Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102150 | KEH42661.1 | 59.155 | 71 | 23 | 2 | 1 | 71 | 1 | 65 | 5.45e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102150 | sp|P16577|UBC4_WHEAT | 51.389 | 72 | 27 | 3 | 1 | 71 | 16 | 80 | 1.42e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102150 | A0A072VM04 | 59.155 | 71 | 23 | 2 | 1 | 71 | 1 | 65 | 2.60e-15 | 73.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1102150 | 0.823586 | 1.278891e-53 | -8.615850e-47 |
| Msa0608620 | Msa1102150 | 0.800592 | 1.341028e-48 | -8.615850e-47 |
| Msa0648880 | Msa1102150 | 0.817994 | 2.470671e-52 | -8.615850e-47 |
| Msa0657610 | Msa1102150 | 0.801884 | 7.293419e-49 | -8.615850e-47 |
| Msa0658570 | Msa1102150 | 0.805487 | 1.303658e-49 | -8.615850e-47 |
| Msa0663240 | Msa1102150 | 0.811288 | 7.545257e-51 | -8.615850e-47 |
| Msa0672690 | Msa1102150 | 0.811041 | 8.535086e-51 | -8.615850e-47 |
| Msa0688480 | Msa1102150 | 0.804511 | 2.085420e-49 | -8.615850e-47 |
| Msa0691380 | Msa1102150 | 0.819512 | 1.117098e-52 | -8.615850e-47 |
| Msa0692230 | Msa1102150 | 0.802746 | 4.847417e-49 | -8.615850e-47 |
| Msa0701900 | Msa1102150 | 0.805228 | 1.477031e-49 | -8.615850e-47 |
| Msa0725220 | Msa1102150 | 0.804548 | 2.048727e-49 | -8.615850e-47 |
| Msa0812990 | Msa1102150 | 0.803611 | 3.210308e-49 | -8.615850e-47 |
| Msa0832370 | Msa1102150 | 0.803308 | 3.708472e-49 | -8.615850e-47 |
| Msa0157290 | Msa1102150 | 0.823296 | 1.494735e-53 | -8.615850e-47 |
| Msa0226890 | Msa1102150 | 0.830536 | 2.778760e-55 | -8.615850e-47 |
| Msa0398710 | Msa1102150 | 0.803268 | 3.780348e-49 | -8.615850e-47 |
| Msa0466390 | Msa1102150 | 0.808462 | 3.061448e-50 | -8.615850e-47 |
| Msa1014540 | Msa1102150 | 0.814826 | 1.263970e-51 | -8.615850e-47 |
| Msa1036390 | Msa1102150 | 0.803097 | 4.100532e-49 | -8.615850e-47 |
| Msa1044420 | Msa1102150 | 0.805855 | 1.091401e-49 | -8.615850e-47 |
| Msa1075220 | Msa1102150 | -0.816798 | 4.593441e-52 | -8.615850e-47 |
| Msa1082500 | Msa1102150 | 0.809416 | 1.913026e-50 | -8.615850e-47 |
| Msa1102140 | Msa1102150 | 0.848097 | 7.612359e-60 | -8.615850e-47 |
| Msa1102150 | Msa1116130 | -0.818338 | 2.064717e-52 | -8.615850e-47 |
| Msa1102150 | Msa1139000 | -0.806053 | 9.912658e-50 | -8.615850e-47 |
| Msa1102150 | Msa1162550 | -0.818532 | 1.865874e-52 | -8.615850e-47 |
| Msa1102150 | Msa1189430 | 0.802318 | 5.939208e-49 | -8.615850e-47 |
| Msa1102150 | Msa1194920 | 0.812614 | 3.880483e-51 | -8.615850e-47 |
| Msa1102150 | Msa1199220 | 0.809798 | 1.583648e-50 | -8.615850e-47 |
| Msa1102150 | Msa1203250 | 0.800599 | 1.336125e-48 | -8.615850e-47 |
| Msa1102150 | Msa1222970 | 0.810902 | 9.148754e-51 | -8.615850e-47 |
| Msa1102150 | Msa1228210 | 0.812732 | 3.655953e-51 | -8.615850e-47 |
| Msa1102150 | Msa1233890 | 0.807178 | 5.739441e-50 | -8.615850e-47 |
| Msa1102150 | Msa1242220 | 0.805397 | 1.361478e-49 | -8.615850e-47 |
| Msa1102150 | Msa1271300 | 0.809459 | 1.872887e-50 | -8.615850e-47 |
| Msa1102150 | Msa1283860 | 0.847943 | 8.396704e-60 | -8.615850e-47 |
