AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933610 MtrunA17_Chr6g0449731 94.521 219 7 1 1 214 1 219 4.12e-148 410
Msa0933610 MtrunA17_Chr6g0449771 94.091 220 8 1 1 215 1 220 4.25e-148 410
Msa0933610 MtrunA17_Chr6g0449751 91.818 220 13 1 1 215 1 220 3.39e-144 400
Msa0933610 MtrunA17_Chr6g0449761 93.056 216 10 1 1 211 1 216 8.29e-144 400
Msa0933610 MtrunA17_Chr1g0189841 80.645 217 34 4 7 215 6 222 5.32e-120 339
Msa0933610 MtrunA17_Chr2g0285871 77.064 218 43 3 5 215 4 221 1.92e-115 328
Msa0933610 MtrunA17_Chr4g0007041 75.113 221 49 2 1 215 1 221 3.08e-115 327
Msa0933610 MtrunA17_Chr4g0007031 76.606 218 44 3 5 215 4 221 4.05e-115 327
Msa0933610 MtrunA17_Chr4g0007051 76.606 218 44 3 5 215 4 221 4.05e-115 327
Msa0933610 MtrunA17_Chr5g0419971 76.606 218 44 3 5 215 4 221 4.05e-115 327
Msa0933610 MtrunA17_Chr5g0419981 76.606 218 44 3 5 215 4 221 4.05e-115 327
Msa0933610 MtrunA17_Chr6g0449781 72.273 220 55 2 1 215 1 219 1.07e-105 303
Msa0933610 MtrunA17_Chr6g0449791 70.388 206 60 1 1 205 1 206 1.51e-99 287
Msa0933610 MtrunA17_Chr1g0156131 61.809 199 61 3 19 210 19 209 6.86e-80 238
Msa0933610 MtrunA17_Chr2g0292831 61.307 199 65 3 19 210 19 212 5.41e-79 235
Msa0933610 MtrunA17_Chr2g0292901 61.000 200 65 4 19 210 19 213 1.87e-76 229
Msa0933610 MtrunA17_Chr2g0292861 63.953 172 54 3 47 210 7 178 2.13e-71 215
Msa0933610 MtrunA17_Chr2g0292841 63.953 172 54 3 47 210 7 178 5.71e-70 211
Msa0933610 MtrunA17_Chr1g0193671 48.515 202 94 4 12 207 9 206 6.13e-59 184
Msa0933610 MtrunA17_Chr7g0271211 53.158 190 83 3 22 209 20 205 2.61e-57 180
Msa0933610 MtrunA17_Chr1g0193421 51.064 188 86 3 18 203 20 203 3.19e-55 175
Msa0933610 MtrunA17_Chr2g0292911 67.797 118 36 1 47 162 7 124 2.30e-52 165
Msa0933610 MtrunA17_Chr5g0414971 48.925 186 88 4 22 204 27 208 1.84e-51 166
Msa0933610 MtrunA17_Chr1g0210761 43.981 216 101 7 2 210 5 207 9.29e-49 158
Msa0933610 MtrunA17_Chr1g0178711 40.191 209 115 4 5 207 9 213 1.73e-43 145
Msa0933610 MtrunA17_Chr8g0344021 44.103 195 90 5 1 189 3 184 7.50e-42 140
Msa0933610 MtrunA17_Chr2g0300561 42.718 206 103 5 1 204 3 195 8.80e-42 140
Msa0933610 MtrunA17_Chr2g0300591 41.885 191 98 4 1 189 3 182 8.32e-39 133
Msa0933610 MtrunA17_Chr2g0300581 41.885 191 98 4 1 189 3 182 8.78e-39 133
Msa0933610 MtrunA17_Chr8g0335851 42.262 168 94 2 22 188 26 191 5.77e-36 126
Msa0933610 MtrunA17_Chr8g0343911 40.331 181 100 4 26 204 19 193 4.70e-34 120
Msa0933610 MtrunA17_Chr8g0343934 38.342 193 111 4 18 209 14 199 4.77e-34 120
Msa0933610 MtrunA17_Chr8g0343954 40.437 183 101 4 28 209 24 199 2.03e-33 119
Msa0933610 MtrunA17_Chr3g0084531 39.785 186 102 5 26 208 22 200 1.37e-32 117
Msa0933610 MtrunA17_Chr2g0313961 39.086 197 111 5 18 210 14 205 3.29e-32 116
