Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165550 | XP_024627015.1 | 95.782 | 569 | 19 | 1 | 1 | 569 | 1 | 564 | 0.0 | 1093 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165550 | A0A396HDQ3 | 95.782 | 569 | 19 | 1 | 1 | 569 | 1 | 564 | 0.0 | 1093 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010770 | Msa1165550 | 0.808816 | 2.572028e-50 | -8.615850e-47 |
| Msa0030300 | Msa1165550 | 0.802904 | 4.496365e-49 | -8.615850e-47 |
| Msa0041690 | Msa1165550 | 0.800993 | 1.110312e-48 | -8.615850e-47 |
| Msa0077900 | Msa1165550 | 0.806628 | 7.500451e-50 | -8.615850e-47 |
| Msa0096580 | Msa1165550 | 0.819254 | 1.279068e-52 | -8.615850e-47 |
| Msa0097950 | Msa1165550 | 0.815905 | 7.274425e-52 | -8.615850e-47 |
| Msa0108870 | Msa1165550 | 0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0640940 | Msa1165550 | 0.802870 | 4.569688e-49 | -8.615850e-47 |
| Msa0679360 | Msa1165550 | 0.801749 | 7.774709e-49 | -8.615850e-47 |
| Msa0744100 | Msa1165550 | 0.808236 | 3.419409e-50 | -8.615850e-47 |
| Msa0788120 | Msa1165550 | 0.806051 | 9.923325e-50 | -8.615850e-47 |
| Msa0825270 | Msa1165550 | 0.811904 | 5.544079e-51 | -8.615850e-47 |
| Msa0126880 | Msa1165550 | 0.801919 | 7.174156e-49 | -8.615850e-47 |
| Msa0146080 | Msa1165550 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0171980 | Msa1165550 | 0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa0237200 | Msa1165550 | 0.803026 | 4.242409e-49 | -8.615850e-47 |
| Msa0238030 | Msa1165550 | 0.808819 | 2.568098e-50 | -8.615850e-47 |
| Msa0377440 | Msa1165550 | 0.802895 | 4.515263e-49 | -8.615850e-47 |
| Msa0384670 | Msa1165550 | 0.821966 | 3.048543e-53 | -8.615850e-47 |
| Msa0434570 | Msa1165550 | 0.819325 | 1.232613e-52 | -8.615850e-47 |
| Msa0434770 | Msa1165550 | 0.815550 | 8.728841e-52 | -8.615850e-47 |
| Msa0443430 | Msa1165550 | 0.813730 | 2.207526e-51 | -8.615850e-47 |
| Msa0474700 | Msa1165550 | 0.824648 | 7.201781e-54 | -8.615850e-47 |
| Msa0478580 | Msa1165550 | 0.831045 | 2.084691e-55 | -8.615850e-47 |
| Msa0981430 | Msa1165550 | 0.822545 | 2.236940e-53 | -8.615850e-47 |
| Msa0247060 | Msa1165550 | 0.808588 | 2.877330e-50 | -8.615850e-47 |
| Msa0324240 | Msa1165550 | 0.800550 | 1.367502e-48 | -8.615850e-47 |
| Msa0342290 | Msa1165550 | 0.810219 | 1.285310e-50 | -8.615850e-47 |
| Msa1127430 | Msa1165550 | 0.812730 | 3.659666e-51 | -8.615850e-47 |
| Msa1165550 | Msa1205480 | 0.806950 | 6.411462e-50 | -8.615850e-47 |
| Msa1165550 | Msa1278900 | 0.810850 | 9.390734e-51 | -8.615850e-47 |
| Msa1165550 | Msa1320820 | 0.823759 | 1.164996e-53 | -8.615850e-47 |
| Msa1165550 | Msa1336040 | 0.816687 | 4.862701e-52 | -8.615850e-47 |
| Msa1165550 | Msa1344310 | 0.804139 | 2.492797e-49 | -8.615850e-47 |
| Msa1165550 | Msa1357080 | 0.801303 | 9.595978e-49 | -8.615850e-47 |
| Msa1165550 | Msa1359560 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa1165550 | Msa1432480 | 0.805481 | 1.307672e-49 | -8.615850e-47 |
| Msa0489660 | Msa1165550 | 0.809383 | 1.944576e-50 | -8.615850e-47 |
| Msa0514610 | Msa1165550 | 0.806947 | 6.423271e-50 | -8.615850e-47 |
| Msa0550570 | Msa1165550 | 0.822827 | 1.922875e-53 | -8.615850e-47 |
| Msa0555640 | Msa1165550 | 0.806129 | 9.556596e-50 | -8.615850e-47 |
| Msa0580180 | Msa1165550 | 0.802366 | 5.804961e-49 | -8.615850e-47 |
| Msa0588220 | Msa1165550 | 0.816215 | 6.204251e-52 | -8.615850e-47 |
| Msa0866400 | Msa1165550 | 0.801629 | 8.225861e-49 | -8.615850e-47 |
| Msa0869010 | Msa1165550 | 0.802141 | 6.458776e-49 | -8.615850e-47 |
| Msa0899350 | Msa1165550 | 0.813762 | 2.172521e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165550 | MtrunA17_Chr7g0270071 | 95.782 | 569 | 19 | 1 | 1 | 569 | 1 | 564 | 0.0 | 1093 |
| Msa1165550 | MtrunA17_Chr4g0068311 | 38.498 | 426 | 193 | 13 | 144 | 566 | 52 | 411 | 6.71e-60 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165550 | AT2G47350.1 | 43.924 | 576 | 216 | 21 | 1 | 564 | 1 | 481 | 9.13e-112 | 342 |
| Msa1165550 | AT1G56460.1 | 40.722 | 582 | 246 | 17 | 1 | 563 | 1 | 502 | 4.98e-88 | 281 |
| Msa1165550 | AT1G56460.2 | 39.189 | 592 | 271 | 16 | 1 | 563 | 1 | 532 | 9.83e-84 | 271 |
| Msa1165550 | AT3G06660.1 | 43.384 | 461 | 186 | 17 | 109 | 564 | 29 | 419 | 1.18e-65 | 220 |
| Msa1165550 | AT1G56460.3 | 38.806 | 536 | 234 | 16 | 1 | 517 | 1 | 461 | 4.08e-61 | 211 |
| Msa1165550 | AT2G47350.2 | 38.562 | 459 | 181 | 19 | 1 | 447 | 1 | 370 | 3.65e-55 | 191 |
Find 154 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTAGATGTGTTCTTTA+TGG | 0.102442 | 7_4:-57500157 | None:intergenic |
| TTCGAAAAGCTCTCGTTTAT+CGG | 0.231676 | 7_4:+57499421 | Msa1165550:CDS |
| CTCTCTGATGATTGGATATA+TGG | 0.263245 | 7_4:-57498595 | None:intergenic |
| ACTCTCTAGCGTCTCTAATA+TGG | 0.265515 | 7_4:+57500356 | Msa1165550:CDS |
| GATTTCAAAAGGGGCGGATT+TGG | 0.281044 | 7_4:+57500099 | Msa1165550:CDS |
| GTGTTCTTGCTCCTGCTAAT+TGG | 0.295171 | 7_4:+57499180 | Msa1165550:CDS |
| TTTGAATCCCGGTATTTATA+CGG | 0.300042 | 7_4:-57501803 | None:intergenic |
| ACAGAATTACCTGTTGCTTT+TGG | 0.329755 | 7_4:-57499460 | None:intergenic |
| GAATCCTGAGAGTACAAGTT+TGG | 0.340010 | 7_4:+57499274 | Msa1165550:CDS |
| TCTGCATCTAACAGTGCTTC+AGG | 0.354010 | 7_4:+57499386 | Msa1165550:CDS |
| AAACCTGTGCCAGATCTTCT+TGG | 0.361784 | 7_4:-57501010 | None:intergenic |
| TATGAGGATGAAGTGGAATC+AGG | 0.367393 | 7_4:+57500456 | Msa1165550:CDS |
| GCCGTGGCCTGCGCGATGGT+TGG | 0.370228 | 7_4:-57498935 | None:intergenic |
| CCTTCCACGGAAGGCCTTTG+AGG | 0.388383 | 7_4:-57500077 | None:intergenic |
| AATCCTGAGAGTACAAGTTT+GGG | 0.390497 | 7_4:+57499275 | Msa1165550:CDS |
| GGGCAGCTTCAAGATGGATT+GGG | 0.397967 | 7_4:+57499296 | Msa1165550:CDS |
| GACTCTTACAACGCGTCAAC+GGG | 0.398062 | 7_4:+57500563 | Msa1165550:CDS |
| AAAGGGGCGGATTTGGTGTC+GGG | 0.399013 | 7_4:+57500106 | Msa1165550:CDS |
| CGTCAACGGGCCCTTCAATC+AGG | 0.406481 | 7_4:+57500576 | Msa1165550:CDS |
| TGGCAGTTTGTGGCGGTTGA+CGG | 0.410681 | 7_4:-57498485 | None:intergenic |
| ATGGATTGGGGAGTGAGAAC+AGG | 0.411464 | 7_4:+57499309 | Msa1165550:CDS |
| TTAGGATCTACCCGGTTTGA+TGG | 0.419286 | 7_4:+57498882 | Msa1165550:CDS |
| TGAGGAATCTCTCTGATGAT+TGG | 0.426802 | 7_4:-57498603 | None:intergenic |
| TTCCGTGGAAGGATTTCAAA+AGG | 0.429035 | 7_4:+57500088 | Msa1165550:CDS |
| TTGTGTTACTCAACCATCTT+CGG | 0.429757 | 7_4:+57499115 | Msa1165550:CDS |
| AAAGAAGCGCCAAGAAGATC+TGG | 0.434910 | 7_4:+57501001 | Msa1165550:CDS |
| GGCTTGGTGTTTATAATCGC+AGG | 0.439814 | 7_4:-57501214 | None:intergenic |
| ATCATCATCAACACCTCCTT+CGG | 0.442031 | 7_4:+57499004 | Msa1165550:CDS |
| TCCATCCAGTACACGTCGCT+TGG | 0.442077 | 7_4:-57500223 | None:intergenic |
| CGACATTCAGGATCAGGAAT+AGG | 0.442335 | 7_4:-57498969 | None:intergenic |
| AGTACCCAAGCGACGTGTAC+TGG | 0.443147 | 7_4:+57500218 | Msa1165550:CDS |
| TCAGGAATAGGCTGTGAATC+AGG | 0.447013 | 7_4:-57498957 | None:intergenic |
| AGCGGCGCGATTAATAATAT+AGG | 0.449054 | 7_4:+57498639 | Msa1165550:five_prime_UTR |
| AGGCATCTTTGCCTGATTGA+AGG | 0.450821 | 7_4:-57500587 | None:intergenic |
| CCACCTCGCGAGATGTGTGC+TGG | 0.451336 | 7_4:+57501764 | Msa1165550:CDS |
| ACTCTCTTGCTCTTACGAAC+AGG | 0.456564 | 7_4:-57500198 | None:intergenic |
| AAATCACGACATTCAGGATC+AGG | 0.456776 | 7_4:-57498975 | None:intergenic |
| CATTGCTGATACCATCAAAC+CGG | 0.457258 | 7_4:-57498893 | None:intergenic |
| GCTGTCCAGGCGAAGACTAC+TGG | 0.457917 | 7_4:+57501863 | Msa1165550:CDS |
| AGATATGTGATAGGTCCTAC+TGG | 0.459612 | 7_4:+57501157 | Msa1165550:CDS |
| GTACAAATCCGTATAAATAC+CGG | 0.462269 | 7_4:+57501795 | Msa1165550:CDS |
| CTTGCTCCTGCTAATTGGAA+AGG | 0.463533 | 7_4:+57499185 | Msa1165550:CDS |
| CTAGAACCTTTCCAATTAGC+AGG | 0.466538 | 7_4:-57499191 | None:intergenic |
| GGTGTCAAACTGAACTCAAC+TGG | 0.467231 | 7_4:+57498439 | Msa1165550:five_prime_UTR |
| CGCAGGGATCCCCATTTCCT+CGG | 0.468162 | 7_4:-57501197 | None:intergenic |
| TACTCACTTCTAGGTGGGGC+AGG | 0.469584 | 7_4:-57500654 | None:intergenic |
| GGGGCAGCTTCAAGATGGAT+TGG | 0.471719 | 7_4:+57499295 | Msa1165550:CDS |
| TTATAAACACCAAGCCCATC+AGG | 0.472848 | 7_4:+57501221 | Msa1165550:CDS |
| GAAGTGGAATCAGGGTCTGC+TGG | 0.477090 | 7_4:+57500465 | Msa1165550:CDS |
| GGAATCTGTTGATGTATTGA+TGG | 0.477592 | 7_4:+57500524 | Msa1165550:CDS |
| CCATCCAGTACACGTCGCTT+GGG | 0.482402 | 7_4:-57500222 | None:intergenic |
| GAGTGAGAACAGGGTTAAGA+AGG | 0.483255 | 7_4:+57499319 | Msa1165550:CDS |
| CCTGGACAGCATTGTAGCAT+TGG | 0.490682 | 7_4:-57501850 | None:intergenic |
| AAAAGGGGCGGATTTGGTGT+CGG | 0.491074 | 7_4:+57500105 | Msa1165550:CDS |
| GGCATCTTTGCCTGATTGAA+GGG | 0.492951 | 7_4:-57500586 | None:intergenic |
| TCTAACAGTGCTTCAGGAAG+CGG | 0.493879 | 7_4:+57499392 | Msa1165550:CDS |
| TGACTCTTACAACGCGTCAA+CGG | 0.495079 | 7_4:+57500562 | Msa1165550:CDS |
| GCAATGCTGTGAGGAGGAAG+AGG | 0.500162 | 7_4:+57498910 | Msa1165550:CDS |
| TCATCAAGGTCAGGCAAAGA+TGG | 0.509231 | 7_4:+57500390 | Msa1165550:CDS |
| GCTTGAAGATACAGATTATG+AGG | 0.510025 | 7_4:+57500440 | Msa1165550:CDS |
| TTATACGGATTTGTACATGA+TGG | 0.510873 | 7_4:-57501788 | None:intergenic |
| GACAGCAGCTCCTCTTCTGT+AGG | 0.513010 | 7_4:-57500754 | None:intergenic |
| AATGATGGTTATGATAATAC+TGG | 0.513052 | 7_4:+57499062 | Msa1165550:CDS |
| AAATTTGAAGAAAATTATGA+AGG | 0.513060 | 7_4:-57498527 | None:intergenic |
| AGCTTGATACCTGATGGGCT+TGG | 0.515448 | 7_4:-57501230 | None:intergenic |
| ATGTATTGATGGACACTAAG+AGG | 0.516625 | 7_4:+57500535 | Msa1165550:CDS |
| TGCCCCAAACTTGTACTCTC+AGG | 0.517224 | 7_4:-57499278 | None:intergenic |
| CCTCAAAGGCCTTCCGTGGA+AGG | 0.517260 | 7_4:+57500077 | Msa1165550:CDS |
| GAGACTGCAAAGAGGAACCT+TGG | 0.517832 | 7_4:-57501828 | None:intergenic |
| CCAATGCTACAATGCTGTCC+AGG | 0.518125 | 7_4:+57501850 | Msa1165550:CDS |
| TATGGTGCAACGCAATTATG+TGG | 0.520643 | 7_4:-57498577 | None:intergenic |
| CCGCTTTAAGAGCATAATTG+AGG | 0.520945 | 7_4:-57498621 | None:intergenic |
| TTATCAGCAGCTTCCTCCGA+AGG | 0.522047 | 7_4:-57499020 | None:intergenic |
| TTTACGCCTAATGGCAGCCT+CGG | 0.523022 | 7_4:-57500785 | None:intergenic |
| TTTCACCAGTAGTCTTCGCC+TGG | 0.526878 | 7_4:-57501868 | None:intergenic |
| AATACCATCAGATATGTGAT+AGG | 0.526976 | 7_4:+57501148 | Msa1165550:CDS |
| GCAAGTTGAGAAGGCTGCTA+GGG | 0.527308 | 7_4:+57500810 | Msa1165550:CDS |
| GCGTAAAATGCAAGTTGAGA+AGG | 0.527598 | 7_4:+57500801 | Msa1165550:CDS |
| AGTTTGGGGCAGCTTCAAGA+TGG | 0.531243 | 7_4:+57499290 | Msa1165550:CDS |
| TCCGTGGAAGGATTTCAAAA+GGG | 0.531352 | 7_4:+57500089 | Msa1165550:CDS |
| GCTAAGAAGCGAGGCCTCAA+AGG | 0.533528 | 7_4:+57500063 | Msa1165550:CDS |
| AATGCTGCCTCATCAAGGTC+AGG | 0.537706 | 7_4:+57500381 | Msa1165550:CDS |
| CAATATACTCACTTCTAGGT+GGG | 0.538644 | 7_4:-57500659 | None:intergenic |
| AGGCCTCGCTTCTTAGCAGA+CGG | 0.539987 | 7_4:-57500057 | None:intergenic |
| AAAAGAGAAGCCTACAGAAG+AGG | 0.541543 | 7_4:+57500744 | Msa1165550:CDS |
| GCAGGGATCCCCATTTCCTC+GGG | 0.542465 | 7_4:-57501196 | None:intergenic |
| GCACACATCTCGCGAGGTGG+AGG | 0.545738 | 7_4:-57501761 | None:intergenic |
| CTCCGTCCACTAGCCGAAGA+TGG | 0.546032 | 7_4:-57499128 | None:intergenic |
| TACAGATTATGAGGATGAAG+TGG | 0.546851 | 7_4:+57500449 | Msa1165550:CDS |
| TGGATTGGGGAGTGAGAACA+GGG | 0.547165 | 7_4:+57499310 | Msa1165550:CDS |
| TACTTGGTCAAGATTCTAGC+AGG | 0.548008 | 7_4:+57500958 | Msa1165550:CDS |
| GGGGCAGGAGGTAATCCATT+GGG | 0.549140 | 7_4:-57500639 | None:intergenic |
| AATAATAGACGGAGCAGTGA+AGG | 0.554175 | 7_4:+57499158 | Msa1165550:CDS |
| AAGAAGGTTAAACTCAAGGT+TGG | 0.559367 | 7_4:+57499335 | Msa1165550:CDS |
| GGGAAGGAAGAGACGTCGAT+GGG | 0.560352 | 7_4:+57500126 | Msa1165550:CDS |
| TGCAAGTTGAGAAGGCTGCT+AGG | 0.561618 | 7_4:+57500809 | Msa1165550:CDS |
| GGTTAAGAAGGTTAAACTCA+AGG | 0.564843 | 7_4:+57499331 | Msa1165550:CDS |
| AGTTTAATCGAGTTTCCCAA+TGG | 0.564889 | 7_4:+57500624 | Msa1165550:CDS |
| AAGGTTAAACTCAAGGTTGG+TGG | 0.565439 | 7_4:+57499338 | Msa1165550:CDS |
| ATGCTGATATATTTGGTGGA+AGG | 0.565650 | 7_4:+57499252 | Msa1165550:CDS |
| AGAGGAGCCAACCATCGCGC+AGG | 0.566100 | 7_4:+57498928 | Msa1165550:CDS |
| GGGCGGATTTGGTGTCGGGA+AGG | 0.568133 | 7_4:+57500110 | Msa1165550:CDS |
| AAGAACACATCTAGCAAGCA+AGG | 0.568724 | 7_4:+57500162 | Msa1165550:CDS |
| GTTTCTAGTGATGAGAATGA+TGG | 0.569956 | 7_4:+57499047 | Msa1165550:CDS |
| ATCTTTGCCTGACCTTGATG+AGG | 0.571415 | 7_4:-57500388 | None:intergenic |
| ATGAGGATGAAGTGGAATCA+GGG | 0.574164 | 7_4:+57500457 | Msa1165550:CDS |
| AGAAAACCGAGGCTGCCATT+AGG | 0.578455 | 7_4:+57500779 | Msa1165550:CDS |
| ACTCAACCATCTTCGGCTAG+TGG | 0.578820 | 7_4:+57499122 | Msa1165550:CDS |
| AGGATAGCTTGATACCTGAT+GGG | 0.578873 | 7_4:-57501235 | None:intergenic |
| TGGACAATGCTGCCTCATCA+AGG | 0.579403 | 7_4:+57500376 | Msa1165550:CDS |
| CCCAAGCGACGTGTACTGGA+TGG | 0.579720 | 7_4:+57500222 | Msa1165550:CDS |
| GGCAGCTTCAAGATGGATTG+GGG | 0.581310 | 7_4:+57499297 | Msa1165550:CDS |
| CCGTGGAAGGATTTCAAAAG+GGG | 0.581364 | 7_4:+57500090 | Msa1165550:CDS |
| AAAAGCTCTCGTTTATCGGA+CGG | 0.583457 | 7_4:+57499425 | Msa1165550:CDS |
| CGGGAAGGAAGAGACGTCGA+TGG | 0.584552 | 7_4:+57500125 | Msa1165550:CDS |
| ATAGGCTGTGAATCAGGCCG+TGG | 0.585794 | 7_4:-57498951 | None:intergenic |
| ATGATGCTGATGATGAGATT+CGG | 0.588715 | 7_4:+57500256 | Msa1165550:CDS |
| AGGACCTATCACATATCTGA+TGG | 0.590688 | 7_4:-57501152 | None:intergenic |
| GAGATGAAGAAGAATCAAGC+AGG | 0.591792 | 7_4:+57500322 | Msa1165550:CDS |
| AGGGTCTGCTGGAGAGCAAG+AGG | 0.591977 | 7_4:+57500476 | Msa1165550:CDS |
| AACCATCTTCGGCTAGTGGA+CGG | 0.593376 | 7_4:+57499126 | Msa1165550:CDS |
| TGGGGCAGGAGGTAATCCAT+TGG | 0.599381 | 7_4:-57500640 | None:intergenic |
| CCTCAATTATGCTCTTAAAG+CGG | 0.602289 | 7_4:+57498621 | Msa1165550:five_prime_UTR |
| TGGAAGGATTTCAAAAGGGG+CGG | 0.606104 | 7_4:+57500093 | Msa1165550:CDS |
| TGTATTGATGGACACTAAGA+GGG | 0.606879 | 7_4:+57500536 | Msa1165550:CDS |
| GCGCCAAGAAGATCTGGCAC+AGG | 0.611439 | 7_4:+57501007 | Msa1165550:CDS |
| GAAGGCTGCTAGGGAATCTG+AGG | 0.612819 | 7_4:+57500819 | Msa1165550:CDS |
| TCAGCAGCTTCCTCCGAAGG+AGG | 0.613860 | 7_4:-57499017 | None:intergenic |
| TACAAATCCGTATAAATACC+GGG | 0.613891 | 7_4:+57501796 | Msa1165550:CDS |
| ATCATCAACACCTCCTTCGG+AGG | 0.618324 | 7_4:+57499007 | Msa1165550:CDS |
| TGGAAGATTTAGGATCTACC+CGG | 0.621580 | 7_4:+57498874 | Msa1165550:CDS |
| GAGGCCTCAAAGGCCTTCCG+TGG | 0.622312 | 7_4:+57500073 | Msa1165550:CDS |
| AATATACTCACTTCTAGGTG+GGG | 0.622996 | 7_4:-57500658 | None:intergenic |
| GAAGGAGGTGTTGATGATGA+TGG | 0.623293 | 7_4:-57499002 | None:intergenic |
| GCTTGGTGTTTATAATCGCA+GGG | 0.625642 | 7_4:-57501213 | None:intergenic |
| ACAATATACTCACTTCTAGG+TGG | 0.626612 | 7_4:-57500660 | None:intergenic |
| TAAACTCGCATTAGATGCAG+AGG | 0.627165 | 7_4:-57500607 | None:intergenic |
| GATATGTGATAGGTCCTACT+GGG | 0.638043 | 7_4:+57501158 | Msa1165550:CDS |
| TCACTTCTAGGTGGGGCAGG+AGG | 0.639183 | 7_4:-57500651 | None:intergenic |
| GGAGTGGTTTAAATAATAGA+CGG | 0.640491 | 7_4:+57499147 | Msa1165550:CDS |
| TCAAACTGAACTCAACTGGT+CGG | 0.642265 | 7_4:+57498443 | Msa1165550:five_prime_UTR |
| GATAGGTCCTACTGGGACAG+TGG | 0.650564 | 7_4:+57501165 | Msa1165550:CDS |
| TCTCCGTCTGCTAAGAAGCG+AGG | 0.650811 | 7_4:+57500054 | Msa1165550:CDS |
| AAAGTCACCACTGTCCCAGT+AGG | 0.661585 | 7_4:-57501172 | None:intergenic |
| AACTGGTCGGAAAACAGAGA+CGG | 0.663481 | 7_4:+57498456 | Msa1165550:five_prime_UTR |
| ATTGCTGATACCATCAAACC+GGG | 0.666876 | 7_4:-57498892 | None:intergenic |
| GTATCAGCAATGCTGTGAGG+AGG | 0.670655 | 7_4:+57498904 | Msa1165550:CDS |
| GGAAGGAAGAGACGTCGATG+GGG | 0.684156 | 7_4:+57500127 | Msa1165550:CDS |
| TCTTCGGCTAGTGGACGGAG+TGG | 0.685197 | 7_4:+57499131 | Msa1165550:CDS |
| ATCCTGAGAGTACAAGTTTG+GGG | 0.689240 | 7_4:+57499276 | Msa1165550:CDS |
| TAGCATTGGAGACTGCAAAG+AGG | 0.707018 | 7_4:-57501836 | None:intergenic |
| AAGATGGTTGAGTAACACAA+TGG | 0.709439 | 7_4:-57499112 | None:intergenic |
| GCTGCTGTCAAAGAAAACCG+AGG | 0.714689 | 7_4:+57500768 | Msa1165550:CDS |
| ATGGTATCAGCAATGCTGTG+AGG | 0.773928 | 7_4:+57498901 | Msa1165550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGAAGAAAATTATGA+AGG | - | chr7_4:57498530-57498549 | None:intergenic | 15.0% |
| !!! | AGAATTTGATTTTTATGTAA+AGG | + | chr7_4:57498813-57498832 | Msa1165550:five_prime_UTR | 15.0% |
| !! | ATATATCATTTATGGTTATT+CGG | + | chr7_4:57499503-57499522 | Msa1165550:intron | 15.0% |
| !!! | GTATTTAGATTTTACTTTTA+TGG | + | chr7_4:57499902-57499921 | Msa1165550:intron | 15.0% |
| !! | TTATAAGTTAAAAAGGATAA+AGG | - | chr7_4:57499974-57499993 | None:intergenic | 15.0% |
| !!! | ATGGATTTTATAAGTTAAAA+AGG | - | chr7_4:57499981-57500000 | None:intergenic | 15.0% |
| !!! | GCAAAAAAATAAGTTTTTGA+TGG | + | chr7_4:57498854-57498873 | Msa1165550:exon | 20.0% |
| !! | TATCGCTTATATATCATTTA+TGG | + | chr7_4:57499495-57499514 | Msa1165550:intron | 20.0% |
| !! | AAATCTATGATAACTTATCA+AGG | - | chr7_4:57499594-57499613 | None:intergenic | 20.0% |
| !!! | CTTTTATGGAAAAATATTTG+CGG | + | chr7_4:57499916-57499935 | Msa1165550:intron | 20.0% |
| !!! | TCCATTTAAATTCATTTTCT+AGG | + | chr7_4:57500917-57500936 | Msa1165550:intron | 20.0% |
| !! | AATAATTGTTGTGAAAATCA+TGG | - | chr7_4:57501416-57501435 | None:intergenic | 20.0% |
| !!! | ATGATTTTCACAACAATTAT+TGG | + | chr7_4:57501415-57501434 | Msa1165550:intron | 20.0% |
| !!! | TGATTTTCACAACAATTATT+GGG | + | chr7_4:57501416-57501435 | Msa1165550:intron | 20.0% |
| !! | TTTCGCAAATAAAATAAGAA+GGG | + | chr7_4:57501532-57501551 | Msa1165550:intron | 20.0% |
| ! | AAAATTATGAAGGAAAAACC+TGG | - | chr7_4:57498520-57498539 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCATTAGCAG+CGG | + | chr7_4:57498686-57498705 | Msa1165550:five_prime_UTR | 25.0% |
| !! | AAGTTTTTGATGGAAGATTT+AGG | + | chr7_4:57498864-57498883 | Msa1165550:exon | 25.0% |
| ! | AATGATGGTTATGATAATAC+TGG | + | chr7_4:57499062-57499081 | Msa1165550:CDS | 25.0% |
| !! | GAGATTAAATTCTTTTCTCT+TGG | - | chr7_4:57499090-57499109 | None:intergenic | 25.0% |
| ! | TCGAAAAATGCTGATATATT+TGG | + | chr7_4:57499245-57499264 | Msa1165550:CDS | 25.0% |
| ! | AAAAATGCTGATATATTTGG+TGG | + | chr7_4:57499248-57499267 | Msa1165550:CDS | 25.0% |
| ! | TTTAGGTGAAAACACTTAAA+CGG | - | chr7_4:57499547-57499566 | None:intergenic | 25.0% |
| ! | ATAAGAAAAAGAAAAAGCAG+AGG | + | chr7_4:57500499-57500518 | Msa1165550:CDS | 25.0% |
| !! | TTTTGTTCTCTCTAAATTAC+AGG | + | chr7_4:57500847-57500866 | Msa1165550:intron | 25.0% |
| ! | GCCTAGAAAATGAATTTAAA+TGG | - | chr7_4:57500921-57500940 | None:intergenic | 25.0% |
| ! | TTTATAAAACTGTTCTTTGC+AGG | + | chr7_4:57501093-57501112 | Msa1165550:intron | 25.0% |
| ! | GTTTCGCAAATAAAATAAGA+AGG | + | chr7_4:57501531-57501550 | Msa1165550:intron | 25.0% |
| ! | CAAATAAAATAAGAAGGGAA+AGG | + | chr7_4:57501537-57501556 | Msa1165550:intron | 25.0% |
| !!! | GAAAAACCTGGAGAATTTTT+TGG | - | chr7_4:57498508-57498527 | None:intergenic | 30.0% |
| GGAGTGGTTTAAATAATAGA+CGG | + | chr7_4:57499147-57499166 | Msa1165550:CDS | 30.0% | |
| CACCTAAAAGTTTACACTTT+AGG | + | chr7_4:57499559-57499578 | Msa1165550:intron | 30.0% | |
| ! | CTCCTAAAGTGTAAACTTTT+AGG | - | chr7_4:57499564-57499583 | None:intergenic | 30.0% |
| ! | AGTTTACACTTTAGGAGATT+TGG | + | chr7_4:57499567-57499586 | Msa1165550:intron | 30.0% |
| TAAGCAACACTATATAGAGT+GGG | + | chr7_4:57499636-57499655 | Msa1165550:intron | 30.0% | |
| TTTGTTTCACGAGAATATTG+AGG | + | chr7_4:57499844-57499863 | Msa1165550:intron | 30.0% | |
| ATTTGATCAACACGATCAAA+TGG | - | chr7_4:57500000-57500019 | None:intergenic | 30.0% | |
| AGTACAATATACTCACTTCT+AGG | - | chr7_4:57500666-57500685 | None:intergenic | 30.0% | |
| AAATCCAACGAACATAATGA+GGG | - | chr7_4:57500881-57500900 | None:intergenic | 30.0% | |
| AAAATCCAACGAACATAATG+AGG | - | chr7_4:57500882-57500901 | None:intergenic | 30.0% | |
| GAAGCTATCAGAAAAATACT+TGG | + | chr7_4:57500942-57500961 | Msa1165550:CDS | 30.0% | |
| AATACCATCAGATATGTGAT+AGG | + | chr7_4:57501148-57501167 | Msa1165550:CDS | 30.0% | |
| ACATACATAAACAAGTTACC+AGG | - | chr7_4:57501293-57501312 | None:intergenic | 30.0% | |
| !! | GGTAACTTGTTTATGTATGT+TGG | + | chr7_4:57501293-57501312 | Msa1165550:intron | 30.0% |
| TTTATGTATGTTGGCAAACT+TGG | + | chr7_4:57501302-57501321 | Msa1165550:intron | 30.0% | |
| GCAAACTTGGAGAAAAAAAA+TGG | + | chr7_4:57501315-57501334 | Msa1165550:intron | 30.0% | |
| ATGGAAACAACTAAAACCAA+AGG | - | chr7_4:57501397-57501416 | None:intergenic | 30.0% | |
| ACATAACAAAAAGAATCCTC+AGG | - | chr7_4:57501513-57501532 | None:intergenic | 30.0% | |
| ATCATAATCAGTCTTCATCA+TGG | - | chr7_4:57501646-57501665 | None:intergenic | 30.0% | |
| ! | ACTCATGTTACAAGTTTGTT+TGG | + | chr7_4:57501678-57501697 | Msa1165550:intron | 30.0% |
| TTATACGGATTTGTACATGA+TGG | - | chr7_4:57501791-57501810 | None:intergenic | 30.0% | |
| GTACAAATCCGTATAAATAC+CGG | + | chr7_4:57501795-57501814 | Msa1165550:CDS | 30.0% | |
| TACAAATCCGTATAAATACC+GGG | + | chr7_4:57501796-57501815 | Msa1165550:CDS | 30.0% | |
| TTTGAATCCCGGTATTTATA+CGG | - | chr7_4:57501806-57501825 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTGTGG+CGG | - | chr7_4:57498495-57498514 | None:intergenic | 35.0% |
| !!! | GAGAATTTTTTGGCAGTTTG+TGG | - | chr7_4:57498498-57498517 | None:intergenic | 35.0% |
| AAACTGCCAAAAAATTCTCC+AGG | + | chr7_4:57498499-57498518 | Msa1165550:five_prime_UTR | 35.0% | |
| CTCTCTGATGATTGGATATA+TGG | - | chr7_4:57498598-57498617 | None:intergenic | 35.0% | |
| CCTCAATTATGCTCTTAAAG+CGG | + | chr7_4:57498621-57498640 | Msa1165550:five_prime_UTR | 35.0% | |
| !! | GTTTCTAGTGATGAGAATGA+TGG | + | chr7_4:57499047-57499066 | Msa1165550:CDS | 35.0% |
| AAGATGGTTGAGTAACACAA+TGG | - | chr7_4:57499115-57499134 | None:intergenic | 35.0% | |
| ! | TTGTGTTACTCAACCATCTT+CGG | + | chr7_4:57499115-57499134 | Msa1165550:CDS | 35.0% |
| ! | ATGCTGATATATTTGGTGGA+AGG | + | chr7_4:57499252-57499271 | Msa1165550:CDS | 35.0% |
| ! | AATCCTGAGAGTACAAGTTT+GGG | + | chr7_4:57499275-57499294 | Msa1165550:CDS | 35.0% |
| GGTTAAGAAGGTTAAACTCA+AGG | + | chr7_4:57499331-57499350 | Msa1165550:CDS | 35.0% | |
| AAGAAGGTTAAACTCAAGGT+TGG | + | chr7_4:57499335-57499354 | Msa1165550:CDS | 35.0% | |
| TTCGAAAAGCTCTCGTTTAT+CGG | + | chr7_4:57499421-57499440 | Msa1165550:CDS | 35.0% | |
| !!! | ACAGAATTACCTGTTGCTTT+TGG | - | chr7_4:57499463-57499482 | None:intergenic | 35.0% |
| GTAAGCAACACTATATAGAG+TGG | + | chr7_4:57499635-57499654 | Msa1165550:intron | 35.0% | |
| CAAAAGTTATTTGGGCTTGA+AGG | - | chr7_4:57499680-57499699 | None:intergenic | 35.0% | |
| CCCTCATGCAAAAGTTATTT+GGG | - | chr7_4:57499688-57499707 | None:intergenic | 35.0% | |
| ! | CCCAAATAACTTTTGCATGA+GGG | + | chr7_4:57499685-57499704 | Msa1165550:intron | 35.0% |
| ! | CCAAATAACTTTTGCATGAG+GGG | + | chr7_4:57499686-57499705 | Msa1165550:intron | 35.0% |
| ! | CAAATAACTTTTGCATGAGG+GGG | + | chr7_4:57499687-57499706 | Msa1165550:intron | 35.0% |
| ! | AAATAACTTTTGCATGAGGG+GGG | + | chr7_4:57499688-57499707 | Msa1165550:intron | 35.0% |
| TCGATGCATATTATGGACAT+TGG | + | chr7_4:57499757-57499776 | Msa1165550:intron | 35.0% | |
| TCAAAACGCCAAATATCGTA+CGG | - | chr7_4:57499783-57499802 | None:intergenic | 35.0% | |
| CTTGCTAGATGTGTTCTTTA+TGG | - | chr7_4:57500160-57500179 | None:intergenic | 35.0% | |
| ! | ATGATGCTGATGATGAGATT+CGG | + | chr7_4:57500256-57500275 | Msa1165550:CDS | 35.0% |
| GCTTGAAGATACAGATTATG+AGG | + | chr7_4:57500440-57500459 | Msa1165550:CDS | 35.0% | |
| TACAGATTATGAGGATGAAG+TGG | + | chr7_4:57500449-57500468 | Msa1165550:CDS | 35.0% | |
| GAAAAAGAAAAAGCAGAGGA+AGG | + | chr7_4:57500503-57500522 | Msa1165550:CDS | 35.0% | |
| GGAATCTGTTGATGTATTGA+TGG | + | chr7_4:57500524-57500543 | Msa1165550:CDS | 35.0% | |
| ! | ATGTATTGATGGACACTAAG+AGG | + | chr7_4:57500535-57500554 | Msa1165550:CDS | 35.0% |
| ! | TGTATTGATGGACACTAAGA+GGG | + | chr7_4:57500536-57500555 | Msa1165550:CDS | 35.0% |
| AGTTTAATCGAGTTTCCCAA+TGG | + | chr7_4:57500624-57500643 | Msa1165550:CDS | 35.0% | |
| AATATACTCACTTCTAGGTG+GGG | - | chr7_4:57500661-57500680 | None:intergenic | 35.0% | |
| CAATATACTCACTTCTAGGT+GGG | - | chr7_4:57500662-57500681 | None:intergenic | 35.0% | |
| ACAATATACTCACTTCTAGG+TGG | - | chr7_4:57500663-57500682 | None:intergenic | 35.0% | |
| ! | AACTTGCATTTTACGCCTAA+TGG | - | chr7_4:57500797-57500816 | None:intergenic | 35.0% |
| AATCCAACGAACATAATGAG+GGG | - | chr7_4:57500880-57500899 | None:intergenic | 35.0% | |
| ! | ATGTTCGTTGGATTTTACAC+TGG | + | chr7_4:57500886-57500905 | Msa1165550:intron | 35.0% |
| TACCAGGAAGATAGTTTAAC+AGG | - | chr7_4:57501277-57501296 | None:intergenic | 35.0% | |
| CGCATTGCTAATTTGATGTA+TGG | + | chr7_4:57501469-57501488 | Msa1165550:intron | 35.0% | |
| AACAGTTAAAGCAAAGGACT+CGG | - | chr7_4:57501610-57501629 | None:intergenic | 35.0% | |
| ACTGATATCATTAGCAGAGA+AGG | - | chr7_4:57501723-57501742 | None:intergenic | 35.0% | |
| TCAAACTGAACTCAACTGGT+CGG | + | chr7_4:57498443-57498462 | Msa1165550:five_prime_UTR | 40.0% | |
| TATGGTGCAACGCAATTATG+TGG | - | chr7_4:57498580-57498599 | None:intergenic | 40.0% | |
| TGAGGAATCTCTCTGATGAT+TGG | - | chr7_4:57498606-57498625 | None:intergenic | 40.0% | |
| !! | CCGCTTTAAGAGCATAATTG+AGG | - | chr7_4:57498624-57498643 | None:intergenic | 40.0% |
| AGCGGCGCGATTAATAATAT+AGG | + | chr7_4:57498639-57498658 | Msa1165550:five_prime_UTR | 40.0% | |
| ! | TGGAAGATTTAGGATCTACC+CGG | + | chr7_4:57498874-57498893 | Msa1165550:CDS | 40.0% |
| ATTGCTGATACCATCAAACC+GGG | - | chr7_4:57498895-57498914 | None:intergenic | 40.0% | |
| CATTGCTGATACCATCAAAC+CGG | - | chr7_4:57498896-57498915 | None:intergenic | 40.0% | |
| AAATCACGACATTCAGGATC+AGG | - | chr7_4:57498978-57498997 | None:intergenic | 40.0% | |
| ATCATCATCAACACCTCCTT+CGG | + | chr7_4:57499004-57499023 | Msa1165550:CDS | 40.0% | |
| AATAATAGACGGAGCAGTGA+AGG | + | chr7_4:57499158-57499177 | Msa1165550:CDS | 40.0% | |
| CTAGAACCTTTCCAATTAGC+AGG | - | chr7_4:57499194-57499213 | None:intergenic | 40.0% | |
| ! | GAATCCTGAGAGTACAAGTT+TGG | + | chr7_4:57499274-57499293 | Msa1165550:CDS | 40.0% |
| ! | ATCCTGAGAGTACAAGTTTG+GGG | + | chr7_4:57499276-57499295 | Msa1165550:CDS | 40.0% |
| AAGGTTAAACTCAAGGTTGG+TGG | + | chr7_4:57499338-57499357 | Msa1165550:CDS | 40.0% | |
| AAAAGCTCTCGTTTATCGGA+CGG | + | chr7_4:57499425-57499444 | Msa1165550:CDS | 40.0% | |
| GAAGGATACGATCAATGTTC+AGG | - | chr7_4:57499662-57499681 | None:intergenic | 40.0% | |
| ! | GCCCAAATAACTTTTGCATG+AGG | + | chr7_4:57499684-57499703 | Msa1165550:intron | 40.0% |
| CCCCTCATGCAAAAGTTATT+TGG | - | chr7_4:57499689-57499708 | None:intergenic | 40.0% | |
| ! | CAGTTGGCTAAACTTTTAGG+CGG | - | chr7_4:57499737-57499756 | None:intergenic | 40.0% |
| ! | CGACAGTTGGCTAAACTTTT+AGG | - | chr7_4:57499740-57499759 | None:intergenic | 40.0% |
| ! | CCATAATATGCATCGACAGT+TGG | - | chr7_4:57499753-57499772 | None:intergenic | 40.0% |
| CCAACTGTCGATGCATATTA+TGG | + | chr7_4:57499750-57499769 | Msa1165550:intron | 40.0% | |
| ATGTGTCTGCAAGCATTCTA+GGG | + | chr7_4:57499880-57499899 | Msa1165550:intron | 40.0% | |
| !!! | TTTTGAAATCCTTCCACGGA+AGG | - | chr7_4:57500089-57500108 | None:intergenic | 40.0% |
| TTCCGTGGAAGGATTTCAAA+AGG | + | chr7_4:57500088-57500107 | Msa1165550:CDS | 40.0% | |
| TCCGTGGAAGGATTTCAAAA+GGG | + | chr7_4:57500089-57500108 | Msa1165550:CDS | 40.0% | |
| AAGAACACATCTAGCAAGCA+AGG | + | chr7_4:57500162-57500181 | Msa1165550:CDS | 40.0% | |
| GAGATGAAGAAGAATCAAGC+AGG | + | chr7_4:57500322-57500341 | Msa1165550:CDS | 40.0% | |
| ACTCTCTAGCGTCTCTAATA+TGG | + | chr7_4:57500356-57500375 | Msa1165550:CDS | 40.0% | |
| TATGAGGATGAAGTGGAATC+AGG | + | chr7_4:57500456-57500475 | Msa1165550:CDS | 40.0% | |
| ATGAGGATGAAGTGGAATCA+GGG | + | chr7_4:57500457-57500476 | Msa1165550:CDS | 40.0% | |
| TAAACTCGCATTAGATGCAG+AGG | - | chr7_4:57500610-57500629 | None:intergenic | 40.0% | |
| AAAAGAGAAGCCTACAGAAG+AGG | + | chr7_4:57500744-57500763 | Msa1165550:CDS | 40.0% | |
| ! | GCGTAAAATGCAAGTTGAGA+AGG | + | chr7_4:57500801-57500820 | Msa1165550:CDS | 40.0% |
| ATCCAACGAACATAATGAGG+GGG | - | chr7_4:57500879-57500898 | None:intergenic | 40.0% | |
| TACTTGGTCAAGATTCTAGC+AGG | + | chr7_4:57500958-57500977 | Msa1165550:CDS | 40.0% | |
| AAACTGTTCTTTGCAGGAGA+AGG | + | chr7_4:57501099-57501118 | Msa1165550:intron | 40.0% | |
| ! | TGATGCATGCTTTTCTGCTT+CGG | - | chr7_4:57501128-57501147 | None:intergenic | 40.0% |
| AGGACCTATCACATATCTGA+TGG | - | chr7_4:57501155-57501174 | None:intergenic | 40.0% | |
| AGATATGTGATAGGTCCTAC+TGG | + | chr7_4:57501157-57501176 | Msa1165550:CDS | 40.0% | |
| GATATGTGATAGGTCCTACT+GGG | + | chr7_4:57501158-57501177 | Msa1165550:CDS | 40.0% | |
| !! | GCTTGGTGTTTATAATCGCA+GGG | - | chr7_4:57501216-57501235 | None:intergenic | 40.0% |
| TTATAAACACCAAGCCCATC+AGG | + | chr7_4:57501221-57501240 | Msa1165550:CDS | 40.0% | |
| AGGATAGCTTGATACCTGAT+GGG | - | chr7_4:57501238-57501257 | None:intergenic | 40.0% | |
| TAGGATAGCTTGATACCTGA+TGG | - | chr7_4:57501239-57501258 | None:intergenic | 40.0% | |
| CAGGTCACATGCATCAAATT+AGG | - | chr7_4:57501258-57501277 | None:intergenic | 40.0% | |
| GACCTGTTAAACTATCTTCC+TGG | + | chr7_4:57501272-57501291 | Msa1165550:intron | 40.0% | |
| CGAGGAAACAGTTAAAGCAA+AGG | - | chr7_4:57501616-57501635 | None:intergenic | 40.0% | |
| CTTCATCATGGTCAAAATCG+AGG | - | chr7_4:57501634-57501653 | None:intergenic | 40.0% | |
| ATACCGGGATTCAAAAACCA+AGG | + | chr7_4:57501811-57501830 | Msa1165550:CDS | 40.0% | |
| !! | GAACCTTGGTTTTTGAATCC+CGG | - | chr7_4:57501817-57501836 | None:intergenic | 40.0% |
| GGTGTCAAACTGAACTCAAC+TGG | + | chr7_4:57498439-57498458 | Msa1165550:five_prime_UTR | 45.0% | |
| AACTGGTCGGAAAACAGAGA+CGG | + | chr7_4:57498456-57498475 | Msa1165550:five_prime_UTR | 45.0% | |
| ! | TTAGGATCTACCCGGTTTGA+TGG | + | chr7_4:57498882-57498901 | Msa1165550:CDS | 45.0% |
| ATGGTATCAGCAATGCTGTG+AGG | + | chr7_4:57498901-57498920 | Msa1165550:CDS | 45.0% | |
| TCAGGAATAGGCTGTGAATC+AGG | - | chr7_4:57498960-57498979 | None:intergenic | 45.0% | |
| CGACATTCAGGATCAGGAAT+AGG | - | chr7_4:57498972-57498991 | None:intergenic | 45.0% | |
| GGCGAAAAATCACGACATTC+AGG | - | chr7_4:57498984-57499003 | None:intergenic | 45.0% | |
| !! | GAAGGAGGTGTTGATGATGA+TGG | - | chr7_4:57499005-57499024 | None:intergenic | 45.0% |
| GTGTTCTTGCTCCTGCTAAT+TGG | + | chr7_4:57499180-57499199 | Msa1165550:CDS | 45.0% | |
| CTTGCTCCTGCTAATTGGAA+AGG | + | chr7_4:57499185-57499204 | Msa1165550:CDS | 45.0% | |
| GAGTGAGAACAGGGTTAAGA+AGG | + | chr7_4:57499319-57499338 | Msa1165550:CDS | 45.0% | |
| TCTGCATCTAACAGTGCTTC+AGG | + | chr7_4:57499386-57499405 | Msa1165550:CDS | 45.0% | |
| TCTAACAGTGCTTCAGGAAG+CGG | + | chr7_4:57499392-57499411 | Msa1165550:CDS | 45.0% | |
| !!! | ATTACCTGTTGCTTTTGGCG+CGG | - | chr7_4:57499458-57499477 | None:intergenic | 45.0% |
| ! | TTGGCTAAACTTTTAGGCGG+AGG | - | chr7_4:57499734-57499753 | None:intergenic | 45.0% |
| GACATTGGCCGTACGATATT+TGG | + | chr7_4:57499772-57499791 | Msa1165550:intron | 45.0% | |
| GATGTGTCTGCAAGCATTCT+AGG | + | chr7_4:57499879-57499898 | Msa1165550:intron | 45.0% | |
| !!! | CCCCTTTTGAAATCCTTCCA+CGG | - | chr7_4:57500093-57500112 | None:intergenic | 45.0% |
| CCGTGGAAGGATTTCAAAAG+GGG | + | chr7_4:57500090-57500109 | Msa1165550:CDS | 45.0% | |
| TGGAAGGATTTCAAAAGGGG+CGG | + | chr7_4:57500093-57500112 | Msa1165550:CDS | 45.0% | |
| ! | GATTTCAAAAGGGGCGGATT+TGG | + | chr7_4:57500099-57500118 | Msa1165550:CDS | 45.0% |
| ACTCTCTTGCTCTTACGAAC+AGG | - | chr7_4:57500201-57500220 | None:intergenic | 45.0% | |
| ATCTTTGCCTGACCTTGATG+AGG | - | chr7_4:57500391-57500410 | None:intergenic | 45.0% | |
| TCATCAAGGTCAGGCAAAGA+TGG | + | chr7_4:57500390-57500409 | Msa1165550:CDS | 45.0% | |
| TGACTCTTACAACGCGTCAA+CGG | + | chr7_4:57500562-57500581 | Msa1165550:CDS | 45.0% | |
| GGCATCTTTGCCTGATTGAA+GGG | - | chr7_4:57500589-57500608 | None:intergenic | 45.0% | |
| AGGCATCTTTGCCTGATTGA+AGG | - | chr7_4:57500590-57500609 | None:intergenic | 45.0% | |
| TTCCCCCTCATTATGTTCGT+TGG | + | chr7_4:57500874-57500893 | Msa1165550:intron | 45.0% | |
| TTCTAGCAGGAAAAAGCGAG+AGG | + | chr7_4:57500971-57500990 | Msa1165550:CDS | 45.0% | |
| !! | AAAGAAGCGCCAAGAAGATC+TGG | + | chr7_4:57501001-57501020 | Msa1165550:CDS | 45.0% |
| AAACCTGTGCCAGATCTTCT+TGG | - | chr7_4:57501013-57501032 | None:intergenic | 45.0% | |
| AAGAAGATCTGGCACAGGTT+TGG | + | chr7_4:57501012-57501031 | Msa1165550:intron | 45.0% | |
| ! | GTGACTTTTCCCGAGGAAAT+GGG | + | chr7_4:57501187-57501206 | Msa1165550:CDS | 45.0% |
| ! | TGACTTTTCCCGAGGAAATG+GGG | + | chr7_4:57501188-57501207 | Msa1165550:CDS | 45.0% |
| !! | GGCTTGGTGTTTATAATCGC+AGG | - | chr7_4:57501217-57501236 | None:intergenic | 45.0% |
| CAAATCTCTGTGTTCGCCTT+TGG | + | chr7_4:57501378-57501397 | Msa1165550:intron | 45.0% | |
| CCTCAGGAAGATAGACAAAC+AGG | - | chr7_4:57501497-57501516 | None:intergenic | 45.0% | |
| CCTGTTTGTCTATCTTCCTG+AGG | + | chr7_4:57501494-57501513 | Msa1165550:intron | 45.0% | |
| ! | TAGCATTGGAGACTGCAAAG+AGG | - | chr7_4:57501839-57501858 | None:intergenic | 45.0% |
| GTATCAGCAATGCTGTGAGG+AGG | + | chr7_4:57498904-57498923 | Msa1165550:CDS | 50.0% | |
| ATCATCAACACCTCCTTCGG+AGG | + | chr7_4:57499007-57499026 | Msa1165550:CDS | 50.0% | |
| TTATCAGCAGCTTCCTCCGA+AGG | - | chr7_4:57499023-57499042 | None:intergenic | 50.0% | |
| ACTCAACCATCTTCGGCTAG+TGG | + | chr7_4:57499122-57499141 | Msa1165550:CDS | 50.0% | |
| AACCATCTTCGGCTAGTGGA+CGG | + | chr7_4:57499126-57499145 | Msa1165550:CDS | 50.0% | |
| TGCCCCAAACTTGTACTCTC+AGG | - | chr7_4:57499281-57499300 | None:intergenic | 50.0% | |
| ! | AGTTTGGGGCAGCTTCAAGA+TGG | + | chr7_4:57499290-57499309 | Msa1165550:CDS | 50.0% |
| ! | GGGCAGCTTCAAGATGGATT+GGG | + | chr7_4:57499296-57499315 | Msa1165550:CDS | 50.0% |
| !! | GGCAGCTTCAAGATGGATTG+GGG | + | chr7_4:57499297-57499316 | Msa1165550:CDS | 50.0% |
| !! | ATGGATTGGGGAGTGAGAAC+AGG | + | chr7_4:57499309-57499328 | Msa1165550:CDS | 50.0% |
| ! | TGGATTGGGGAGTGAGAACA+GGG | + | chr7_4:57499310-57499329 | Msa1165550:CDS | 50.0% |
| !! | AAAAGGGGCGGATTTGGTGT+CGG | + | chr7_4:57500105-57500124 | Msa1165550:CDS | 50.0% |
| TGGACAATGCTGCCTCATCA+AGG | + | chr7_4:57500376-57500395 | Msa1165550:CDS | 50.0% | |
| AATGCTGCCTCATCAAGGTC+AGG | + | chr7_4:57500381-57500400 | Msa1165550:CDS | 50.0% | |
| GACTCTTACAACGCGTCAAC+GGG | + | chr7_4:57500563-57500582 | Msa1165550:CDS | 50.0% | |
| GCTGCTGTCAAAGAAAACCG+AGG | + | chr7_4:57500768-57500787 | Msa1165550:CDS | 50.0% | |
| AGAAAACCGAGGCTGCCATT+AGG | + | chr7_4:57500779-57500798 | Msa1165550:CDS | 50.0% | |
| TTTACGCCTAATGGCAGCCT+CGG | - | chr7_4:57500788-57500807 | None:intergenic | 50.0% | |
| ! | TGCAAGTTGAGAAGGCTGCT+AGG | + | chr7_4:57500809-57500828 | Msa1165550:CDS | 50.0% |
| ! | GCAAGTTGAGAAGGCTGCTA+GGG | + | chr7_4:57500810-57500829 | Msa1165550:CDS | 50.0% |
| AAAGTCACCACTGTCCCAGT+AGG | - | chr7_4:57501175-57501194 | None:intergenic | 50.0% | |
| ! | GGTGACTTTTCCCGAGGAAA+TGG | + | chr7_4:57501186-57501205 | Msa1165550:CDS | 50.0% |
| !! | AGCTTGATACCTGATGGGCT+TGG | - | chr7_4:57501233-57501252 | None:intergenic | 50.0% |
| GAGACTGCAAAGAGGAACCT+TGG | - | chr7_4:57501831-57501850 | None:intergenic | 50.0% | |
| CCTGGACAGCATTGTAGCAT+TGG | - | chr7_4:57501853-57501872 | None:intergenic | 50.0% | |
| CCAATGCTACAATGCTGTCC+AGG | + | chr7_4:57501850-57501869 | Msa1165550:CDS | 50.0% | |
| TTTCACCAGTAGTCTTCGCC+TGG | - | chr7_4:57501871-57501890 | None:intergenic | 50.0% | |
| TGGCAGTTTGTGGCGGTTGA+CGG | - | chr7_4:57498488-57498507 | None:intergenic | 55.0% | |
| GCAATGCTGTGAGGAGGAAG+AGG | + | chr7_4:57498910-57498929 | Msa1165550:CDS | 55.0% | |
| ATAGGCTGTGAATCAGGCCG+TGG | - | chr7_4:57498954-57498973 | None:intergenic | 55.0% | |
| GGGGCAGCTTCAAGATGGAT+TGG | + | chr7_4:57499295-57499314 | Msa1165550:CDS | 55.0% | |
| TCTCCGTCTGCTAAGAAGCG+AGG | + | chr7_4:57500054-57500073 | Msa1165550:CDS | 55.0% | |
| AGGCCTCGCTTCTTAGCAGA+CGG | - | chr7_4:57500060-57500079 | None:intergenic | 55.0% | |
| GCTAAGAAGCGAGGCCTCAA+AGG | + | chr7_4:57500063-57500082 | Msa1165550:CDS | 55.0% | |
| !! | AAAGGGGCGGATTTGGTGTC+GGG | + | chr7_4:57500106-57500125 | Msa1165550:CDS | 55.0% |
| GGGAAGGAAGAGACGTCGAT+GGG | + | chr7_4:57500126-57500145 | Msa1165550:CDS | 55.0% | |
| GGAAGGAAGAGACGTCGATG+GGG | + | chr7_4:57500127-57500146 | Msa1165550:CDS | 55.0% | |
| AGTACCCAAGCGACGTGTAC+TGG | + | chr7_4:57500218-57500237 | Msa1165550:CDS | 55.0% | |
| CCATCCAGTACACGTCGCTT+GGG | - | chr7_4:57500225-57500244 | None:intergenic | 55.0% | |
| TCCATCCAGTACACGTCGCT+TGG | - | chr7_4:57500226-57500245 | None:intergenic | 55.0% | |
| GAAGTGGAATCAGGGTCTGC+TGG | + | chr7_4:57500465-57500484 | Msa1165550:CDS | 55.0% | |
| GGGGCAGGAGGTAATCCATT+GGG | - | chr7_4:57500642-57500661 | None:intergenic | 55.0% | |
| TGGGGCAGGAGGTAATCCAT+TGG | - | chr7_4:57500643-57500662 | None:intergenic | 55.0% | |
| TACTCACTTCTAGGTGGGGC+AGG | - | chr7_4:57500657-57500676 | None:intergenic | 55.0% | |
| GACAGCAGCTCCTCTTCTGT+AGG | - | chr7_4:57500757-57500776 | None:intergenic | 55.0% | |
| GAAGGCTGCTAGGGAATCTG+AGG | + | chr7_4:57500819-57500838 | Msa1165550:CDS | 55.0% | |
| AGATCTGGCACAGGTTTGGC+TGG | + | chr7_4:57501016-57501035 | Msa1165550:intron | 55.0% | |
| GATCTGGCACAGGTTTGGCT+GGG | + | chr7_4:57501017-57501036 | Msa1165550:intron | 55.0% | |
| GATAGGTCCTACTGGGACAG+TGG | + | chr7_4:57501165-57501184 | Msa1165550:CDS | 55.0% | |
| ! | GACAGTGGTGACTTTTCCCG+AGG | + | chr7_4:57501180-57501199 | Msa1165550:CDS | 55.0% |
| TCAGCAGCTTCCTCCGAAGG+AGG | - | chr7_4:57499020-57499039 | None:intergenic | 60.0% | |
| CTCCGTCCACTAGCCGAAGA+TGG | - | chr7_4:57499131-57499150 | None:intergenic | 60.0% | |
| ! | TCTTCGGCTAGTGGACGGAG+TGG | + | chr7_4:57499131-57499150 | Msa1165550:CDS | 60.0% |
| !!! | CTGTTGCTTTTGGCGCGGTC+TGG | - | chr7_4:57499453-57499472 | None:intergenic | 60.0% |
| CAGACCGCGCCAAAAGCAAC+AGG | + | chr7_4:57499451-57499470 | Msa1165550:CDS | 60.0% | |
| CCTTCCACGGAAGGCCTTTG+AGG | - | chr7_4:57500080-57500099 | None:intergenic | 60.0% | |
| CCTCAAAGGCCTTCCGTGGA+AGG | + | chr7_4:57500077-57500096 | Msa1165550:CDS | 60.0% | |
| CGGGAAGGAAGAGACGTCGA+TGG | + | chr7_4:57500125-57500144 | Msa1165550:CDS | 60.0% | |
| CCCAAGCGACGTGTACTGGA+TGG | + | chr7_4:57500222-57500241 | Msa1165550:CDS | 60.0% | |
| AGGGTCTGCTGGAGAGCAAG+AGG | + | chr7_4:57500476-57500495 | Msa1165550:CDS | 60.0% | |
| CGTCAACGGGCCCTTCAATC+AGG | + | chr7_4:57500576-57500595 | Msa1165550:CDS | 60.0% | |
| TCACTTCTAGGTGGGGCAGG+AGG | - | chr7_4:57500654-57500673 | None:intergenic | 60.0% | |
| GCGCCAAGAAGATCTGGCAC+AGG | + | chr7_4:57501007-57501026 | Msa1165550:CDS | 60.0% | |
| GCAGGGATCCCCATTTCCTC+GGG | - | chr7_4:57501199-57501218 | None:intergenic | 60.0% | |
| CGCAGGGATCCCCATTTCCT+CGG | - | chr7_4:57501200-57501219 | None:intergenic | 60.0% | |
| GCTGTCCAGGCGAAGACTAC+TGG | + | chr7_4:57501863-57501882 | Msa1165550:CDS | 60.0% | |
| AGAGGAGCCAACCATCGCGC+AGG | + | chr7_4:57498928-57498947 | Msa1165550:CDS | 65.0% | |
| GAGGCCTCAAAGGCCTTCCG+TGG | + | chr7_4:57500073-57500092 | Msa1165550:CDS | 65.0% | |
| !! | GGGCGGATTTGGTGTCGGGA+AGG | + | chr7_4:57500110-57500129 | Msa1165550:CDS | 65.0% |
| GCACACATCTCGCGAGGTGG+AGG | - | chr7_4:57501764-57501783 | None:intergenic | 65.0% | |
| CCAGCACACATCTCGCGAGG+TGG | - | chr7_4:57501767-57501786 | None:intergenic | 65.0% | |
| CCACCTCGCGAGATGTGTGC+TGG | + | chr7_4:57501764-57501783 | Msa1165550:CDS | 65.0% | |
| GGACCAGCACACATCTCGCG+AGG | - | chr7_4:57501770-57501789 | None:intergenic | 65.0% | |
| GCCAACCATCGCGCAGGCCA+CGG | + | chr7_4:57498934-57498953 | Msa1165550:CDS | 70.0% | |
| GCCGTGGCCTGCGCGATGGT+TGG | - | chr7_4:57498938-57498957 | None:intergenic | 75.0% | |
| TCAGGCCGTGGCCTGCGCGA+TGG | - | chr7_4:57498942-57498961 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57498425 | 57501895 | 57498425 | ID=Msa1165550;Name=Msa1165550 |
| chr7_4 | mRNA | 57498425 | 57501895 | 57498425 | ID=Msa1165550-mRNA-1;Parent=Msa1165550;Name=Msa1165550-mRNA-1;_AED=0.10;_eAED=0.16;_QI=448|0.8|0.83|1|1|1|6|0|569 |
| chr7_4 | exon | 57498425 | 57499472 | 57498425 | ID=Msa1165550-mRNA-1:exon:17422;Parent=Msa1165550-mRNA-1 |
| chr7_4 | exon | 57500033 | 57500669 | 57500033 | ID=Msa1165550-mRNA-1:exon:17423;Parent=Msa1165550-mRNA-1 |
| chr7_4 | exon | 57500740 | 57500840 | 57500740 | ID=Msa1165550-mRNA-1:exon:17424;Parent=Msa1165550-mRNA-1 |
| chr7_4 | exon | 57500939 | 57501028 | 57500939 | ID=Msa1165550-mRNA-1:exon:17425;Parent=Msa1165550-mRNA-1 |
| chr7_4 | exon | 57501115 | 57501242 | 57501115 | ID=Msa1165550-mRNA-1:exon:17426;Parent=Msa1165550-mRNA-1 |
| chr7_4 | exon | 57501742 | 57501895 | 57501742 | ID=Msa1165550-mRNA-1:exon:17427;Parent=Msa1165550-mRNA-1 |
| chr7_4 | five_prime_UTR | 57498425 | 57498872 | 57498425 | ID=Msa1165550-mRNA-1:five_prime_utr;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57498873 | 57499472 | 57498873 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57500033 | 57500669 | 57500033 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57500740 | 57500840 | 57500740 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57500939 | 57501028 | 57500939 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57501115 | 57501242 | 57501115 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| chr7_4 | CDS | 57501742 | 57501895 | 57501742 | ID=Msa1165550-mRNA-1:cds;Parent=Msa1165550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