| Msa1102150 | Msa1308380 | 0.802208 | 6.257357e-49 | -8.615850e-47 |
| Msa1102150 | Msa1308640 | 0.804946 | 1.692131e-49 | -8.615850e-47 |
| Msa1102150 | Msa1322890 | 0.806657 | 7.395790e-50 | -8.615850e-47 |
| Msa1102150 | Msa1367080 | 0.810941 | 8.973081e-51 | -8.615850e-47 |
| Msa1102150 | Msa1376890 | 0.802724 | 4.898307e-49 | -8.615850e-47 |
| Msa1102150 | Msa1384350 | 0.804655 | 1.946402e-49 | -8.615850e-47 |
| Msa1102150 | Msa1423880 | 0.801034 | 1.089298e-48 | -8.615850e-47 |
| Msa1102150 | Msa1451620 | -0.804002 | 2.662604e-49 | -8.615850e-47 |
| Msa1102150 | Msa1454120 | 0.825751 | 3.950409e-54 | -8.615850e-47 |
| Msa1102150 | Msa1464940 | 0.812683 | 3.747606e-51 | -8.615850e-47 |
| Msa0243100 | Msa1102150 | 0.811573 | 6.543507e-51 | -8.615850e-47 |
| Msa0321860 | Msa1102150 | 0.803008 | 4.279124e-49 | -8.615850e-47 |
| Msa0500360 | Msa1102150 | 0.809994 | 1.436937e-50 | -8.615850e-47 |
| Msa0555020 | Msa1102150 | 0.800709 | 1.268880e-48 | -8.615850e-47 |
| Msa0581760 | Msa1102150 | 0.805081 | 1.585597e-49 | -8.615850e-47 |
| Msa0585230 | Msa1102150 | 0.806192 | 9.268531e-50 | -8.615850e-47 |
| Msa0597330 | Msa1102150 | 0.801798 | 7.597994e-49 | -8.615850e-47 |
| Msa0843260 | Msa1102150 | 0.804832 | 1.787850e-49 | -8.615850e-47 |
| Msa0853540 | Msa1102150 | 0.800271 | 1.558780e-48 | -8.615850e-47 |
| Msa0880140 | Msa1102150 | 0.821750 | 3.419748e-53 | -8.615850e-47 |
| Msa0909120 | Msa1102150 | 0.802869 | 4.570631e-49 | -8.615850e-47 |
| Msa0931520 | Msa1102150 | 0.800761 | 1.238698e-48 | -8.615850e-47 |
| Msa0976670 | Msa1102150 | 0.804485 | 2.111562e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102150 | MtrunA17_Chr1g0186291 | 55.556 | 72 | 27 | 3 | 1 | 71 | 1 | 68 | 3.68e-15 | 65.1 |
| Msa1102150 | MtrunA17_Chr8g0387131 | 51.389 | 72 | 27 | 3 | 1 | 71 | 16 | 80 | 1.78e-14 | 63.9 |
| Msa1102150 | MtrunA17_Chr8g0348701 | 50.000 | 72 | 28 | 3 | 1 | 71 | 16 | 80 | 4.86e-14 | 63.2 |
| Msa1102150 | MtrunA17_Chr8g0387171 | 50.685 | 73 | 26 | 4 | 1 | 71 | 6 | 70 | 1.51e-13 | 59.3 |
| Msa1102150 | MtrunA17_Chr4g0059291 | 48.611 | 72 | 29 | 3 | 1 | 71 | 16 | 80 | 5.00e-13 | 60.5 |
| Msa1102150 | MtrunA17_Chr8g0387151 | 45.833 | 72 | 31 | 3 | 1 | 71 | 7 | 71 | 8.47e-12 | 54.7 |
| Msa1102150 | MtrunA17_Chr6g0479281 | 42.029 | 69 | 33 | 2 | 4 | 71 | 9 | 71 | 8.22e-11 | 52.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102150 | AT1G63800.2 | 50.000 | 72 | 28 | 3 | 1 | 71 | 1 | 65 | 6.25e-14 | 62.8 |
| Msa1102150 | AT1G63800.1 | 50.000 | 72 | 28 | 3 | 1 | 71 | 16 | 80 | 7.54e-14 | 62.8 |
| Msa1102150 | AT5G41340.1 | 49.315 | 73 | 27 | 4 | 1 | 71 | 16 | 80 | 3.35e-12 | 58.5 |
Find 12 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATCAAGAAGGTATA+TGG | 0.324797 | 7_3:-34329513 | Msa1102150:CDS |
| ACTCACATTTCATCAACATT+AGG | 0.371368 | 7_3:+34329405 | None:intergenic |
| TTCCATATACCTTCTTGATA+AGG | 0.387527 | 7_3:+34329511 | None:intergenic |
| ACTTGTAAGTCTCCTTCAAT+TGG | 0.413979 | 7_3:-34329450 | Msa1102150:CDS |
| TTGTTGACAAAACCAATTGA+AGG | 0.473074 | 7_3:+34329438 | None:intergenic |
