AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589720 MtrunA17_Chr4g0007031 98.643 221 3 0 1 221 1 221 1.42e-160 442
Msa0589720 MtrunA17_Chr5g0419971 98.643 221 3 0 1 221 1 221 1.42e-160 442
Msa0589720 MtrunA17_Chr5g0419981 98.643 221 3 0 1 221 1 221 1.42e-160 442
Msa0589720 MtrunA17_Chr4g0007051 98.190 221 4 0 1 221 1 221 4.86e-160 441
Msa0589720 MtrunA17_Chr2g0285871 96.380 221 8 0 1 221 1 221 2.47e-158 437
Msa0589720 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 2.85e-158 436
Msa0589720 MtrunA17_Chr1g0189841 81.081 222 41 1 1 221 1 222 1.93e-130 366
Msa0589720 MtrunA17_Chr6g0449771 77.477 222 47 3 1 221 1 220 4.78e-119 337
Msa0589720 MtrunA17_Chr6g0449751 77.027 222 48 3 1 221 1 220 6.71e-119 337
Msa0589720 MtrunA17_Chr6g0449731 77.376 221 47 3 1 220 1 219 1.72e-118 336
Msa0589720 MtrunA17_Chr6g0449761 75.576 217 52 1 1 217 1 216 1.71e-116 332
Msa0589720 MtrunA17_Chr6g0449781 62.443 221 81 2 1 221 1 219 3.84e-91 266
Msa0589720 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 2.45e-88 259
Msa0589720 MtrunA17_Chr1g0156131 59.447 217 77 3 1 215 1 208 8.91e-82 243
Msa0589720 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 5.76e-78 233
Msa0589720 MtrunA17_Chr2g0292901 57.534 219 82 5 1 215 1 212 3.99e-74 223
Msa0589720 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.25e-71 216
Msa0589720 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 1.05e-69 211
Msa0589720 MtrunA17_Chr1g0193671 46.047 215 109 3 3 215 4 213 1.67e-60 189
Msa0589720 MtrunA17_Chr1g0193421 46.000 200 101 3 18 215 20 214 9.46e-54 171
Msa0589720 MtrunA17_Chr7g0271211 47.449 196 96 3 22 215 20 210 3.37e-52 167
Msa0589720 MtrunA17_Chr5g0414971 45.685 197 99 4 22 215 27 218 1.74e-49 160
Msa0589720 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.87e-47 153
Msa0589720 MtrunA17_Chr1g0210761 41.346 208 90 7 19 215 20 206 1.65e-43 145
Msa0589720 MtrunA17_Chr2g0300561 42.453 212 105 5 4 213 7 203 5.97e-43 144
Msa0589720 MtrunA17_Chr1g0178711 36.652 221 128 5 2 215 5 220 2.48e-42 142
Msa0589720 MtrunA17_Chr2g0300581 39.252 214 113 5 3 214 6 204 7.33e-40 135
Msa0589720 MtrunA17_Chr2g0300591 39.437 213 112 5 3 213 6 203 8.16e-40 135
Msa0589720 MtrunA17_Chr8g0335851 40.000 200 107 4 22 219 26 214 3.42e-36 127
Msa0589720 MtrunA17_Chr8g0343911 38.889 216 116 6 1 214 1 202 4.98e-35 123
Msa0589720 MtrunA17_Chr8g0344021 40.102 197 98 5 1 190 1 184 2.00e-34 122
Msa0589720 MtrunA17_Chr3g0084531 39.378 193 107 5 7 197 3 187 7.81e-33 117
Msa0589720 MtrunA17_Chr8g0343934 38.857 175 98 4 7 179 3 170 1.96e-32 117
Msa0589720 MtrunA17_Chr2g0297231 37.073 205 117 5 7 206 3 200 7.44e-31 112
Msa0589720 MtrunA17_Chr2g0297241 36.967 211 117 6 1 206 1 200 1.13e-30 112
Msa0589720 MtrunA17_Chr8g0343954 35.938 192 112 5 26 215 22 204 2.83e-30 111
Msa0589720 MtrunA17_Chr8g0344051 40.782 179 94 4 1 176 1 170 3.08e-30 111
Msa0589720 MtrunA17_Chr2g0313961 36.493 211 118 6 1 206 1 200 5.54e-30 110
Msa0589720 MtrunA17_Chr3g0130241 37.989 179 105 3 3 179 70 244 2.24e-29 110
Msa0589720 MtrunA17_Chr8g0343961 34.112 214 124 6 4 215 6 204 2.77e-29 108
Msa0589720 MtrunA17_Chr3g0084511 39.655 174 95 5 26 197 21 186 4.66e-29 108
Msa0589720 MtrunA17_Chr3g0084521 37.245 196 106 6 4 197 6 186 5.24e-29 107
Msa0589720 MtrunA17_Chr2g0301611 36.416 173 101 4 7 177 3 168 4.28e-28 105
Msa0589720 MtrunA17_Chr2g0321601 33.641 217 118 7 2 214 7 201 1.39e-27 104
Msa0589720 MtrunA17_Chr2g0302171 38.172 186 103 5 26 206 22 200 1.65e-27 103
Msa0589720 MtrunA17_Chr4g0026201 35.784 204 105 6 16 214 21 203 1.83e-27 103
Msa0589720 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.01e-27 103
Msa0589720 MtrunA17_Chr4g0026191 35.294 204 106 6 16 214 21 203 4.06e-27 103
Msa0589720 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.74e-27 102
Msa0589720 MtrunA17_Chr2g0302541 38.172 186 103 5 26 206 22 200 7.55e-27 102
Msa0589720 MtrunA17_Chr5g0411961 34.286 210 124 5 1 206 1 200 2.28e-26 101