Msa0933610 MtrunA17_Chr8g0344041 35.981 214 124 5 2 210 4 209 4.98e-32 115
Msa0933610 MtrunA17_Chr2g0297231 38.071 197 113 4 18 210 14 205 6.74e-32 115
Msa0933610 MtrunA17_Chr2g0297241 38.579 197 112 5 18 210 14 205 1.13e-31 114
Msa0933610 MtrunA17_Chr8g0344051 38.756 209 107 6 5 207 7 200 2.19e-31 114
Msa0933610 MtrunA17_Chr2g0302171 39.683 189 105 4 26 210 22 205 3.47e-31 113
Msa0933610 MtrunA17_Chr3g0130241 35.678 199 119 4 3 199 69 260 1.07e-30 114
Msa0933610 MtrunA17_Chr3g0084511 38.220 191 105 5 26 210 21 204 1.20e-30 112
Msa0933610 MtrunA17_Chr4g0003361 40.116 172 95 4 43 210 34 201 1.63e-30 111
Msa0933610 MtrunA17_Chr8g0343961 35.981 214 119 7 3 210 4 205 2.43e-30 111
Msa0933610 MtrunA17_Chr8g0343921 40.110 182 99 6 28 207 22 195 2.68e-30 111
Msa0933610 MtrunA17_Chr3g0084521 36.792 212 115 6 5 210 6 204 4.31e-30 110
Msa0933610 MtrunA17_Chr2g0301611 37.056 197 115 5 18 210 14 205 1.10e-29 109
Msa0933610 MtrunA17_Chr8g0344031 35.545 211 122 5 4 210 7 207 2.67e-28 105
Msa0933610 MtrunA17_Chr2g0302541 37.566 189 109 5 26 210 22 205 4.91e-27 102
Msa0933610 MtrunA17_Chr5g0411961 35.025 197 119 5 18 210 14 205 6.20e-27 102
Msa0933610 MtrunA17_Chr4g0012651 37.037 189 110 5 26 210 22 205 5.18e-26 100
Msa0933610 MtrunA17_Chr7g0217811 36.508 189 111 5 26 210 22 205 6.83e-26 99.8
Msa0933610 MtrunA17_Chr2g0286171 35.047 214 127 6 1 210 3 208 1.62e-25 99.0
Msa0933610 MtrunA17_Chr3g0115141 36.898 187 107 5 28 210 27 206 2.32e-25 98.2
Msa0933610 MtrunA17_Chr4g0026191 39.161 143 77 4 74 210 67 205 4.46e-24 94.7
Msa0933610 MtrunA17_Chr4g0026201 39.161 143 77 4 74 210 67 205 4.46e-24 94.7
Msa0933610 MtrunA17_Chr2g0321581 31.884 207 111 6 5 204 10 193 6.45e-24 94.4
Msa0933610 MtrunA17_Chr2g0321591 31.884 207 111 6 5 204 10 193 9.85e-24 94.0
Msa0933610 MtrunA17_Chr2g0321601 40.323 124 69 3 82 204 73 192 4.41e-23 92.4
Msa0933610 MtrunA17_Chr2g0292881 71.930 57 16 0 93 149 1 57 6.23e-23 87.4
Msa0933610 MtrunA17_Chr3g0084551 32.642 193 116 6 18 208 14 194 2.32e-18 80.5
Msa0933610 MtrunA17_Chr3g0084501 43.023 86 46 2 26 110 22 105 4.26e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933610 AT5G39150.1 65.865 208 67 3 1 204 1 208 5.65e-90 264
Msa0933610 AT5G39180.1 65.865 208 67 3 1 204 1 208 8.65e-90 263
Msa0933610 AT5G39110.1 66.176 204 66 2 4 204 6 209 1.34e-89 263
Msa0933610 AT5G39120.1 65.865 208 67 3 1 204 1 208 1.49e-89 263
Msa0933610 AT5G38940.1 66.327 196 59 2 22 210 26 221 6.61e-87 256
Msa0933610 AT5G38940.2 66.327 196 59 2 22 210 50 245 8.47e-87 257
Msa0933610 AT3G05950.1 69.036 197 56 4 12 204 15 210 3.77e-86 254
Msa0933610 AT5G38930.1 66.667 198 59 2 20 210 24 221 4.01e-86 254
Msa0933610 AT5G39160.1 66.332 199 58 4 20 210 22 219 6.93e-86 253
