AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0764570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764570 MtrunA17_Chr5g0414961 91.051 514 28 4 1 501 112 620 0.0 894
Msa0764570 MtrunA17_Chr3g0123121 29.132 357 181 14 10 318 31 363 4.14e-21 97.1
Msa0764570 MtrunA17_Chr6g0458401 67.857 56 18 0 7 62 27 82 4.39e-19 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764570 AT1G70100.4 37.376 503 217 21 6 459 20 473 4.24e-59 202
Msa0764570 AT1G70100.3 37.575 503 216 21 6 459 20 473 4.61e-59 203
Msa0764570 AT1G70100.6 37.575 503 216 21 6 459 20 473 4.61e-59 203
Msa0764570 AT1G70100.5 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0764570 AT1G70100.1 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0764570 AT1G70100.2 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0764570 AT1G24160.1 46.047 215 75 10 6 211 30 212 1.83e-37 145
Msa0764570 AT1G24160.2 46.047 215 75 10 6 211 30 212 1.83e-37 145
Msa0764570 AT3G26050.1 52.564 78 37 0 8 85 28 105 1.42e-19 92.0
Msa0764570 AT3G27350.1 64.516 62 21 1 10 70 30 91 2.26e-18 85.5
Msa0764570 AT3G27350.2 64.516 62 21 1 10 70 30 91 7.78e-18 84.7
Msa0764570 AT1G70950.1 60.656 61 24 0 8 68 16 76 3.03e-17 84.7
Msa0764570 AT5G40700.3 66.038 53 18 0 10 62 30 82 7.84e-17 80.9
Msa0764570 AT5G40700.1 66.038 53 18 0 10 62 30 82 1.42e-16 80.9
Msa0764570 AT5G40700.2 66.038 53 18 0 10 62 30 82 1.42e-16 80.9
Msa0764570 AT1G23060.1 62.295 61 23 0 8 68 16 76 3.65e-16 80.5
Msa0764570 AT1G23060.4 62.295 61 23 0 8 68 16 76 3.65e-16 80.5
Msa0764570 AT3G01710.4 61.404 57 21 1 7 62 20 76 1.87e-14 74.7
Msa0764570 AT3G01710.2 61.404 57 21 1 7 62 20 76 2.23e-14 75.5
Msa0764570 AT3G01710.1 61.404 57 21 1 7 62 20 76 2.33e-14 75.1
Msa0764570 AT3G01710.3 61.404 57 21 1 7 62 20 76 2.73e-14 75.1
Msa0764570 AT3G27350.3 67.347 49 15 1 23 70 3 51 3.53e-13 70.5

Find 131 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGTCTTTCCAACAATTT+TGG 0.117947 5_2:-24671780 Msa0764570:five_prime_UTR
ACTTCTTCCAAATACTTATT+TGG 0.140230 5_2:+24671330 None:intergenic
CAATATTCTTCTAGTTAAAT+AGG 0.170476 5_2:-24666453 Msa0764570:three_prime_UTR
ATTCTCTCCAAATAAGTATT+TGG 0.192425 5_2:-24671337 Msa0764570:CDS
ATCTGCCGCTTCAACTAAAA+AGG 0.192462 5_2:-24670500 Msa0764570:CDS
ATCTCTCATTATGGATAGTA+TGG 0.195712 5_2:-24670323 Msa0764570:CDS
AAGCAAACCTTAGATTTCTT+TGG 0.233076 5_2:+24670739 None:intergenic
TCAACTTTGCGGAAAGAAAA+TGG 0.242699 5_2:-24670025 Msa0764570:CDS
GAGCCAACAATTCGGCTTTC+CGG 0.260429 5_2:+24671232 None:intergenic
AGCCAACAATTCGGCTTTCC+GGG 0.287622 5_2:+24671233 None:intergenic
TTGGCTGGTTAAAATTCTTC+TGG 0.301994 5_2:+24670263 None:intergenic
TCTAGTTTAGTTTGCAATAG+TGG 0.304508 5_2:-24666486 Msa0764570:three_prime_UTR
TATGAGGAAATCTCTCATTA+TGG 0.319055 5_2:-24670332 Msa0764570:CDS
CATCATCATTTGTCTCTTTG+TGG 0.334602 5_2:+24672047 None:intergenic
GATAGGTTATCCCTGTGAAT+AGG 0.335244 5_2:-24670636 Msa0764570:intron
GGAGGAGGAAGTTGCGGTTT+CGG 0.336314 5_2:-24670980 Msa0764570:CDS
TTGCAAGTGTCTGTTTCTTT+TGG 0.337585 5_2:-24671402 Msa0764570:CDS
TTCTTCTGTGCTACTGATCC+AGG 0.363303 5_2:+24671291 None:intergenic
ATCAGCCTGGTTGGTGAAAT+CGG 0.364294 5_2:-24671030 Msa0764570:CDS
GGATCATCCAAAGAAATCTA+AGG 0.365888 5_2:-24670746 Msa0764570:intron
TGTGAGACTGATTCGGAATT+CGG 0.389869 5_2:-24671108 Msa0764570:CDS
AATATTCTTCTAGTTAAATA+GGG 0.390944 5_2:-24666452 Msa0764570:three_prime_UTR
TTCCAACTTCTTCAACTTTG+CGG 0.397164 5_2:-24670036 Msa0764570:CDS
CTAGAAGTAACTTGCCTCCT+AGG 0.410045 5_2:+24670460 None:intergenic
AAGCTACAACCCAAAATTGT+TGG 0.410245 5_2:+24671770 None:intergenic
TTCCGCAAAGTTGAAGAAGT+TGG 0.411188 5_2:+24670034 None:intergenic
GGAACTGGATCAGGCTTACT+TGG 0.415359 5_2:+24670382 None:intergenic
ATGATGATGTTACTGTAGTA+AGG 0.415437 5_2:-24672033 Msa0764570:five_prime_UTR
TAGTTCAAACTTCATGGAAT+GGG 0.430139 5_2:+24666366 None:intergenic
TTGTGAATTTCTTCAAGATA+AGG 0.433130 5_2:-24671748 Msa0764570:intron
ATAGGTTATCCCTGTGAATA+GGG 0.434793 5_2:-24670635 Msa0764570:intron
TTCCTCATAGTACGAGGAAC+TGG 0.439423 5_2:+24670346 None:intergenic
TGTCATCATTGACTTCTCCT+TGG 0.441614 5_2:+24666526 None:intergenic
ATCCTGGACAGGCTCCTTCA+AGG 0.441961 5_2:-24670075 Msa0764570:intron
TTCAGATCAGAAGAAAATAA+TGG 0.443228 5_2:-24671177 Msa0764570:CDS
CTTCTCTTGAGCCAACAATT+CGG 0.451413 5_2:+24671224 None:intergenic
TTGCACATGTCTATGAGCTT+AGG 0.451785 5_2:-24670406 Msa0764570:CDS
AGAAGGAGATGGAGAGGGAG+AGG 0.454029 5_2:-24671206 Msa0764570:CDS
GGTTCAGTAGTATGAGGAAC+TGG 0.457148 5_2:+24670367 None:intergenic
CTAGTTCAAACTTCATGGAA+TGG 0.459482 5_2:+24666365 None:intergenic
GGCCCGGAAAGCCGAATTGT+TGG 0.460858 5_2:-24671235 Msa0764570:CDS
AAAGCTAAAGAATGATTTCA+AGG 0.460883 5_2:-24667999 Msa0764570:CDS
CATAGACATGTGCAAAGATC+TGG 0.461378 5_2:+24670414 None:intergenic
CCACCTCAACTGATGAACTT+TGG 0.468288 5_2:+24670950 None:intergenic
AAAATGATTAATCTTGATCA+TGG 0.470551 5_2:-24671817 Msa0764570:five_prime_UTR
CTCAAGAGAAGGAGATGGAG+AGG 0.471982 5_2:-24671212 Msa0764570:CDS
TCCTGGACAGGCTCCTTCAA+GGG 0.472318 5_2:-24670074 Msa0764570:intron
TCCATCCTCTCAACGGTAGC+AGG 0.474386 5_2:+24669150 None:intergenic
TTCTTGCTTATCGCATTCCT+CGG 0.475098 5_2:+24671059 None:intergenic
TTGTCTCTTTGTGGTACTTG+AGG 0.482949 5_2:+24672056 None:intergenic
GAGAATAAAGAGGTGGAAAG+TGG 0.486653 5_2:-24670928 Msa0764570:CDS
GAGTCATGCGGATGATTTGA+AGG 0.487910 5_2:-24671004 Msa0764570:CDS
TGGAAGTGTTGTACGAACTT+TGG 0.489754 5_2:-24669118 Msa0764570:CDS
