Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469460 | XP_003601958.1 | 89.447 | 199 | 21 | 0 | 1 | 199 | 1 | 199 | 5.75e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469460 | G7J3S4 | 89.447 | 199 | 21 | 0 | 1 | 199 | 1 | 199 | 2.74e-130 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0469460 | 0.844641 | 6.665492e-59 | -8.615850e-47 |
| Msa0014590 | Msa0469460 | 0.809006 | 2.341762e-50 | -8.615850e-47 |
| Msa0027860 | Msa0469460 | 0.826185 | 3.116450e-54 | -8.615850e-47 |
| Msa0075560 | Msa0469460 | 0.810034 | 1.408383e-50 | -8.615850e-47 |
| Msa0123530 | Msa0469460 | 0.803508 | 3.371688e-49 | -8.615850e-47 |
| Msa0150910 | Msa0469460 | 0.802185 | 6.326318e-49 | -8.615850e-47 |
| Msa0150920 | Msa0469460 | 0.806242 | 9.047270e-50 | -8.615850e-47 |
| Msa0168010 | Msa0469460 | 0.814816 | 1.270770e-51 | -8.615850e-47 |
| Msa0177550 | Msa0469460 | 0.803138 | 4.021364e-49 | -8.615850e-47 |
| Msa0190670 | Msa0469460 | 0.825474 | 4.595469e-54 | -8.615850e-47 |
| Msa0194230 | Msa0469460 | 0.818526 | 1.872267e-52 | -8.615850e-47 |
| Msa0195580 | Msa0469460 | 0.800525 | 1.383260e-48 | -8.615850e-47 |
| Msa0197020 | Msa0469460 | 0.828974 | 6.672165e-55 | -8.615850e-47 |
| Msa0207640 | Msa0469460 | 0.851812 | 6.954804e-61 | -8.615850e-47 |
| Msa0209520 | Msa0469460 | 0.802831 | 4.655594e-49 | -8.615850e-47 |
| Msa0366510 | Msa0469460 | 0.818184 | 2.237918e-52 | -8.615850e-47 |
| Msa0374030 | Msa0469460 | 0.884314 | 2.132503e-71 | -8.615850e-47 |
| Msa0374040 | Msa0469460 | 0.855886 | 4.667320e-62 | -8.615850e-47 |
| Msa0396700 | Msa0469460 | 0.839539 | 1.492026e-57 | -8.615850e-47 |
| Msa0396730 | Msa0469460 | 0.811476 | 6.868442e-51 | -8.615850e-47 |
| Msa0414480 | Msa0469460 | 0.841788 | 3.843109e-58 | -8.615850e-47 |
| Msa0423200 | Msa0469460 | 0.813602 | 2.356018e-51 | -8.615850e-47 |
| Msa0423220 | Msa0469460 | 0.816256 | 6.073733e-52 | -8.615850e-47 |
| Msa0444210 | Msa0469460 | 0.806896 | 6.582651e-50 | -8.615850e-47 |
| Msa0444250 | Msa0469460 | 0.804330 | 2.274721e-49 | -8.615850e-47 |
| Msa0464310 | Msa0469460 | 0.816849 | 4.472050e-52 | -8.615850e-47 |
| Msa0469450 | Msa0469460 | 0.909343 | 6.327919e-82 | -8.615850e-47 |
| Msa0469460 | Msa0469480 | 0.850959 | 1.211948e-60 | -8.615850e-47 |
| Msa0469460 | Msa0490060 | 0.819363 | 1.207715e-52 | -8.615850e-47 |
| Msa0469460 | Msa0490100 | 0.802380 | 5.765681e-49 | -8.615850e-47 |
| Msa0469460 | Msa0491780 | 0.813246 | 2.820549e-51 | -8.615850e-47 |
| Msa0469460 | Msa0491800 | 0.840392 | 8.937524e-58 | -8.615850e-47 |
| Msa0469460 | Msa0491830 | 0.826566 | 2.528563e-54 | -8.615850e-47 |
| Msa0469460 | Msa0507600 | 0.801457 | 8.923519e-49 | -8.615850e-47 |
| Msa0469460 | Msa0515130 | 0.867345 | 1.465848e-65 | -8.615850e-47 |