| AAACTTACTGTGTATAACTT+AGG | 0.490431 | 7_3:+34331044 | None:intergenic |
| CAGGATGATGAGTGATTACA+TGG | 0.544614 | 7_3:-34331120 | None:intergenic |
| AGGTATATGGAAGACAAGAG+TGG | 0.546863 | 7_3:-34329500 | Msa1102150:CDS |
| ATCGCAGCTCCTTATCAAGA+AGG | 0.573700 | 7_3:-34329520 | Msa1102150:intron |
| AAGTTACAAGAATAAACATC+AGG | 0.575888 | 7_3:+34329469 | None:intergenic |
| CTGTGTATAACTTAGGTCGA+TGG | 0.579125 | 7_3:+34331051 | None:intergenic |
| TATATGGAAGACAAGAGTGG+AGG | 0.671967 | 7_3:-34329497 | Msa1102150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATGATGTAATTAATGT+TGG | - | chr7_3:34330491-34330510 | Msa1102150:intron | 15.0% |
| !!! | AATTTTTTGACATCAAATTT+TGG | - | chr7_3:34330774-34330793 | Msa1102150:intron | 15.0% |
| !! | TATAATGATGTAATTAATGT+TGG | - | chr7_3:34330491-34330510 | Msa1102150:intron | 15.0% |
| !!! | AATTTTTTGACATCAAATTT+TGG | - | chr7_3:34330774-34330793 | Msa1102150:intron | 15.0% |
| !! | TATTGGGTTTGTATTAATAT+TGG | - | chr7_3:34329882-34329901 | Msa1102150:intron | 20.0% |
| !! | ATTGGGTTTGTATTAATATT+GGG | - | chr7_3:34329883-34329902 | Msa1102150:intron | 20.0% |
| !!! | AACCTTAATGTTTTCTTTTT+GGG | - | chr7_3:34329912-34329931 | Msa1102150:intron | 20.0% |
| !!! | CAATAATTTTGAGACAAAAA+GGG | + | chr7_3:34330554-34330573 | None:intergenic | 20.0% |
| !!! | TCAATAATTTTGAGACAAAA+AGG | + | chr7_3:34330555-34330574 | None:intergenic | 20.0% |
| !! | TTGTCTCAAAATTATTGATA+TGG | - | chr7_3:34330557-34330576 | Msa1102150:intron | 20.0% |
| !! | TAAAGGAAAAACATTTCAAT+TGG | + | chr7_3:34330616-34330635 | None:intergenic | 20.0% |
| !! | TATACAATCTATAGTACTAA+AGG | + | chr7_3:34330633-34330652 | None:intergenic | 20.0% |
| !! | TATATGTTTGAATTCAATGT+GGG | - | chr7_3:34330649-34330668 | Msa1102150:intron | 20.0% |
| !! | TATTGGGTTTGTATTAATAT+TGG | - | chr7_3:34329882-34329901 | Msa1102150:intron | 20.0% |
| !! | ATTGGGTTTGTATTAATATT+GGG | - | chr7_3:34329883-34329902 | Msa1102150:intron | 20.0% |
| !!! | AACCTTAATGTTTTCTTTTT+GGG | - | chr7_3:34329912-34329931 | Msa1102150:intron | 20.0% |
| !!! | CAATAATTTTGAGACAAAAA+GGG | + | chr7_3:34330554-34330573 | None:intergenic | 20.0% |
| !!! | TCAATAATTTTGAGACAAAA+AGG | + | chr7_3:34330555-34330574 | None:intergenic | 20.0% |
| !! | TTGTCTCAAAATTATTGATA+TGG | - | chr7_3:34330557-34330576 | Msa1102150:intron | 20.0% |
| !! | TAAAGGAAAAACATTTCAAT+TGG | + | chr7_3:34330616-34330635 | None:intergenic | 20.0% |
| !! | TATACAATCTATAGTACTAA+AGG | + | chr7_3:34330633-34330652 | None:intergenic | 20.0% |
| !! | TATATGTTTGAATTCAATGT+GGG | - | chr7_3:34330649-34330668 | Msa1102150:intron | 20.0% |
| ! | AAACTTACTGTGTATAACTT+AGG | + | chr7_3:34329482-34329501 | None:intergenic | 25.0% |
| ! | TTCATTGATGCAACAAAAAA+GGG | + | chr7_3:34329534-34329553 | None:intergenic | 25.0% |
| ! | ATTCATTGATGCAACAAAAA+AGG | + | chr7_3:34329535-34329554 | None:intergenic | 25.0% |
| ! | ATAAGACATTCATGTTCTAT+TGG | + | chr7_3:34329797-34329816 | None:intergenic | 25.0% |