Msa0933610 AT5G39190.1 66.332 199 58 4 20 210 22 219 1.31e-85 253
Msa0933610 AT5G39130.1 62.212 217 72 5 2 210 5 219 3.94e-85 251
Msa0933610 AT5G38960.1 64.179 201 64 3 18 210 22 222 4.56e-84 249
Msa0933610 AT5G38910.1 62.617 214 68 4 4 210 11 219 1.10e-83 248
Msa0933610 AT3G04200.1 63.902 205 67 4 3 204 11 211 1.16e-82 245
Msa0933610 AT4G14630.1 60.930 215 71 4 4 210 13 222 4.39e-82 244
Msa0933610 AT5G39160.3 63.819 199 59 4 20 210 22 215 5.54e-81 241
Msa0933610 AT3G04190.1 61.140 193 71 3 15 204 19 210 3.35e-73 221
Msa0933610 AT5G39190.2 58.173 208 59 4 10 210 11 197 2.46e-71 216
Msa0933610 AT3G04150.1 57.820 211 81 5 1 204 1 210 3.76e-71 216
Msa0933610 AT5G39160.2 58.883 197 54 3 20 210 22 197 6.51e-71 214
Msa0933610 AT3G04180.1 57.513 193 78 3 15 204 19 210 1.92e-69 212
Msa0933610 AT3G04150.2 54.260 223 83 5 1 204 1 223 6.22e-69 211
Msa0933610 AT3G04170.1 57.360 197 76 5 12 204 15 207 3.20e-67 206
Msa0933610 AT1G02335.1 47.549 204 100 4 2 203 5 203 3.65e-57 180
Msa0933610 AT5G38910.2 50.467 214 57 5 4 210 11 182 5.72e-57 179
Msa0933610 AT3G05930.1 49.029 206 95 5 1 201 1 201 5.23e-56 177
Msa0933610 AT1G09560.1 53.005 183 80 3 22 202 24 202 1.14e-55 177
Msa0933610 AT3G62020.1 50.000 200 93 4 7 203 8 203 3.00e-55 176
Msa0933610 AT5G26700.1 50.538 186 79 5 26 207 25 201 7.95e-53 169
Msa0933610 AT1G18970.1 47.980 198 90 5 22 212 29 220 1.94e-52 168
Msa0933610 AT1G18980.1 49.198 187 87 4 22 206 29 209 1.86e-51 166
Msa0933610 AT3G62020.2 51.786 168 76 3 39 203 9 174 5.98e-48 156
Msa0933610 AT1G10460.1 43.617 188 99 5 22 204 19 204 5.27e-47 154
Msa0933610 AT3G10080.1 41.148 209 105 6 11 210 20 219 1.06e-44 149
Msa0933610 AT3G10080.2 41.148 209 105 6 11 210 91 290 6.17e-44 149
Msa0933610 AT5G20630.1 40.838 191 101 4 1 189 3 183 1.81e-39 135
Msa0933610 AT5G61750.1 44.048 168 89 3 22 187 19 183 1.03e-37 130
Msa0933610 AT1G74820.1 38.614 202 112 5 6 205 24 215 2.83e-34 122
Msa0933610 AT1G72610.1 41.566 166 91 3 26 189 19 180 9.85e-34 120
Msa0933610 AT5G38950.1 67.213 61 20 0 144 204 2 62 2.68e-20 82.4

Find 48 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.057045 6_3:+2123463 Msa0933610:CDS
TAGTGATTACACCTGGATTT+TGG 0.253401 6_3:-2123444 None:intergenic
TTCACTTTCAATTGAATGTT+GGG 0.325573 6_3:+2123386 Msa0933610:CDS
AGTATACATACCACCATTCT+TGG 0.333982 6_3:-2122851 None:intergenic
CTTGTTTGTGACTGCCTGCT+TGG 0.350107 6_3:+2122759 Msa0933610:CDS
TCATTTGCTGTAGCATGCTT+TGG 0.351870 6_3:-2123073 None:intergenic
ATACTAGGACTAAACACTTT+AGG 0.375557 6_3:+2123172 Msa0933610:CDS
TTGGAGGGTACTCTTTATGT+TGG 0.391607 6_3:+2123280 Msa0933610:CDS
ATTGTCCACTTGGAAAGCTT+TGG 0.404523 6_3:-2123518 None:intergenic
GGAAATGCAGTTGTCATTGC+TGG 0.408325 6_3:+2123412 Msa0933610:CDS
TAGTCCTAGTATCTCATTAA+CGG 0.408621 6_3:-2123161 None:intergenic