GCCTGGTTGGTGAAATCGGC+AGG 0.491982 5_2:-24671026 Msa0764570:CDS
GTCGAAATTTGAGATGCCTT+AGG 0.493805 5_2:+24670568 None:intergenic
TTGATAATGATTCACTGTCA+TGG 0.498358 5_2:-24671374 Msa0764570:CDS
GCCTGCTACCGTTGAGAGGA+TGG 0.498871 5_2:-24669151 Msa0764570:CDS
GAAGGAGGAGGAGGAAGTTG+CGG 0.503678 5_2:-24670986 Msa0764570:CDS
TGATAATGATTCACTGTCAT+GGG 0.504101 5_2:-24671373 Msa0764570:CDS
AATGATTATGAGTAAAGTAA+AGG 0.506528 5_2:+24671927 None:intergenic
GTAGTATGAGGAACTGGATC+AGG 0.506674 5_2:+24670373 None:intergenic
AGTGACATTAAATCAGAGAA+AGG 0.512134 5_2:-24669087 Msa0764570:CDS
GGTATAGATCTGAGCGGTAA+TGG 0.512864 5_2:-24671156 Msa0764570:CDS
ATCAGCTCCAACTAAAACAT+TGG 0.513745 5_2:-24670524 Msa0764570:CDS
ACCACGATAAGAAGTTGGTA+GGG 0.513841 5_2:+24667970 None:intergenic
AGAGAGGAGTAAATGAATAG+AGG 0.513950 5_2:-24666581 Msa0764570:three_prime_UTR
GCGTCTCCAAACAAAATTGA+AGG 0.515742 5_2:-24668913 Msa0764570:intron
GTGACATTAAATCAGAGAAA+GGG 0.517883 5_2:-24669086 Msa0764570:CDS
GAAGGAGATGGAGAGGGAGA+GGG 0.518011 5_2:-24671205 Msa0764570:CDS
GGATGATTTGAAGGAGGAGG+AGG 0.520239 5_2:-24670995 Msa0764570:CDS
CGTTGAAGAAGACAGATCTT+CGG 0.520469 5_2:-24670233 Msa0764570:CDS
TAACGCCTGTGAGACTGATT+CGG 0.522705 5_2:-24671115 Msa0764570:CDS
CAGATCTTCGGTAAAACAGC+AGG 0.523931 5_2:-24670221 Msa0764570:intron
GCCGTCGATAGCTGCACAGA+TGG 0.526151 5_2:-24666613 Msa0764570:exon
TCCATCTGTGCAGCTATCGA+CGG 0.533060 5_2:+24666612 None:intergenic
CGAAGATCTGTCTTCTTCAA+CGG 0.533181 5_2:+24670234 None:intergenic
GTTGAGAAGTGTGCTACACC+TGG 0.537623 5_2:-24671309 Msa0764570:CDS
GAAATTGAAATCAGCCTGGT+TGG 0.541512 5_2:-24671039 Msa0764570:CDS
TCTCTCATTATGGATAGTAT+GGG 0.541545 5_2:-24670322 Msa0764570:CDS
CCAAAGTTCATCAGTTGAGG+TGG 0.544431 5_2:-24670950 Msa0764570:CDS
AGTAACTTGCCTCCTAGGTA+AGG 0.548527 5_2:+24670465 None:intergenic
CTCTCATTATGGATAGTATG+GGG 0.551989 5_2:-24670321 Msa0764570:CDS
TGCGGATGATTTGAAGGAGG+AGG 0.552581 5_2:-24670998 Msa0764570:CDS
CGAATTGTTGGCTCAAGAGA+AGG 0.556667 5_2:-24671223 Msa0764570:CDS
AACCAGTTCCTCGTACTATG+AGG 0.558590 5_2:-24670348 Msa0764570:CDS
TTCGGTATTTCCAACACTCA+AGG 0.565830 5_2:-24671090 Msa0764570:CDS
GACCACGATAAGAAGTTGGT+AGG 0.566421 5_2:+24667969 None:intergenic
TGATGATGTTACTGTAGTAA+GGG 0.569285 5_2:-24672032 Msa0764570:five_prime_UTR
ATTCACTGTCATGGGAGAGA+TGG 0.571273 5_2:-24671365 Msa0764570:CDS
TTACCAAAGTTCATCAGTTG+AGG 0.572684 5_2:-24670953 Msa0764570:CDS
GAGAGGATGGAGAAAAGAAG+TGG 0.572851 5_2:-24669138 Msa0764570:CDS
GGAACTGGTTCAGTAGTATG+AGG 0.573216 5_2:+24670361 None:intergenic
ACCAGTGGCAGCAAAACCTA+AGG 0.581842 5_2:-24670584 Msa0764570:CDS
GAATTCCGAATCAGTCTCAC+AGG 0.583363 5_2:+24671110 None:intergenic
TGTGTACAAAGAGACAGAAA+AGG 0.583777 5_2:-24670800 Msa0764570:CDS
GCAAGAAATTGAAATCAGCC+TGG 0.587715 5_2:-24671043 Msa0764570:CDS
ATAAGAAGTTGGTAGGGGTG+TGG 0.595000 5_2:+24667976 None:intergenic
TCCTGCCGATTTCACCAACC+AGG 0.600282 5_2:+24671025 None:intergenic
GCTTAATTATGAACATTCTG+AGG 0.605220 5_2:-24666428 Msa0764570:three_prime_UTR
AGCGGTAATGGTAACGGTAA+CGG 0.605407 5_2:-24671144 Msa0764570:CDS
TGAGGTGGAGAATAAAGAGG+TGG 0.606003 5_2:-24670935 Msa0764570:CDS
CTTTGCGGAAAGAAAATGGA+AGG 0.609059 5_2:-24670021 Msa0764570:intron
GATCTGAGCGGTAATGGTAA+CGG 0.615279 5_2:-24671150 Msa0764570:CDS
GTTGGCTCAAGAGAAGGAGA+TGG 0.615563 5_2:-24671217 Msa0764570:CDS
GGTACAACTACCTTGAGTGT+TGG 0.618926 5_2:+24671080 None:intergenic
GAGGCAAGTTACTTCTAGTG+TGG 0.620877 5_2:-24670455 Msa0764570:CDS
CCTGGACAGGCTCCTTCAAG+GGG 0.624436 5_2:-24670073 Msa0764570:intron
CCACGATAAGAAGTTGGTAG+GGG 0.628287 5_2:+24667971 None:intergenic
TCAAGAGAAGGAGATGGAGA+GGG 0.629762 5_2:-24671211 Msa0764570:CDS
CGTTGAAGCTGAAGATGTGA+AGG 0.632249 5_2:-24670836 Msa0764570:CDS
AGTTGAGGTGGAGAATAAAG+AGG 0.632776 5_2:-24670938 Msa0764570:CDS
TAAATCAGAGAAAGGGAAAG+CGG 0.634535 5_2:-24669079 Msa0764570:intron
ATTACAAGAAGATTGCGGCC+CGG 0.636848 5_2:-24671251 Msa0764570:CDS
ATAGGCCTGCTACCGTTGAG+AGG 0.639643 5_2:-24669155 Msa0764570:intron
AACACATACTACAGACACAC+TGG 0.647033 5_2:+24666549 None:intergenic
GAAATCCGCAGTCCTTACCT+AGG 0.647614 5_2:-24670477 Msa0764570:CDS
CAGATGGAGAAGGTAAAGAG+AGG 0.647901 5_2:-24666597 Msa0764570:three_prime_UTR
GATAGCTGCACAGATGGAGA+AGG 0.648209 5_2:-24666607 Msa0764570:exon
ATCCGCAGTCCTTACCTAGG+AGG 0.650233 5_2:-24670474 Msa0764570:CDS
CCCCTACCAACTTCTTATCG+TGG 0.650660 5_2:-24667971 Msa0764570:CDS
AGCTCATTACAAGAAGATTG+CGG 0.664583 5_2:-24671256 Msa0764570:CDS
GAGGTGGAAAGTGGATCACA+TGG 0.674354 5_2:-24670919 Msa0764570:CDS
TGAAATCGGCAGGAGTCATG+CGG 0.674921 5_2:-24671016 Msa0764570:CDS
TCTCATTATGGATAGTATGG+GGG 0.688469 5_2:-24670320 Msa0764570:CDS
TGTCTGTAGTATGTGTTCCA+AGG 0.690046 5_2:-24666543 Msa0764570:three_prime_UTR
CACTCAAGGTAGTTGTACCG+AGG 0.698782 5_2:-24671076 Msa0764570:CDS
TCATGCGGATGATTTGAAGG+AGG 0.701389 5_2:-24671001 Msa0764570:CDS
AGAGATTTCCTCATAGTACG+AGG 0.729557 5_2:+24670340 None:intergenic
CTGGACAGGCTCCTTCAAGG+GGG 0.743728 5_2:-24670072 Msa0764570:intron
TGCCTCCTAGGTAAGGACTG+CGG 0.746167 5_2:+24670472 None:intergenic
AATAATGGTATAGATCTGAG+CGG 0.762921 5_2:-24671162 Msa0764570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATGTTAAATTTTTTAA+AGG - chr5_2:24667701-24667720 Msa0764570:intron 10.0%
!!! AATATATTTTTGTAATGTTT+CGG - chr5_2:24669774-24669793 Msa0764570:intron 10.0%
!!! ACTAATAAAATATTTCTTTT+CGG - chr5_2:24671314-24671333 Msa0764570:CDS 10.0%