| !! | TTTTGTATGCTATAAGCTAT+TGG | - | chr7_3:34329865-34329884 | Msa1102150:intron | 25.0% |
| ! | TTTGTATGCTATAAGCTATT+GGG | - | chr7_3:34329866-34329885 | Msa1102150:intron | 25.0% |
| ! | TTTGTATTAATATTGGGATC+TGG | - | chr7_3:34329889-34329908 | Msa1102150:intron | 25.0% |
| !! | GAACCTTAATGTTTTCTTTT+TGG | - | chr7_3:34329911-34329930 | Msa1102150:intron | 25.0% |
| ! | AACCCAAAAAGAAAACATTA+AGG | + | chr7_3:34329917-34329936 | None:intergenic | 25.0% |
| !!! | TTAATGTTTTCTTTTTGGGT+TGG | - | chr7_3:34329916-34329935 | Msa1102150:intron | 25.0% |
| !!! | TAATGTTTTCTTTTTGGGTT+GGG | - | chr7_3:34329917-34329936 | Msa1102150:intron | 25.0% |
| ! | TTTGACAAATGAATCAATGT+TGG | + | chr7_3:34330000-34330019 | None:intergenic | 25.0% |
| ! | ATGATGACATACACAAATAA+TGG | - | chr7_3:34330450-34330469 | Msa1102150:intron | 25.0% |
| ! | ACATCATTATAAGCAACATA+AGG | + | chr7_3:34330482-34330501 | None:intergenic | 25.0% |
| ! | AATGTTGGATATGATATTGA+TGG | - | chr7_3:34330506-34330525 | Msa1102150:intron | 25.0% |
| ! | GTATATGTTTGAATTCAATG+TGG | - | chr7_3:34330648-34330667 | Msa1102150:intron | 25.0% |
| ! | ATTAACACAATTGTAGAAGT+GGG | - | chr7_3:34330928-34330947 | Msa1102150:intron | 25.0% |
| ! | AAGTTACAAGAATAAACATC+AGG | + | chr7_3:34331057-34331076 | None:intergenic | 25.0% |
| ! | AAACTTACTGTGTATAACTT+AGG | + | chr7_3:34329482-34329501 | None:intergenic | 25.0% |
| ! | TTCATTGATGCAACAAAAAA+GGG | + | chr7_3:34329534-34329553 | None:intergenic | 25.0% |
| ! | ATTCATTGATGCAACAAAAA+AGG | + | chr7_3:34329535-34329554 | None:intergenic | 25.0% |
| ! | ATAAGACATTCATGTTCTAT+TGG | + | chr7_3:34329797-34329816 | None:intergenic | 25.0% |
| !! | TTTTGTATGCTATAAGCTAT+TGG | - | chr7_3:34329865-34329884 | Msa1102150:intron | 25.0% |
| ! | TTTGTATGCTATAAGCTATT+GGG | - | chr7_3:34329866-34329885 | Msa1102150:intron | 25.0% |
| ! | TTTGTATTAATATTGGGATC+TGG | - | chr7_3:34329889-34329908 | Msa1102150:intron | 25.0% |
| !! | GAACCTTAATGTTTTCTTTT+TGG | - | chr7_3:34329911-34329930 | Msa1102150:intron | 25.0% |
| ! | AACCCAAAAAGAAAACATTA+AGG | + | chr7_3:34329917-34329936 | None:intergenic | 25.0% |
| !!! | TTAATGTTTTCTTTTTGGGT+TGG | - | chr7_3:34329916-34329935 | Msa1102150:intron | 25.0% |
| !!! | TAATGTTTTCTTTTTGGGTT+GGG | - | chr7_3:34329917-34329936 | Msa1102150:intron | 25.0% |
| ! | TTTGACAAATGAATCAATGT+TGG | + | chr7_3:34330000-34330019 | None:intergenic | 25.0% |
| ! | ATGATGACATACACAAATAA+TGG | - | chr7_3:34330450-34330469 | Msa1102150:intron | 25.0% |
| ! | ACATCATTATAAGCAACATA+AGG | + | chr7_3:34330482-34330501 | None:intergenic | 25.0% |
| ! | AATGTTGGATATGATATTGA+TGG | - | chr7_3:34330506-34330525 | Msa1102150:intron | 25.0% |
| ! | GTATATGTTTGAATTCAATG+TGG | - | chr7_3:34330648-34330667 | Msa1102150:intron | 25.0% |
| ! | ATTAACACAATTGTAGAAGT+GGG | - | chr7_3:34330928-34330947 | Msa1102150:intron | 25.0% |
| ! | AAGTTACAAGAATAAACATC+AGG | + | chr7_3:34331057-34331076 | None:intergenic | 25.0% |
| TTCAACAAAAAACTGTTGCA+TGG | + | chr7_3:34329450-34329469 | None:intergenic | 30.0% | |
| TCATTGATGCAACAAAAAAG+GGG | + | chr7_3:34329533-34329552 | None:intergenic | 30.0% | |