| Msa0469460 | Msa0515150 | 0.829693 | 4.462167e-55 | -8.615850e-47 |
| Msa0469460 | Msa0535570 | 0.852938 | 3.322811e-61 | -8.615850e-47 |
| Msa0469460 | Msa0538530 | 0.805544 | 1.267973e-49 | -8.615850e-47 |
| Msa0469460 | Msa0591490 | 0.854079 | 1.562952e-61 | -8.615850e-47 |
| Msa0469460 | Msa0606600 | 0.800532 | 1.378710e-48 | -8.615850e-47 |
| Msa0469460 | Msa0609460 | 0.810089 | 1.370565e-50 | -8.615850e-47 |
| Msa0469460 | Msa0631700 | 0.850923 | 1.240065e-60 | -8.615850e-47 |
| Msa0469460 | Msa0647300 | 0.802228 | 6.198796e-49 | -8.615850e-47 |
| Msa0469460 | Msa0670360 | 0.843708 | 1.186690e-58 | -8.615850e-47 |
| Msa0469460 | Msa0686830 | 0.802977 | 4.342567e-49 | -8.615850e-47 |
| Msa0469460 | Msa0708680 | 0.831022 | 2.112745e-55 | -8.615850e-47 |
| Msa0469460 | Msa0715250 | 0.810647 | 1.038730e-50 | -8.615850e-47 |
| Msa0469460 | Msa0720870 | 0.833916 | 4.051069e-56 | -8.615850e-47 |
| Msa0469460 | Msa0751960 | 0.810211 | 1.290320e-50 | -8.615850e-47 |
| Msa0469460 | Msa0757220 | 0.807285 | 5.445315e-50 | -8.615850e-47 |
| Msa0469460 | Msa0761420 | 0.830068 | 3.616066e-55 | -8.615850e-47 |
| Msa0469460 | Msa0761950 | 0.811788 | 5.875837e-51 | -8.615850e-47 |
| Msa0469460 | Msa0814160 | 0.813489 | 2.494271e-51 | -8.615850e-47 |
| Msa0469460 | Msa0836750 | 0.806034 | 1.000718e-49 | -8.615850e-47 |
| Msa0469460 | Msa0841670 | 0.816387 | 5.676149e-52 | -8.615850e-47 |
| Msa0469460 | Msa0867080 | 0.811188 | 7.932674e-51 | -8.615850e-47 |
| Msa0469460 | Msa0896920 | 0.814715 | 1.338079e-51 | -8.615850e-47 |
| Msa0469460 | Msa1022490 | 0.883599 | 3.915703e-71 | -8.615850e-47 |
| Msa0469460 | Msa1022510 | 0.890782 | 7.213361e-74 | -8.615850e-47 |
| Msa0469460 | Msa1030320 | 0.810554 | 1.088158e-50 | -8.615850e-47 |
| Msa0469460 | Msa1037310 | 0.801158 | 1.027273e-48 | -8.615850e-47 |
| Msa0469460 | Msa1048350 | 0.807587 | 4.700207e-50 | -8.615850e-47 |
| Msa0469460 | Msa1061670 | 0.805812 | 1.113902e-49 | -8.615850e-47 |
| Msa0469460 | Msa1064940 | 0.837578 | 4.785008e-57 | -8.615850e-47 |
| Msa0469460 | Msa1087370 | 0.818213 | 2.204262e-52 | -8.615850e-47 |
| Msa0469460 | Msa1087380 | 0.805026 | 1.628294e-49 | -8.615850e-47 |
| Msa0469460 | Msa1100330 | 0.814392 | 1.577051e-51 | -8.615850e-47 |
| Msa0469460 | Msa1106680 | 0.861082 | 1.316643e-63 | -8.615850e-47 |
| Msa0469460 | Msa1106960 | 0.811032 | 8.575259e-51 | -8.615850e-47 |
| Msa0469460 | Msa1108370 | 0.800146 | 1.652805e-48 | -8.615850e-47 |
| Msa0469460 | Msa1108560 | 0.805704 | 1.173815e-49 | -8.615850e-47 |
| Msa0469460 | Msa1142600 | 0.803465 | 3.441747e-49 | -8.615850e-47 |
| Msa0469460 | Msa1150760 | 0.808971 | 2.383035e-50 | -8.615850e-47 |
| Msa0469460 | Msa1157210 | 0.801423 | 9.067919e-49 | -8.615850e-47 |