!! AAACAACAAAAATGAAAAAT+GGG + chr5_2:24666669-24666688 None:intergenic 15.0%
!! AAAACAACAAAAATGAAAAA+TGG + chr5_2:24666670-24666689 None:intergenic 15.0%
!!! TTGTAAAAATGTTGTTTTTT+TGG - chr5_2:24666867-24666886 Msa0764570:intron 15.0%
!! CTATAAACTAAATATATGAT+TGG + chr5_2:24670267-24670286 None:intergenic 15.0%
!!! TCATATATTTAGTTTATAGA+AGG - chr5_2:24670268-24670287 Msa0764570:CDS 15.0%
!!! CATATATTTAGTTTATAGAA+GGG - chr5_2:24670269-24670288 Msa0764570:CDS 15.0%
!!! ATACCAAAAAGTTATTTTTA+AGG + chr5_2:24670565-24670584 None:intergenic 15.0%
!! TTTACATAATGAACATTATT+TGG + chr5_2:24671454-24671473 None:intergenic 15.0%
!!! AGAGTTTGTAAATTTAATTT+TGG + chr5_2:24671556-24671575 None:intergenic 15.0%
!!! TTTGTATATAAGTTGAATTT+AGG + chr5_2:24671601-24671620 None:intergenic 15.0%
!!! AATATTCTTCTAGTTAAATA+GGG - chr5_2:24671935-24671954 Msa0764570:five_prime_UTR 15.0%
!! AATGATTATGAGTAAAGTAA+AGG + chr5_2:24666463-24666482 None:intergenic 20.0%
!! AAAATGATTAATCTTGATCA+TGG - chr5_2:24666570-24666589 Msa0764570:three_prime_UTR 20.0%
!!! CAAACATTTTAATAAACACA+TGG + chr5_2:24666842-24666861 None:intergenic 20.0%
!!! ATTGTTGTTTGATTGTAAAA+AGG - chr5_2:24666894-24666913 Msa0764570:intron 20.0%
!!! TATTTGATTACCGTTTATTT+TGG - chr5_2:24667729-24667748 Msa0764570:intron 20.0%
!!! ATGATTTTTTACATATATCC+TGG - chr5_2:24668296-24668315 Msa0764570:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr5_2:24668713-24668732 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr5_2:24668712-24668731 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_2:24668506-24668525 Msa0764570:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr5_2:24668506-24668525 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr5_2:24668712-24668731 Msa0764570:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr5_2:24668713-24668732 Msa0764570:intron 20.0%
!! GAAATTTATAAGCAAAAACT+AGG + chr5_2:24668788-24668807 None:intergenic 20.0%
!! CAATTTATATATAGATTCCT+TGG + chr5_2:24668906-24668925 None:intergenic 20.0%
!! TTCAATTCAATACTTAACAA+TGG + chr5_2:24669053-24669072 None:intergenic 20.0%
!!! TCTATTTTGATGAAATTGTA+TGG - chr5_2:24669164-24669183 Msa0764570:intron 20.0%
!! TTCATAAATAATTTCCAAGA+GGG + chr5_2:24669213-24669232 None:intergenic 20.0%
!! ATTCATAAATAATTTCCAAG+AGG + chr5_2:24669214-24669233 None:intergenic 20.0%
!! CTTGGAAATTATTTATGAAT+AGG - chr5_2:24669214-24669233 Msa0764570:intron 20.0%
!! GATGAAAGAAAAAAATAGTT+TGG + chr5_2:24669396-24669415 None:intergenic 20.0%
!!! TGATTTTTTTAAAATCGACT+TGG - chr5_2:24669690-24669709 Msa0764570:intron 20.0%
!!! TAATGTTTCGGTTTAATTTA+GGG - chr5_2:24669786-24669805 Msa0764570:intron 20.0%
!!! CTTCATTTTAGAATCTATTT+TGG + chr5_2:24669889-24669908 None:intergenic 20.0%
!!! AATAGATTCTAAAATGAAGT+TGG - chr5_2:24669890-24669909 Msa0764570:intron 20.0%
!!! ATAGATTCTAAAATGAAGTT+GGG - chr5_2:24669891-24669910 Msa0764570:intron 20.0%
!!! TTTCTAGCTTTATAAATTCA+TGG + chr5_2:24669977-24669996 None:intergenic 20.0%
!!! CAACCTTAAAAATAACTTTT+TGG - chr5_2:24670559-24670578 Msa0764570:CDS 20.0%
!! TTTGATCATTATCTTTAGTA+TGG + chr5_2:24670776-24670795 None:intergenic 20.0%
!! GATTATAATACCCTAAAAAA+GGG - chr5_2:24670827-24670846 Msa0764570:CDS 20.0%
!! ATTATAATACCCTAAAAAAG+GGG - chr5_2:24670828-24670847 Msa0764570:CDS 20.0%
!! AGAACATTATTTAGATTGTT+TGG + chr5_2:24670994-24671013 None:intergenic 20.0%
!! AATGCAACTTATTAAGTAAA+AGG + chr5_2:24671040-24671059 None:intergenic 20.0%
!!! TTTTACTTAATAAGTTGCAT+TGG - chr5_2:24671039-24671058 Msa0764570:CDS 20.0%
!! ATAAGATATTGTCAATATGA+GGG + chr5_2:24671362-24671381 None:intergenic 20.0%
!! AATAAGATATTGTCAATATG+AGG + chr5_2:24671363-24671382 None:intergenic 20.0%
!!! ATTTAATTTTGGTTGAACTT+TGG + chr5_2:24671545-24671564 None:intergenic 20.0%
!! TCAACTTATATACAAAATCA+AGG - chr5_2:24671605-24671624 Msa0764570:intron 20.0%
!!! CAATATTCTTCTAGTTAAAT+AGG - chr5_2:24671934-24671953 Msa0764570:five_prime_UTR 20.0%
! TAGTAAGGGAAAAAAAAGAA+GGG - chr5_2:24666369-24666388 Msa0764570:three_prime_UTR 25.0%
! TATAAAAAAACATGTGCATG+TGG + chr5_2:24666424-24666443 None:intergenic 25.0%
!! TATGTCTTTCCAACAATTTT+GGG - chr5_2:24666608-24666627 Msa0764570:exon 25.0%
! TTGTGAATTTCTTCAAGATA+AGG - chr5_2:24666639-24666658 Msa0764570:intron 25.0%
!!! TTGTAAATCTGTTTTGTTCT+TGG - chr5_2:24666725-24666744 Msa0764570:intron 25.0%
!!! TGTAAATCTGTTTTGTTCTT+GGG - chr5_2:24666726-24666745 Msa0764570:intron 25.0%
!!! ATTGTTGTTGTTTGATTAGA+TGG - chr5_2:24666936-24666955 Msa0764570:intron 25.0%
!!! TTGTTGTTGTTTGATTAGAT+GGG - chr5_2:24666937-24666956 Msa0764570:intron 25.0%
! ATTCTCTCCAAATAAGTATT+TGG - chr5_2:24667050-24667069 Msa0764570:intron 25.0%
! ACTTCTTCCAAATACTTATT+TGG + chr5_2:24667060-24667079 None:intergenic 25.0%
!! ATTATTTTCTTCTGATCTGA+AGG + chr5_2:24667211-24667230 None:intergenic 25.0%
! TTCAGATCAGAAGAAAATAA+TGG - chr5_2:24667210-24667229 Msa0764570:intron 25.0%
! TGAAGAAAAAGATGTGAAAT+TGG - chr5_2:24667620-24667639 Msa0764570:intron 25.0%
!!! GGTTTGCTTTATTTCATATT+TGG - chr5_2:24667662-24667681 Msa0764570:intron 25.0%
! GATAACCTATCCAAAATAAA+CGG + chr5_2:24667742-24667761 None:intergenic 25.0%
! GTTATATATGGTGGTAAATT+TGG - chr5_2:24668224-24668243 Msa0764570:intron 25.0%
! TGGAAGGTAAATTATTGAAT+TGG - chr5_2:24668382-24668401 Msa0764570:intron 25.0%
!!! TGGCACTTTTATTGTTTTAT+AGG - chr5_2:24668402-24668421 Msa0764570:intron 25.0%
