008814e-50 | -8.615850e-47 |
| Msa0173070 | Msa0477130 | -0.805950 | 1.041958e-49 | -8.615850e-47 |
| Msa0173070 | Msa0484840 | 0.802345 | 5.864202e-49 | -8.615850e-47 |
| Msa0173070 | Msa0489660 | 0.809899 | 1.506137e-50 | -8.615850e-47 |
| Msa0173070 | Msa0501450 | 0.811906 | 5.537080e-51 | -8.615850e-47 |
| Msa0173070 | Msa0524500 | 0.801994 | 6.922179e-49 | -8.615850e-47 |
| Msa0173070 | Msa0545070 | 0.830719 | 2.506321e-55 | -8.615850e-47 |
| Msa0173070 | Msa0566350 | 0.811899 | 5.558103e-51 | -8.615850e-47 |
| Msa0173070 | Msa0566750 | 0.812944 | 3.285100e-51 | -8.615850e-47 |
| Msa0173070 | Msa0580180 | 0.802457 | 5.560542e-49 | -8.615850e-47 |
| Msa0173070 | Msa0600450 | 0.824189 | 9.238033e-54 | -8.615850e-47 |
| Msa0173070 | Msa0640940 | 0.821132 | 4.750198e-53 | -8.615850e-47 |
| Msa0173070 | Msa0644840 | 0.804437 | 2.161412e-49 | -8.615850e-47 |
| Msa0173070 | Msa0679360 | 0.827090 | 1.895072e-54 | -8.615850e-47 |
| Msa0173070 | Msa0679710 | 0.809743 | 1.627065e-50 | -8.615850e-47 |
| Msa0173070 | Msa0682680 | 0.824293 | 8.730046e-54 | -8.615850e-47 |
| Msa0173070 | Msa0700650 | 0.800074 | 1.709280e-48 | -8.615850e-47 |
| Msa0173070 | Msa0709160 | 0.823170 | 1.600091e-53 | -8.615850e-47 |
| Msa0173070 | Msa0721280 | 0.812229 | 4.709538e-51 | -8.615850e-47 |
| Msa0173070 | Msa0748730 | 0.814774 | 1.298004e-51 | -8.615850e-47 |
| Msa0173070 | Msa0750170 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0173070 | Msa0763890 | 0.810832 | 9.473610e-51 | -8.615850e-47 |
| Msa0173070 | Msa0773590 | 0.805940 | 1.047453e-49 | -8.615850e-47 |
| Msa0173070 | Msa0773850 | 0.801597 | 8.354117e-49 | -8.615850e-47 |
| Msa0173070 | Msa0789020 | 0.807101 | 5.958643e-50 | -8.615850e-47 |
| Msa0173070 | Msa0794510 | -0.815957 | 7.083952e-52 | -8.615850e-47 |
| Msa0173070 | Msa0810220 | 0.804570 | 2.027401e-49 | -8.615850e-47 |
| Msa0173070 | Msa0820850 | 0.802464 | 5.540150e-49 | -8.615850e-47 |
| Msa0173070 | Msa0832150 | 0.809845 | 1.547210e-50 | -8.615850e-47 |
| Msa0173070 | Msa0832340 | 0.813577 | 2.386164e-51 | -8.615850e-47 |
| Msa0173070 | Msa0842770 | 0.815413 | 9.364990e-52 | -8.615850e-47 |
| Msa0173070 | Msa0849030 | 0.813738 | 2.199118e-51 | -8.615850e-47 |
| Msa0173070 | Msa0876580 | 0.802950 | 4.398363e-49 | -8.615850e-47 |
| Msa0173070 | Msa0919470 | 0.804869 | 1.756370e-49 | -8.615850e-47 |
| Msa0173070 | Msa0924310 | 0.818481 | 1.916876e-52 | -8.615850e-47 |
| Msa0173070 | Msa0932570 | 0.826569 | 2.524554e-54 | -8.615850e-47 |
| Msa0173070 | Msa0932830 | 0.803128 | 4.041717e-49 | -8.615850e-47 |
| Msa0173070 | Msa0933230 | 0.807139 | 5.847595e-50 | -8.615850e-47 |
| Msa0173070 | Msa0933310 | 0.808670 | 2.763779e-50 | -8.615850e-47 |
| Msa0173070 | Msa0936390 | 0.803113 | 4.070437e-49 | -8.615850e-47 |
| Msa0173070 | Msa0944930 | -0.805291 | 1.432892e-49 | -8.615850e-47 |
| Msa0173070 | Msa0962840 | 0.802954 | 4.390620e-49 | -8.615850e-47 |
| Msa0173070 | Msa0969520 | 0.801192 | 1.011217e-48 | -8.615850e-47 |
| Msa0173070 | Msa0970530 | 0.820758 | 5.791661e-53 | -8.615850e-47 |
| Msa0173070 | Msa0970600 | 0.819418 | 1.173776e-52 | -8.615850e-47 |
| Msa0173070 | Msa0971090 | 0.800127 | 1.667575e-48 | -8.615850e-47 |
| Msa0173070 | Msa0980880 | 0.802755 | 4.826122e-49 | -8.615850e-47 |
| Msa0173070 | Msa0983180 | -0.801505 | 8.725585e-49 | -8.615850e-47 |
| Msa0173070 | Msa0983320 | -0.839199 | 1.827277e-57 | -8.615850e-47 |
| Msa0173070 | Msa0983530 | -0.802082 | 6.642293e-49 | -8.615850e-47 |
| Msa0173070 | Msa0999100 | 0.809344 | 1.982080e-50 | -8.615850e-47 |
| Msa0173070 | Msa1002360 | 0.805524 | 1.280646e-49 | -8.615850e-47 |
| Msa0173070 | Msa1004190 | 0.813542 | 2.427750e-51 | -8.615850e-47 |
| Msa0173070 | Msa1013110 | 0.824629 | 7.278607e-54 | -8.615850e-47 |
| Msa0173070 | Msa1036300 | 0.806549 | 7.795323e-50 | -8.615850e-47 |
| Msa0173070 | Msa1043390 | 0.833287 | 5.815317e-56 | -8.615850e-47 |
| Msa0173070 | Msa1043450 | 0.825968 | 3.509854e-54 | -8.615850e-47 |
| Msa0173070 | Msa1043510 | 0.808717 | 2.699991e-50 | -8.615850e-47 |
| Msa0173070 | Msa1046280 | 0.801958 | 7.042857e-49 | -8.615850e-47 |
| Msa0173070 | Msa1081930 | 0.816041 | 6.783245e-52 | -8.615850e-47 |
| Msa0173070 | Msa1109680 | 0.821966 | 3.047925e-53 | -8.615850e-47 |
| Msa0173070 | Msa1113670 | 0.809397 | 1.930762e-50 | -8.615850e-47 |
| Msa0173070 | Msa1117240 | 0.801555 | 8.520592e-49 | -8.615850e-47 |
| Msa0173070 | Msa1135470 | 0.827891 | 1.217471e-54 | -8.615850e-47 |
| Msa0173070 | Msa1137570 | 0.817420 | 3.329350e-52 | -8.615850e-47 |
| Msa0173070 | Msa1168580 | 0.820837 | 5.554929e-53 | -8.615850e-47 |
| Msa0173070 | Msa1169550 | 0.827383 | 1.612720e-54 | -8.615850e-47 |
| Msa0173070 | Msa1174040 | 0.807201 | 5.674239e-50 | -8.615850e-47 |
| Msa0173070 | Msa1193290 | 0.807444 | 5.040875e-50 | -8.615850e-47 |
| Msa0173070 | Msa1205590 | 0.816676 | 4.891236e-52 | -8.615850e-47 |
| Msa0173070 | Msa1206100 | 0.815506 | 8.928310e-52 | -8.615850e-47 |
| Msa0173070 | Msa1215920 | 0.820185 | 7.839808e-53 | -8.615850e-47 |
| Msa0173070 | Msa1250530 | 0.844392 | 7.780429e-59 | -8.615850e-47 |
| Msa0173070 | Msa1253020 | 0.804771 | 1.841069e-49 | -8.615850e-47 |
| Msa0173070 | Msa1256470 | 0.811794 | 5.857144e-51 | -8.615850e-47 |
| Msa0173070 | Msa1276440 | 0.805492 | 1.300353e-49 | -8.615850e-47 |
| Msa0173070 | Msa1297530 | 0.800817 | 1.206312e-48 | -8.615850e-47 |
| Msa0173070 | Msa1313140 | 0.807869 | 4.094583e-50 | -8.615850e-47 |
| Msa0173070 | Msa1329550 | 0.819346 | 1.218844e-52 | -8.615850e-47 |
| Msa0173070 | Msa1336710 | 0.830067 | 3.617372e-55 | -8.615850e-47 |
| Msa0173070 | Msa1337170 | 0.806547 | 7.800177e-50 | -8.615850e-47 |