| ! | CTTTTTGCGTATTATTTGTG+AGG | + | chr7_3:34329723-34329742 | None:intergenic | 30.0% |
| ! | TGTTGGTTGCCATAAATTAT+AGG | + | chr7_3:34329983-34330002 | None:intergenic | 30.0% |
| AGAGGTAGATGATATATCTT+TGG | + | chr7_3:34330128-34330147 | None:intergenic | 30.0% | |
| AATCATGAAGAGAGATTTAG+AGG | + | chr7_3:34330146-34330165 | None:intergenic | 30.0% | |
| GGGAGATCAAGAAAAAATAT+AGG | + | chr7_3:34330172-34330191 | None:intergenic | 30.0% | |
| !! | TTCTTGCTTCATTTTTCGTT+TGG | - | chr7_3:34330322-34330341 | Msa1102150:intron | 30.0% |
| !! | TTTACCCATTTTTCTCAATG+AGG | - | chr7_3:34330707-34330726 | Msa1102150:intron | 30.0% |
| !! | TTACCCATTTTTCTCAATGA+GGG | - | chr7_3:34330708-34330727 | Msa1102150:intron | 30.0% |
| !!! | TCAAATTTTGGTGTCGAATA+CGG | - | chr7_3:34330786-34330805 | Msa1102150:intron | 30.0% |
| GATTAACACAATTGTAGAAG+TGG | - | chr7_3:34330927-34330946 | Msa1102150:intron | 30.0% | |
| TTCCATATACCTTCTTGATA+AGG | + | chr7_3:34331015-34331034 | None:intergenic | 30.0% | |
| TTGTTGACAAAACCAATTGA+AGG | + | chr7_3:34331088-34331107 | None:intergenic | 30.0% | |
| TTCAACAAAAAACTGTTGCA+TGG | + | chr7_3:34329450-34329469 | None:intergenic | 30.0% | |
| TCATTGATGCAACAAAAAAG+GGG | + | chr7_3:34329533-34329552 | None:intergenic | 30.0% | |
| ! | CTTTTTGCGTATTATTTGTG+AGG | + | chr7_3:34329723-34329742 | None:intergenic | 30.0% |
| ! | TGTTGGTTGCCATAAATTAT+AGG | + | chr7_3:34329983-34330002 | None:intergenic | 30.0% |
| AGAGGTAGATGATATATCTT+TGG | + | chr7_3:34330128-34330147 | None:intergenic | 30.0% | |
| AATCATGAAGAGAGATTTAG+AGG | + | chr7_3:34330146-34330165 | None:intergenic | 30.0% | |
| GGGAGATCAAGAAAAAATAT+AGG | + | chr7_3:34330172-34330191 | None:intergenic | 30.0% | |
| !! | TTCTTGCTTCATTTTTCGTT+TGG | - | chr7_3:34330322-34330341 | Msa1102150:intron | 30.0% |
| !! | TTTACCCATTTTTCTCAATG+AGG | - | chr7_3:34330707-34330726 | Msa1102150:intron | 30.0% |
| !! | TTACCCATTTTTCTCAATGA+GGG | - | chr7_3:34330708-34330727 | Msa1102150:intron | 30.0% |
| !!! | TCAAATTTTGGTGTCGAATA+CGG | - | chr7_3:34330786-34330805 | Msa1102150:intron | 30.0% |
| GATTAACACAATTGTAGAAG+TGG | - | chr7_3:34330927-34330946 | Msa1102150:intron | 30.0% | |
| TTCCATATACCTTCTTGATA+AGG | + | chr7_3:34331015-34331034 | None:intergenic | 30.0% | |
| TTGTTGACAAAACCAATTGA+AGG | + | chr7_3:34331088-34331107 | None:intergenic | 30.0% | |
| GGGAAAAAATTGATACAACG+GGG | + | chr7_3:34329512-34329531 | None:intergenic | 35.0% | |
| GGGGAAAAAATTGATACAAC+GGG | + | chr7_3:34329513-34329532 | None:intergenic | 35.0% | |
| GGGGGAAAAAATTGATACAA+CGG | + | chr7_3:34329514-34329533 | None:intergenic | 35.0% | |
| CATTGATGCAACAAAAAAGG+GGG | + | chr7_3:34329532-34329551 | None:intergenic | 35.0% | |
| ! | TTTGCCTATTTTCTTCAACG+AGG | - | chr7_3:34329556-34329575 | Msa1102150:intron | 35.0% |
| TCATCCTCGTTGAAGAAAAT+AGG | + | chr7_3:34329563-34329582 | None:intergenic | 35.0% | |
| AACGAGGATGAATTGCATTA+GGG | - | chr7_3:34329572-34329591 | Msa1102150:intron | 35.0% | |