!!! ATGTTTCATGTACTAGTTTT+TGG - chr5_2:24668428-24668447 Msa0764570:intron 25.0%
!!! TGTTTCATGTACTAGTTTTT+GGG - chr5_2:24668429-24668448 Msa0764570:intron 25.0%
! TTTGGGCTTAATTAATGATT+TGG - chr5_2:24668446-24668465 Msa0764570:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_2:24668477-24668496 Msa0764570:intron 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr5_2:24668743-24668762 Msa0764570:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr5_2:24668744-24668763 Msa0764570:intron 25.0%
!!! AAGAAGGTTTTTTAATCGTA+TGG - chr5_2:24668838-24668857 Msa0764570:intron 25.0%
! GTACAATACATTTCATCTAA+AGG + chr5_2:24669007-24669026 None:intergenic 25.0%
! AATGTATTGTACTTCGTAAA+CGG - chr5_2:24669015-24669034 Msa0764570:intron 25.0%
!!! TCTGATTTAATGTCACTTTT+CGG + chr5_2:24669297-24669316 None:intergenic 25.0%
! AGAAGAAAACTACAAATAAG+GGG + chr5_2:24669371-24669390 None:intergenic 25.0%
! CAGAAGAAAACTACAAATAA+GGG + chr5_2:24669372-24669391 None:intergenic 25.0%
! TCAGAAGAAAACTACAAATA+AGG + chr5_2:24669373-24669392 None:intergenic 25.0%
!!! TTTTTCCTCTATTTTTCTTG+AGG + chr5_2:24669428-24669447 None:intergenic 25.0%
!!! GTCATTTTAAGAGAAAATCA+CGG + chr5_2:24669514-24669533 None:intergenic 25.0%
!! TGATTTTCTCTTAAAATGAC+TGG - chr5_2:24669514-24669533 Msa0764570:intron 25.0%
!!! GAGATGATATTTTGAAAGAT+AGG - chr5_2:24669597-24669616 Msa0764570:intron 25.0%
! TCAATGATACTTATTGTGTT+TGG - chr5_2:24669632-24669651 Msa0764570:intron 25.0%
! CAATGATACTTATTGTGTTT+GGG - chr5_2:24669633-24669652 Msa0764570:intron 25.0%
! AATGATACTTATTGTGTTTG+GGG - chr5_2:24669634-24669653 Msa0764570:intron 25.0%
!! GTAATGTTTCGGTTTAATTT+AGG - chr5_2:24669785-24669804 Msa0764570:intron 25.0%
! GAATTTATAAAGCTAGAAAC+TGG - chr5_2:24669978-24669997 Msa0764570:intron 25.0%
! TTTCGTAAAGAACGAATATT+TGG + chr5_2:24670188-24670207 None:intergenic 25.0%
! TTACTAACATATCTTAACAC+AGG - chr5_2:24670343-24670362 Msa0764570:CDS 25.0%
! AAAGCTAAAGAATGATTTCA+AGG - chr5_2:24670388-24670407 Msa0764570:CDS 25.0%
! ATTATCAGTTGTTAAACACA+AGG + chr5_2:24670672-24670691 None:intergenic 25.0%
! TGTGTTTAACAACTGATAAT+TGG - chr5_2:24670672-24670691 Msa0764570:intron 25.0%
! TACAGTTTATCAAGATTTCT+AGG - chr5_2:24670805-24670824 Msa0764570:CDS 25.0%
! GGATTATAATACCCTAAAAA+AGG - chr5_2:24670826-24670845 Msa0764570:CDS 25.0%
!! TGTGAAAATTTTCATACAAG+AGG - chr5_2:24670867-24670886 Msa0764570:CDS 25.0%
!! GTGAAAATTTTCATACAAGA+GGG - chr5_2:24670868-24670887 Msa0764570:CDS 25.0%
! CAACTTATTAAGTAAAAGGA+GGG + chr5_2:24671036-24671055 None:intergenic 25.0%
!!! TGCATTGGTCTTATTAATTA+CGG - chr5_2:24671054-24671073 Msa0764570:CDS 25.0%
!! TATCACTGAATAAAAAGCAT+AGG - chr5_2:24671198-24671217 Msa0764570:CDS 25.0%
!! TAAAAAGCATAGGTTGAATA+TGG - chr5_2:24671208-24671227 Msa0764570:CDS 25.0%
!! AAAATATTTCTTTTCGGCAA+AGG - chr5_2:24671320-24671339 Msa0764570:CDS 25.0%
! TTAATAATGTTGCGTCTAAA+AGG - chr5_2:24671409-24671428 Msa0764570:CDS 25.0%
!!! ATTTTCTAGTTCAAACTTCA+TGG + chr5_2:24672030-24672049 None:intergenic 25.0%
! ATGATGATGTTACTGTAGTA+AGG - chr5_2:24666354-24666373 Msa0764570:three_prime_UTR 30.0%
! TGATGATGTTACTGTAGTAA+GGG - chr5_2:24666355-24666374 Msa0764570:three_prime_UTR 30.0%
GTAGTAAGGGAAAAAAAAGA+AGG - chr5_2:24666368-24666387 Msa0764570:three_prime_UTR 30.0%
! CTATGTCTTTCCAACAATTT+TGG - chr5_2:24666607-24666626 Msa0764570:exon 30.0%
!! TTGATAATGATTCACTGTCA+TGG - chr5_2:24667013-24667032 Msa0764570:intron 30.0%
! TGATAATGATTCACTGTCAT+GGG - chr5_2:24667014-24667033 Msa0764570:intron 30.0%
AATAATGGTATAGATCTGAG+CGG - chr5_2:24667225-24667244 Msa0764570:intron 30.0%
AAGCAAACCTTAGATTTCTT+TGG + chr5_2:24667651-24667670 None:intergenic 30.0%
!!! GATTACCGTTTATTTTGGAT+AGG - chr5_2:24667734-24667753 Msa0764570:intron 30.0%
! CATTATTTTCCCTATTCACA+GGG + chr5_2:24667764-24667783 None:intergenic 30.0%
!!! CACTGGTTTCTTTTTTGTTT+TGG + chr5_2:24667790-24667809 None:intergenic 30.0%
CAAAACAAAAAAGAAACCAG+TGG - chr5_2:24667788-24667807 Msa0764570:intron 30.0%
!!! ATTTCCCTTTTTAGTTGAAG+CGG + chr5_2:24667895-24667914 None:intergenic 30.0%
TATGAGGAAATCTCTCATTA+TGG - chr5_2:24668055-24668074 Msa0764570:intron 30.0%
ATCTCTCATTATGGATAGTA+TGG - chr5_2:24668064-24668083 Msa0764570:intron 30.0%
TCTCTCATTATGGATAGTAT+GGG - chr5_2:24668065-24668084 Msa0764570:intron 30.0%
CTGCAGTTCATTGTTATATA+TGG - chr5_2:24668212-24668231 Msa0764570:intron 30.0%
CAGTTCATTGTTATATATGG+TGG - chr5_2:24668215-24668234 Msa0764570:intron 30.0%
! TTTTTACATATATCCTGGAC+AGG - chr5_2:24668301-24668320 Msa0764570:intron 30.0%
GTAACCAACAAATAACTCAA+GGG + chr5_2:24668473-24668492 None:intergenic 30.0%
TGTAACCAACAAATAACTCA+AGG + chr5_2:24668474-24668493 None:intergenic 30.0%
GCTAACAGATACTAACTTAA+GGG + chr5_2:24668533-24668552 None:intergenic 30.0%
! CTTTTGCCAAAACGTTAAAT+AGG - chr5_2:24668575-24668594 Msa0764570:intron 30.0%
TTGACGAAAGATGACTTAAA+GGG - chr5_2:24668684-24668703 Msa0764570:intron 30.0%
ACTAGGCTTAATTAATGATG+TGG + chr5_2:24668771-24668790 None:intergenic 30.0%
TCTTATCATATGCTTTGTCA+AGG + chr5_2:24669119-24669138 None:intergenic 30.0%
!!! TGATTTAATGTCACTTTTCG+GGG + chr5_2:24669295-24669314 None:intergenic 30.0%
!!! CTGATTTAATGTCACTTTTC+GGG + chr5_2:24669296-24669315 None:intergenic 30.0%
AGTGACATTAAATCAGAGAA+AGG - chr5_2:24669300-24669319 Msa0764570:intron 30.0%
GTGACATTAAATCAGAGAAA+GGG - chr5_2:24669301-24669320 Msa0764570:intron 30.0%