| Msa0173070 | Msa1344660 | 0.826092 | 3.279811e-54 | -8.615850e-47 |
| Msa0173070 | Msa1351550 | 0.833929 | 4.020115e-56 | -8.615850e-47 |
| Msa0173070 | Msa1353470 | 0.820920 | 5.314133e-53 | -8.615850e-47 |
| Msa0173070 | Msa1357890 | 0.811155 | 8.063026e-51 | -8.615850e-47 |
| Msa0173070 | Msa1368120 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0173070 | Msa1370340 | 0.815229 | 1.028936e-51 | -8.615850e-47 |
| Msa0173070 | Msa1371640 | 0.803285 | 3.749141e-49 | -8.615850e-47 |
| Msa0173070 | Msa1376650 | 0.813194 | 2.896383e-51 | -8.615850e-47 |
| Msa0173070 | Msa1392010 | -0.833071 | 6.581880e-56 | -8.615850e-47 |
| Msa0173070 | Msa1398090 | 0.816190 | 6.284612e-52 | -8.615850e-47 |
| Msa0173070 | Msa1404940 | 0.817510 | 3.176613e-52 | -8.615850e-47 |
| Msa0173070 | Msa1406430 | 0.804660 | 1.941782e-49 | -8.615850e-47 |
| Msa0173070 | Msa1407600 | 0.812847 | 3.449759e-51 | -8.615850e-47 |
| Msa0173070 | Msa1411020 | 0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0173070 | Msa1420490 | 0.801229 | 9.937627e-49 | -8.615850e-47 |
| Msa0173070 | Msa1421990 | 0.812468 | 4.175748e-51 | -8.615850e-47 |
| Msa0173070 | Msa1423390 | 0.802442 | 5.600561e-49 | -8.615850e-47 |
| Msa0173070 | Msa1424290 | 0.803521 | 3.350679e-49 | -8.615850e-47 |
| Msa0173070 | Msa1424450 | 0.802407 | 5.692399e-49 | -8.615850e-47 |
| Msa0173070 | Msa1428780 | 0.806309 | 8.757346e-50 | -8.615850e-47 |
| Msa0173070 | Msa1429680 | 0.802915 | 4.472184e-49 | -8.615850e-47 |
| Msa0173070 | Msa1435270 | 0.808720 | 2.696114e-50 | -8.615850e-47 |
| Msa0173070 | Msa1439320 | 0.806036 | 9.996247e-50 | -8.615850e-47 |
| Msa0173070 | Msa1458610 | 0.824331 | 8.554337e-54 | -8.615850e-47 |
| Msa0173070 | Msa1458810 | 0.809469 | 1.863071e-50 | -8.615850e-47 |
| Msa0173070 | Msa1466730 | 0.814446 | 1.534280e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173070 | MtrunA17_Chr1g0192541 | 99.658 | 292 | 1 | 0 | 1 | 292 | 242 | 533 | 0.0 | 601 |
| Msa0173070 | MtrunA17_Chr1g0192541 | 26.337 | 243 | 153 | 6 | 11 | 249 | 126 | 346 | 4.81e-17 | 81.3 |
| Msa0173070 | MtrunA17_Chr7g0271871 | 89.003 | 291 | 32 | 0 | 1 | 291 | 242 | 532 | 0.0 | 533 |
| Msa0173070 | MtrunA17_Chr7g0271871 | 29.231 | 195 | 128 | 3 | 11 | 201 | 126 | 314 | 5.00e-19 | 87.0 |
| Msa0173070 | MtrunA17_Chr2g0294881 | 85.862 | 290 | 40 | 1 | 1 | 290 | 241 | 529 | 0.0 | 518 |
| Msa0173070 | MtrunA17_Chr2g0294881 | 22.407 | 241 | 143 | 5 | 4 | 201 | 74 | 313 | 5.31e-12 | 65.9 |
| Msa0173070 | MtrunA17_Chr8g0346871 | 76.027 | 292 | 69 | 1 | 1 | 292 | 147 | 437 | 6.95e-162 | 457 |
| Msa0173070 | MtrunA17_Chr4g0074371 | 80.989 | 263 | 50 | 0 | 1 | 263 | 164 | 426 | 1.29e-159 | 451 |
| Msa0173070 | MtrunA17_Chr4g0068051 | 73.630 | 292 | 70 | 3 | 1 | 291 | 244 | 529 | 9.03e-151 | 432 |
| Msa0173070 | MtrunA17_Chr4g0068051 | 30.675 | 163 | 103 | 6 | 4 | 160 | 77 | 235 | 8.24e-12 | 65.5 |
| Msa0173070 | MtrunA17_Chr4g0075701 | 75.277 | 271 | 64 | 2 | 1 | 270 | 174 | 442 | 2.15e-143 | 412 |
| Msa0173070 | MtrunA17_Chr4g0075691 | 74.532 | 267 | 67 | 1 | 1 | 266 | 161 | 427 | 8.85e-137 | 396 |
| Msa0173070 | MtrunA17_Chr4g0075691 | 24.554 | 224 | 124 | 4 | 35 | 214 | 26 | 248 | 6.57e-14 | 71.6 |
| Msa0173070 | MtrunA17_Chr1g0174791 | 73.308 | 266 | 68 | 3 | 1 | 263 | 35 | 300 | 2.24e-130 | 372 |
| Msa0173070 | MtrunA17_Chr4g0074081 | 67.224 | 299 | 61 | 2 | 1 | 263 | 163 | 460 | 1.05e-129 | 376 |
| Msa0173070 | MtrunA17_Chr4g0004921 | 62.774 | 274 | 52 | 4 | 20 | 291 | 1 | 226 | 5.43e-111 | 320 |
| Msa0173070 | MtrunA17_Chr4g0071961 | 77.027 | 148 | 34 | 0 | 123 | 270 | 2 | 149 | 1.39e-77 | 235 |
| Msa0173070 | MtrunA17_Chr4g0075651 | 78.723 | 141 | 30 | 0 | 125 | 265 | 8 | 148 | 7.70e-76 | 228 |
| Msa0173070 | MtrunA17_Chr7g0271821 | 50.973 | 257 | 122 | 4 | 3 | 258 | 297 | 550 | 1.13e-75 | 241 |
| Msa0173070 | MtrunA17_Chr7g0271831 | 45.174 | 259 | 120 | 6 | 1 | 258 | 167 | 404 | 5.24e-58 | 191 |
| Msa0173070 | MtrunA17_Chr7g0272761 | 45.736 | 258 | 114 | 7 | 1 | 255 | 251 | 485 | 8.76e-57 | 190 |
| Msa0173070 | MtrunA17_Chr4g0075601 | 60.284 | 141 | 43 | 1 | 123 | 250 | 1 | 141 | 2.91e-53 | 171 |
| Msa0173070 | MtrunA17_Chr4g0071971 | 73.077 | 104 | 27 | 1 | 22 | 124 | 10 | 113 | 1.38e-43 | 145 |
| Msa0173070 | MtrunA17_Chr4g0075641 | 43.537 | 147 | 28 | 2 | 35 | 126 | 2 | 148 | 6.55e-26 | 100 |
| Msa0173070 | MtrunA17_Chr1g0181541 | 27.007 | 274 | 173 | 6 | 1 | 258 | 252 | 514 | 5.22e-23 | 98.6 |
| Msa0173070 | MtrunA17_Chr4g0069541 | 66.667 | 60 | 20 | 0 | 81 | 140 | 55 | 114 | 2.29e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173070 | AT3G06720.1 | 83.333 | 294 | 45 | 3 | 1 | 291 | 240 | 532 | 1.95e-177 | 500 |
| Msa0173070 | AT3G06720.1 | 28.261 | 184 | 122 | 3 | 22 | 201 | 135 | 312 | 1.83e-15 | 76.6 |
| Msa0173070 | AT3G06720.2 | 83.333 | 294 | 45 | 3 | 1 | 291 | 240 | 532 | 1.95e-177 | 500 |
| Msa0173070 | AT3G06720.2 | 28.261 | 184 | 122 | 3 | 22 | 201 | 135 | 312 | 1.83e-15 | 76.6 |
| Msa0173070 | AT4G16143.2 | 80.756 | 291 | 56 | 0 | 1 | 291 | 245 | 535 | 2.30e-168 | 478 |
| Msa0173070 | AT4G16143.2 | 27.717 | 184 | 123 | 3 | 22 | 201 | 140 | 317 | 7.67e-15 | 75.1 |
| Msa0173070 | AT4G16143.2 | 29.375 | 160 | 109 | 4 | 4 | 160 | 78 | 236 | 1.77e-13 | 70.9 |
| Msa0173070 | AT4G16143.1 | 80.756 | 291 | 56 | 0 | 1 | 291 | 245 | 535 | 2.30e-168 | 478 |
| Msa0173070 | AT4G16143.1 | 27.717 | 184 | 123 | 3 | 22 | 201 | 140 | 317 | 7.67e-15 | 75.1 |
| Msa0173070 | AT4G16143.1 | 29.375 | 160 | 109 | 4 | 4 | 160 | 78 | 236 | 1.77e-13 | 70.9 |
| Msa0173070 | AT1G09270.3 | 78.498 | 293 | 58 | 3 | 1 | 290 | 165 | 455 | 2.84e-156 | 444 |
| Msa0173070 | AT1G09270.3 | 27.778 | 162 | 110 | 5 | 12 | 167 | 6 | 166 | 5.71e-11 | 63.2 |