| Msa0469460 | Msa1170340 | 0.831643 | 1.485838e-55 | -8.615850e-47 |
| Msa0469460 | Msa1177090 | 0.814016 | 1.909637e-51 | -8.615850e-47 |
| Msa0469460 | Msa1181090 | 0.816044 | 6.774601e-52 | -8.615850e-47 |
| Msa0469460 | Msa1191350 | 0.827417 | 1.582453e-54 | -8.615850e-47 |
| Msa0469460 | Msa1238250 | 0.821022 | 5.036540e-53 | -8.615850e-47 |
| Msa0469460 | Msa1240710 | 0.803011 | 4.273123e-49 | -8.615850e-47 |
| Msa0469460 | Msa1319030 | 0.826778 | 2.250342e-54 | -8.615850e-47 |
| Msa0469460 | Msa1319190 | 0.831360 | 1.744579e-55 | -8.615850e-47 |
| Msa0469460 | Msa1341030 | 0.802075 | 6.664453e-49 | -8.615850e-47 |
| Msa0469460 | Msa1343590 | 0.816856 | 4.457625e-52 | -8.615850e-47 |
| Msa0469460 | Msa1355340 | 0.837856 | 4.060262e-57 | -8.615850e-47 |
| Msa0469460 | Msa1411550 | 0.828444 | 8.957726e-55 | -8.615850e-47 |
| Msa0267700 | Msa0469460 | 0.808479 | 3.035412e-50 | -8.615850e-47 |
| Msa0274250 | Msa0469460 | 0.823546 | 1.307052e-53 | -8.615850e-47 |
| Msa0276580 | Msa0469460 | 0.827398 | 1.599014e-54 | -8.615850e-47 |
| Msa0278460 | Msa0469460 | 0.813581 | 2.381159e-51 | -8.615850e-47 |
| Msa0281190 | Msa0469460 | 0.833227 | 6.021191e-56 | -8.615850e-47 |
| Msa0303900 | Msa0469460 | 0.812455 | 4.202594e-51 | -8.615850e-47 |
| Msa0314440 | Msa0469460 | 0.808701 | 2.721925e-50 | -8.615850e-47 |
| Msa0316600 | Msa0469460 | 0.829133 | 6.104385e-55 | -8.615850e-47 |
| Msa0328090 | Msa0469460 | 0.829960 | 3.842923e-55 | -8.615850e-47 |
| Msa0346170 | Msa0469460 | 0.810005 | 1.428862e-50 | -8.615850e-47 |
| Msa0348370 | Msa0469460 | 0.807161 | 5.786435e-50 | -8.615850e-47 |
| Msa0349910 | Msa0469460 | 0.806459 | 8.142651e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469460 | MtrunA17_Chr3g0124061 | 89.447 | 199 | 21 | 0 | 1 | 199 | 1 | 199 | 5.29e-134 | 373 |
| Msa0469460 | MtrunA17_Chr3g0124111 | 87.940 | 199 | 24 | 0 | 1 | 199 | 1 | 199 | 6.17e-133 | 370 |
| Msa0469460 | MtrunA17_Chr3g0124141 | 88.945 | 199 | 22 | 0 | 1 | 199 | 1 | 199 | 2.93e-131 | 366 |
| Msa0469460 | MtrunA17_Chr3g0124091 | 89.055 | 201 | 19 | 2 | 1 | 199 | 1 | 200 | 8.08e-129 | 360 |
| Msa0469460 | MtrunA17_Chr3g0124151 | 85.849 | 106 | 15 | 0 | 94 | 199 | 1 | 106 | 4.03e-63 | 191 |
| Msa0469460 | MtrunA17_Chr3g0124131 | 80.000 | 50 | 10 | 0 | 1 | 50 | 1 | 50 | 5.13e-24 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469460 | AT5G65030.1 | 30.612 | 196 | 113 | 6 | 11 | 187 | 10 | 201 | 8.23e-24 | 94.0 |
| Msa0469460 | AT5G10210.1 | 30.769 | 195 | 109 | 7 | 15 | 196 | 13 | 194 | 2.41e-23 | 92.4 |
Find 43 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCAAATCAGTGCCCTTT+TGG | 0.235029 | 3_3:-71265228 | Msa0469460:CDS |
| CTCATGCCCTCAAGAGTTCT+TGG | 0.272286 | 3_3:-71265182 | Msa0469460:CDS |