| TGCGTATTATTTGTGAGGAT+GGG | + | chr7_3:34329718-34329737 | None:intergenic | 35.0% | |
| TTGCGTATTATTTGTGAGGA+TGG | + | chr7_3:34329719-34329738 | None:intergenic | 35.0% | |
| TTCAGCATGAGATCATTCAT+GGG | + | chr7_3:34329773-34329792 | None:intergenic | 35.0% | |
| TTTCAGCATGAGATCATTCA+TGG | + | chr7_3:34329774-34329793 | None:intergenic | 35.0% | |
| ACAAAACTACGATAAGTGTG+TGG | + | chr7_3:34329851-34329870 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTTGGGTTGGGAA+TGG | - | chr7_3:34329922-34329941 | Msa1102150:intron | 35.0% |
| !!! | TTTCTTTTTGGGTTGGGAAT+GGG | - | chr7_3:34329923-34329942 | Msa1102150:intron | 35.0% |
| GTAGACCTGCCTATAATTTA+TGG | - | chr7_3:34329971-34329990 | Msa1102150:intron | 35.0% | |
| ATTGTGAAGAGTAGACTTAG+AGG | + | chr7_3:34330201-34330220 | None:intergenic | 35.0% | |
| GTTCATTGAAGAGAGAATCA+GGG | + | chr7_3:34330255-34330274 | None:intergenic | 35.0% | |
| TGTTCATTGAAGAGAGAATC+AGG | + | chr7_3:34330256-34330275 | None:intergenic | 35.0% | |
| ! | ATAACCCTTTCTCAGTTTTG+TGG | - | chr7_3:34330281-34330300 | Msa1102150:intron | 35.0% |
| ATAAGCAATACAGTGCAAAC+AGG | + | chr7_3:34330368-34330387 | None:intergenic | 35.0% | |
| TCACCCTCATTGAGAAAAAT+GGG | + | chr7_3:34330714-34330733 | None:intergenic | 35.0% | |
| TTCACCCTCATTGAGAAAAA+TGG | + | chr7_3:34330715-34330734 | None:intergenic | 35.0% | |
| !!! | CAAATTTTGGTGTCGAATAC+GGG | - | chr7_3:34330787-34330806 | Msa1102150:intron | 35.0% |
| TGTGTGTTAGTTGTTGTAGA+AGG | - | chr7_3:34330839-34330858 | Msa1102150:intron | 35.0% | |
| !! | TCAGTTTCACTCGCTTTTAT+TGG | - | chr7_3:34330975-34330994 | Msa1102150:intron | 35.0% |
| !! | CAGTTTCACTCGCTTTTATT+GGG | - | chr7_3:34330976-34330995 | Msa1102150:intron | 35.0% |
| ! | CTCCTTATCAAGAAGGTATA+TGG | - | chr7_3:34331010-34331029 | Msa1102150:intron | 35.0% |
| ACTTGTAAGTCTCCTTCAAT+TGG | - | chr7_3:34331073-34331092 | Msa1102150:CDS | 35.0% | |
| GGGAAAAAATTGATACAACG+GGG | + | chr7_3:34329512-34329531 | None:intergenic | 35.0% | |
| GGGGAAAAAATTGATACAAC+GGG | + | chr7_3:34329513-34329532 | None:intergenic | 35.0% | |
| GGGGGAAAAAATTGATACAA+CGG | + | chr7_3:34329514-34329533 | None:intergenic | 35.0% | |
| CATTGATGCAACAAAAAAGG+GGG | + | chr7_3:34329532-34329551 | None:intergenic | 35.0% | |
| ! | TTTGCCTATTTTCTTCAACG+AGG | - | chr7_3:34329556-34329575 | Msa1102150:intron | 35.0% |
| TCATCCTCGTTGAAGAAAAT+AGG | + | chr7_3:34329563-34329582 | None:intergenic | 35.0% | |
| AACGAGGATGAATTGCATTA+GGG | - | chr7_3:34329572-34329591 | Msa1102150:intron | 35.0% | |
| TGCGTATTATTTGTGAGGAT+GGG | + | chr7_3:34329718-34329737 | None:intergenic | 35.0% | |
| TTGCGTATTATTTGTGAGGA+TGG | + | chr7_3:34329719-34329738 | None:intergenic | 35.0% | |
| TTCAGCATGAGATCATTCAT+GGG | + | chr7_3:34329773-34329792 | None:intergenic | 35.0% | |
| TTTCAGCATGAGATCATTCA+TGG | + | chr7_3:34329774-34329793 | None:intergenic | 35.0% | |
| ACAAAACTACGATAAGTGTG+TGG | + | chr7_3:34329851-34329870 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTTGGGTTGGGAA+TGG | - | chr7_3:34329922-34329941 | Msa1102150:intron | 35.0% |