TGAAAGTGAATGAGGCCAAT+TGG 0.419001 6_3:-2123373 None:intergenic
AGTATCTCATTAACGGTAAC+CGG 0.427049 6_3:-2123154 None:intergenic
TGGAGGGTACTCTTTATGTT+GGG 0.430272 6_3:+2123281 Msa0933610:CDS
ATTCACTTTCAATTGAATGT+TGG 0.434824 6_3:+2123385 Msa0933610:CDS
TTTCAATTGAATGTTGGGTA+TGG 0.435827 6_3:+2123391 Msa0933610:CDS
GATGTCTTCGTGTTTCCAAT+TGG 0.447280 6_3:+2123358 Msa0933610:CDS
CTATTGCTAATGCTGTATTT+GGG 0.459960 6_3:+2123464 Msa0933610:CDS
TTCTTCTACTCGGTGAAAGA+AGG 0.467010 6_3:+2123097 Msa0933610:CDS
ATAAGAATCTCAGTGGCTCT+AGG 0.470121 6_3:-2123253 None:intergenic
TGAGATTCTTATCGTGTTGG+AGG 0.479548 6_3:+2123264 Msa0933610:CDS
TCGCATTGACTTCGCTGCTA+GGG 0.481033 6_3:+2123207 Msa0933610:CDS
CTCGCATTGACTTCGCTGCT+AGG 0.500918 6_3:+2123206 Msa0933610:CDS
CAAAAGTCTTGCAAAGGGCT+AGG 0.509807 6_3:-2122811 None:intergenic
ACAAGATGCTAAAGCCAAGC+AGG 0.517868 6_3:-2122773 None:intergenic
TTGCAAAGGGCTAGGATCAA+AGG 0.525409 6_3:-2122803 None:intergenic
CACTGAGATTCTTATCGTGT+TGG 0.542092 6_3:+2123261 Msa0933610:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.548107 6_3:-2123241 None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG 0.548530 6_3:-2123252 None:intergenic
CGCATTGACTTCGCTGCTAG+GGG 0.548623 6_3:+2123208 Msa0933610:CDS
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6_3:+2123433 Msa0933610:CDS
CATTCAATTGAAAGTGAATG+AGG 0.551568 6_3:-2123381 None:intergenic
AGCAAATGATTTCTTCTACT+CGG 0.553402 6_3:+2123087 Msa0933610:CDS
GCCACACAAAAGTCTTGCAA+AGG 0.561294 6_3:-2122817 None:intergenic
GTTACCGTTAATGAGATACT+AGG 0.571440 6_3:+2123157 Msa0933610:CDS
CCACACAAAAGTCTTGCAAA+GGG 0.572371 6_3:-2122816 None:intergenic
TGTGAATGGCAAATTCTGCA+AGG 0.584711 6_3:+2123048 Msa0933610:CDS
GAGATTCTTATCGTGTTGGA+GGG 0.612927 6_3:+2123265 Msa0933610:CDS
TTAGCAATAGTGATTACACC+TGG 0.624375 6_3:-2123451 None:intergenic
ATCAATGATACCAAGAATGG+TGG 0.631783 6_3:+2122841 Msa0933610:CDS
AGGGCTAGGATCAAAGGCAA+AGG 0.638564 6_3:-2122797 None:intergenic
GCTATCAATGATACCAAGAA+TGG 0.640005 6_3:+2122838 Msa0933610:CDS
GGAAATACATCAAATCCACT+TGG 0.640192 6_3:+2123118 Msa0933610:CDS
ATCACAAAAGTACTCAACAA+AGG 0.644517 6_3:+2123334 Msa0933610:CDS
TCTCACCAAAGCTTTCCAAG+TGG 0.665947 6_3:+2123513 Msa0933610:CDS
ACTTGGTTCAAAAGTGACAC+CGG 0.669513 6_3:+2123135 Msa0933610:CDS
GCTCTAGGGTGAGTATGTGG+AGG 0.673911 6_3:-2123238 None:intergenic
CAACACGATAAGAATCTCAG+TGG 0.757588 6_3:-2123260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATACGTATATAAG+TGG + chr6_3:2122982-2123001 Msa0933610:intron 15.0%
!! TTAATATATACGTATATAAG+TGG + chr6_3:2122982-2123001 Msa0933610:intron 15.0%
!! TACGTATATATTAATGTTGT+CGG - chr6_3:2122976-2122995 None:intergenic 20.0%
!! TACGTATATATTAATGTTGT+CGG - chr6_3:2122976-2122995 None:intergenic 20.0%