| ATAAGAGGAGAATGAATAAT+TGG | 0.280000 | 3_3:-71264913 | Msa0469460:CDS |
| TTAATCTCCACTTCCACTTC+TGG | 0.281665 | 3_3:+71264974 | None:intergenic |
| ATGTTGGGGTCACAACTTAT+TGG | 0.325437 | 3_3:-71265112 | Msa0469460:CDS |
| CCACTAGGCTTTGTGTGTTA+AGG | 0.346972 | 3_3:+71265155 | None:intergenic |
| TGTTGGGGTCACAACTTATT+GGG | 0.372157 | 3_3:-71265111 | Msa0469460:CDS |
| ATTTGCGCTTGGTGCAGCTT+TGG | 0.382032 | 3_3:-71264825 | Msa0469460:CDS |
| ATCCCAAAAGGGCACTGATT+TGG | 0.392569 | 3_3:+71265225 | None:intergenic |
| TGCGCTTGGTGCAGCTTTGG+AGG | 0.432752 | 3_3:-71264822 | Msa0469460:CDS |
| ATTAAAAGACTCATCCCAAA+AGG | 0.445229 | 3_3:+71265213 | None:intergenic |
| GCAAGGCTGTATCTTCCAAC+AGG | 0.447411 | 3_3:-71265289 | Msa0469460:CDS |
| GATTCAAGAATCACCTTCCA+TGG | 0.467787 | 3_3:+71265076 | None:intergenic |
| AAAATGGTTGAAGATGGATT+TGG | 0.470551 | 3_3:-71265035 | Msa0469460:CDS |
| AGTAGCTTCGGTTGCTGAGA+TGG | 0.471131 | 3_3:-71264945 | Msa0469460:CDS |
| GATTAAAATAAAAGTAGCTT+CGG | 0.474275 | 3_3:-71264957 | Msa0469460:CDS |
| CTAAGGCAGAGGAAGATGTT+GGG | 0.479580 | 3_3:-71265127 | Msa0469460:CDS |
| CCAAAAGGGCACTGATTTGG+TGG | 0.481239 | 3_3:+71265228 | None:intergenic |
| AGTGGAAGTGATTGCAAAGA+GGG | 0.484026 | 3_3:-71265010 | Msa0469460:CDS |
| TTGGGAAAGGTGAGATTCCA+TGG | 0.488562 | 3_3:-71265093 | Msa0469460:CDS |
| AGATGGAGAAGCAAAATAAG+AGG | 0.509817 | 3_3:-71264928 | Msa0469460:CDS |
| CAACTGAAGTTTGCATATGC+AGG | 0.509989 | 3_3:+71265373 | None:intergenic |
| GCTAAGGCAGAGGAAGATGT+TGG | 0.514746 | 3_3:-71265128 | Msa0469460:CDS |
| TCTGCCTTAGCTCCACCACT+AGG | 0.532067 | 3_3:+71265140 | None:intergenic |
| ACGGCCATGACCATCGTGCT+TGG | 0.538014 | 3_3:-71264871 | Msa0469460:CDS |
| AAAGCCTAGTGGTGGAGCTA+AGG | 0.543884 | 3_3:-71265144 | Msa0469460:CDS |
| TTAAAAGACTCATCCCAAAA+GGG | 0.557578 | 3_3:+71265214 | None:intergenic |
| ATGAATAATTGGAATGAGTG+TGG | 0.557798 | 3_3:-71264902 | Msa0469460:CDS |
| GGGTCACAACTTATTGGGAA+AGG | 0.564555 | 3_3:-71265106 | Msa0469460:CDS |
| AGCACCAAGCACGATGGTCA+TGG | 0.566327 | 3_3:+71264867 | None:intergenic |
| CATAACGCCAGAAGTGGAAG+TGG | 0.570407 | 3_3:-71264981 | Msa0469460:CDS |
| TAGTGGTGGAGCTAAGGCAG+AGG | 0.576496 | 3_3:-71265138 | Msa0469460:CDS |
| GATTGTGATATATTTGCGCT+TGG | 0.580894 | 3_3:-71264836 | Msa0469460:CDS |
| TATGTTCATAACGCCAGAAG+TGG | 0.583659 | 3_3:-71264987 | Msa0469460:CDS |
| GATTCTTGAATCACAAAACA+TGG | 0.589945 | 3_3:-71265065 | Msa0469460:CDS |
| TTGAAGATGGATTTGGTGAG+TGG | 0.598106 | 3_3:-71265028 | Msa0469460:CDS |
| GAAAGGTGAGATTCCATGGA+AGG | 0.610143 | 3_3:-71265089 | Msa0469460:CDS |
| TAAGGCAGAGGAAGATGTTG+GGG | 0.620231 | 3_3:-71265126 | Msa0469460:CDS |
| TAACACACAAAGCCTAGTGG+TGG | 0.644101 | 3_3:-71265152 | Msa0469460:CDS |