| !!! | TTTCTTTTTGGGTTGGGAAT+GGG | - | chr7_3:34329923-34329942 | Msa1102150:intron | 35.0% |
| GTAGACCTGCCTATAATTTA+TGG | - | chr7_3:34329971-34329990 | Msa1102150:intron | 35.0% | |
| ATTGTGAAGAGTAGACTTAG+AGG | + | chr7_3:34330201-34330220 | None:intergenic | 35.0% | |
| GTTCATTGAAGAGAGAATCA+GGG | + | chr7_3:34330255-34330274 | None:intergenic | 35.0% | |
| TGTTCATTGAAGAGAGAATC+AGG | + | chr7_3:34330256-34330275 | None:intergenic | 35.0% | |
| ! | ATAACCCTTTCTCAGTTTTG+TGG | - | chr7_3:34330281-34330300 | Msa1102150:intron | 35.0% |
| ATAAGCAATACAGTGCAAAC+AGG | + | chr7_3:34330368-34330387 | None:intergenic | 35.0% | |
| TCACCCTCATTGAGAAAAAT+GGG | + | chr7_3:34330714-34330733 | None:intergenic | 35.0% | |
| TTCACCCTCATTGAGAAAAA+TGG | + | chr7_3:34330715-34330734 | None:intergenic | 35.0% | |
| !!! | CAAATTTTGGTGTCGAATAC+GGG | - | chr7_3:34330787-34330806 | Msa1102150:intron | 35.0% |
| TGTGTGTTAGTTGTTGTAGA+AGG | - | chr7_3:34330839-34330858 | Msa1102150:intron | 35.0% | |
| !! | TCAGTTTCACTCGCTTTTAT+TGG | - | chr7_3:34330975-34330994 | Msa1102150:intron | 35.0% |
| !! | CAGTTTCACTCGCTTTTATT+GGG | - | chr7_3:34330976-34330995 | Msa1102150:intron | 35.0% |
| ! | CTCCTTATCAAGAAGGTATA+TGG | - | chr7_3:34331010-34331029 | Msa1102150:intron | 35.0% |
| ACTTGTAAGTCTCCTTCAAT+TGG | - | chr7_3:34331073-34331092 | Msa1102150:CDS | 35.0% | |
| CTGTGTATAACTTAGGTCGA+TGG | + | chr7_3:34329475-34329494 | None:intergenic | 40.0% | |
| CAACGAGGATGAATTGCATT+AGG | - | chr7_3:34329571-34329590 | Msa1102150:intron | 40.0% | |
| ATTGCATTAGGGTCTATGAC+TGG | - | chr7_3:34329583-34329602 | Msa1102150:intron | 40.0% | |
| ! | GTCTATGACTGGTTAACTCT+AGG | - | chr7_3:34329594-34329613 | Msa1102150:intron | 40.0% |
| ! | TGGATGCTACTTACATGTGT+TGG | + | chr7_3:34329831-34329850 | None:intergenic | 40.0% |
| GGTTGCCATAAATTATAGGC+AGG | + | chr7_3:34329979-34329998 | None:intergenic | 40.0% | |
| ! | CAACCAGTCTTTTTCCTACT+AGG | - | chr7_3:34330050-34330069 | Msa1102150:intron | 40.0% |
| ! | CAGTCTTTTTCCTACTAGGT+CGG | - | chr7_3:34330054-34330073 | Msa1102150:intron | 40.0% |
| TATAAACGATCCGACCTAGT+AGG | + | chr7_3:34330067-34330086 | None:intergenic | 40.0% | |
| CCTAATACATGACAGGACTA+TGG | + | chr7_3:34330104-34330123 | None:intergenic | 40.0% | |
| CCATAGTCCTGTCATGTATT+AGG | - | chr7_3:34330101-34330120 | Msa1102150:intron | 40.0% | |
| CTTTGGACCTAATACATGAC+AGG | + | chr7_3:34330111-34330130 | None:intergenic | 40.0% | |
| AGTAGACTTAGAGGTAGAGA+GGG | + | chr7_3:34330192-34330211 | None:intergenic | 40.0% | |
| GATGCCACAAAACTGAGAAA+GGG | + | chr7_3:34330288-34330307 | None:intergenic | 40.0% | |
| TGATGCCACAAAACTGAGAA+AGG | + | chr7_3:34330289-34330308 | None:intergenic | 40.0% | |
| CAATGAGGGTGAATTGCATT+AGG | - | chr7_3:34330722-34330741 | Msa1102150:intron | 40.0% | |
| AGGTATATGGAAGACAAGAG+TGG | - | chr7_3:34331023-34331042 | Msa1102150:intron | 40.0% | |
| TATATGGAAGACAAGAGTGG+AGG | - | chr7_3:34331026-34331045 | Msa1102150:intron | 40.0% | |