GAAGAAAACTACAAATAAGG+GGG + chr5_2:24669370-24669389 None:intergenic 30.0%
GGAAAAACCTAATACAAAAG+TGG - chr5_2:24669441-24669460 Msa0764570:intron 30.0%
!! CTTTCTACCACTTTTGTATT+AGG + chr5_2:24669451-24669470 None:intergenic 30.0%
!! AGAGTACCTTCAATTTTGTT+TGG + chr5_2:24669483-24669502 None:intergenic 30.0%
!! TGATATTTTGAAAGATAGGC+AGG - chr5_2:24669601-24669620 Msa0764570:intron 30.0%
!! GATATTTTGAAAGATAGGCA+GGG - chr5_2:24669602-24669621 Msa0764570:intron 30.0%
ATGATACTTATTGTGTTTGG+GGG - chr5_2:24669635-24669654 Msa0764570:intron 30.0%
! ACTTGGTTAAAACTGTGTTT+TGG - chr5_2:24669707-24669726 Msa0764570:intron 30.0%
! TTATAGCTTTTGCTTAACAG+TGG - chr5_2:24669916-24669935 Msa0764570:intron 30.0%
AAACTACTATTCATCACTTC+TGG - chr5_2:24670119-24670138 Msa0764570:intron 30.0%
!! ATATATGATTGGTTTCACAG+TGG + chr5_2:24670256-24670275 None:intergenic 30.0%
! GGAAAGTTATATGTTGCTTA+AGG - chr5_2:24670526-24670545 Msa0764570:CDS 30.0%
AACAACTGATAATTGGAGTT+TGG - chr5_2:24670679-24670698 Msa0764570:intron 30.0%
GCAACTTATTAAGTAAAAGG+AGG + chr5_2:24671037-24671056 None:intergenic 30.0%
TTGAGTGAAATTCATTCATG+CGG + chr5_2:24671109-24671128 None:intergenic 30.0%
TAGACGCAACATTATTAACA+TGG + chr5_2:24671407-24671426 None:intergenic 30.0%
!!! AGAGTGAGTTGATTGATTTT+TGG + chr5_2:24671499-24671518 None:intergenic 30.0%
!! ATACAAAATCAAGGTGTTGT+TGG - chr5_2:24671614-24671633 Msa0764570:intron 30.0%
!! TCTAGTTTAGTTTGCAATAG+TGG - chr5_2:24671901-24671920 Msa0764570:five_prime_UTR 30.0%
GCTTAATTATGAACATTCTG+AGG - chr5_2:24671959-24671978 Msa0764570:five_prime_UTR 30.0%
TAGTTCAAACTTCATGGAAT+GGG + chr5_2:24672024-24672043 None:intergenic 30.0%
CATCATCATTTGTCTCTTTG+TGG + chr5_2:24666343-24666362 None:intergenic 35.0%
AAGCTACAACCCAAAATTGT+TGG + chr5_2:24666620-24666639 None:intergenic 35.0%
!! AATCTGTTTTGTTCTTGGGT+TGG - chr5_2:24666730-24666749 Msa0764570:intron 35.0%
!! TTGCAAGTGTCTGTTTCTTT+TGG - chr5_2:24666985-24667004 Msa0764570:intron 35.0%
AGCTCATTACAAGAAGATTG+CGG - chr5_2:24667131-24667150 Msa0764570:intron 35.0%
TTACCAAAGTTCATCAGTTG+AGG - chr5_2:24667434-24667453 Msa0764570:intron 35.0%
! TTTATGCACACGTCTTTTTC+AGG + chr5_2:24667513-24667532 None:intergenic 35.0%
TGTGTACAAAGAGACAGAAA+AGG - chr5_2:24667587-24667606 Msa0764570:intron 35.0%
GGATCATCCAAAGAAATCTA+AGG - chr5_2:24667641-24667660 Msa0764570:intron 35.0%
ATAGGTTATCCCTGTGAATA+GGG - chr5_2:24667752-24667771 Msa0764570:intron 35.0%
! GCATTATTTTCCCTATTCAC+AGG + chr5_2:24667765-24667784 None:intergenic 35.0%
!!! GATGTAGGCTTTGAACTTTT+CGG + chr5_2:24667846-24667865 None:intergenic 35.0%
ATCAGCTCCAACTAAAACAT+TGG - chr5_2:24667863-24667882 Msa0764570:intron 35.0%
CTCTCATTATGGATAGTATG+GGG - chr5_2:24668066-24668085 Msa0764570:intron 35.0%
TCTCATTATGGATAGTATGG+GGG - chr5_2:24668067-24668086 Msa0764570:intron 35.0%
! TTGGCTGGTTAAAATTCTTC+TGG + chr5_2:24668127-24668146 None:intergenic 35.0%
! TCTTCTTCAACGGAAGTTTT+TGG + chr5_2:24668146-24668165 None:intergenic 35.0%
TTCCAACTTCTTCAACTTTG+CGG - chr5_2:24668351-24668370 Msa0764570:intron 35.0%
TCAACTTTGCGGAAAGAAAA+TGG - chr5_2:24668362-24668381 Msa0764570:intron 35.0%
GGCTAACAGATACTAACTTA+AGG + chr5_2:24668534-24668553 None:intergenic 35.0%
! ACTGATGGTGAGGATTTATT+TGG + chr5_2:24668555-24668574 None:intergenic 35.0%
! CATGTGCCTATTTAACGTTT+TGG + chr5_2:24668584-24668603 None:intergenic 35.0%
AACCATTAAGCCAATGTCTA+AGG + chr5_2:24668642-24668661 None:intergenic 35.0%
GTTGACGAAAGATGACTTAA+AGG - chr5_2:24668683-24668702 Msa0764570:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr5_2:24668751-24668770 None:intergenic 35.0%
TCTTAGCAACACATTGAAGA+AGG - chr5_2:24668822-24668841 Msa0764570:intron 35.0%
CTTGGTTGAAGTTCTTGAAA+AGG + chr5_2:24668888-24668907 None:intergenic 35.0%
!! CTTTTCAAGAACTTCAACCA+AGG - chr5_2:24668886-24668905 Msa0764570:intron 35.0%
CAAGTCGCAAATGATATTGT+TGG + chr5_2:24668972-24668991 None:intergenic 35.0%
! AATTGAATCTGCTTGCTAGT+TGG - chr5_2:24669066-24669085 Msa0764570:intron 35.0%
ATATGCTTTGTCAAGGAAAG+AGG + chr5_2:24669112-24669131 None:intergenic 35.0%
! TTTTTGTATGATGACCCTCT+TGG - chr5_2:24669196-24669215 Msa0764570:intron 35.0%
TAAATCAGAGAAAGGGAAAG+CGG - chr5_2:24669308-24669327 Msa0764570:intron 35.0%
TCAGTCCTCAAGAAAAATAG+AGG - chr5_2:24669420-24669439 Msa0764570:intron 35.0%
CATTTCCTATATTCCTGTGT+TGG - chr5_2:24669537-24669556 Msa0764570:intron 35.0%
GGAGACATAAAAGTGATTGT+AGG - chr5_2:24669807-24669826 Msa0764570:intron 35.0%
! AAAAGTGATTGTAGGAGCAT+AGG - chr5_2:24669815-24669834 Msa0764570:intron 35.0%
!! TAGGAGCATAGGATTGATTT+TGG - chr5_2:24669826-24669845 Msa0764570:intron 35.0%
CAAAATCCAAACGCACTTTA+TGG - chr5_2:24670039-24670058 Msa0764570:CDS 35.0%
ATTGAACCATAAAGTGCGTT+TGG + chr5_2:24670048-24670067 None:intergenic 35.0%
CTAACATATCTTAACACAGG+AGG - chr5_2:24670346-24670365 Msa0764570:CDS 35.0%
! TTTTGACCACGATAAGAAGT+TGG + chr5_2:24670425-24670444 None:intergenic 35.0%
TTCCATATTCACAGCTGAAA+TGG - chr5_2:24670505-24670524 Msa0764570:CDS 35.0%
TTCCATTTCAGCTGTGAATA+TGG + chr5_2:24670510-24670529 None:intergenic 35.0%
AACTGATAATTGGAGTTTGG+TGG - chr5_2:24670682-24670701 Msa0764570:intron 35.0%
ACTGATAATTGGAGTTTGGT+GGG - chr5_2:24670683-24670702 Msa0764570:intron 35.0%
AATACCCTAAAAAAGGGGAA+TGG - chr5_2:24670833-24670852 Msa0764570:CDS 35.0%
!!! CAATCCATTCCCCTTTTTTA+GGG + chr5_2:24670840-24670859 None:intergenic 35.0%
AATAGCATTGTTTAGGGGAT+TGG + chr5_2:24670953-24670972 None:intergenic 35.0%