| AAACGTTGAATTCATCAAGT+CGG | 0.660973 | 3_3:-71265326 | Msa0469460:CDS |
| CAGCGCAGCACCAAGCACGA+TGG | 0.681591 | 3_3:+71264861 | None:intergenic |
| CCTTAACACACAAAGCCTAG+TGG | 0.691369 | 3_3:-71265155 | Msa0469460:CDS |
| GAGTGGAAGTGATTGCAAAG+AGG | 0.703550 | 3_3:-71265011 | Msa0469460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATGGAGTTAAAAAAA+TGG | - | chr3_3:71265154-71265173 | Msa0469460:CDS | 20.0% |
| !! | GATTAAAATAAAAGTAGCTT+CGG | - | chr3_3:71265248-71265267 | Msa0469460:CDS | 20.0% |
| ! | GTTAAAAAAATGGTTGAAGA+TGG | - | chr3_3:71265164-71265183 | Msa0469460:CDS | 25.0% |
| ! | ATAAGAGGAGAATGAATAAT+TGG | - | chr3_3:71265292-71265311 | Msa0469460:CDS | 25.0% |
| AAACGTTGAATTCATCAAGT+CGG | - | chr3_3:71264879-71264898 | Msa0469460:CDS | 30.0% | |
| !! | ATTCTTTTCTTGTTTCCTGT+TGG | + | chr3_3:71264934-71264953 | None:intergenic | 30.0% |
| TTAAAAGACTCATCCCAAAA+GGG | + | chr3_3:71264994-71265013 | None:intergenic | 30.0% | |
| ATTAAAAGACTCATCCCAAA+AGG | + | chr3_3:71264995-71265014 | None:intergenic | 30.0% | |
| GATTCTTGAATCACAAAACA+TGG | - | chr3_3:71265140-71265159 | Msa0469460:CDS | 30.0% | |
| ! | AAAATGGTTGAAGATGGATT+TGG | - | chr3_3:71265170-71265189 | Msa0469460:CDS | 30.0% |
| ATGAATAATTGGAATGAGTG+TGG | - | chr3_3:71265303-71265322 | Msa0469460:CDS | 30.0% | |
| AGATGGAGAAGCAAAATAAG+AGG | - | chr3_3:71265277-71265296 | Msa0469460:CDS | 35.0% | |
| AATGAGTGTGGATGCAAAAA+CGG | - | chr3_3:71265315-71265334 | Msa0469460:CDS | 35.0% | |
| GATTGTGATATATTTGCGCT+TGG | - | chr3_3:71265369-71265388 | Msa0469460:CDS | 35.0% | |
| CAACTGAAGTTTGCATATGC+AGG | + | chr3_3:71264835-71264854 | None:intergenic | 40.0% | |
| CGGCAAAAAACATGTTTGCA+AGG | - | chr3_3:71264899-71264918 | Msa0469460:CDS | 40.0% | |
| ! | GGTTTTCCAAGAACTCTTGA+GGG | + | chr3_3:71265032-71265051 | None:intergenic | 40.0% |
| ! | AGGTTTTCCAAGAACTCTTG+AGG | + | chr3_3:71265033-71265052 | None:intergenic | 40.0% |
| ATGTTGGGGTCACAACTTAT+TGG | - | chr3_3:71265093-71265112 | Msa0469460:CDS | 40.0% | |
| TGTTGGGGTCACAACTTATT+GGG | - | chr3_3:71265094-71265113 | Msa0469460:CDS | 40.0% | |
| GATTCAAGAATCACCTTCCA+TGG | + | chr3_3:71265132-71265151 | None:intergenic | 40.0% | |
| !! | TTGAAGATGGATTTGGTGAG+TGG | - | chr3_3:71265177-71265196 | Msa0469460:CDS | 40.0% |
| AGTGGAAGTGATTGCAAAGA+GGG | - | chr3_3:71265195-71265214 | Msa0469460:CDS | 40.0% | |
| TATGTTCATAACGCCAGAAG+TGG | - | chr3_3:71265218-71265237 | Msa0469460:CDS | 40.0% | |
| TTAATCTCCACTTCCACTTC+TGG | + | chr3_3:71265234-71265253 | None:intergenic | 40.0% | |
| ! | GCATATGCAGGTGTTTTCGA+TGG | + | chr3_3:71264823-71264842 | None:intergenic | 45.0% |
| ! | CACCAAATCAGTGCCCTTTT+GGG | - | chr3_3:71264978-71264997 | Msa0469460:CDS | 45.0% |