Msa0589720 MtrunA17_Chr8g0343921 34.419 215 124 7 1 213 1 200 9.48e-26 99.4
Msa0589720 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 2.33e-25 98.6
Msa0589720 MtrunA17_Chr4g0003361 34.703 219 119 7 1 215 2 200 5.84e-25 97.4
Msa0589720 MtrunA17_Chr8g0344031 33.641 217 131 6 1 215 1 206 6.76e-25 97.4
Msa0589720 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 1.10e-24 96.7
Msa0589720 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 3.47e-24 95.5
Msa0589720 MtrunA17_Chr2g0286171 32.420 219 132 7 1 215 1 207 1.71e-23 93.6
Msa0589720 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.29e-23 93.2
Msa0589720 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.38e-20 80.5
Msa0589720 MtrunA17_Chr3g0084551 33.659 205 114 9 1 202 1 186 6.21e-19 82.0
Msa0589720 MtrunA17_Chr3g0084501 37.736 106 61 3 7 110 3 105 9.36e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589720 AT3G05950.1 64.889 225 71 4 4 221 5 228 5.88e-96 280
Msa0589720 AT5G39150.1 64.929 211 71 2 7 215 9 218 2.63e-94 275
Msa0589720 AT5G39180.1 64.929 211 71 2 7 215 9 218 4.34e-94 275
Msa0589720 AT5G39120.1 64.929 211 71 2 7 215 9 218 4.49e-94 275
Msa0589720 AT5G39110.1 64.455 211 73 1 7 215 9 219 1.56e-92 271
Msa0589720 AT5G39160.1 66.029 209 68 2 9 215 11 218 2.36e-92 270
Msa0589720 AT5G39190.1 66.029 209 68 2 9 215 11 218 3.53e-92 270
Msa0589720 AT5G39130.1 65.072 209 70 2 9 215 11 218 7.68e-92 269
Msa0589720 AT4G14630.1 60.731 219 82 2 1 215 3 221 4.89e-88 259
Msa0589720 AT5G39160.3 63.636 209 69 2 9 215 11 214 1.30e-87 258
Msa0589720 AT3G04200.1 62.500 208 75 3 8 213 13 219 6.25e-84 249
Msa0589720 AT5G39190.2 59.903 207 62 1 9 215 11 196 4.28e-80 238
Msa0589720 AT5G39160.2 59.420 207 63 1 9 215 11 196 1.06e-79 237
Msa0589720 AT5G38910.1 59.545 220 82 4 1 215 1 218 3.50e-79 237
Msa0589720 AT5G38960.1 60.697 201 75 3 18 215 22 221 8.77e-78 233
Msa0589720 AT5G38940.1 60.714 196 74 2 22 215 26 220 1.56e-77 233
Msa0589720 AT5G38940.2 60.714 196 74 2 22 215 50 244 2.18e-77 233
Msa0589720 AT5G38930.1 61.616 198 73 2 20 215 24 220 2.37e-77 232
Msa0589720 AT3G04170.1 55.981 209 86 3 8 214 12 216 6.82e-75 226
Msa0589720 AT3G04190.1 56.219 201 85 2 15 213 19 218 7.14e-74 223
Msa0589720 AT3G04150.1 54.167 216 93 3 4 214 5 219 1.32e-72 220
Msa0589720 AT3G04150.2 51.316 228 94 3 4 214 5 232 8.99e-71 216
Msa0589720 AT3G04180.1 54.726 201 88 2 15 213 19 218 9.88e-71 215
Msa0589720 AT1G02335.1 43.458 214 114 3 4 215 6 214 6.38e-56 177
Msa0589720 AT5G38910.2 48.636 220 69 4 1 215 1 181 1.21e-55 176
Msa0589720 AT3G62020.1 46.009 213 106 5 6 215 8 214 6.16e-55 175
Msa0589720 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.62e-53 171
Msa0589720 AT3G05930.1 47.525 202 97 4 4 202 6 201 1.55e-52 169
Msa0589720 AT1G18970.1 46.000 200 99 4 18 215 25 217 4.18e-51 165
Msa0589720 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.25e-50 164
Msa0589720 AT1G18980.1 45.500 200 100 4 18 215 25 217 6.97e-49 159
Msa0589720 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.39e-47 155
Msa0589720 AT3G10080.1 40.099 202 112 5 18 215 22 218 3.61e-44 147
Msa0589720 AT1G10460.1 41.414 198 108 5 22 214 19 213 4.02e-44 147
Msa0589720 AT3G10080.2 40.099 202 112 5 18 215 93 289 1.70e-43 148
Msa0589720 AT5G20630.1 42.381 210 109 6 1 208 1 200 4.15e-42 142
Msa0589720 AT5G61750.1 41.081 185 104 2 4 186 1 182 7.32e-40 136
Msa0589720 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.04e-34 121
Msa0589720 AT1G74820.1 38.660 194 110 4 24 215 38 224 5.30e-33 119
Msa0589720 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.35e-18 78.2

Find 56 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4_2:+12972997 None:intergenic
TTTCAACTAAATGTTGGATA+TGG 0.257371 4_2:-12972420 Msa0589720:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4_2:-12973086 Msa0589720:CDS
CTTGTCAACTTGAAAAGCTT+TGG 0.328967 4_2:+12972293 None:intergenic