! TCATAGTTCAATCAGTTTAA+CGG - chr6_3:2122923-2122942 None:intergenic 25.0%
! ATTCACTTTCAATTGAATGT+TGG + chr6_3:2123385-2123404 Msa0933610:CDS 25.0%
! TTCACTTTCAATTGAATGTT+GGG + chr6_3:2123386-2123405 Msa0933610:CDS 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG - chr6_3:2123496-2123515 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG + chr6_3:2123536-2123555 Msa0933610:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG + chr6_3:2123537-2123556 Msa0933610:CDS 25.0%
! TCATAGTTCAATCAGTTTAA+CGG - chr6_3:2122923-2122942 None:intergenic 25.0%
! ATTCACTTTCAATTGAATGT+TGG + chr6_3:2123385-2123404 Msa0933610:CDS 25.0%
! TTCACTTTCAATTGAATGTT+GGG + chr6_3:2123386-2123405 Msa0933610:CDS 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG - chr6_3:2123496-2123515 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG + chr6_3:2123536-2123555 Msa0933610:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG + chr6_3:2123537-2123556 Msa0933610:CDS 25.0%
CATAGTTCAATCAGTTTAAC+GGG - chr6_3:2122922-2122941 None:intergenic 30.0%
ACTATGATACAAAAGTCTCA+CGG + chr6_3:2122936-2122955 Msa0933610:intron 30.0%
AGCAAATGATTTCTTCTACT+CGG + chr6_3:2123087-2123106 Msa0933610:CDS 30.0%
TAGTCCTAGTATCTCATTAA+CGG - chr6_3:2123164-2123183 None:intergenic 30.0%
ATACTAGGACTAAACACTTT+AGG + chr6_3:2123172-2123191 Msa0933610:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG + chr6_3:2123334-2123353 Msa0933610:CDS 30.0%
CATTCAATTGAAAGTGAATG+AGG - chr6_3:2123384-2123403 None:intergenic 30.0%
TTTCAATTGAATGTTGGGTA+TGG + chr6_3:2123391-2123410 Msa0933610:CDS 30.0%
ACTATTGCTAATGCTGTATT+TGG + chr6_3:2123463-2123482 Msa0933610:CDS 30.0%
CTATTGCTAATGCTGTATTT+GGG + chr6_3:2123464-2123483 Msa0933610:CDS 30.0%
CATAGTTCAATCAGTTTAAC+GGG - chr6_3:2122922-2122941 None:intergenic 30.0%
ACTATGATACAAAAGTCTCA+CGG + chr6_3:2122936-2122955 Msa0933610:intron 30.0%
AGCAAATGATTTCTTCTACT+CGG + chr6_3:2123087-2123106 Msa0933610:CDS 30.0%
TAGTCCTAGTATCTCATTAA+CGG - chr6_3:2123164-2123183 None:intergenic 30.0%
ATACTAGGACTAAACACTTT+AGG + chr6_3:2123172-2123191 Msa0933610:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG + chr6_3:2123334-2123353 Msa0933610:CDS 30.0%
CATTCAATTGAAAGTGAATG+AGG - chr6_3:2123384-2123403 None:intergenic 30.0%
TTTCAATTGAATGTTGGGTA+TGG + chr6_3:2123391-2123410 Msa0933610:CDS 30.0%
ACTATTGCTAATGCTGTATT+TGG + chr6_3:2123463-2123482 Msa0933610:CDS 30.0%
CTATTGCTAATGCTGTATTT+GGG + chr6_3:2123464-2123483 Msa0933610:CDS 30.0%
GCTATCAATGATACCAAGAA+TGG + chr6_3:2122838-2122857 Msa0933610:CDS 35.0%
ATCAATGATACCAAGAATGG+TGG + chr6_3:2122841-2122860 Msa0933610:CDS 35.0%
AGTATACATACCACCATTCT+TGG - chr6_3:2122854-2122873 None:intergenic 35.0%