| !! | ATCCCAAAAGGGCACTGATT+TGG | + | chr3_3:71264983-71265002 | None:intergenic | 45.0% |
| ! | CCACTAGGCTTTGTGTGTTA+AGG | + | chr3_3:71265053-71265072 | None:intergenic | 45.0% |
| CCTTAACACACAAAGCCTAG+TGG | - | chr3_3:71265050-71265069 | Msa0469460:CDS | 45.0% | |
| TAACACACAAAGCCTAGTGG+TGG | - | chr3_3:71265053-71265072 | Msa0469460:CDS | 45.0% | |
| CTAAGGCAGAGGAAGATGTT+GGG | - | chr3_3:71265078-71265097 | Msa0469460:CDS | 45.0% | |
| TAAGGCAGAGGAAGATGTTG+GGG | - | chr3_3:71265079-71265098 | Msa0469460:CDS | 45.0% | |
| GGGTCACAACTTATTGGGAA+AGG | - | chr3_3:71265099-71265118 | Msa0469460:CDS | 45.0% | |
| TTGGGAAAGGTGAGATTCCA+TGG | - | chr3_3:71265112-71265131 | Msa0469460:CDS | 45.0% | |
| GAAAGGTGAGATTCCATGGA+AGG | - | chr3_3:71265116-71265135 | Msa0469460:CDS | 45.0% | |
| GAGTGGAAGTGATTGCAAAG+AGG | - | chr3_3:71265194-71265213 | Msa0469460:CDS | 45.0% | |
| GCAAGGCTGTATCTTCCAAC+AGG | - | chr3_3:71264916-71264935 | Msa0469460:CDS | 50.0% | |
| !! | CCAAAAGGGCACTGATTTGG+TGG | + | chr3_3:71264980-71264999 | None:intergenic | 50.0% |
| ! | CCACCAAATCAGTGCCCTTT+TGG | - | chr3_3:71264977-71264996 | Msa0469460:CDS | 50.0% |
| CTCATGCCCTCAAGAGTTCT+TGG | - | chr3_3:71265023-71265042 | Msa0469460:CDS | 50.0% | |
| ! | AAAGCCTAGTGGTGGAGCTA+AGG | - | chr3_3:71265061-71265080 | Msa0469460:CDS | 50.0% |
| GCTAAGGCAGAGGAAGATGT+TGG | - | chr3_3:71265077-71265096 | Msa0469460:CDS | 50.0% | |
| CATAACGCCAGAAGTGGAAG+TGG | - | chr3_3:71265224-71265243 | Msa0469460:CDS | 50.0% | |
| AGTAGCTTCGGTTGCTGAGA+TGG | - | chr3_3:71265260-71265279 | Msa0469460:CDS | 50.0% | |
| !! | ATTTGCGCTTGGTGCAGCTT+TGG | - | chr3_3:71265380-71265399 | Msa0469460:CDS | 50.0% |
| TCTGCCTTAGCTCCACCACT+AGG | + | chr3_3:71265068-71265087 | None:intergenic | 55.0% | |
| ! | TAGTGGTGGAGCTAAGGCAG+AGG | - | chr3_3:71265067-71265086 | Msa0469460:CDS | 55.0% |
| AGCACCAAGCACGATGGTCA+TGG | + | chr3_3:71265341-71265360 | None:intergenic | 55.0% | |
| ACGGCCATGACCATCGTGCT+TGG | - | chr3_3:71265334-71265353 | Msa0469460:CDS | 60.0% | |
| !! | TGCGCTTGGTGCAGCTTTGG+AGG | - | chr3_3:71265383-71265402 | Msa0469460:CDS | 60.0% |
| CAGCGCAGCACCAAGCACGA+TGG | + | chr3_3:71265347-71265366 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71264814 | 71265413 | 71264814 | ID=Msa0469460;Name=Msa0469460 |
| chr3_3 | mRNA | 71264814 | 71265413 | 71264814 | ID=Msa0469460-mRNA-1;Parent=Msa0469460;Name=Msa0469460-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|199 |
| chr3_3 | exon | 71264814 | 71265413 | 71264814 | ID=Msa0469460-mRNA-1:exon:17524;Parent=Msa0469460-mRNA-1 |
| chr3_3 | CDS | 71264814 | 71265413 | 71264814 | ID=Msa0469460-mRNA-1:cds;Parent=Msa0469460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