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4_2:+12972689 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4_2:-12972631 Msa0589720:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 4_2:+12972438 None:intergenic
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4_2:+12972544 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.401215 4_2:-12973092 Msa0589720:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_2:-12972717 Msa0589720:CDS
ATATACATACCACCATCTTT+GGG 0.405165 4_2:+12972998 None:intergenic
GGCAACGCTGTTGCTATTGC+TGG 0.409649 4_2:-12972399 Msa0589720:CDS
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_2:+12972577 None:intergenic
TTGGAGAGGGCTAGGGTCAT+AGG 0.420416 4_2:+12973045 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_2:-12972453 Msa0589720:CDS
TAATTTGCAGTATTTGTCAA+TGG 0.428669 4_2:-12972780 Msa0589720:intron
CAAAAGTCTTGGAGAGGGCT+AGG 0.434671 4_2:+12973037 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4_2:-12972260 Msa0589720:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4_2:-12972534 Msa0589720:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_2:+12972741 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_2:-12972657 Msa0589720:CDS
AATTTGCAGTATTTGTCAAT+GGG 0.453375 4_2:-12972779 Msa0589720:intron
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_2:+12972561 None:intergenic
TTTGCAACGGTGATAACTCC+TGG 0.470922 4_2:+12972360 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_2:+12973026 None:intergenic
ATCACCCTTGTTGAGCACTT+TGG 0.491510 4_2:+12972473 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_2:+12972576 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_2:-12972716 Msa0589720:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 4_2:-12972642 Msa0589720:CDS
GAAAATGAATAAGACCAATT+GGG 0.510497 4_2:+12972439 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_2:+12972318 None:intergenic
AATAGTTGGTCTACAGTGAC+TGG 0.527501 4_2:+12972660 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4_2:+12972646 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_2:+12972591 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_2:+12972740 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_2:-12973010 Msa0589720:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_2:+12972308 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4_2:+12973086 None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG 0.564154 4_2:+12973038 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_2:+12972562 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_2:-12972378 Msa0589720:CDS
GGGAATGCCTCTAATGCACT+AGG 0.589101 4_2:-12972696 Msa0589720:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_2:+12972565 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 4_2:+12972347 None:intergenic
CTTCACCAAAGTGCTCAACA+AGG 0.595909 4_2:-12972478 Msa0589720:CDS
AGGGCTAGGGTCATAGGCAA+AGG 0.609226 4_2:+12973051 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_2:-12973007 Msa0589720:intron
GTCATAGGCAAAGGCAACAG+AGG 0.637895 4_2:+12973060 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 4_2:+12972999 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.641422 4_2:+12973032 None:intergenic
TTCACCAAAGTGCTCAACAA+GGG 0.645837 4_2:-12972477 Msa0589720:CDS
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_2:+12972573 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_2:+12973031 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 4_2:-12972576 Msa0589720:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_2:+12972742 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4_2:-12972549 Msa0589720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACAACTAAATTTTT+AGG - chr4_2:12972416-12972435 Msa0589720:CDS 10.0%
!!! TTAATTACAACTAAATTTTT+AGG - chr4_2:12972416-12972435 Msa0589720:CDS 10.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr4_2:12972404-12972423 None:intergenic 20.0%