| Msa0173070 | AT1G09270.2 | 78.498 | 293 | 58 | 3 | 1 | 290 | 247 | 537 | 4.19e-156 | 446 |
| Msa0173070 | AT1G09270.2 | 27.059 | 170 | 117 | 5 | 4 | 167 | 80 | 248 | 1.25e-11 | 65.5 |
| Msa0173070 | AT1G09270.1 | 78.498 | 293 | 58 | 3 | 1 | 290 | 247 | 537 | 4.19e-156 | 446 |
| Msa0173070 | AT1G09270.1 | 27.059 | 170 | 117 | 5 | 4 | 167 | 80 | 248 | 1.25e-11 | 65.5 |
| Msa0173070 | AT1G02690.2 | 71.864 | 295 | 77 | 2 | 1 | 290 | 245 | 538 | 4.42e-152 | 436 |
| Msa0173070 | AT1G02690.2 | 27.094 | 203 | 136 | 4 | 5 | 201 | 121 | 317 | 8.77e-17 | 80.9 |
| Msa0173070 | AT1G02690.1 | 71.864 | 295 | 77 | 2 | 1 | 290 | 244 | 537 | 4.57e-152 | 436 |
| Msa0173070 | AT1G02690.1 | 27.228 | 202 | 136 | 4 | 5 | 201 | 121 | 316 | 1.13e-16 | 80.5 |
| Msa0173070 | AT4G02150.1 | 73.196 | 291 | 74 | 2 | 1 | 290 | 243 | 530 | 5.98e-150 | 431 |
| Msa0173070 | AT4G02150.1 | 25.200 | 250 | 160 | 7 | 5 | 249 | 120 | 347 | 5.67e-15 | 75.5 |
| Msa0173070 | AT5G49310.1 | 66.154 | 260 | 85 | 1 | 1 | 260 | 238 | 494 | 6.59e-114 | 338 |
| Msa0173070 | AT5G49310.1 | 28.500 | 200 | 138 | 5 | 4 | 201 | 114 | 310 | 4.60e-15 | 75.5 |
| Msa0173070 | AT3G05720.1 | 63.498 | 263 | 89 | 1 | 1 | 256 | 228 | 490 | 6.17e-111 | 331 |
| Msa0173070 | AT3G05720.1 | 29.730 | 185 | 118 | 5 | 22 | 201 | 123 | 300 | 1.59e-12 | 68.2 |
| Msa0173070 | AT3G05720.2 | 63.498 | 263 | 89 | 1 | 1 | 256 | 228 | 490 | 6.17e-111 | 331 |
| Msa0173070 | AT3G05720.2 | 29.730 | 185 | 118 | 5 | 22 | 201 | 123 | 300 | 1.59e-12 | 68.2 |
| Msa0173070 | AT5G52000.1 | 57.588 | 257 | 105 | 2 | 1 | 256 | 168 | 421 | 1.10e-94 | 286 |
| Msa0173070 | AT4G02150.2 | 76.647 | 167 | 39 | 0 | 1 | 167 | 243 | 409 | 8.03e-88 | 268 |
| Msa0173070 | AT4G02150.2 | 26.295 | 251 | 156 | 9 | 5 | 249 | 120 | 347 | 4.71e-15 | 75.1 |
| Msa0173070 | AT5G49305.5 | 45.420 | 262 | 95 | 3 | 6 | 265 | 168 | 383 | 8.16e-65 | 208 |
| Msa0173070 | AT5G49305.3 | 45.420 | 262 | 95 | 3 | 6 | 265 | 168 | 383 | 8.16e-65 | 208 |
| Msa0173070 | AT5G49305.4 | 45.420 | 262 | 95 | 3 | 6 | 265 | 168 | 383 | 8.16e-65 | 208 |
| Msa0173070 | AT5G49305.1 | 45.420 | 262 | 95 | 3 | 6 | 265 | 168 | 383 | 8.16e-65 | 208 |
| Msa0173070 | AT5G49305.2 | 45.420 | 262 | 95 | 3 | 6 | 265 | 168 | 383 | 8.16e-65 | 208 |
| Msa0173070 | AT1G32880.1 | 61.224 | 147 | 52 | 3 | 122 | 266 | 40 | 183 | 7.56e-57 | 181 |
| Msa0173070 | AT5G03070.1 | 25.641 | 273 | 170 | 7 | 5 | 258 | 256 | 514 | 3.71e-21 | 93.6 |
Find 110 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTTCATCGACGAAAAT+AGG | 0.156375 | 1_4:+58261665 | None:intergenic |
| GTTACGATTGTGGGTCTATT+TGG | 0.232502 | 1_4:-58261804 | Msa0173070:three_prime_UTR |
| GTGATCGAGGCCAATATATT+TGG | 0.282098 | 1_4:-58262869 | Msa0173070:CDS |
| CTTGGTTATATGTAATAGTT+TGG | 0.282901 | 1_4:-58261855 | Msa0173070:three_prime_UTR |
| CCCAGCTGTAATGTTTGATA+TGG | 0.317154 | 1_4:+58263016 | None:intergenic |
| CCTGCACTTCCTGCTCTTGC+TGG | 0.324162 | 1_4:-58264302 | Msa0173070:CDS |
| TCCTGTATGATGGGACAAGC+TGG | 0.327403 | 1_4:-58262088 | Msa0173070:three_prime_UTR |
| AAATAGGGACACTGGATATA+TGG | 0.330170 | 1_4:+58261681 | None:intergenic |
| GTCGTTTCTTTGTGTCCAAC+AGG | 0.337902 | 1_4:-58262051 | Msa0173070:three_prime_UTR |
| TGAGGTTCCTTCTGTGCCTT+CGG | 0.360279 | 1_4:-58262308 | Msa0173070:CDS |
| CCTCAGCATCATCAATCATC+TGG | 0.369585 | 1_4:+58262482 | None:intergenic |
| CCAGGCGATGCTTCTCAATC+AGG | 0.373845 | 1_4:-58262349 | Msa0173070:CDS |
| ATTGGTAAATAGAGTGTTGC+TGG | 0.374330 | 1_4:-58262021 | Msa0173070:three_prime_UTR |
| GAGGTTCCTTCTGTGCCTTC+GGG | 0.378694 | 1_4:-58262307 | Msa0173070:CDS |
| GGATTGGCTTGGGCAATACT+TGG | 0.381436 | 1_4:-58262000 | Msa0173070:three_prime_UTR |
| TAATACACCCTTGACTTACT+AGG | 0.382527 | 1_4:+58262638 | None:intergenic |
| GCATCAAGAAGGAAGCTTGC+TGG | 0.387204 | 1_4:-58263040 | Msa0173070:CDS |
| TGGGAATAAACAGCAGATTC+AGG | 0.391086 | 1_4:-58262997 | Msa0173070:intron |
| TAGGATTGTGACAGTTTGTC+TGG | 0.404102 | 1_4:-58262581 | Msa0173070:CDS |
| CACCAGAGGACCAAATATAT+TGG | 0.421774 | 1_4:+58262859 | None:intergenic |
| AACTTTATATAATACAAAAT+AGG | 0.421972 | 1_4:+58261622 | None:intergenic |
| GGCCAATATATTTGGTCCTC+TGG | 0.429004 | 1_4:-58262861 | Msa0173070:CDS |
| AACTTTCATCGACGAAAATA+GGG | 0.430049 | 1_4:+58261666 | None:intergenic |
| TGAAGATTCTTGAGACATAC+TGG | 0.434618 | 1_4:-58262399 | Msa0173070:CDS |
| ATAATGAATAACTGAACTCT+AGG | 0.436920 | 1_4:+58261709 | None:intergenic |
| CAATAGAAGCTCAACAAGTC+GGG | 0.443446 | 1_4:+58264166 | None:intergenic |
| TATCAAGAAAGAGGCTGCTT+GGG | 0.447132 | 1_4:-58262810 | Msa0173070:CDS |
| AGTAGATGTTCATGCTTCAA+TGG | 0.450475 | 1_4:-58262267 | Msa0173070:exon |
| AAGTCTTGACTGATGCCTGC+TGG | 0.451595 | 1_4:-58264256 | Msa0173070:CDS |
| GTAGATGTTCATGCTTCAAT+GGG | 0.453724 | 1_4:-58262266 | Msa0173070:exon |
| ATTCCTGCTCTTCGTACTGT+TGG | 0.456615 | 1_4:-58264009 | Msa0173070:CDS |
| CCAGCAAGAGCAGGAAGTGC+AGG | 0.456751 | 1_4:+58264302 | None:intergenic |
| AACACTCTATTTACCAATGT+TGG | 0.460273 | 1_4:+58262026 | None:intergenic |
| TAAATAGAGTGTTGCTGGAT+TGG | 0.460720 | 1_4:-58262016 | Msa0173070:three_prime_UTR |
| ATTAAAGTCCTCCTGTATGA+TGG | 0.461686 | 1_4:-58262098 | Msa0173070:three_prime_UTR |
| CCTGTATGATGGGACAAGCT+GGG | 0.468046 | 1_4:-58262087 | Msa0173070:three_prime_UTR |
| CAACACAGAGATTTATGAAA+AGG | 0.468157 | 1_4:-58262425 | Msa0173070:CDS |
| ATATCAAGAAAGAGGCTGCT+TGG | 0.477404 | 1_4:-58262811 | Msa0173070:CDS |
| CCCAGCTTGTCCCATCATAC+AGG | 0.477877 | 1_4:+58262087 | None:intergenic |
| GATTGATGATGCTGAGGGGT+TGG | 0.479588 | 1_4:-58262476 | Msa0173070:CDS |
| TTCTTATCTGTCCCGATCCT+AGG | 0.480160 | 1_4:-58262600 | Msa0173070:CDS |
| AGACAAACTGTCACAATCCT+AGG | 0.480993 | 1_4:+58262583 | None:intergenic |
| CCTGATTGAGAAGCATCGCC+TGG | 0.486344 | 1_4:+58262349 | None:intergenic |
| ATTCGCAAACGAACCAGAAA+AGG | 0.491574 | 1_4:+58262225 | None:intergenic |
| ACCATATCAAACATTACAGC+TGG | 0.491638 | 1_4:-58263017 | Msa0173070:CDS |
| GCTATCTCAAATGCTACATC+TGG | 0.492465 | 1_4:-58262788 | Msa0173070:CDS |
| TTACCAATGTTGGACCCTGT+TGG | 0.495530 | 1_4:+58262036 | None:intergenic |
| GTTCCTTCTGTGCCTTCGGG+TGG | 0.510496 | 1_4:-58262304 | Msa0173070:CDS |
| GAGTGTTGCTGGATTGGCTT+GGG | 0.515886 | 1_4:-58262010 | Msa0173070:three_prime_UTR |
| ACAATAGAAGCTCAACAAGT+CGG | 0.519609 | 1_4:+58264165 | None:intergenic |
| CTTGAAAACATCTTGAAGGT+TGG | 0.523089 | 1_4:-58262553 | Msa0173070:CDS |
| AACTGTCACAATCCTAGGAT+CGG | 0.523984 | 1_4:+58262588 | None:intergenic |
| GGAATTAGCACTGAAGGAGA+TGG | 0.524492 | 1_4:+58264027 | None:intergenic |
| AAGATATGATAGTGCCCAGC+AGG | 0.525630 | 1_4:+58264241 | None:intergenic |
| ATCTCAAATGCTACATCTGG+TGG | 0.531801 | 1_4:-58262785 | Msa0173070:CDS |
| ATTCAAGCTGTAATTGAAGC+TGG | 0.533221 | 1_4:-58264197 | Msa0173070:CDS |
| TTAAAGTCCTCCTGTATGAT+GGG | 0.534537 | 1_4:-58262097 | Msa0173070:three_prime_UTR |
| AGGCCTTGAAAACATCTTGA+AGG | 0.539236 | 1_4:-58262557 | Msa0173070:CDS |
| AGTCTTGACTGATGCCTGCT+GGG | 0.542032 | 1_4:-58264255 | Msa0173070:CDS |
| ACTGTCACAATCCTAGGATC+GGG | 0.542887 | 1_4:+58262589 | None:intergenic |
| TGAGTTTGATATCAAGAAAG+AGG | 0.543652 | 1_4:-58262819 | Msa0173070:CDS |
| GATTCTTGAGACATACTGGT+TGG | 0.544779 | 1_4:-58262395 | Msa0173070:CDS |
| TGAATAAGACCAGCAAGAGC+AGG | 0.545161 | 1_4:+58264293 | None:intergenic |
| TCTCTGTGTTGTCATGACTC+TGG | 0.550839 | 1_4:+58262437 | None:intergenic |
| TCTTGAGACATACTGGTTGG+AGG | 0.551326 | 1_4:-58262392 | Msa0173070:CDS |
| ACTGTTGGAAACATTGTCAC+TGG | 0.554408 | 1_4:-58263994 | Msa0173070:CDS |
| CATCTTGAAGGTTGGAGAAG+CGG | 0.554732 | 1_4:-58262545 | Msa0173070:CDS |
| GCAAAATGCCAGATGCTCGT+TGG | 0.556813 | 1_4:-58261782 | Msa0173070:three_prime_UTR |
| ATCTCATGGTGACAGATGTA+TGG | 0.557066 | 1_4:-58261969 | Msa0173070:three_prime_UTR |
| TTTCCAACAGTACGAAGAGC+AGG | 0.559463 | 1_4:+58264006 | None:intergenic |
| CTCAGCATCATCAATCATCT+GGG | 0.560931 | 1_4:+58262483 | None:intergenic |
| ATTGTGACAGTTTGTCTGGA+AGG | 0.563823 | 1_4:-58262577 | Msa0173070:CDS |
| GACAGGTACCTAGTAAGTCA+AGG | 0.569304 | 1_4:-58262646 | Msa0173070:intron |
| TGTCCAACAGGGTCCAACAT+TGG | 0.572509 | 1_4:-58262039 | Msa0173070:three_prime_UTR |
| TCGTTTCTTTGTGTCCAACA+GGG | 0.573793 | 1_4:-58262050 | Msa0173070:three_prime_UTR |
| AGAGCAGGAATTAGCACTGA+AGG | 0.580502 | 1_4:+58264021 | None:intergenic |
| TGGAGATGATTTGCAAACTC+AGG | 0.581537 | 1_4:-58263974 | Msa0173070:intron |
| GAATTAGCACTGAAGGAGAT+GGG | 0.587950 | 1_4:+58264028 | None:intergenic |
| CTGTATGATGGGACAAGCTG+GGG | 0.589464 | 1_4:-58262086 | Msa0173070:three_prime_UTR |
| ATCGACGAAAATAGGGACAC+TGG | 0.590862 | 1_4:+58261673 | None:intergenic |
| AGAGTGTTGCTGGATTGGCT+TGG | 0.590986 | 1_4:-58262011 | Msa0173070:three_prime_UTR |
| AATCCACCCGAAGGCACAGA+AGG | 0.592098 | 1_4:+58262301 | None:intergenic |
| GAGAAGTCTAGTATTGTCTA+CGG | 0.592208 | 1_4:+58261927 | None:intergenic |
| GCACTATCATATCTTTCTGA+TGG | 0.593235 | 1_4:-58264233 | Msa0173070:CDS |
| TAATGAATAACTGAACTCTA+GGG | 0.595201 | 1_4:+58261710 | None:intergenic |
| TCTCAATCAGGATTCAACTT+CGG | 0.600258 | 1_4:-58262337 | Msa0173070:CDS |
| GAAGACGAGACTATGCCTCC+AGG | 0.602017 | 1_4:-58262367 | Msa0173070:CDS |
| ATTATATAAAGTTTCACGCA+GGG | 0.606159 | 1_4:-58261612 | Msa0173070:three_prime_UTR |
| ATTCAACTTCGGTAGTGCTG+AGG | 0.616870 | 1_4:-58262326 | Msa0173070:CDS |
| CTGTGTTGTCATGACTCTGG+AGG | 0.617202 | 1_4:+58262440 | None:intergenic |
| TTATAAGAAAAGCATCAAGA+AGG | 0.621627 | 1_4:-58263051 | Msa0173070:CDS |
| TATTTAACAGGCTGTGATCG+AGG | 0.629779 | 1_4:-58262882 | Msa0173070:intron |
| CCATATCAAACATTACAGCT+GGG | 0.630827 | 1_4:-58263016 | Msa0173070:CDS |
| ATAGGTTATCATCAATCATG+AGG | 0.634624 | 1_4:-58263108 | Msa0173070:intron |
| TATTATATAAAGTTTCACGC+AGG | 0.637214 | 1_4:-58261613 | Msa0173070:three_prime_UTR |
| ACAGGTACCTAGTAAGTCAA+GGG | 0.638546 | 1_4:-58262645 | Msa0173070:intron |
| CCAGATGATTGATGATGCTG+AGG | 0.638583 | 1_4:-58262482 | Msa0173070:CDS |
| AGCTTGTCCCATCATACAGG+AGG | 0.659269 | 1_4:+58262090 | None:intergenic |
| CAGATGATTGATGATGCTGA+GGG | 0.661033 | 1_4:-58262481 | Msa0173070:CDS |
| GTCAACAGATTATATAGACA+AGG | 0.667483 | 1_4:+58263080 | None:intergenic |
| AATAGAAGCTCAACAAGTCG+GGG | 0.676710 | 1_4:+58264167 | None:intergenic |
| ACAGATAAGAAGATCACACA+AGG | 0.680401 | 1_4:+58262612 | None:intergenic |
| GATTGAGAAGCATCGCCTGG+AGG | 0.697893 | 1_4:+58262352 | None:intergenic |
| TCATGGTGACAGATGTATGG+TGG | 0.702524 | 1_4:-58261966 | Msa0173070:three_prime_UTR |
| TTGAAGTTAAATCCACCCGA+AGG | 0.711716 | 1_4:+58262292 | None:intergenic |
| AATGCATATGATAGAGAACA+CGG | 0.712688 | 1_4:+58261576 | None:intergenic |
| AAAAGGCTAAATATAAGACA+CGG | 0.732928 | 1_4:+58262242 | None:intergenic |
| TAGATGTTCATGCTTCAATG+GGG | 0.738164 | 1_4:-58262265 | Msa0173070:three_prime_UTR |
| AGATGATTGATGATGCTGAG+GGG | 0.754975 | 1_4:-58262480 | Msa0173070:CDS |
| CAGATAAGAAGATCACACAA+GGG | 0.772619 | 1_4:+58262613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATAAAAAAAAAAA+AGG | + | chr1_4:58261803-58261822 | None:intergenic | 0.0% |
| !! | AACTTTATATAATACAAAAT+AGG | + | chr1_4:58264271-58264290 | None:intergenic | 10.0% |
| !! | GCTTCTTAAAAAAAAAAAAA+AGG | - | chr1_4:58262347-58262366 | Msa0173070:CDS | 15.0% |
| !!! | AACAAAAAGTTTTTTTTCAA+CGG | + | chr1_4:58262462-58262481 | None:intergenic | 15.0% |
| !! | TTTATCCACAAAAAAAAGAA+AGG | + | chr1_4:58262059-58262078 | None:intergenic | 20.0% |
| !! | ATAAAAGAAATACTGTTAAC+AGG | - | chr1_4:58262074-58262093 | Msa0173070:three_prime_UTR | 20.0% |
| !! | TAAAAGAAATACTGTTAACA+GGG | - | chr1_4:58262075-58262094 | Msa0173070:three_prime_UTR | 20.0% |
| !! | AATTTCTATTGTTTGTTTGT+TGG | - | chr1_4:58262737-58262756 | Msa0173070:intron | 20.0% |
| !!! | GATGCTTTTCTTATAATTAT+TGG | + | chr1_4:58262835-58262854 | None:intergenic | 20.0% |
| !! | CTGTTAAATATTAGGAAATT+AGG | + | chr1_4:58262998-58263017 | None:intergenic | 20.0% |
| !! | CTAATTTCCTAATATTTAAC+AGG | - | chr1_4:58262996-58263015 | Msa0173070:intron | 20.0% |
| !! | GATAAAAATATAGGCAATAA+TGG | - | chr1_4:58263367-58263386 | Msa0173070:intron | 20.0% |
| ! | AAAAGAAATACTGTTAACAG+GGG | - | chr1_4:58262076-58262095 | Msa0173070:three_prime_UTR | 25.0% |
| ! | TTAAAGAAAGGTTTGACATA+TGG | + | chr1_4:58262557-58262576 | None:intergenic | 25.0% |
| ! | TGTCAAACCTTTCTTTAAAT+TGG | - | chr1_4:58262559-58262578 | Msa0173070:CDS | 25.0% |
| !!! | TTATAAGAAAAGCATCAAGA+AGG | - | chr1_4:58262839-58262858 | Msa0173070:CDS | 25.0% |
| ! | ATAATATTATTAACCCTCCA+GGG | + | chr1_4:58263175-58263194 | None:intergenic | 25.0% |
| ! | AAAAGGCTAAATATAAGACA+CGG | + | chr1_4:58263651-58263670 | None:intergenic | 25.0% |
| !! | AACTTTATCAAGAATTTTGC+AGG | - | chr1_4:58263751-58263770 | Msa0173070:intron | 25.0% |
| !!! | TCAGTATCATGATTTTTTCT+TGG | - | chr1_4:58264017-58264036 | Msa0173070:CDS | 25.0% |
| ! | CTTGGTTATATGTAATAGTT+TGG | - | chr1_4:58264035-58264054 | Msa0173070:intron | 25.0% |
| !!! | TTAAGTTTTAGTTACGATTG+TGG | - | chr1_4:58264076-58264095 | Msa0173070:intron | 25.0% |
| !!! | TAAGTTTTAGTTACGATTGT+GGG | - | chr1_4:58264077-58264096 | Msa0173070:intron | 25.0% |
| ! | AAAAATTCATAGGTACCAAT+GGG | + | chr1_4:58264142-58264161 | None:intergenic | 25.0% |
| ! | AAAAAATTCATAGGTACCAA+TGG | + | chr1_4:58264143-58264162 | None:intergenic | 25.0% |
| !!! | TTGGTACCTATGAATTTTTT+TGG | - | chr1_4:58264143-58264162 | Msa0173070:intron | 25.0% |
| ! | TAATGAATAACTGAACTCTA+GGG | + | chr1_4:58264183-58264202 | None:intergenic | 25.0% |
| ! | ATAATGAATAACTGAACTCT+AGG | + | chr1_4:58264184-58264203 | None:intergenic | 25.0% |
| ! | TATTATATAAAGTTTCACGC+AGG | - | chr1_4:58264277-58264296 | Msa0173070:CDS | 25.0% |
| ! | ATTATATAAAGTTTCACGCA+GGG | - | chr1_4:58264278-58264297 | Msa0173070:CDS | 25.0% |
| TTCGTAACAAATAAAACCAC+AGG | + | chr1_4:58262021-58262040 | None:intergenic | 30.0% | |
| CACAAAAAAAAGAAAGGCAA+AGG | + | chr1_4:58262053-58262072 | None:intergenic | 30.0% | |
| !!! | CTTTGCCTTTCTTTTTTTTG+TGG | - | chr1_4:58262051-58262070 | Msa0173070:three_prime_UTR | 30.0% |
| GCACATTAACTACTAACATA+AGG | - | chr1_4:58262209-58262228 | Msa0173070:intron | 30.0% | |
| AAAAAAAGGCTTAGAGTGAT+AGG | - | chr1_4:58262361-58262380 | Msa0173070:CDS | 30.0% | |
| AAAAAAGGCTTAGAGTGATA+GGG | - | chr1_4:58262362-58262381 | Msa0173070:CDS | 30.0% | |
| TCAAGCAATGACATTGAAAT+AGG | + | chr1_4:58262497-58262516 | None:intergenic | 30.0% | |
| CAATAATGCAAAGAAAGGTT+TGG | + | chr1_4:58262528-58262547 | None:intergenic | 30.0% | |
| TCAAGCAATAATGCAAAGAA+AGG | + | chr1_4:58262533-58262552 | None:intergenic | 30.0% | |
| CCTCAATCCAATTTAAAGAA+AGG | + | chr1_4:58262569-58262588 | None:intergenic | 30.0% | |
| CCTTTCTTTAAATTGGATTG+AGG | - | chr1_4:58262566-58262585 | Msa0173070:CDS | 30.0% | |
| !!! | TATTCAAATACCGATTTTCC+TGG | - | chr1_4:58262590-58262609 | Msa0173070:CDS | 30.0% |
| CAAAAAATATTCAGAAGAGC+TGG | + | chr1_4:58262628-58262647 | None:intergenic | 30.0% | |
| !!! | CAGCTCTTCTGAATATTTTT+TGG | - | chr1_4:58262626-58262645 | Msa0173070:CDS | 30.0% |
| ! | ATGATTGATGATAACCTATG+GGG | + | chr1_4:58262781-58262800 | None:intergenic | 30.0% |
| ! | CATGATTGATGATAACCTAT+GGG | + | chr1_4:58262782-58262801 | None:intergenic | 30.0% |
| ! | TCATGATTGATGATAACCTA+TGG | + | chr1_4:58262783-58262802 | None:intergenic | 30.0% |
| ATAGGTTATCATCAATCATG+AGG | - | chr1_4:58262782-58262801 | Msa0173070:CDS | 30.0% | |
| GTCAACAGATTATATAGACA+AGG | + | chr1_4:58262813-58262832 | None:intergenic | 30.0% | |
| ATCACAGCCTGTTAAATATT+AGG | + | chr1_4:58263006-58263025 | None:intergenic | 30.0% | |
| TGAGTTTGATATCAAGAAAG+AGG | - | chr1_4:58263071-58263090 | Msa0173070:CDS | 30.0% | |
| ! | ATGCATTTTCAATATTTCCC+TGG | - | chr1_4:58263155-58263174 | Msa0173070:intron | 30.0% |
| ! | ATTTTCAATATTTCCCTGGA+GGG | - | chr1_4:58263159-58263178 | Msa0173070:intron | 30.0% |
| CATAATATTATTAACCCTCC+AGG | + | chr1_4:58263176-58263195 | None:intergenic | 30.0% | |
| CTGGAGGGTTAATAATATTA+TGG | - | chr1_4:58263174-58263193 | Msa0173070:intron | 30.0% | |
| AATTATTCTCCATGTTTGAC+AGG | - | chr1_4:58263227-58263246 | Msa0173070:intron | 30.0% | |
| CAACACAGAGATTTATGAAA+AGG | - | chr1_4:58263465-58263484 | Msa0173070:intron | 30.0% | |
| !! | GTCTTATATTTAGCCTTTTC+TGG | - | chr1_4:58263652-58263671 | Msa0173070:intron | 30.0% |
| AACACTCTATTTACCAATGT+TGG | + | chr1_4:58263867-58263886 | None:intergenic | 30.0% | |
| !! | ACTTGGTTTTTCATATCTCA+TGG | - | chr1_4:58263907-58263926 | Msa0173070:intron | 30.0% |
| CATCGACCAAAAAAATTCAT+AGG | + | chr1_4:58264152-58264171 | None:intergenic | 30.0% | |
| AACTTTCATCGACGAAAATA+GGG | + | chr1_4:58264227-58264246 | None:intergenic | 30.0% | |
| AAACTTTCATCGACGAAAAT+AGG | + | chr1_4:58264228-58264247 | None:intergenic | 30.0% | |
| GCACTATCATATCTTTCTGA+TGG | - | chr1_4:58261657-58261676 | Msa0173070:three_prime_UTR | 35.0% | |
| ATTCAAGCTGTAATTGAAGC+TGG | - | chr1_4:58261693-58261712 | Msa0173070:three_prime_UTR | 35.0% | |
| ACAATAGAAGCTCAACAAGT+CGG | + | chr1_4:58261728-58261747 | None:intergenic | 35.0% | |
| AGTACCTCACATCTCAAATT+TGG | - | chr1_4:58261749-58261768 | Msa0173070:three_prime_UTR | 35.0% | |
| TGAATGTTCTACTCTTGTTC+AGG | - | chr1_4:58261837-58261856 | Msa0173070:three_prime_UTR | 35.0% | |
| TACTGTTAACAGGGGTTATA+AGG | - | chr1_4:58262084-58262103 | Msa0173070:three_prime_UTR | 35.0% | |
| !! | TAAGGTGTATGAGTTGGTTT+AGG | - | chr1_4:58262102-58262121 | Msa0173070:three_prime_UTR | 35.0% |
| !! | AAGGTGTATGAGTTGGTTTA+GGG | - | chr1_4:58262103-58262122 | Msa0173070:three_prime_UTR | 35.0% |
| ! | GTTGAGTGTGATTTGTAAGT+GGG | + | chr1_4:58262176-58262195 | None:intergenic | 35.0% |
| AGTTAATGTGCTCTGTTAGT+GGG | + | chr1_4:58262200-58262219 | None:intergenic | 35.0% | |
| TAGTTAATGTGCTCTGTTAG+TGG | + | chr1_4:58262201-58262220 | None:intergenic | 35.0% | |
| ! | TTTTCAACGGCAAATGTTAG+TGG | + | chr1_4:58262449-58262468 | None:intergenic | 35.0% |
| ATCTCACAATCCAGGAAAAT+CGG | + | chr1_4:58262603-58262622 | None:intergenic | 35.0% | |
| !! | ATCTCAGTAGAAACTTGTTG+AGG | + | chr1_4:58262662-58262681 | None:intergenic | 35.0% |
| !! | TTTGTTTGTTGGTTTGAACC+TGG | - | chr1_4:58262748-58262767 | Msa0173070:intron | 35.0% |
| ACCATATCAAACATTACAGC+TGG | - | chr1_4:58262873-58262892 | Msa0173070:CDS | 35.0% | |
| CCATATCAAACATTACAGCT+GGG | - | chr1_4:58262874-58262893 | Msa0173070:CDS | 35.0% | |
| ! | CATTTTCAATATTTCCCTGG+AGG | - | chr1_4:58263158-58263177 | Msa0173070:intron | 35.0% |
| TAATACACCCTTGACTTACT+AGG | + | chr1_4:58263255-58263274 | None:intergenic | 35.0% | |
| CAGATAAGAAGATCACACAA+GGG | + | chr1_4:58263280-58263299 | None:intergenic | 35.0% | |
| ACAGATAAGAAGATCACACA+AGG | + | chr1_4:58263281-58263300 | None:intergenic | 35.0% | |
| ! | CAACCTTCAAGATGTTTTCA+AGG | + | chr1_4:58263339-58263358 | None:intergenic | 35.0% |
| CTTGAAAACATCTTGAAGGT+TGG | - | chr1_4:58263337-58263356 | Msa0173070:intron | 35.0% | |
| GGAGAAGCGGATAAAAATAT+AGG | - | chr1_4:58263358-58263377 | Msa0173070:intron | 35.0% | |
| TGAAGATTCTTGAGACATAC+TGG | - | chr1_4:58263491-58263510 | Msa0173070:intron | 35.0% | |
| TCTCAATCAGGATTCAACTT+CGG | - | chr1_4:58263553-58263572 | Msa0173070:intron | 35.0% | |
| AGTAGATGTTCATGCTTCAA+TGG | - | chr1_4:58263623-58263642 | Msa0173070:intron | 35.0% | |
| GTAGATGTTCATGCTTCAAT+GGG | - | chr1_4:58263624-58263643 | Msa0173070:intron | 35.0% | |
| TAGATGTTCATGCTTCAATG+GGG | - | chr1_4:58263625-58263644 | Msa0173070:intron | 35.0% | |
| !! | AATTTTGCAGGAGTTTTGTC+TGG | - | chr1_4:58263763-58263782 | Msa0173070:intron | 35.0% |
| ATTAAAGTCCTCCTGTATGA+TGG | - | chr1_4:58263792-58263811 | Msa0173070:intron | 35.0% | |
| TTAAAGTCCTCCTGTATGAT+GGG | - | chr1_4:58263793-58263812 | Msa0173070:intron | 35.0% | |
| !! | ATTGGTAAATAGAGTGTTGC+TGG | - | chr1_4:58263869-58263888 | Msa0173070:intron | 35.0% |
| !! | TAAATAGAGTGTTGCTGGAT+TGG | - | chr1_4:58263874-58263893 | Msa0173070:intron | 35.0% |
| !!! | TGTATGGTGGCTTGATTTTT+TGG | - | chr1_4:58263937-58263956 | Msa0173070:intron | 35.0% |
| GAGAAGTCTAGTATTGTCTA+CGG | + | chr1_4:58263966-58263985 | None:intergenic | 35.0% | |
| AAATAGGGACACTGGATATA+TGG | + | chr1_4:58264212-58264231 | None:intergenic | 35.0% | |
| AATAGAAGCTCAACAAGTCG+GGG | + | chr1_4:58261726-58261745 | None:intergenic | 40.0% | |
| CAATAGAAGCTCAACAAGTC+GGG | + | chr1_4:58261727-58261746 | None:intergenic | 40.0% | |
| ! | ACAGCCAAATTTGAGATGTG+AGG | + | chr1_4:58261756-58261775 | None:intergenic | 40.0% |
| ! | GAATTAGCACTGAAGGAGAT+GGG | + | chr1_4:58261865-58261884 | None:intergenic | 40.0% |
| ACTGTTGGAAACATTGTCAC+TGG | - | chr1_4:58261896-58261915 | Msa0173070:three_prime_UTR | 40.0% | |
| ! | TGGAGATGATTTGCAAACTC+AGG | - | chr1_4:58261916-58261935 | Msa0173070:three_prime_UTR | 40.0% |
| ACAACAACATGAGATACTCC+TGG | + | chr1_4:58261951-58261970 | None:intergenic | 40.0% | |
| GGAAAATCACTGAGATCGAA+AGG | + | chr1_4:58262000-58262019 | None:intergenic | 40.0% | |
| GGGTTATAAGGTGTATGAGT+TGG | - | chr1_4:58262096-58262115 | Msa0173070:three_prime_UTR | 40.0% | |
| !! | AGGTGTATGAGTTGGTTTAG+GGG | - | chr1_4:58262104-58262123 | Msa0173070:three_prime_UTR | 40.0% |
| GAGAAACATAAGGCTTAGAG+TGG | - | chr1_4:58262128-58262147 | Msa0173070:intron | 40.0% | |
| ACATAAGGCTTAGAGTGGTA+TGG | - | chr1_4:58262133-58262152 | Msa0173070:intron | 40.0% | |
| TTAGAGTGGTATGGAGGTAA+TGG | - | chr1_4:58262142-58262161 | Msa0173070:intron | 40.0% | |
| TAGAGTGGTATGGAGGTAAT+GGG | - | chr1_4:58262143-58262162 | Msa0173070:intron | 40.0% | |
| ! | GGTTGAGTGTGATTTGTAAG+TGG | + | chr1_4:58262177-58262196 | None:intergenic | 40.0% |
| TTAATGTGCTCTGTTAGTGG+GGG | + | chr1_4:58262198-58262217 | None:intergenic | 40.0% | |
| GTTAATGTGCTCTGTTAGTG+GGG | + | chr1_4:58262199-58262218 | None:intergenic | 40.0% | |
| GAATCGAACTTGAAACCTTG+AGG | + | chr1_4:58262297-58262316 | None:intergenic | 40.0% | |
| CCCAGCTGTAATGTTTGATA+TGG | + | chr1_4:58262877-58262896 | None:intergenic | 40.0% | |
| TGGGAATAAACAGCAGATTC+AGG | - | chr1_4:58262893-58262912 | Msa0173070:intron | 40.0% | |
| TATTTAACAGGCTGTGATCG+AGG | - | chr1_4:58263008-58263027 | Msa0173070:CDS | 40.0% | |
| GTGATCGAGGCCAATATATT+TGG | - | chr1_4:58263021-58263040 | Msa0173070:CDS | 40.0% | |
| CACCAGAGGACCAAATATAT+TGG | + | chr1_4:58263034-58263053 | None:intergenic | 40.0% | |
| ATATCAAGAAAGAGGCTGCT+TGG | - | chr1_4:58263079-58263098 | Msa0173070:CDS | 40.0% | |
| TATCAAGAAAGAGGCTGCTT+GGG | - | chr1_4:58263080-58263099 | Msa0173070:CDS | 40.0% | |
| GCTATCTCAAATGCTACATC+TGG | - | chr1_4:58263102-58263121 | Msa0173070:CDS | 40.0% | |
| ATCTCAAATGCTACATCTGG+TGG | - | chr1_4:58263105-58263124 | Msa0173070:CDS | 40.0% | |
| TACTAGGTACCTGTCAAACA+TGG | + | chr1_4:58263239-58263258 | None:intergenic | 40.0% | |
| ACAGGTACCTAGTAAGTCAA+GGG | - | chr1_4:58263245-58263264 | Msa0173070:intron | 40.0% | |
| AACTGTCACAATCCTAGGAT+CGG | + | chr1_4:58263305-58263324 | None:intergenic | 40.0% | |
| AGACAAACTGTCACAATCCT+AGG | + | chr1_4:58263310-58263329 | None:intergenic | 40.0% | |
| TAGGATTGTGACAGTTTGTC+TGG | - | chr1_4:58263309-58263328 | Msa0173070:intron | 40.0% | |
| ATTGTGACAGTTTGTCTGGA+AGG | - | chr1_4:58263313-58263332 | Msa0173070:intron | 40.0% | |
| AGGCCTTGAAAACATCTTGA+AGG | - | chr1_4:58263333-58263352 | Msa0173070:intron | 40.0% | |
| CTCAGCATCATCAATCATCT+GGG | + | chr1_4:58263410-58263429 | None:intergenic | 40.0% | |
| !! | CAGATGATTGATGATGCTGA+GGG | - | chr1_4:58263409-58263428 | Msa0173070:intron | 40.0% |
| !! | AGATGATTGATGATGCTGAG+GGG | - | chr1_4:58263410-58263429 | Msa0173070:intron | 40.0% |
| GATTCTTGAGACATACTGGT+TGG | - | chr1_4:58263495-58263514 | Msa0173070:intron | 40.0% | |
| TTGAAGTTAAATCCACCCGA+AGG | + | chr1_4:58263601-58263620 | None:intergenic | 40.0% | |
| ATTCGCAAACGAACCAGAAA+AGG | + | chr1_4:58263668-58263687 | None:intergenic | 40.0% | |
| ! | TTCGTTTGCGAATTTCTGGA+TGG | - | chr1_4:58263675-58263694 | Msa0173070:intron | 40.0% |
| TCGTTTCTTTGTGTCCAACA+GGG | - | chr1_4:58263840-58263859 | Msa0173070:intron | 40.0% | |
| ATCTCATGGTGACAGATGTA+TGG | - | chr1_4:58263921-58263940 | Msa0173070:intron | 40.0% | |
| GTTACGATTGTGGGTCTATT+TGG | - | chr1_4:58264086-58264105 | Msa0173070:intron | 40.0% | |
| TAAAAACTCCAACGAGCATC+TGG | + | chr1_4:58264119-58264138 | None:intergenic | 40.0% | |
| ! | TCGTTGGAGTTTTTACCCAT+TGG | - | chr1_4:58264124-58264143 | Msa0173070:intron | 40.0% |
| TGAATAAGACCAGCAAGAGC+AGG | + | chr1_4:58261600-58261619 | None:intergenic | 45.0% | |
| ! | AAGATATGATAGTGCCCAGC+AGG | + | chr1_4:58261652-58261671 | None:intergenic | 45.0% |
| ! | GGAATTAGCACTGAAGGAGA+TGG | + | chr1_4:58261866-58261885 | None:intergenic | 45.0% |
| ! | AGAGCAGGAATTAGCACTGA+AGG | + | chr1_4:58261872-58261891 | None:intergenic | 45.0% |
| ATTCCTGCTCTTCGTACTGT+TGG | - | chr1_4:58261881-58261900 | Msa0173070:three_prime_UTR | 45.0% | |
| TTTCCAACAGTACGAAGAGC+AGG | + | chr1_4:58261887-58261906 | None:intergenic | 45.0% | |
| !! | AAACTCAGGTATTGACCACC+AGG | - | chr1_4:58261930-58261949 | Msa0173070:three_prime_UTR | 45.0% |
| ACAACATGAGATACTCCTGG+TGG | + | chr1_4:58261948-58261967 | None:intergenic | 45.0% | |
| ! | CGATCTCAGTGATTTTCCTG+TGG | - | chr1_4:58262002-58262021 | Msa0173070:three_prime_UTR | 45.0% |
| !! | GGTGTATGAGTTGGTTTAGG+GGG | - | chr1_4:58262105-58262124 | Msa0173070:three_prime_UTR | 45.0% |
| !! | GTGTATGAGTTGGTTTAGGG+GGG | - | chr1_4:58262106-58262125 | Msa0173070:three_prime_UTR | 45.0% |
| GTTTAGGGGGGAGAAACATA+AGG | - | chr1_4:58262118-58262137 | Msa0173070:three_prime_UTR | 45.0% | |
| TAAGGCTTAGAGTGGTATGG+AGG | - | chr1_4:58262136-58262155 | Msa0173070:intron | 45.0% | |
| AAGGCTTAGAGTAACCCTCT+TGG | - | chr1_4:58262228-58262247 | Msa0173070:intron | 45.0% | |
| AGGCTTAGAGTAACCCTCTT+GGG | - | chr1_4:58262229-58262248 | Msa0173070:intron | 45.0% | |
| TTAGAGTAACCCTCTTGGGT+TGG | - | chr1_4:58262233-58262252 | Msa0173070:intron | 45.0% | |
| !! | ATGGTATTGGCTTGGGATCT+GGG | - | chr1_4:58262260-58262279 | Msa0173070:three_prime_UTR | 45.0% |
| TCGAACTTGAAACCTTGAGG+AGG | + | chr1_4:58262294-58262313 | None:intergenic | 45.0% | |
| CTAACTTAGCCCACCCAAAT+TGG | + | chr1_4:58262328-58262347 | None:intergenic | 45.0% | |
| AAAGGCTTAGAGTGATAGGG+AGG | - | chr1_4:58262365-58262384 | Msa0173070:CDS | 45.0% | |
| TTAGAGTGATAGGGAGGTCA+TGG | - | chr1_4:58262371-58262390 | Msa0173070:CDS | 45.0% | |
| GTTAGTGTGCTCTGTTAGTG+GGG | + | chr1_4:58262427-58262446 | None:intergenic | 45.0% | |
| GGTTAGTGTGCTCTGTTAGT+GGG | + | chr1_4:58262428-58262447 | None:intergenic | 45.0% | |
| TGGTTAGTGTGCTCTGTTAG+TGG | + | chr1_4:58262429-58262448 | None:intergenic | 45.0% | |
| TGATGATAACCTATGGGGCA+AGG | + | chr1_4:58262776-58262795 | None:intergenic | 45.0% | |
| GGCCAATATATTTGGTCCTC+TGG | - | chr1_4:58263029-58263048 | Msa0173070:CDS | 45.0% | |
| !!! | TTTTGAAGCAGACTCACCAG+AGG | + | chr1_4:58263048-58263067 | None:intergenic | 45.0% |
| GACAGGTACCTAGTAAGTCA+AGG | - | chr1_4:58263244-58263263 | Msa0173070:intron | 45.0% | |
| TTCTTATCTGTCCCGATCCT+AGG | - | chr1_4:58263290-58263309 | Msa0173070:intron | 45.0% | |
| ACTGTCACAATCCTAGGATC+GGG | + | chr1_4:58263304-58263323 | None:intergenic | 45.0% | |
| CATCTTGAAGGTTGGAGAAG+CGG | - | chr1_4:58263345-58263364 | Msa0173070:intron | 45.0% | |
| CCTCAGCATCATCAATCATC+TGG | + | chr1_4:58263411-58263430 | None:intergenic | 45.0% | |
| !! | CCAGATGATTGATGATGCTG+AGG | - | chr1_4:58263408-58263427 | Msa0173070:intron | 45.0% |
| TCTCTGTGTTGTCATGACTC+TGG | + | chr1_4:58263456-58263475 | None:intergenic | 45.0% | |
| ! | TCTTGAGACATACTGGTTGG+AGG | - | chr1_4:58263498-58263517 | Msa0173070:intron | 45.0% |
| ATTCAACTTCGGTAGTGCTG+AGG | - | chr1_4:58263564-58263583 | Msa0173070:intron | 45.0% | |
| ! | CTGGTTCGTTTGCGAATTTC+TGG | - | chr1_4:58263671-58263690 | Msa0173070:intron | 45.0% |
| GTCGTTTCTTTGTGTCCAAC+AGG | - | chr1_4:58263839-58263858 | Msa0173070:intron | 45.0% | |
| TTACCAATGTTGGACCCTGT+TGG | + | chr1_4:58263857-58263876 | None:intergenic | 45.0% | |
| TCATGGTGACAGATGTATGG+TGG | - | chr1_4:58263924-58263943 | Msa0173070:intron | 45.0% | |
| ATCGACGAAAATAGGGACAC+TGG | + | chr1_4:58264220-58264239 | None:intergenic | 45.0% | |
| AAGTCTTGACTGATGCCTGC+TGG | - | chr1_4:58261634-58261653 | Msa0173070:three_prime_UTR | 50.0% | |
| AGTCTTGACTGATGCCTGCT+GGG | - | chr1_4:58261635-58261654 | Msa0173070:three_prime_UTR | 50.0% | |
| !! | TTGGGTTGGCCTGATGGTAT+TGG | - | chr1_4:58262247-58262266 | Msa0173070:three_prime_UTR | 50.0% |
| !! | TTGGCCTGATGGTATTGGCT+TGG | - | chr1_4:58262252-58262271 | Msa0173070:three_prime_UTR | 50.0% |
| !! | TGGCCTGATGGTATTGGCTT+GGG | - | chr1_4:58262253-58262272 | Msa0173070:three_prime_UTR | 50.0% |
| GATCCCAAGCCAATACCATC+AGG | + | chr1_4:58262259-58262278 | None:intergenic | 50.0% | |
| !! | GATGGTATTGGCTTGGGATC+TGG | - | chr1_4:58262259-58262278 | Msa0173070:three_prime_UTR | 50.0% |
| !! | TGGTATTGGCTTGGGATCTG+GGG | - | chr1_4:58262261-58262280 | Msa0173070:three_prime_UTR | 50.0% |
| GATTCCCCCAGTGCCAATTT+GGG | - | chr1_4:58262312-58262331 | Msa0173070:CDS | 50.0% | |
| AGCTGGTCATCTCACAATCC+AGG | + | chr1_4:58262611-58262630 | None:intergenic | 50.0% | |
| GCATCAAGAAGGAAGCTTGC+TGG | - | chr1_4:58262850-58262869 | Msa0173070:CDS | 50.0% | |
| !! | GATTGATGATGCTGAGGGGT+TGG | - | chr1_4:58263414-58263433 | Msa0173070:intron | 50.0% |
| CTGTGTTGTCATGACTCTGG+AGG | + | chr1_4:58263453-58263472 | None:intergenic | 50.0% | |
| TGAGGTTCCTTCTGTGCCTT+CGG | - | chr1_4:58263582-58263601 | Msa0173070:intron | 50.0% | |
| AGCTTGTCCCATCATACAGG+AGG | + | chr1_4:58263803-58263822 | None:intergenic | 50.0% | |
| ! | TCCTGTATGATGGGACAAGC+TGG | - | chr1_4:58263802-58263821 | Msa0173070:intron | 50.0% |
| ! | CCTGTATGATGGGACAAGCT+GGG | - | chr1_4:58263803-58263822 | Msa0173070:intron | 50.0% |
| ! | CTGTATGATGGGACAAGCTG+GGG | - | chr1_4:58263804-58263823 | Msa0173070:intron | 50.0% |
| TGTCCAACAGGGTCCAACAT+TGG | - | chr1_4:58263851-58263870 | Msa0173070:intron | 50.0% | |
| !! | AGAGTGTTGCTGGATTGGCT+TGG | - | chr1_4:58263879-58263898 | Msa0173070:intron | 50.0% |
| !! | GAGTGTTGCTGGATTGGCTT+GGG | - | chr1_4:58263880-58263899 | Msa0173070:intron | 50.0% |
| !! | GGATTGGCTTGGGCAATACT+TGG | - | chr1_4:58263890-58263909 | Msa0173070:intron | 50.0% |
| GCAAAATGCCAGATGCTCGT+TGG | - | chr1_4:58264108-58264127 | Msa0173070:intron | 50.0% | |
| ACCATCAGGCCAACCCAAGA+GGG | + | chr1_4:58262245-58262264 | None:intergenic | 55.0% | |
| TACCATCAGGCCAACCCAAG+AGG | + | chr1_4:58262246-58262265 | None:intergenic | 55.0% | |
| !! | GGTATTGGCTTGGGATCTGG+GGG | - | chr1_4:58262262-58262281 | Msa0173070:three_prime_UTR | 55.0% |
| CGATTCCCCCAGTGCCAATT+TGG | - | chr1_4:58262311-58262330 | Msa0173070:CDS | 55.0% | |
| AGCCCACCCAAATTGGCACT+GGG | + | chr1_4:58262321-58262340 | None:intergenic | 55.0% | |
| TAGCCCACCCAAATTGGCAC+TGG | + | chr1_4:58262322-58262341 | None:intergenic | 55.0% | |
| GAAGACGAGACTATGCCTCC+AGG | - | chr1_4:58263523-58263542 | Msa0173070:intron | 55.0% | |
| !! | GATTGAGAAGCATCGCCTGG+AGG | + | chr1_4:58263541-58263560 | None:intergenic | 55.0% |
| !! | CCTGATTGAGAAGCATCGCC+TGG | + | chr1_4:58263544-58263563 | None:intergenic | 55.0% |
| CCAGGCGATGCTTCTCAATC+AGG | - | chr1_4:58263541-58263560 | Msa0173070:intron | 55.0% | |
| GAGGTTCCTTCTGTGCCTTC+GGG | - | chr1_4:58263583-58263602 | Msa0173070:intron | 55.0% | |
| ! | AATCCACCCGAAGGCACAGA+AGG | + | chr1_4:58263592-58263611 | None:intergenic | 55.0% |
| CCCAGCTTGTCCCATCATAC+AGG | + | chr1_4:58263806-58263825 | None:intergenic | 55.0% | |
| ! | CCAGCAAGAGCAGGAAGTGC+AGG | + | chr1_4:58261591-58261610 | None:intergenic | 60.0% |
| CCTGCACTTCCTGCTCTTGC+TGG | - | chr1_4:58261588-58261607 | Msa0173070:three_prime_UTR | 60.0% | |
| !! | ACCCTCTTGGGTTGGCCTGA+TGG | - | chr1_4:58262241-58262260 | Msa0173070:three_prime_UTR | 60.0% |
| ! | TGGGGGTATGCTCCTCCTCA+AGG | - | chr1_4:58262279-58262298 | Msa0173070:exon | 60.0% |
| TCCCCCAGTGCCAATTTGGG+TGG | - | chr1_4:58262315-58262334 | Msa0173070:CDS | 60.0% | |
| ! | CCCACCCAAATTGGCACTGG+GGG | + | chr1_4:58262319-58262338 | None:intergenic | 60.0% |
| CCCCCAGTGCCAATTTGGGT+GGG | - | chr1_4:58262316-58262335 | Msa0173070:CDS | 60.0% | |
| GCCCACCCAAATTGGCACTG+GGG | + | chr1_4:58262320-58262339 | None:intergenic | 60.0% | |
| AACCTGGTGCCTTGCCCCAT+AGG | - | chr1_4:58262764-58262783 | Msa0173070:intron | 60.0% | |
| ! | AACCTATGGGGCAAGGCACC+AGG | + | chr1_4:58262769-58262788 | None:intergenic | 60.0% |
| GTTCCTTCTGTGCCTTCGGG+TGG | - | chr1_4:58263586-58263605 | Msa0173070:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58261582 | 58264330 | 58261582 | ID=Msa0173070;Name=Msa0173070 |
| chr1_4 | mRNA | 58261582 | 58264330 | 58261582 | ID=Msa0173070-mRNA-1;Parent=Msa0173070;Name=Msa0173070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.6|0.5|1|0.8|0.66|6|604|292 |
| chr1_4 | exon | 58261582 | 58262139 | 58261582 | ID=Msa0173070-mRNA-1:exon:17974;Parent=Msa0173070-mRNA-1 |
| chr1_4 | exon | 58262239 | 58262663 | 58262239 | ID=Msa0173070-mRNA-1:exon:17973;Parent=Msa0173070-mRNA-1 |
| chr1_4 | exon | 58262767 | 58262894 | 58262767 | ID=Msa0173070-mRNA-1:exon:17972;Parent=Msa0173070-mRNA-1 |
| chr1_4 | exon | 58262998 | 58263126 | 58262998 | ID=Msa0173070-mRNA-1:exon:17971;Parent=Msa0173070-mRNA-1 |
| chr1_4 | exon | 58263975 | 58264053 | 58263975 | ID=Msa0173070-mRNA-1:exon:17970;Parent=Msa0173070-mRNA-1 |
| chr1_4 | exon | 58264167 | 58264330 | 58264167 | ID=Msa0173070-mRNA-1:exon:17969;Parent=Msa0173070-mRNA-1 |
| chr1_4 | CDS | 58264167 | 58264330 | 58264167 | ID=Msa0173070-mRNA-1:cds;Parent=Msa0173070-mRNA-1 |
| chr1_4 | CDS | 58263975 | 58264053 | 58263975 | ID=Msa0173070-mRNA-1:cds;Parent=Msa0173070-mRNA-1 |
| chr1_4 | CDS | 58262998 | 58263126 | 58262998 | ID=Msa0173070-mRNA-1:cds;Parent=Msa0173070-mRNA-1 |
| chr1_4 | CDS | 58262767 | 58262894 | 58262767 | ID=Msa0173070-mRNA-1:cds;Parent=Msa0173070-mRNA-1 |
| chr1_4 | CDS | 58262285 | 58262663 | 58262285 | ID=Msa0173070-mRNA-1:cds;Parent=Msa0173070-mRNA-1 |
| chr1_4 | three_prime_UTR | 58262239 | 58262284 | 58262239 | ID=Msa0173070-mRNA-1:three_prime_utr;Parent=Msa0173070-mRNA-1 |
| chr1_4 | three_prime_UTR | 58261582 | 58262139 | 58261582 | ID=Msa0173070-mRNA-1:three_prime_utr;Parent=Msa0173070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