! TGTTGTGCAGTTTTTGTGAA+TGG + chr6_3:2123034-2123053 Msa0933610:intron 35.0%
GGAAATACATCAAATCCACT+TGG + chr6_3:2123118-2123137 Msa0933610:CDS 35.0%
AGTATCTCATTAACGGTAAC+CGG - chr6_3:2123157-2123176 None:intergenic 35.0%
GTTACCGTTAATGAGATACT+AGG + chr6_3:2123157-2123176 Msa0933610:CDS 35.0%
! TGAGTACTTTTGTGATGAGA+CGG - chr6_3:2123330-2123349 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG - chr6_3:2123447-2123466 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG - chr6_3:2123454-2123473 None:intergenic 35.0%
!! GTTTTTGAAGATTGTCCACT+TGG - chr6_3:2123531-2123550 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG + chr6_3:2123540-2123559 Msa0933610:CDS 35.0%
GCTATCAATGATACCAAGAA+TGG + chr6_3:2122838-2122857 Msa0933610:CDS 35.0%
ATCAATGATACCAAGAATGG+TGG + chr6_3:2122841-2122860 Msa0933610:CDS 35.0%
AGTATACATACCACCATTCT+TGG - chr6_3:2122854-2122873 None:intergenic 35.0%
! TGTTGTGCAGTTTTTGTGAA+TGG + chr6_3:2123034-2123053 Msa0933610:intron 35.0%
GGAAATACATCAAATCCACT+TGG + chr6_3:2123118-2123137 Msa0933610:CDS 35.0%
AGTATCTCATTAACGGTAAC+CGG - chr6_3:2123157-2123176 None:intergenic 35.0%
GTTACCGTTAATGAGATACT+AGG + chr6_3:2123157-2123176 Msa0933610:CDS 35.0%
! TGAGTACTTTTGTGATGAGA+CGG - chr6_3:2123330-2123349 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG - chr6_3:2123447-2123466 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG - chr6_3:2123454-2123473 None:intergenic 35.0%
!! GTTTTTGAAGATTGTCCACT+TGG - chr6_3:2123531-2123550 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG + chr6_3:2123540-2123559 Msa0933610:CDS 35.0%
CCACACAAAAGTCTTGCAAA+GGG - chr6_3:2122819-2122838 None:intergenic 40.0%
TGTGAATGGCAAATTCTGCA+AGG + chr6_3:2123048-2123067 Msa0933610:CDS 40.0%
!! TCATTTGCTGTAGCATGCTT+TGG - chr6_3:2123076-2123095 None:intergenic 40.0%
! TTCTTCTACTCGGTGAAAGA+AGG + chr6_3:2123097-2123116 Msa0933610:CDS 40.0%
ACTTGGTTCAAAAGTGACAC+CGG + chr6_3:2123135-2123154 Msa0933610:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG - chr6_3:2123255-2123274 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG - chr6_3:2123256-2123275 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG - chr6_3:2123263-2123282 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG + chr6_3:2123261-2123280 Msa0933610:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG + chr6_3:2123264-2123283 Msa0933610:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG + chr6_3:2123265-2123284 Msa0933610:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG + chr6_3:2123280-2123299 Msa0933610:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG + chr6_3:2123281-2123300 Msa0933610:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG - chr6_3:2123322-2123341 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG + chr6_3:2123358-2123377 Msa0933610:CDS 40.0%