!! TTTAAATATGCAAATATTCG+AGG - chr4_2:12972439-12972458 Msa0589720:CDS 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_2:12972481-12972500 Msa0589720:CDS 20.0%
!!! ATTCATTTTCAACTAAATGT+TGG - chr4_2:12972947-12972966 Msa0589720:intron 20.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr4_2:12972404-12972423 None:intergenic 20.0%
!! TTTAAATATGCAAATATTCG+AGG - chr4_2:12972439-12972458 Msa0589720:CDS 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_2:12972481-12972500 Msa0589720:CDS 20.0%
!!! ATTCATTTTCAACTAAATGT+TGG - chr4_2:12972947-12972966 Msa0589720:intron 20.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_2:12972478-12972497 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTCAA+TGG - chr4_2:12972593-12972612 Msa0589720:CDS 25.0%
! AATTTGCAGTATTTGTCAAT+GGG - chr4_2:12972594-12972613 Msa0589720:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr4_2:12972937-12972956 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr4_2:12972938-12972957 None:intergenic 25.0%
! TTTCAACTAAATGTTGGATA+TGG - chr4_2:12972953-12972972 Msa0589720:intron 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG + chr4_2:12973029-12973048 None:intergenic 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_2:12972478-12972497 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTCAA+TGG - chr4_2:12972593-12972612 Msa0589720:CDS 25.0%
! AATTTGCAGTATTTGTCAAT+GGG - chr4_2:12972594-12972613 Msa0589720:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr4_2:12972937-12972956 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr4_2:12972938-12972957 None:intergenic 25.0%
! TTTCAACTAAATGTTGGATA+TGG - chr4_2:12972953-12972972 Msa0589720:intron 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG + chr4_2:12973029-12973048 None:intergenic 25.0%
ATATACATACCACCATCTTT+GGG + chr4_2:12972378-12972397 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_2:12972379-12972398 None:intergenic 30.0%
! TATGCAAATATTCGAGGTTT+TGG - chr4_2:12972445-12972464 Msa0589720:CDS 30.0%
!!! GTTTTTTTGTTTAGCTAGCT+AGG - chr4_2:12972512-12972531 Msa0589720:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_2:12973113-12973132 Msa0589720:exon 30.0%
ATATACATACCACCATCTTT+GGG + chr4_2:12972378-12972397 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_2:12972379-12972398 None:intergenic 30.0%
! TATGCAAATATTCGAGGTTT+TGG - chr4_2:12972445-12972464 Msa0589720:CDS 30.0%
!!! GTTTTTTTGTTTAGCTAGCT+AGG - chr4_2:12972512-12972531 Msa0589720:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_2:12973113-12973132 Msa0589720:exon 30.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_2:12972281-12972300 Msa0589720:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_2:12972350-12972369 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_2:12972377-12972396 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_2:12972636-12972655 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_2:12972656-12972675 Msa0589720:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_2:12972657-12972676 Msa0589720:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_2:12972742-12972761 Msa0589720:CDS 35.0%
CTTGTCAACTTGAAAAGCTT+TGG + chr4_2:12973083-12973102 None:intergenic 35.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_2:12972281-12972300 Msa0589720:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_2:12972350-12972369 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_2:12972377-12972396 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_2:12972636-12972655 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_2:12972656-12972675 Msa0589720:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_2:12972657-12972676 Msa0589720:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_2:12972742-12972761 Msa0589720:CDS 35.0%