| CTGTGTATAACTTAGGTCGA+TGG | + | chr7_3:34329475-34329494 | None:intergenic | 40.0% | |
| CAACGAGGATGAATTGCATT+AGG | - | chr7_3:34329571-34329590 | Msa1102150:intron | 40.0% | |
| ATTGCATTAGGGTCTATGAC+TGG | - | chr7_3:34329583-34329602 | Msa1102150:intron | 40.0% | |
| ! | GTCTATGACTGGTTAACTCT+AGG | - | chr7_3:34329594-34329613 | Msa1102150:intron | 40.0% |
| ! | TGGATGCTACTTACATGTGT+TGG | + | chr7_3:34329831-34329850 | None:intergenic | 40.0% |
| GGTTGCCATAAATTATAGGC+AGG | + | chr7_3:34329979-34329998 | None:intergenic | 40.0% | |
| ! | CAACCAGTCTTTTTCCTACT+AGG | - | chr7_3:34330050-34330069 | Msa1102150:intron | 40.0% |
| ! | CAGTCTTTTTCCTACTAGGT+CGG | - | chr7_3:34330054-34330073 | Msa1102150:intron | 40.0% |
| TATAAACGATCCGACCTAGT+AGG | + | chr7_3:34330067-34330086 | None:intergenic | 40.0% | |
| CCTAATACATGACAGGACTA+TGG | + | chr7_3:34330104-34330123 | None:intergenic | 40.0% | |
| CCATAGTCCTGTCATGTATT+AGG | - | chr7_3:34330101-34330120 | Msa1102150:intron | 40.0% | |
| CTTTGGACCTAATACATGAC+AGG | + | chr7_3:34330111-34330130 | None:intergenic | 40.0% | |
| AGTAGACTTAGAGGTAGAGA+GGG | + | chr7_3:34330192-34330211 | None:intergenic | 40.0% | |
| GATGCCACAAAACTGAGAAA+GGG | + | chr7_3:34330288-34330307 | None:intergenic | 40.0% | |
| TGATGCCACAAAACTGAGAA+AGG | + | chr7_3:34330289-34330308 | None:intergenic | 40.0% | |
| CAATGAGGGTGAATTGCATT+AGG | - | chr7_3:34330722-34330741 | Msa1102150:intron | 40.0% | |
| AGGTATATGGAAGACAAGAG+TGG | - | chr7_3:34331023-34331042 | Msa1102150:intron | 40.0% | |
| TATATGGAAGACAAGAGTGG+AGG | - | chr7_3:34331026-34331045 | Msa1102150:intron | 40.0% | |
| ! | CTTACATGTGTTGGCAAGTG+AGG | + | chr7_3:34329822-34329841 | None:intergenic | 45.0% |
| CGACCTAGTAGGAAAAAGAC+TGG | + | chr7_3:34330056-34330075 | None:intergenic | 45.0% | |
| GAGTAGACTTAGAGGTAGAG+AGG | + | chr7_3:34330193-34330212 | None:intergenic | 45.0% | |
| ATCGCAGCTCCTTATCAAGA+AGG | - | chr7_3:34331003-34331022 | Msa1102150:intron | 45.0% | |
| ! | CTTACATGTGTTGGCAAGTG+AGG | + | chr7_3:34329822-34329841 | None:intergenic | 45.0% |
| CGACCTAGTAGGAAAAAGAC+TGG | + | chr7_3:34330056-34330075 | None:intergenic | 45.0% | |
| GAGTAGACTTAGAGGTAGAG+AGG | + | chr7_3:34330193-34330212 | None:intergenic | 45.0% | |
| ATCGCAGCTCCTTATCAAGA+AGG | - | chr7_3:34331003-34331022 | Msa1102150:intron | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 34329407 | 34331138 | 34329407 | ID=Msa1102150;Name=Msa1102150 |
| chr7_3 | mRNA | 34329407 | 34331138 | 34329407 | ID=Msa1102150-mRNA-1;Parent=Msa1102150;Name=Msa1102150-mRNA-1;_AED=0.68;_eAED=0.82;_QI=0|0|0|0.5|0|0|2|0|71 |
| chr7_3 | exon | 34331052 | 34331138 | 34331052 | ID=Msa1102150-mRNA-1:exon:7289;Parent=Msa1102150-mRNA-1 |
| chr7_3 | exon | 34329407 | 34329535 | 34329407 | ID=Msa1102150-mRNA-1:exon:7288;Parent=Msa1102150-mRNA-1 |
| chr7_3 | CDS | 34331052 | 34331138 | 34331052 | ID=Msa1102150-mRNA-1:cds;Parent=Msa1102150-mRNA-1 |
| chr7_3 | CDS | 34329407 | 34329535 | 34329407 | ID=Msa1102150-mRNA-1:cds;Parent=Msa1102150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