TGAAAGTGAATGAGGCCAAT+TGG - chr6_3:2123376-2123395 None:intergenic 40.0%
ATTGTCCACTTGGAAAGCTT+TGG - chr6_3:2123521-2123540 None:intergenic 40.0%
CCACACAAAAGTCTTGCAAA+GGG - chr6_3:2122819-2122838 None:intergenic 40.0%
TGTGAATGGCAAATTCTGCA+AGG + chr6_3:2123048-2123067 Msa0933610:CDS 40.0%
!! TCATTTGCTGTAGCATGCTT+TGG - chr6_3:2123076-2123095 None:intergenic 40.0%
! TTCTTCTACTCGGTGAAAGA+AGG + chr6_3:2123097-2123116 Msa0933610:CDS 40.0%
ACTTGGTTCAAAAGTGACAC+CGG + chr6_3:2123135-2123154 Msa0933610:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG - chr6_3:2123255-2123274 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG - chr6_3:2123256-2123275 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG - chr6_3:2123263-2123282 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG + chr6_3:2123261-2123280 Msa0933610:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG + chr6_3:2123264-2123283 Msa0933610:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG + chr6_3:2123265-2123284 Msa0933610:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG + chr6_3:2123280-2123299 Msa0933610:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG + chr6_3:2123281-2123300 Msa0933610:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG - chr6_3:2123322-2123341 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG + chr6_3:2123358-2123377 Msa0933610:CDS 40.0%
TGAAAGTGAATGAGGCCAAT+TGG - chr6_3:2123376-2123395 None:intergenic 40.0%
ATTGTCCACTTGGAAAGCTT+TGG - chr6_3:2123521-2123540 None:intergenic 40.0%
ACAAGATGCTAAAGCCAAGC+AGG - chr6_3:2122776-2122795 None:intergenic 45.0%
TTGCAAAGGGCTAGGATCAA+AGG - chr6_3:2122806-2122825 None:intergenic 45.0%
CAAAAGTCTTGCAAAGGGCT+AGG - chr6_3:2122814-2122833 None:intergenic 45.0%
! CCCTTTGCAAGACTTTTGTG+TGG + chr6_3:2122816-2122835 Msa0933610:CDS 45.0%
GCCACACAAAAGTCTTGCAA+AGG - chr6_3:2122820-2122839 None:intergenic 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG - chr6_3:2123136-2123155 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG + chr6_3:2123412-2123431 Msa0933610:CDS 45.0%
TCTCACCAAAGCTTTCCAAG+TGG + chr6_3:2123513-2123532 Msa0933610:CDS 45.0%
ACAAGATGCTAAAGCCAAGC+AGG - chr6_3:2122776-2122795 None:intergenic 45.0%
TTGCAAAGGGCTAGGATCAA+AGG - chr6_3:2122806-2122825 None:intergenic 45.0%
CAAAAGTCTTGCAAAGGGCT+AGG - chr6_3:2122814-2122833 None:intergenic 45.0%
! CCCTTTGCAAGACTTTTGTG+TGG + chr6_3:2122816-2122835 Msa0933610:CDS 45.0%
GCCACACAAAAGTCTTGCAA+AGG - chr6_3:2122820-2122839 None:intergenic 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG - chr6_3:2123136-2123155 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG + chr6_3:2123412-2123431 Msa0933610:CDS 45.0%