CTTGTCAACTTGAAAAGCTT+TGG + chr4_2:12973083-12973102 None:intergenic 35.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_2:12972344-12972363 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_2:12972635-12972654 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_2:12972687-12972706 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_2:12972716-12972735 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_2:12972716-12972735 Msa0589720:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_2:12972814-12972833 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_2:12972815-12972834 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_2:12972824-12972843 Msa0589720:intron 40.0%
! TTCACCAAAGTGCTCAACAA+GGG - chr4_2:12972896-12972915 Msa0589720:intron 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_2:12972920-12972939 Msa0589720:intron 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_2:12973058-12973077 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_2:12973068-12973087 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_2:12972344-12972363 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_2:12972635-12972654 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_2:12972687-12972706 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_2:12972716-12972735 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_2:12972716-12972735 Msa0589720:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_2:12972814-12972833 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_2:12972815-12972834 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_2:12972824-12972843 Msa0589720:intron 40.0%
! TTCACCAAAGTGCTCAACAA+GGG - chr4_2:12972896-12972915 Msa0589720:intron 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_2:12972920-12972939 Msa0589720:intron 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_2:12973058-12973077 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_2:12973068-12973087 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_2:12972290-12972309 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_2:12972287-12972306 Msa0589720:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG + chr4_2:12972338-12972357 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_2:12972345-12972364 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_2:12972363-12972382 Msa0589720:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_2:12972366-12972385 Msa0589720:CDS 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_2:12972634-12972653 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_2:12972730-12972749 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_2:12972731-12972750 Msa0589720:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_2:12972785-12972804 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_2:12972832-12972851 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_2:12972839-12972858 Msa0589720:intron 45.0%
! CTTCACCAAAGTGCTCAACA+AGG - chr4_2:12972895-12972914 Msa0589720:intron 45.0%
ATCACCCTTGTTGAGCACTT+TGG + chr4_2:12972903-12972922 None:intergenic 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_2:12972995-12973014 Msa0589720:intron 45.0%
TTTGCAACGGTGATAACTCC+TGG + chr4_2:12973016-12973035 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_2:12972290-12972309 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_2:12972287-12972306 Msa0589720:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG + chr4_2:12972338-12972357 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_2:12972345-12972364 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_2:12972363-12972382 Msa0589720:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_2:12972366-12972385 Msa0589720:CDS 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_2:12972634-12972653 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_2:12972730-12972749 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_2:12972731-12972750 Msa0589720:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_2:12972785-12972804 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_2:12972832-12972851 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_2:12972839-12972858 Msa0589720:intron 45.0%
! CTTCACCAAAGTGCTCAACA+AGG - chr4_2:12972895-12972914 Msa0589720:intron 45.0%
ATCACCCTTGTTGAGCACTT+TGG + chr4_2:12972903-12972922 None:intergenic 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_2:12972995-12973014 Msa0589720:intron 45.0%
TTTGCAACGGTGATAACTCC+TGG + chr4_2:12973016-12973035 None:intergenic 45.0%
GTCATAGGCAAAGGCAACAG+AGG + chr4_2:12972316-12972335 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG + chr4_2:12972339-12972358 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_2:12972677-12972696 Msa0589720:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_2:12972766-12972785 Msa0589720:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_2:12972767-12972786 Msa0589720:CDS 50.0%
GTCATAGGCAAAGGCAACAG+AGG + chr4_2:12972316-12972335 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG + chr4_2:12972339-12972358 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_2:12972677-12972696 Msa0589720:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_2:12972766-12972785 Msa0589720:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_2:12972767-12972786 Msa0589720:CDS 50.0%
AGGGCTAGGGTCATAGGCAA+AGG + chr4_2:12972325-12972344 None:intergenic 55.0%
TTGGAGAGGGCTAGGGTCAT+AGG + chr4_2:12972331-12972350 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_2:12972799-12972818 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_2:12972803-12972822 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_2:12972811-12972830 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG - chr4_2:12972974-12972993 Msa0589720:intron 55.0%
AGGGCTAGGGTCATAGGCAA+AGG + chr4_2:12972325-12972344 None:intergenic 55.0%
TTGGAGAGGGCTAGGGTCAT+AGG + chr4_2:12972331-12972350 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_2:12972799-12972818 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_2:12972803-12972822 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_2:12972811-12972830 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG - chr4_2:12972974-12972993 Msa0589720:intron 55.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_2:12972800-12972819 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_2:12972797-12972816 Msa0589720:intron 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_2:12972800-12972819 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_2:12972797-12972816 Msa0589720:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12972245 12973150 12972245 ID=Msa0589720;Name=Msa0589720
chr4_2 mRNA 12972245 12973150 12972245 ID=Msa0589720-mRNA-1;Parent=Msa0589720;Name=Msa0589720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=25|1|0.5|1|1|1|2|0|221
chr4_2 exon 12972245 12972792 12972245 ID=Msa0589720-mRNA-1:exon:3765;Parent=Msa0589720-mRNA-1
chr4_2 exon 12973008 12973150 12973008 ID=Msa0589720-mRNA-1:exon:3764;Parent=Msa0589720-mRNA-1
chr4_2 five_prime_UTR 12973126 12973150 12973126 ID=Msa0589720-mRNA-1:five_prime_utr;Parent=Msa0589720-mRNA-1
chr4_2 CDS 12973008 12973125 12973008 ID=Msa0589720-mRNA-1:cds;Parent=Msa0589720-mRNA-1
chr4_2 CDS 12972245 12972792 12972245 ID=Msa0589720-mRNA-1:cds;Parent=Msa0589720-mRNA-1
Gene Sequence

>Msa0589720

ATGAAGACTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTGTTGCCTTTGCCTATGACCCTAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTCAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAATCAAGACAACAATCGTCTCTTCACCAAAGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTAAATGTTGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTTGACAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0589720

MKTIYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*