AGGTCAATAGCATTGTTTAG+GGG + chr5_2:24670958-24670977 None:intergenic 35.0%
GAGGTCAATAGCATTGTTTA+GGG + chr5_2:24670959-24670978 None:intergenic 35.0%
AGAGGTCAATAGCATTGTTT+AGG + chr5_2:24670960-24670979 None:intergenic 35.0%
!! TGTTTGGTGTGATATAGTAG+AGG + chr5_2:24670978-24670997 None:intergenic 35.0%
!! TGGTCTTATTAATTACGGAG+TGG - chr5_2:24671059-24671078 Msa0764570:CDS 35.0%
!! GGTCTTATTAATTACGGAGT+GGG - chr5_2:24671060-24671079 Msa0764570:CDS 35.0%
!! GCCTCGTATTTTATTTAGTC+GGG + chr5_2:24671086-24671105 None:intergenic 35.0%
!! GGCCTCGTATTTTATTTAGT+CGG + chr5_2:24671087-24671106 None:intergenic 35.0%
TGAGTGAAATTCATTCATGC+GGG + chr5_2:24671108-24671127 None:intergenic 35.0%
! AGCATAGGTTGAATATGGTT+TGG - chr5_2:24671213-24671232 Msa0764570:CDS 35.0%
CTCTAATCCAAACATACACT+AGG - chr5_2:24671572-24671591 Msa0764570:intron 35.0%
TAGGAAACCTAGTGTATGTT+TGG + chr5_2:24671582-24671601 None:intergenic 35.0%
TTCATTGTGCTTACACATAG+TGG - chr5_2:24671644-24671663 Msa0764570:intron 35.0%
AACACAATAAGGCCTTAGAA+TGG + chr5_2:24671690-24671709 None:intergenic 35.0%
GAACTCAATGGAACACAATA+AGG + chr5_2:24671701-24671720 None:intergenic 35.0%
! TTTTCATGACTACTCATGCA+GGG - chr5_2:24671734-24671753 Msa0764570:intron 35.0%
AGAGAGGAGTAAATGAATAG+AGG - chr5_2:24671806-24671825 Msa0764570:five_prime_UTR 35.0%
CTAGTTCAAACTTCATGGAA+TGG + chr5_2:24672025-24672044 None:intergenic 35.0%
TTGTCTCTTTGTGGTACTTG+AGG + chr5_2:24666334-24666353 None:intergenic 40.0%
CTTCTCTTGAGCCAACAATT+CGG + chr5_2:24667166-24667185 None:intergenic 40.0%
!! TGTGAGACTGATTCGGAATT+CGG - chr5_2:24667279-24667298 Msa0764570:intron 40.0%
TTCGGTATTTCCAACACTCA+AGG - chr5_2:24667297-24667316 Msa0764570:intron 40.0%
TTCTTGCTTATCGCATTCCT+CGG + chr5_2:24667331-24667350 None:intergenic 40.0%
GCAAGAAATTGAAATCAGCC+TGG - chr5_2:24667344-24667363 Msa0764570:intron 40.0%
GAAATTGAAATCAGCCTGGT+TGG - chr5_2:24667348-24667367 Msa0764570:intron 40.0%
AGTTGAGGTGGAGAATAAAG+AGG - chr5_2:24667449-24667468 Msa0764570:intron 40.0%
GAGAATAAAGAGGTGGAAAG+TGG - chr5_2:24667459-24667478 Msa0764570:intron 40.0%
GATAGGTTATCCCTGTGAAT+AGG - chr5_2:24667751-24667770 Msa0764570:intron 40.0%
! GTCGAAATTTGAGATGCCTT+AGG + chr5_2:24667822-24667841 None:intergenic 40.0%
!!! GTTTTAGTTGGAGCTGATGT+AGG + chr5_2:24667861-24667880 None:intergenic 40.0%
!!! GCAGATGCCAATGTTTTAGT+TGG + chr5_2:24667873-24667892 None:intergenic 40.0%
! ATCTGCCGCTTCAACTAAAA+AGG - chr5_2:24667887-24667906 Msa0764570:intron 40.0%
! TCTGCCGCTTCAACTAAAAA+GGG - chr5_2:24667888-24667907 Msa0764570:intron 40.0%
CATAGACATGTGCAAAGATC+TGG + chr5_2:24667976-24667995 None:intergenic 40.0%
TTGCACATGTCTATGAGCTT+AGG - chr5_2:24667981-24668000 Msa0764570:CDS 40.0%
AGAGATTTCCTCATAGTACG+AGG + chr5_2:24668050-24668069 None:intergenic 40.0%
TATGGATAGTATGGGGGATA+AGG - chr5_2:24668073-24668092 Msa0764570:intron 40.0%
CGAAGATCTGTCTTCTTCAA+CGG + chr5_2:24668156-24668175 None:intergenic 40.0%
CGTTGAAGAAGACAGATCTT+CGG - chr5_2:24668154-24668173 Msa0764570:intron 40.0%
TCGGTAAAACAGCAGGTAAT+TGG - chr5_2:24668173-24668192 Msa0764570:intron 40.0%
TTCCGCAAAGTTGAAGAAGT+TGG + chr5_2:24668356-24668375 None:intergenic 40.0%
CTTTGCGGAAAGAAAATGGA+AGG - chr5_2:24668366-24668385 Msa0764570:intron 40.0%
TGGTCCCTTGAGTTATTTGT+TGG - chr5_2:24668466-24668485 Msa0764570:intron 40.0%
!! ACGTTTTGGCAAAAGACTGA+TGG + chr5_2:24668570-24668589 None:intergenic 40.0%
TGTGTATCCACCTTAGACAT+TGG - chr5_2:24668629-24668648 Msa0764570:intron 40.0%
CATTAAGCCAATGTCTAAGG+TGG + chr5_2:24668639-24668658 None:intergenic 40.0%
!! CACCTTAGACATTGGCTTAA+TGG - chr5_2:24668637-24668656 Msa0764570:intron 40.0%
!!! TGGCTTAATGGTTTTGACGA+TGG - chr5_2:24668649-24668668 Msa0764570:intron 40.0%
!!! GGCTTAATGGTTTTGACGAT+GGG - chr5_2:24668650-24668669 Msa0764570:intron 40.0%
!!! GCTTAATGGTTTTGACGATG+GGG - chr5_2:24668651-24668670 Msa0764570:intron 40.0%
!!! CTTAATGGTTTTGACGATGG+GGG - chr5_2:24668652-24668671 Msa0764570:intron 40.0%
! TCTTTTCTCCATCCTCTCAA+CGG + chr5_2:24669247-24669266 None:intergenic 40.0%
!! TGGAAGTGTTGTACGAACTT+TGG - chr5_2:24669269-24669288 Msa0764570:intron 40.0%
GCGTCTCCAAACAAAATTGA+AGG - chr5_2:24669474-24669493 Msa0764570:intron 40.0%
TAAGAGAAAATCACGGAACG+AGG + chr5_2:24669507-24669526 None:intergenic 40.0%
TGAAGCCAACACAGGAATAT+AGG + chr5_2:24669545-24669564 None:intergenic 40.0%
CATCACTTCTGGTCAAATTG+AGG - chr5_2:24670130-24670149 Msa0764570:intron 40.0%
AGTTTATAGAAGGGCTGATC+TGG - chr5_2:24670278-24670297 Msa0764570:CDS 40.0%
GTTTATAGAAGGGCTGATCT+GGG - chr5_2:24670279-24670298 Msa0764570:CDS 40.0%
!! ACCACGATAAGAAGTTGGTA+GGG + chr5_2:24670420-24670439 None:intergenic 40.0%
ATCAAAAAGTCGCGCAGAAA+AGG - chr5_2:24670448-24670467 Msa0764570:CDS 40.0%
ATAACCAAAACAAGACAGCC+AGG + chr5_2:24670710-24670729 None:intergenic 40.0%
!!! CCAATCCATTCCCCTTTTTT+AGG + chr5_2:24670841-24670860 None:intergenic 40.0%
CCTAAAAAAGGGGAATGGAT+TGG - chr5_2:24670838-24670857 Msa0764570:CDS 40.0%
GCCCGACTAAATAAAATACG+AGG - chr5_2:24671082-24671101 Msa0764570:CDS 40.0%
ATTCAGTGATAGTCGAGTCA+AGG + chr5_2:24671189-24671208 None:intergenic 40.0%
GGTATATGTTGCGACATGTT+TGG - chr5_2:24671234-24671253 Msa0764570:CDS 40.0%
AGGACATTGTCAGAACTCAA+TGG + chr5_2:24671713-24671732 None:intergenic 40.0%
GCATGAGTAGTCATGAAAAC+AGG + chr5_2:24671733-24671752 None:intergenic 40.0%
! GTTTTCATGACTACTCATGC+AGG - chr5_2:24671733-24671752 Msa0764570:intron 40.0%
AACACATACTACAGACACAC+TGG + chr5_2:24671841-24671860 None:intergenic 40.0%
TGTCTGTAGTATGTGTTCCA+AGG - chr5_2:24671844-24671863 Msa0764570:five_prime_UTR 40.0%
!! TGTCATCATTGACTTCTCCT+TGG + chr5_2:24671864-24671883 None:intergenic 40.0%
ATTCACTGTCATGGGAGAGA+TGG - chr5_2:24667022-24667041 Msa0764570:intron 45.0%
! TTCTTCTGTGCTACTGATCC+AGG + chr5_2:24667099-24667118 None:intergenic 45.0%
ATTACAAGAAGATTGCGGCC+CGG - chr5_2:24667136-24667155 Msa0764570:intron 45.0%
!! CGAATTGTTGGCTCAAGAGA+AGG - chr5_2:24667164-24667183 Msa0764570:intron 45.0%
TCAAGAGAAGGAGATGGAGA+GGG - chr5_2:24667176-24667195 Msa0764570:intron 45.0%
GGTATAGATCTGAGCGGTAA+TGG - chr5_2:24667231-24667250 Msa0764570:intron 45.0%
! GATCTGAGCGGTAATGGTAA+CGG - chr5_2:24667237-24667256 Msa0764570:intron 45.0%
!! AGCGGTAATGGTAACGGTAA+CGG - chr5_2:24667243-24667262 Msa0764570:intron 45.0%
TAACGCCTGTGAGACTGATT+CGG - chr5_2:24667272-24667291 Msa0764570:intron 45.0%
GAATTCCGAATCAGTCTCAC+AGG + chr5_2:24667280-24667299 None:intergenic 45.0%
GGTACAACTACCTTGAGTGT+TGG + chr5_2:24667310-24667329 None:intergenic 45.0%
!! ATCAGCCTGGTTGGTGAAAT+CGG - chr5_2:24667357-24667376 Msa0764570:intron 45.0%
GAGTCATGCGGATGATTTGA+AGG - chr5_2:24667383-24667402 Msa0764570:intron 45.0%
TCATGCGGATGATTTGAAGG+AGG - chr5_2:24667386-24667405 Msa0764570:intron 45.0%
CCACCTCAACTGATGAACTT+TGG + chr5_2:24667440-24667459 None:intergenic 45.0%
CCAAAGTTCATCAGTTGAGG+TGG - chr5_2:24667437-24667456 Msa0764570:intron 45.0%
TGAGGTGGAGAATAAAGAGG+TGG - chr5_2:24667452-24667471 Msa0764570:intron 45.0%
CGTTGAAGCTGAAGATGTGA+AGG - chr5_2:24667551-24667570 Msa0764570:intron 45.0%
! AGTAACTTGCCTCCTAGGTA+AGG + chr5_2:24667925-24667944 None:intergenic 45.0%
! CTAGAAGTAACTTGCCTCCT+AGG + chr5_2:24667930-24667949 None:intergenic 45.0%
GAGGCAAGTTACTTCTAGTG+TGG - chr5_2:24667932-24667951 Msa0764570:intron 45.0%
GTAGTATGAGGAACTGGATC+AGG + chr5_2:24668017-24668036 None:intergenic 45.0%
GGTTCAGTAGTATGAGGAAC+TGG + chr5_2:24668023-24668042 None:intergenic 45.0%
! GGAACTGGTTCAGTAGTATG+AGG + chr5_2:24668029-24668048 None:intergenic 45.0%
AACCAGTTCCTCGTACTATG+AGG - chr5_2:24668039-24668058 Msa0764570:intron 45.0%
TTCCTCATAGTACGAGGAAC+TGG + chr5_2:24668044-24668063 None:intergenic 45.0%
!!! CTTCAACGGAAGTTTTTGGC+TGG + chr5_2:24668142-24668161 None:intergenic 45.0%
CAGATCTTCGGTAAAACAGC+AGG - chr5_2:24668166-24668185 Msa0764570:intron 45.0%
! TTGGCAAAAGACTGATGGTG+AGG + chr5_2:24668565-24668584 None:intergenic 45.0%
GAGAGGATGGAGAAAAGAAG+TGG - chr5_2:24669249-24669268 Msa0764570:intron 45.0%
CACTTAAGTGAAGCCAACAC+AGG + chr5_2:24669553-24669572 None:intergenic 45.0%
AGTGTGCATTTGTCTCACAG+CGG + chr5_2:24670091-24670110 None:intergenic 45.0%
!! ATAAGAAGTTGGTAGGGGTG+TGG + chr5_2:24670414-24670433 None:intergenic 45.0%
!! CCACGATAAGAAGTTGGTAG+GGG + chr5_2:24670419-24670438 None:intergenic 45.0%
! GACCACGATAAGAAGTTGGT+AGG + chr5_2:24670421-24670440 None:intergenic 45.0%
ACCACCAACACATGCTCATT+TGG + chr5_2:24670753-24670772 None:intergenic 45.0%
CCTTAGAATGGAGCACAATG+TGG + chr5_2:24671678-24671697 None:intergenic 45.0%
CCACATTGTGCTCCATTCTA+AGG - chr5_2:24671675-24671694 Msa0764570:intron 45.0%
CAGATGGAGAAGGTAAAGAG+AGG - chr5_2:24671790-24671809 Msa0764570:five_prime_UTR 45.0%
! GTTGAGAAGTGTGCTACACC+TGG - chr5_2:24667078-24667097 Msa0764570:intron 50.0%
AGCCAACAATTCGGCTTTCC+GGG + chr5_2:24667157-24667176 None:intergenic 50.0%
GAGCCAACAATTCGGCTTTC+CGG + chr5_2:24667158-24667177 None:intergenic 50.0%
! GTTGGCTCAAGAGAAGGAGA+TGG - chr5_2:24667170-24667189 Msa0764570:intron 50.0%
CTCAAGAGAAGGAGATGGAG+AGG - chr5_2:24667175-24667194 Msa0764570:intron 50.0%
CACTCAAGGTAGTTGTACCG+AGG - chr5_2:24667311-24667330 Msa0764570:intron 50.0%
TGAAATCGGCAGGAGTCATG+CGG - chr5_2:24667371-24667390 Msa0764570:intron 50.0%
TGCGGATGATTTGAAGGAGG+AGG - chr5_2:24667389-24667408 Msa0764570:intron 50.0%
GGATGATTTGAAGGAGGAGG+AGG - chr5_2:24667392-24667411 Msa0764570:intron 50.0%
GAGGTGGAAAGTGGATCACA+TGG - chr5_2:24667468-24667487 Msa0764570:intron 50.0%
ACCAGTGGCAGCAAAACCTA+AGG - chr5_2:24667803-24667822 Msa0764570:intron 50.0%
GAAATCCGCAGTCCTTACCT+AGG - chr5_2:24667910-24667929 Msa0764570:intron 50.0%
GGAACTGGATCAGGCTTACT+TGG + chr5_2:24668008-24668027 None:intergenic 50.0%
TCAGAGAAAGGGAAAGCGGT+AGG - chr5_2:24669312-24669331 Msa0764570:intron 50.0%
GGAGCTTCTTGCTCAAGTCA+CGG - chr5_2:24669999-24670018 Msa0764570:intron 50.0%
! GGCTGATCTGGGATATGAGA+TGG - chr5_2:24670290-24670309 Msa0764570:CDS 50.0%
CCCCTACCAACTTCTTATCG+TGG - chr5_2:24670416-24670435 Msa0764570:CDS 50.0%
! AATTGGAGTTTGGTGGGACC+TGG - chr5_2:24670689-24670708 Msa0764570:intron 50.0%
CCAACACATGCTCATTTGGC+AGG + chr5_2:24670749-24670768 None:intergenic 50.0%
CCTGCCAAATGAGCATGTGT+TGG - chr5_2:24670746-24670765 Msa0764570:intron 50.0%
GCCAAATGAGCATGTGTTGG+TGG - chr5_2:24670749-24670768 Msa0764570:CDS 50.0%
TCCATCTGTGCAGCTATCGA+CGG + chr5_2:24671778-24671797 None:intergenic 50.0%
GATAGCTGCACAGATGGAGA+AGG - chr5_2:24671780-24671799 Msa0764570:five_prime_UTR 50.0%
AGAAGGAGATGGAGAGGGAG+AGG - chr5_2:24667181-24667200 Msa0764570:intron 55.0%
GAAGGAGATGGAGAGGGAGA+GGG - chr5_2:24667182-24667201 Msa0764570:intron 55.0%
!! TCCTGCCGATTTCACCAACC+AGG + chr5_2:24667365-24667384 None:intergenic 55.0%
GAAGGAGGAGGAGGAAGTTG+CGG - chr5_2:24667401-24667420 Msa0764570:intron 55.0%
GGAGGAGGAAGTTGCGGTTT+CGG - chr5_2:24667407-24667426 Msa0764570:intron 55.0%
! GCCTTAGGTTTTGCTGCCAC+TGG + chr5_2:24667807-24667826 None:intergenic 55.0%
ATCCGCAGTCCTTACCTAGG+AGG - chr5_2:24667913-24667932 Msa0764570:intron 55.0%
TGCCTCCTAGGTAAGGACTG+CGG + chr5_2:24667918-24667937 None:intergenic 55.0%
ATCCTGGACAGGCTCCTTCA+AGG - chr5_2:24668312-24668331 Msa0764570:intron 55.0%
TCCTGGACAGGCTCCTTCAA+GGG - chr5_2:24668313-24668332 Msa0764570:intron 55.0%
TTTGACGCAGTCCCCCTTGA+AGG + chr5_2:24668329-24668348 None:intergenic 55.0%
TTCAAGGGGGACTGCGTCAA+AGG - chr5_2:24668328-24668347 Msa0764570:intron 55.0%
ATAGGCCTGCTACCGTTGAG+AGG - chr5_2:24669232-24669251 Msa0764570:intron 55.0%
TCCATCCTCTCAACGGTAGC+AGG + chr5_2:24669240-24669259 None:intergenic 55.0%
!!! GGGACCTGGCTGTCTTGTTT+TGG - chr5_2:24670703-24670722 Msa0764570:intron 55.0%
GGCCCGGAAAGCCGAATTGT+TGG - chr5_2:24667152-24667171 Msa0764570:intron 60.0%
!! GCCTGGTTGGTGAAATCGGC+AGG - chr5_2:24667361-24667380 Msa0764570:intron 60.0%
CCTGGACAGGCTCCTTCAAG+GGG - chr5_2:24668314-24668333 Msa0764570:intron 60.0%
CTGGACAGGCTCCTTCAAGG+GGG - chr5_2:24668315-24668334 Msa0764570:intron 60.0%
GCCTGCTACCGTTGAGAGGA+TGG - chr5_2:24669236-24669255 Msa0764570:intron 60.0%
GCCGTCGATAGCTGCACAGA+TGG - chr5_2:24671774-24671793 Msa0764570:five_prime_UTR 60.0%
CCCCTTGAAGGAGCCTGTCC+AGG + chr5_2:24668317-24668336 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 24666309 24672100 24666309 ID=Msa0764570;Name=Msa0764570
chr5_2 mRNA 24666309 24672100 24666309 ID=Msa0764570-mRNA-1;Parent=Msa0764570;Name=Msa0764570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=352|1|1|1|0.85|0.87|8|316|501
chr5_2 exon 24666309 24666654 24666309 ID=Msa0764570-mRNA-1:exon:9996;Parent=Msa0764570-mRNA-1
chr5_2 exon 24667940 24668044 24667940 ID=Msa0764570-mRNA-1:exon:9995;Parent=Msa0764570-mRNA-1
chr5_2 exon 24668914 24668985 24668914 ID=Msa0764570-mRNA-1:exon:9994;Parent=Msa0764570-mRNA-1
chr5_2 exon 24669080 24669173 24669080 ID=Msa0764570-mRNA-1:exon:9993;Parent=Msa0764570-mRNA-1
chr5_2 exon 24670022 24670086 24670022 ID=Msa0764570-mRNA-1:exon:9992;Parent=Msa0764570-mRNA-1
chr5_2 exon 24670222 24670653 24670222 ID=Msa0764570-mRNA-1:exon:9991;Parent=Msa0764570-mRNA-1
chr5_2 exon 24670747 24671454 24670747 ID=Msa0764570-mRNA-1:exon:9990;Parent=Msa0764570-mRNA-1
chr5_2 exon 24671749 24672100 24671749 ID=Msa0764570-mRNA-1:exon:9989;Parent=Msa0764570-mRNA-1
chr5_2 five_prime_UTR 24671749 24672100 24671749 ID=Msa0764570-mRNA-1:five_prime_utr;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24670747 24671454 24670747 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24670222 24670653 24670222 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24670022 24670086 24670022 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24669080 24669173 24669080 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24668914 24668985 24668914 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24667940 24668044 24667940 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 CDS 24666625 24666654 24666625 ID=Msa0764570-mRNA-1:cds;Parent=Msa0764570-mRNA-1
chr5_2 three_prime_UTR 24666309 24666624 24666309 ID=Msa0764570-mRNA-1:three_prime_utr;Parent=Msa0764570-mRNA-1
Gene Sequence

>Msa0764570

ATGGGAGAGACAACAGCATCAAATTCTGCTTTGCAAGTGTCTGTTTCTTTTGGTAGATTTGATAATGATTCACTGTCATGGGAGAGATGGTCTTCATTCTCTCCAAATAAGTATTTGGAAGAAGTTGAGAAGTGTGCTACACCTGGATCAGTAGCACAGAAGAAAGCTTACTTTGAAGCTCATTACAAGAAGATTGCGGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGGAGATGGAGAGGGAGAGGGATTCCTTCAGATCAGAAGAAAATAATGGTATAGATCTGAGCGGTAATGGTAACGGTAACGGTAACAGTAACGCCTGTGAGACTGATTCGGAATTCGGTATTTCCAACACTCAAGGTAGTTGTACCGAGGAATGCGATAAGCAAGAAATTGAAATCAGCCTGGTTGGTGAAATCGGCAGGAGTCATGCGGATGATTTGAAGGAGGAGGAGGAAGTTGCGGTTTCGGTAGATTACCAAAGTTCATCAGTTGAGGTGGAGAATAAAGAGGTGGAAAGTGGATCACATGGTTCGTACAAGATAGACGAACCTGAAAAAGACGTGTGCATAAAACTAGAAGAAATTCTTGACGTTGAAGCTGAAGATGTGAAGGAAATTTCTCATGTTGTGTACAAAGAGACAGAAAAGGCTTCACAAGTTGAAGAAAAAGATGTGAAATTGGATCATCCAAAGAAATCTAAGGTTATCCCTGTGAATAGGGAAAATAATGCAGCCAAAACAAAAAAGAAACCAGTGGCAGCAAAACCTAAGGCATCTCAAATTTCGACACCGAAAAGTTCAAAGCCTACATCAGCTCCAACTAAAACATTGGCATCTGCCGCTTCAACTAAAAAGGGAAATCCGCAGTCCTTACCTAGGAGGCAAGTTACTTCTAGTGTGGAGAACAAAAAAGTCGCGACCAGATCTTTGCACATGTCTATGAGCTTAGGTCCAAGTAAGCCTGATCCAGTTCCTCATACTACTGAACCAGTTCCTCGTACTATGAGGAAATCTCTCATTATGGATAGTATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACTTTCCAGAAGAATTTTAACCAGCCAAAAACTTCCGTTGAAGAAGACAGATCTTCGGTAAAACAGCAGGCTCCTTCAAGGGGGACTGCGTCAAAGGTTCCAACTTCTTCAACTTTGCGGAAAGAAAATGGAAGGCCTGCTACCGTTGAGAGGATGGAGAAAAGAAGTGGAAGTGTTGTACGAACTTTGGCCCCGAAAAGTGACATTAAATCAGAGAAAGGGAAAGCGTCCTCAAGAAAAATAGAGGAAAAACCTAATACAAAAGTGGTAGAAAGAACGCGTCTCCAAACAAAATTGAAGGAGGAAAAAGAAGCAGAAATGAAAAAGCTAAAGAATGATTTCAAGGCCACACCCCTACCAACTTCTTATCGTGGTCAAAAAGTATCAAAAAGTCGCGCAGAAAAGGGAGATGCTAAGACTGAGAGCCGTCGATAG

Protein sequence

>Msa0764570

MGETTASNSALQVSVSFGRFDNDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKEMERERDSFRSEENNGIDLSGNGNGNGNSNACETDSEFGISNTQGSCTEECDKQEIEISLVGEIGRSHADDLKEEEEVAVSVDYQSSSVEVENKEVESGSHGSYKIDEPEKDVCIKLEEILDVEAEDVKEISHVVYKETEKASQVEEKDVKLDHPKKSKVIPVNRENNAAKTKKKPVAAKPKASQISTPKSSKPTSAPTKTLASAASTKKGNPQSLPRRQVTSSVENKKVATRSLHMSMSLGPSKPDPVPHTTEPVPRTMRKSLIMDSMGDKDIVKRAFKTFQKNFNQPKTSVEEDRSSVKQQAPSRGTASKVPTSSTLRKENGRPATVERMEKRSGSVVRTLAPKSDIKSEKGKASSRKIEEKPNTKVVERTRLQTKLKEEKEAEMKKLKNDFKATPLPTSYRGQKVSKSRAEKGDAKTESRR*