TCTCACCAAAGCTTTCCAAG+TGG + chr6_3:2123513-2123532 Msa0933610:CDS 45.0%
CTTGTTTGTGACTGCCTGCT+TGG + chr6_3:2122759-2122778 Msa0933610:CDS 50.0%
AGGGCTAGGATCAAAGGCAA+AGG - chr6_3:2122800-2122819 None:intergenic 50.0%
!! TCGCATTGACTTCGCTGCTA+GGG + chr6_3:2123207-2123226 Msa0933610:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG + chr6_3:2123433-2123452 Msa0933610:CDS 50.0%
CTTGTTTGTGACTGCCTGCT+TGG + chr6_3:2122759-2122778 Msa0933610:CDS 50.0%
AGGGCTAGGATCAAAGGCAA+AGG - chr6_3:2122800-2122819 None:intergenic 50.0%
!! TCGCATTGACTTCGCTGCTA+GGG + chr6_3:2123207-2123226 Msa0933610:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG + chr6_3:2123433-2123452 Msa0933610:CDS 50.0%
!! CTCGCATTGACTTCGCTGCT+AGG + chr6_3:2123206-2123225 Msa0933610:CDS 55.0%
!! CGCATTGACTTCGCTGCTAG+GGG + chr6_3:2123208-2123227 Msa0933610:CDS 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG - chr6_3:2123241-2123260 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG - chr6_3:2123244-2123263 None:intergenic 55.0%
!! CTCGCATTGACTTCGCTGCT+AGG + chr6_3:2123206-2123225 Msa0933610:CDS 55.0%
!! CGCATTGACTTCGCTGCTAG+GGG + chr6_3:2123208-2123227 Msa0933610:CDS 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG - chr6_3:2123241-2123260 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG - chr6_3:2123244-2123263 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 2122745 2123573 2122745 ID=Msa0933610;Name=Msa0933610
chr6_3 mRNA 2122745 2123573 2122745 ID=Msa0933610-mRNA-1;Parent=Msa0933610;Name=Msa0933610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|215
chr6_3 exon 2122745 2122862 2122745 ID=Msa0933610-mRNA-1:exon:845;Parent=Msa0933610-mRNA-1
chr6_3 exon 2123044 2123573 2123044 ID=Msa0933610-mRNA-1:exon:846;Parent=Msa0933610-mRNA-1
chr6_3 CDS 2122745 2122862 2122745 ID=Msa0933610-mRNA-1:cds;Parent=Msa0933610-mRNA-1
chr6_3 CDS 2123044 2123573 2123044 ID=Msa0933610-mRNA-1:cds;Parent=Msa0933610-mRNA-1
Gene Sequence

>Msa0933610

ATGAAGACTTCAATCTTGTTTGTGACTGCCTGCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCTAGCCCTTTGCAAGACTTTTGTGTGGCTATCAATGATACCAAGAATGGTGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCATGCTACAGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACACCGGTTACCGTTAATGAGATACTAGGACTAAACACTTTAGGTATCTCTCTTGCTCGCATTGACTTCGCTGCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCAGTTGTCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG

Protein sequence

>Msa0933610

MKTSILFVTACLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKHATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFAARGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVVIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNLQKQFWVDNN*