AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238030 MtrunA17_Chr2g0287701 100.000 127 0 0 1 127 1 127 1.71e-83 245
Msa0238030 MtrunA17_Chr4g0065691 77.778 126 28 0 1 126 1 126 1.43e-62 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238030 AT5G19070.1 75.591 127 31 0 1 127 1 127 9.94e-68 206
Msa0238030 AT5G19070.2 75.591 127 31 0 1 127 1 127 1.25e-67 204
Msa0238030 AT1G03260.1 66.929 127 41 1 1 127 4 129 3.33e-54 171

Find 50 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCCACTGATTTAAATTT+TGG 0.081182 2_2:+11281719 None:intergenic
CTTGGTGGTGGTTATCTCTT+TGG 0.177375 2_2:-11282106 Msa0238030:CDS
TGGCAAATCTTGGAGGATTA+AGG 0.259687 2_2:-11284998 Msa0238030:five_prime_UTR
TTTCCTGGGCTTCTGCCTTC+AGG 0.283741 2_2:-11284887 Msa0238030:CDS
CTATGGGTTGATCGTGATCT+TGG 0.316743 2_2:-11284642 Msa0238030:CDS
TTAGGATGTGACATTGATTA+AGG 0.317048 2_2:+11285089 None:intergenic
GAAGACCGTTTGTTGTTTCT+AGG 0.317589 2_2:-11281754 Msa0238030:CDS
GGCTTTGTTGCCGACTCTAT+TGG 0.330005 2_2:-11282073 Msa0238030:CDS
ATTTCAAACCTGGCAAATCT+TGG 0.343939 2_2:-11285008 Msa0238030:five_prime_UTR
TTATGAAGGACTTTCTACTA+TGG 0.344847 2_2:-11284659 Msa0238030:CDS
TTGGTGGTGGTTATCTCTTT+GGG 0.359729 2_2:-11282105 Msa0238030:CDS
TATGGGTTGATCGTGATCTT+GGG 0.365098 2_2:-11284641 Msa0238030:CDS
TGATCGTGATCTTGGGGCAT+GGG 0.367341 2_2:-11284634 Msa0238030:CDS
GGTAGGAGTGTAATTTCATT+TGG 0.380159 2_2:+11285187 None:intergenic
GAAGATGAAGAAGATCGAAA+AGG 0.408098 2_2:+11285165 None:intergenic
GCAGGAGCTGCATTTCTTCT+CGG 0.418531 2_2:-11282037 Msa0238030:CDS
GGCAAATCTTGGAGGATTAA+GGG 0.425470 2_2:-11284997 Msa0238030:five_prime_UTR
TTGATCGTGATCTTGGGGCA+TGG 0.438082 2_2:-11284635 Msa0238030:CDS
CGTCTTCGTCGGTTAAATCA+AGG 0.443235 2_2:+11284949 None:intergenic
TTTCACTCTTCCTATTGAAA+AGG 0.449720 2_2:-11284820 Msa0238030:intron
TTACATTCCCTTGACTGTCT+TGG 0.456583 2_2:-11283485 Msa0238030:CDS
AAGATGAAGAAGATCGAAAA+GGG 0.457607 2_2:+11285166 None:intergenic
TATCTCTTTGGGCTTCCAGT+TGG 0.477533 2_2:-11282094 Msa0238030:CDS
GAGTCGGCAACAAAGCCAAC+TGG 0.478879 2_2:+11282079 None:intergenic
TCAAACCTGGCAAATCTTGG+AGG 0.489939 2_2:-11285005 Msa0238030:five_prime_UTR
GACTCTATTGGTGCAACTGT+TGG 0.498561 2_2:-11282061 Msa0238030:CDS
GATCCTGAAGGCAGAAGCCC+AGG 0.500493 2_2:+11284884 None:intergenic
TATGAAGGACTTTCTACTAT+GGG 0.500714 2_2:-11284658 Msa0238030:CDS
GATCGTGATCTTGGGGCATG+GGG 0.506242 2_2:-11284633 Msa0238030:CDS
TTAATCCTCCAAGATTTGCC+AGG 0.508246 2_2:+11285000 None:intergenic
CGACAATAACAGCAAGAAGA+AGG 0.509391 2_2:+11284847 None:intergenic
ATTGGTGCAACTGTTGGTGC+AGG 0.520616 2_2:-11282055 Msa0238030:CDS
CTTACAGTAAGAACTGAAGC+TGG 0.538772 2_2:+11283457 None:intergenic
TGAAGAAGATCGAAAAGGGT+AGG 0.539340 2_2:+11285170 None:intergenic
AAGACGAAGAGTGTCGTCCT+TGG 0.550809 2_2:-11284932 Msa0238030:five_prime_UTR
TTATCCAAAATTTAAATCAG+TGG 0.572801 2_2:-11281723 Msa0238030:CDS
GTCTTCGTCGGTTAAATCAA+GGG 0.573079 2_2:+11284950 None:intergenic
GAAAGAGAAAATTTCAAACC+TGG 0.577636 2_2:-11285018 Msa0238030:five_prime_UTR
TGGAACTGCCAAGACAGTCA+AGG 0.581473 2_2:+11283477 None:intergenic
TTCAGCCTAGAAACAACAAA+CGG 0.585816 2_2:+11281749 None:intergenic
GGAACTGCCAAGACAGTCAA+GGG 0.591087 2_2:+11283478 None:intergenic
ACGACACTCTTCGTCTTCGT+CGG 0.599770 2_2:+11284938 None:intergenic
ATGGGTTGATCGTGATCTTG+GGG 0.603265 2_2:-11284640 Msa0238030:CDS
ATGGTGAATCTTCGACGCCA+AGG 0.606150 2_2:+11284915 None:intergenic
AACAGTTGCACCAATAGAGT+CGG 0.615959 2_2:+11282063 None:intergenic
TCGTCGGTTAAATCAAGGGA+AGG 0.616931 2_2:+11284954 None:intergenic
AAACTGACTTACAAAACAAG+TGG 0.618122 2_2:+11284609 None:intergenic
AAGAAGAAGAGTGATCCTGA+AGG 0.621372 2_2:+11284872 None:intergenic
ATCGTGATCTTGGGGCATGG+GGG 0.666220 2_2:-11284632 Msa0238030:CDS
TTGGCGTCGAAGATTCACCA+TGG 0.705965 2_2:-11284913 Msa0238030:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATAAATAATTGTAAT+TGG - chr2_2:11282389-11282408 Msa0238030:intron 10.0%
!!! TTATTTAAGGTTTATGTTTT+AGG + chr2_2:11281828-11281847 None:intergenic 15.0%
!!! AAAAATGCAGTTTTTATTTA+AGG + chr2_2:11281841-11281860 None:intergenic 15.0%
!! AAACATCAAAATATCAATAA+GGG + chr2_2:11282194-11282213 None:intergenic 15.0%
!! AAAACATCAAAATATCAATA+AGG + chr2_2:11282195-11282214 None:intergenic 15.0%
!!! TAACATATTGATCTTAATTT+TGG - chr2_2:11283316-11283335 Msa0238030:intron 15.0%
!!! AATTCATAACTCAATATTTT+TGG - chr2_2:11283368-11283387 Msa0238030:intron 15.0%
!!! ATTCATAACTCAATATTTTT+GGG - chr2_2:11283369-11283388 Msa0238030:intron 15.0%
!! TAGATAATTATATCATCTTT+AGG - chr2_2:11283587-11283606 Msa0238030:intron 15.0%
!! ATTACCATTTAATAACATTA+CGG - chr2_2:11283849-11283868 Msa0238030:intron 15.0%
!! TAACATTATATAGAATAATG+TGG + chr2_2:11285064-11285083 None:intergenic 15.0%
!! ATCGAATAGAAAATCTAAAA+GGG + chr2_2:11282118-11282137 None:intergenic 20.0%
!! AATCGAATAGAAAATCTAAA+AGG + chr2_2:11282119-11282138 None:intergenic 20.0%
!!! TGATGTTTTTCATGTTTTTT+TGG - chr2_2:11282206-11282225 Msa0238030:intron 20.0%
!!! TCTTTCTTAATAGTTTTTCT+AGG + chr2_2:11282624-11282643 None:intergenic 20.0%
!! TTAATGAATTTGGTAGAAAA+TGG - chr2_2:11282652-11282671 Msa0238030:intron 20.0%
!! TTTAGTATAATTGCAATTGA+TGG - chr2_2:11282794-11282813 Msa0238030:intron 20.0%
!! AACACACCAAAAAAAAAAAA+TGG + chr2_2:11283012-11283031 None:intergenic 20.0%
!!! ATTCAATCTTCAATTTGTTA+GGG - chr2_2:11283061-11283080 Msa0238030:intron 20.0%
!!! TTTTCTTTTTTGGAAAAAGT+AGG - chr2_2:11283286-11283305 Msa0238030:intron 20.0%
!! ATTCAAAATTGAATTCATCA+TGG - chr2_2:11283620-11283639 Msa0238030:intron 20.0%
!! TTCAAAATTGAATTCATCAT+GGG - chr2_2:11283621-11283640 Msa0238030:intron 20.0%
!! TAGATAGGGAATTATTTATT+TGG + chr2_2:11283825-11283844 None:intergenic 20.0%
!! AAATGGTAATTGAATAGATA+GGG + chr2_2:11283839-11283858 None:intergenic 20.0%
!! TAAATGGTAATTGAATAGAT+AGG + chr2_2:11283840-11283859 None:intergenic 20.0%
!! TAGACAGTTATTATGTTATT+AGG + chr2_2:11283878-11283897 None:intergenic 20.0%
!! TAACATAATAACTGTCTAAT+TGG - chr2_2:11283880-11283899 Msa0238030:intron 20.0%
!!! TATTTCTTTTGACAATTTCA+GGG + chr2_2:11284132-11284151 None:intergenic 20.0%
!!! ATATTTCTTTTGACAATTTC+AGG + chr2_2:11284133-11284152 None:intergenic 20.0%
!! TTATCCAAAATTTAAATCAG+TGG - chr2_2:11285173-11285192 Msa0238030:five_prime_UTR 20.0%
!! AAAAAGCAAACCTTTTCAAT+AGG + chr2_2:11282089-11282108 None:intergenic 25.0%
!!! CTCTAAAATTGACATATTGT+TGG - chr2_2:11282322-11282341 Msa0238030:intron 25.0%
! GATCTAGAGATTAATGAATT+TGG - chr2_2:11282642-11282661 Msa0238030:intron 25.0%
! AAACTTCACAAATTGAAACA+AGG + chr2_2:11282777-11282796 None:intergenic 25.0%
!!! TTGTAGTTCTAACATCATTT+AGG - chr2_2:11282922-11282941 Msa0238030:intron 25.0%
!!! CTAACATCATTTAGGTTTTA+TGG - chr2_2:11282930-11282949 Msa0238030:intron 25.0%
!!! AGGATGCCATTTTTTTTTTT+TGG - chr2_2:11283003-11283022 Msa0238030:intron 25.0%
!! GATTCAATCTTCAATTTGTT+AGG - chr2_2:11283060-11283079 Msa0238030:intron 25.0%
! TAAGAAATAGCTTCCAAAAT+AGG + chr2_2:11283107-11283126 None:intergenic 25.0%
! TGACAATATTGTTCCAAATT+TGG - chr2_2:11283248-11283267 Msa0238030:intron 25.0%
!!! TACAAAAGCATTTCCAAATT+TGG + chr2_2:11283264-11283283 None:intergenic 25.0%
!! AAATTTGGAAATGCTTTTGT+AGG - chr2_2:11283263-11283282 Msa0238030:intron 25.0%
!! CTTTTGTAGGTTTTCTTTTT+TGG - chr2_2:11283276-11283295 Msa0238030:intron 25.0%
!! AAGAACTATTGTTGTTACTT+TGG - chr2_2:11283466-11283485 Msa0238030:CDS 25.0%
! AGGAAATAAAACATAAGCTA+AGG - chr2_2:11283675-11283694 Msa0238030:intron 25.0%
! ACAGTTATTATGTTATTAGG+CGG + chr2_2:11283875-11283894 None:intergenic 25.0%
! ATATTAGTAAACATTACGAG+AGG + chr2_2:11283937-11283956 None:intergenic 25.0%
! TCGTAATGTTTACTAATATG+TGG - chr2_2:11283938-11283957 Msa0238030:intron 25.0%
!! ATTTCTTTTGACAATTTCAG+GGG + chr2_2:11284131-11284150 None:intergenic 25.0%
! CTCTGTTCTCATTATTTAAA+CGG + chr2_2:11284369-11284388 None:intergenic 25.0%
! TTTAAATAATGAGAACAGAG+AGG - chr2_2:11284369-11284388 Msa0238030:intron 25.0%
! TTAAATAATGAGAACAGAGA+GGG - chr2_2:11284370-11284389 Msa0238030:intron 25.0%
! AGAACTTATAGTTAATACCA+GGG + chr2_2:11284465-11284484 None:intergenic 25.0%
! TAGAACTTATAGTTAATACC+AGG + chr2_2:11284466-11284485 None:intergenic 25.0%
!! AAGTCAATCATTTTCTTCAA+TGG - chr2_2:11284488-11284507 Msa0238030:intron 25.0%
! AAAATGCATTGTAATAGAGA+TGG + chr2_2:11284722-11284741 None:intergenic 25.0%
!!! AATATACTCTTTTTTCAGCT+TGG - chr2_2:11284772-11284791 Msa0238030:intron 25.0%
!! AGGTTTTTCTTGATTAAAAC+AGG - chr2_2:11284975-11284994 Msa0238030:five_prime_UTR 25.0%
!! GGTTTTTCTTGATTAAAACA+GGG - chr2_2:11284976-11284995 Msa0238030:five_prime_UTR 25.0%
!!! ATTGCCACTGATTTAAATTT+TGG + chr2_2:11285180-11285199 None:intergenic 25.0%
AAGATGAAGAAGATCGAAAA+GGG + chr2_2:11281733-11281752 None:intergenic 30.0%
! TTTTGTTGAGAACAGAGATT+TGG + chr2_2:11281764-11281783 None:intergenic 30.0%
! TTAGGATGTGACATTGATTA+AGG + chr2_2:11281810-11281829 None:intergenic 30.0%
GAAAGAGAAAATTTCAAACC+TGG - chr2_2:11281878-11281897 Msa0238030:intron 30.0%
TTTCACTCTTCCTATTGAAA+AGG - chr2_2:11282076-11282095 Msa0238030:CDS 30.0%
TTTCTATTCGATTTCGATTC+TGG - chr2_2:11282126-11282145 Msa0238030:intron 30.0%
TTCTATTCGATTTCGATTCT+GGG - chr2_2:11282127-11282146 Msa0238030:intron 30.0%
!! TTTTGGTGTGTAGATTATGA+AGG - chr2_2:11282223-11282242 Msa0238030:intron 30.0%
TTATGAAGGACTTTCTACTA+TGG - chr2_2:11282237-11282256 Msa0238030:intron 30.0%
TATGAAGGACTTTCTACTAT+GGG - chr2_2:11282238-11282257 Msa0238030:intron 30.0%
! AAACTGACTTACAAAACAAG+TGG + chr2_2:11282290-11282309 None:intergenic 30.0%
! TGACATATTGTTGGAGATTT+TGG - chr2_2:11282331-11282350 Msa0238030:intron 30.0%
TAACTACACAGATTGAAACA+AGG + chr2_2:11282375-11282394 None:intergenic 30.0%
AATTATTTGCGAAGACTAGA+CGG - chr2_2:11282415-11282434 Msa0238030:intron 30.0%
TGGTGTATGATAAAACATCA+CGG - chr2_2:11282672-11282691 Msa0238030:intron 30.0%
TATGCTTGAAGTAGCATTAT+TGG - chr2_2:11283159-11283178 Msa0238030:intron 30.0%
!!! TCTTTTTTGGAAAAAGTAGG+AGG - chr2_2:11283289-11283308 Msa0238030:intron 30.0%
!!! CATAACTCAATATTTTTGGG+TGG - chr2_2:11283372-11283391 Msa0238030:intron 30.0%
!!! AATATTTTTGGGTGGTTTTC+AGG - chr2_2:11283380-11283399 Msa0238030:intron 30.0%
!!! ATATTTTTGGGTGGTTTTCA+GGG - chr2_2:11283381-11283400 Msa0238030:intron 30.0%
TAGAAACGGTTATAGTGATA+AGG - chr2_2:11283655-11283674 Msa0238030:intron 30.0%
GTTATTGAGTGGTTATAAGA+GGG + chr2_2:11283793-11283812 None:intergenic 30.0%
AGTTATTGAGTGGTTATAAG+AGG + chr2_2:11283794-11283813 None:intergenic 30.0%
GGGAATTATTTATTTGGCAT+TGG + chr2_2:11283819-11283838 None:intergenic 30.0%
TGATAGTTTAGAAATGTCAG+TGG + chr2_2:11284234-11284253 None:intergenic 30.0%
TGATAAGAACCAGACATTAT+TGG + chr2_2:11284279-11284298 None:intergenic 30.0%
! TTTTCTTGATTAAAACAGGG+TGG - chr2_2:11284979-11284998 Msa0238030:five_prime_UTR 30.0%
! CGTTGTCAAATTTTACAGAT+TGG - chr2_2:11285120-11285139 Msa0238030:five_prime_UTR 30.0%
GAAGATGAAGAAGATCGAAA+AGG + chr2_2:11281734-11281753 None:intergenic 35.0%
ATTTCAAACCTGGCAAATCT+TGG - chr2_2:11281888-11281907 Msa0238030:intron 35.0%
ATTATTTGCGAAGACTAGAC+GGG - chr2_2:11282416-11282435 Msa0238030:intron 35.0%
ATGACTACATTAGAGAGAGT+TGG - chr2_2:11282451-11282470 Msa0238030:intron 35.0%
TGACTACATTAGAGAGAGTT+GGG - chr2_2:11282452-11282471 Msa0238030:intron 35.0%
GGGTAACATAGTAGAAAAGA+TGG - chr2_2:11282481-11282500 Msa0238030:intron 35.0%
TAGAAAAGATGGTGCAAACT+AGG - chr2_2:11282492-11282511 Msa0238030:intron 35.0%
AGAAAAGATGGTGCAAACTA+GGG - chr2_2:11282493-11282512 Msa0238030:intron 35.0%
! AAACTAGGGTTAGGTTGTTT+AGG - chr2_2:11282507-11282526 Msa0238030:intron 35.0%
ATCACTAATCAGATCACTTG+AGG - chr2_2:11282588-11282607 Msa0238030:intron 35.0%
!!! TGATGGAGTTTTTTGTGAAG+AGG - chr2_2:11282811-11282830 Msa0238030:intron 35.0%
TGTGAAGAGGAAATATTGTG+TGG - chr2_2:11282824-11282843 Msa0238030:intron 35.0%
! AAACAATGCGATTTTTGACG+TGG - chr2_2:11282963-11282982 Msa0238030:intron 35.0%
! CTTTTCTGCTAAGCCTATTT+TGG - chr2_2:11283091-11283110 Msa0238030:intron 35.0%
TGAGCGTTCATTAGATTGTA+AGG - chr2_2:11283200-11283219 Msa0238030:intron 35.0%
!!! TGATCTTAATTTTGGTGCTG+TGG - chr2_2:11283324-11283343 Msa0238030:intron 35.0%
!!! GATCTTAATTTTGGTGCTGT+GGG - chr2_2:11283325-11283344 Msa0238030:intron 35.0%
GGGTTATCATGTGATAGAAA+CGG - chr2_2:11283641-11283660 Msa0238030:intron 35.0%
AGAGATAGTCTACTGTTACT+AGG - chr2_2:11283700-11283719 Msa0238030:intron 35.0%
TCCAAGAAATTCAAGAGTCT+TGG - chr2_2:11283732-11283751 Msa0238030:intron 35.0%
ACCAAGACTCTTGAATTTCT+TGG + chr2_2:11283736-11283755 None:intergenic 35.0%
CAAGATCTCTAATTCTTGGA+AGG + chr2_2:11283764-11283783 None:intergenic 35.0%
CTTCCAAGAATTAGAGATCT+TGG - chr2_2:11283762-11283781 Msa0238030:intron 35.0%
TGACCAAGATCTCTAATTCT+TGG + chr2_2:11283768-11283787 None:intergenic 35.0%
AACATCATGTTGCTGAGATA+TGG - chr2_2:11283964-11283983 Msa0238030:intron 35.0%
ATACCCTATGATGAGGATTA+GGG + chr2_2:11284050-11284069 None:intergenic 35.0%
AATACCCTATGATGAGGATT+AGG + chr2_2:11284051-11284070 None:intergenic 35.0%
! ATCCTCATCATAGGGTATTA+TGG - chr2_2:11284052-11284071 Msa0238030:intron 35.0%
CTGTGAAAAACCAGAAAACA+GGG + chr2_2:11284097-11284116 None:intergenic 35.0%
TCTGTGAAAAACCAGAAAAC+AGG + chr2_2:11284098-11284117 None:intergenic 35.0%
GTACTTGTTCCAATAATGTC+TGG - chr2_2:11284267-11284286 Msa0238030:intron 35.0%
!! AATGTCTGGTTCTTATCACA+TGG - chr2_2:11284281-11284300 Msa0238030:intron 35.0%
ACATGGAACTCAATGTCATT+AGG - chr2_2:11284298-11284317 Msa0238030:intron 35.0%
CTTATAGTTAATACCAGGGA+TGG + chr2_2:11284461-11284480 None:intergenic 35.0%
!! TTTGTATTCAGTTTGCTACG+TGG - chr2_2:11284524-11284543 Msa0238030:intron 35.0%
AGAGATAATTTCCCTATGCA+AGG - chr2_2:11284583-11284602 Msa0238030:intron 35.0%
AAAATGCAAGTCCTTGCATA+GGG + chr2_2:11284597-11284616 None:intergenic 35.0%
GAAGTGTGAAACGAATAGAA+GGG + chr2_2:11284693-11284712 None:intergenic 35.0%
! AGAAGTGTGAAACGAATAGA+AGG + chr2_2:11284694-11284713 None:intergenic 35.0%
!!! ATACTCTTTTTTCAGCTTGG+TGG - chr2_2:11284775-11284794 Msa0238030:intron 35.0%
CTGCTGAATAGCTAAATGAT+AGG - chr2_2:11284955-11284974 Msa0238030:five_prime_UTR 35.0%
!! ATTGTTATTTGTGTTCTGCG+AGG - chr2_2:11285083-11285102 Msa0238030:five_prime_UTR 35.0%
TTCAGCCTAGAAACAACAAA+CGG + chr2_2:11285150-11285169 None:intergenic 35.0%
TGAAGAAGATCGAAAAGGGT+AGG + chr2_2:11281729-11281748 None:intergenic 40.0%
TTAATCCTCCAAGATTTGCC+AGG + chr2_2:11281899-11281918 None:intergenic 40.0%
TGGCAAATCTTGGAGGATTA+AGG - chr2_2:11281898-11281917 Msa0238030:intron 40.0%
GGCAAATCTTGGAGGATTAA+GGG - chr2_2:11281899-11281918 Msa0238030:intron 40.0%
! GTCTTCGTCGGTTAAATCAA+GGG + chr2_2:11281949-11281968 None:intergenic 40.0%
!! ATTCACCATGGCTTTTTCCT+GGG - chr2_2:11281995-11282014 Msa0238030:intron 40.0%
AAGAAGAAGAGTGATCCTGA+AGG + chr2_2:11282027-11282046 None:intergenic 40.0%
CGACAATAACAGCAAGAAGA+AGG + chr2_2:11282052-11282071 None:intergenic 40.0%
!! TATGGGTTGATCGTGATCTT+GGG - chr2_2:11282255-11282274 Msa0238030:intron 40.0%
ATTAGAGAGAGTTGGGAACT+TGG - chr2_2:11282459-11282478 Msa0238030:intron 40.0%
TTAGAGAGAGTTGGGAACTT+GGG - chr2_2:11282460-11282479 Msa0238030:intron 40.0%
GACCTGTAGATGCTTTAGTA+AGG - chr2_2:11282543-11282562 Msa0238030:intron 40.0%
! CTCCTTACTAAAGCATCTAC+AGG + chr2_2:11282548-11282567 None:intergenic 40.0%
AGTAAGGAGAGTAGATGAGA+TGG - chr2_2:11282559-11282578 Msa0238030:intron 40.0%
AATCAGATCACTTGAGGCAA+AGG - chr2_2:11282594-11282613 Msa0238030:intron 40.0%
!! AAGCCTTATTCCACTAAGCA+GGG + chr2_2:11282721-11282740 None:intergenic 40.0%
GAAGAGGAAATATTGTGTGG+CGG - chr2_2:11282827-11282846 Msa0238030:intron 40.0%
ACTGTACCATGGCTAACATA+AGG - chr2_2:11282896-11282915 Msa0238030:intron 40.0%
CAACATCCTTATGTTAGCCA+TGG + chr2_2:11282905-11282924 None:intergenic 40.0%
! GATTTTTGACGTGGTTAAGC+TGG - chr2_2:11282972-11282991 Msa0238030:intron 40.0%
ATTGTAAGGTCCTTGTGTCA+TGG - chr2_2:11283214-11283233 Msa0238030:intron 40.0%
TTGTAAGGTCCTTGTGTCAT+GGG - chr2_2:11283215-11283234 Msa0238030:intron 40.0%
TTACATTCCCTTGACTGTCT+TGG - chr2_2:11283411-11283430 Msa0238030:intron 40.0%
CTTACAGTAAGAACTGAAGC+TGG + chr2_2:11283442-11283461 None:intergenic 40.0%
ACAATCCTAAGCAACACTGT+AGG + chr2_2:11283567-11283586 None:intergenic 40.0%
! GGCATTGGATAGTTATTGAG+TGG + chr2_2:11283804-11283823 None:intergenic 40.0%
GCGGCCGTAATGTTATTAAA+TGG + chr2_2:11283856-11283875 None:intergenic 40.0%
! ATTGGTTCAGACCATTCACT+TGG - chr2_2:11283898-11283917 Msa0238030:intron 40.0%
TGTCCCTAATCCTCATCATA+GGG - chr2_2:11284044-11284063 Msa0238030:intron 40.0%
GTCCATAATACCCTATGATG+AGG + chr2_2:11284057-11284076 None:intergenic 40.0%
AAAACCAGAAAACAGGGACA+GGG + chr2_2:11284091-11284110 None:intergenic 40.0%
AAAAACCAGAAAACAGGGAC+AGG + chr2_2:11284092-11284111 None:intergenic 40.0%
! TGGTTTTTCACAGATTTCGC+TGG - chr2_2:11284104-11284123 Msa0238030:intron 40.0%
! GGTTTTTCACAGATTTCGCT+GGG - chr2_2:11284105-11284124 Msa0238030:intron 40.0%
AAATGTCAGTGGTAGACTTC+AGG + chr2_2:11284223-11284242 None:intergenic 40.0%
TAATGAGAACAGAGAGGGAA+TGG - chr2_2:11284375-11284394 Msa0238030:intron 40.0%
!! TCAGTTTGCTACGTGGATAA+AGG - chr2_2:11284531-11284550 Msa0238030:intron 40.0%
CAAAATGCAAGTCCTTGCAT+AGG + chr2_2:11284598-11284617 None:intergenic 40.0%
!! TTGGTGGTGGTTATCTCTTT+GGG - chr2_2:11284791-11284810 Msa0238030:intron 40.0%
AACAGTTGCACCAATAGAGT+CGG + chr2_2:11284836-11284855 None:intergenic 40.0%
!! GAAGACCGTTTGTTGTTTCT+AGG - chr2_2:11285142-11285161 Msa0238030:five_prime_UTR 40.0%
TCAAACCTGGCAAATCTTGG+AGG - chr2_2:11281891-11281910 Msa0238030:intron 45.0%
! TCGTCGGTTAAATCAAGGGA+AGG + chr2_2:11281945-11281964 None:intergenic 45.0%
! CGTCTTCGTCGGTTAAATCA+AGG + chr2_2:11281950-11281969 None:intergenic 45.0%
!! GATTCACCATGGCTTTTTCC+TGG - chr2_2:11281994-11282013 Msa0238030:intron 45.0%
!! CTATGGGTTGATCGTGATCT+TGG - chr2_2:11282254-11282273 Msa0238030:intron 45.0%
!! ATGGGTTGATCGTGATCTTG+GGG - chr2_2:11282256-11282275 Msa0238030:intron 45.0%
TAGAGAGAGTTGGGAACTTG+GGG - chr2_2:11282461-11282480 Msa0238030:intron 45.0%
AGATGGTGCAAACTAGGGTT+AGG - chr2_2:11282498-11282517 Msa0238030:intron 45.0%
AAGGAGAGTAGATGAGATGG+AGG - chr2_2:11282562-11282581 Msa0238030:intron 45.0%
CTTATTCCACTAAGCAGGGT+CGG + chr2_2:11282717-11282736 None:intergenic 45.0%
!! CAAGCCTTATTCCACTAAGC+AGG + chr2_2:11282722-11282741 None:intergenic 45.0%
GTATCAACACCCATGACACA+AGG + chr2_2:11283227-11283246 None:intergenic 45.0%
! TGTGGGTTACGTGTATCTGT+TGG - chr2_2:11283342-11283361 Msa0238030:intron 45.0%
TGAGATATGGCACCTTTCCA+AGG - chr2_2:11283977-11283996 Msa0238030:intron 45.0%
TTAGGGACAGGTAAGAATGG+TGG + chr2_2:11284033-11284052 None:intergenic 45.0%
GGATTAGGGACAGGTAAGAA+TGG + chr2_2:11284036-11284055 None:intergenic 45.0%
CTATGATGAGGATTAGGGAC+AGG + chr2_2:11284045-11284064 None:intergenic 45.0%
CTGTCCCTAATCCTCATCAT+AGG - chr2_2:11284043-11284062 Msa0238030:intron 45.0%
TAAACGGCAGCATGCTTTGA+TGG + chr2_2:11284353-11284372 None:intergenic 45.0%
!!! CTCTTTTTTCAGCTTGGTGG+TGG - chr2_2:11284778-11284797 Msa0238030:intron 45.0%
!! CTTGGTGGTGGTTATCTCTT+TGG - chr2_2:11284790-11284809 Msa0238030:intron 45.0%
TATCTCTTTGGGCTTCCAGT+TGG - chr2_2:11284802-11284821 Msa0238030:intron 45.0%
GACTCTATTGGTGCAACTGT+TGG - chr2_2:11284835-11284854 Msa0238030:CDS 45.0%
GCTATTCAGCAGCAAGTAGT+GGG + chr2_2:11284947-11284966 None:intergenic 45.0%
AGCTATTCAGCAGCAAGTAG+TGG + chr2_2:11284948-11284967 None:intergenic 45.0%
ACGACACTCTTCGTCTTCGT+CGG + chr2_2:11281961-11281980 None:intergenic 50.0%
!! AAGACGAAGAGTGTCGTCCT+TGG - chr2_2:11281964-11281983 Msa0238030:intron 50.0%
ATGGTGAATCTTCGACGCCA+AGG + chr2_2:11281984-11282003 None:intergenic 50.0%
! TTGGCGTCGAAGATTCACCA+TGG - chr2_2:11281983-11282002 Msa0238030:intron 50.0%
AGAAGCCCAGGAAAAAGCCA+TGG + chr2_2:11282003-11282022 None:intergenic 50.0%
TTGATCGTGATCTTGGGGCA+TGG - chr2_2:11282261-11282280 Msa0238030:intron 50.0%
TGATCGTGATCTTGGGGCAT+GGG - chr2_2:11282262-11282281 Msa0238030:intron 50.0%
TTGCGAAGACTAGACGGGAT+AGG - chr2_2:11282421-11282440 Msa0238030:intron 50.0%
ACTAAGCAGGGTCGGATACA+TGG + chr2_2:11282709-11282728 None:intergenic 50.0%
ATGTATCCGACCCTGCTTAG+TGG - chr2_2:11282708-11282727 Msa0238030:intron 50.0%
CGACCCTGCTTAGTGGAATA+AGG - chr2_2:11282715-11282734 Msa0238030:intron 50.0%
! AGAGCTCTGACACTGTACCA+TGG - chr2_2:11282885-11282904 Msa0238030:intron 50.0%
TTGACGTGGTTAAGCTGGCT+AGG - chr2_2:11282977-11282996 Msa0238030:intron 50.0%
TGGTTAAGCTGGCTAGGTGA+AGG - chr2_2:11282983-11283002 Msa0238030:intron 50.0%
GGAACTGCCAAGACAGTCAA+GGG + chr2_2:11283421-11283440 None:intergenic 50.0%
TGGAACTGCCAAGACAGTCA+AGG + chr2_2:11283422-11283441 None:intergenic 50.0%
!! TGCTGCCTACAGTGTTGCTT+AGG - chr2_2:11283559-11283578 Msa0238030:intron 50.0%
ACCATTCACTTGGAACCTCC+AGG - chr2_2:11283908-11283927 Msa0238030:intron 50.0%
AAACATTACGAGAGGCAGCC+TGG + chr2_2:11283929-11283948 None:intergenic 50.0%
TATGGCACCTTTCCAAGGTG+AGG - chr2_2:11283982-11284001 Msa0238030:intron 50.0%
ATGGCACCTTTCCAAGGTGA+GGG - chr2_2:11283983-11284002 Msa0238030:intron 50.0%
TAAGAATGGTGGCAGGGAGT+AGG + chr2_2:11284022-11284041 None:intergenic 50.0%
GACAGGTAAGAATGGTGGCA+GGG + chr2_2:11284028-11284047 None:intergenic 50.0%
! TTCTCCCTGTCCCTGTTTTC+TGG - chr2_2:11284084-11284103 Msa0238030:intron 50.0%
GCAACGGCAAGTGTTATCGT+CGG + chr2_2:11284196-11284215 None:intergenic 50.0%
ACGATAACACTTGCCGTTGC+CGG - chr2_2:11284196-11284215 Msa0238030:intron 50.0%
TCAGTGGTAGACTTCAGGAC+CGG + chr2_2:11284218-11284237 None:intergenic 50.0%
AGTAGTTCTCCTGCAGCAGA+TGG - chr2_2:11284401-11284420 Msa0238030:intron 50.0%
CATTGCAAAGCTACCATCCC+TGG - chr2_2:11284445-11284464 Msa0238030:intron 50.0%
!! GGCTTTGTTGCCGACTCTAT+TGG - chr2_2:11284823-11284842 Msa0238030:CDS 50.0%
ATTGGTGCAACTGTTGGTGC+AGG - chr2_2:11284841-11284860 Msa0238030:CDS 50.0%
GCAGGAGCTGCATTTCTTCT+CGG - chr2_2:11284859-11284878 Msa0238030:CDS 50.0%
TTTCCTGGGCTTCTGCCTTC+AGG - chr2_2:11282009-11282028 Msa0238030:intron 55.0%
GATCGTGATCTTGGGGCATG+GGG - chr2_2:11282263-11282282 Msa0238030:intron 55.0%
ATCGTGATCTTGGGGCATGG+GGG - chr2_2:11282264-11282283 Msa0238030:intron 55.0%
GGCGGCGTAACTTACTAGCT+TGG - chr2_2:11282845-11282864 Msa0238030:intron 55.0%
GCCTGGAGGTTCCAAGTGAA+TGG + chr2_2:11283912-11283931 None:intergenic 55.0%
CACCTTTCCAAGGTGAGGGT+GGG - chr2_2:11283987-11284006 Msa0238030:intron 55.0%
ACCTTTCCAAGGTGAGGGTG+GGG - chr2_2:11283988-11284007 Msa0238030:intron 55.0%
GGACAGGTAAGAATGGTGGC+AGG + chr2_2:11284029-11284048 None:intergenic 55.0%
GTAGACTTCAGGACCGGCAA+CGG + chr2_2:11284212-11284231 None:intergenic 55.0%
GAGTCGGCAACAAAGCCAAC+TGG + chr2_2:11284820-11284839 None:intergenic 55.0%
GATCCTGAAGGCAGAAGCCC+AGG + chr2_2:11282015-11282034 None:intergenic 60.0%
CATTACGAGAGGCAGCCTGG+AGG + chr2_2:11283926-11283945 None:intergenic 60.0%
GCACCTTTCCAAGGTGAGGG+TGG - chr2_2:11283986-11284005 Msa0238030:intron 60.0%
TCCCCACCCTCACCTTGGAA+AGG + chr2_2:11283992-11284011 None:intergenic 60.0%
AGTACTCCCCACCCTCACCT+TGG + chr2_2:11283997-11284016 None:intergenic 60.0%
CTCCTGCAGCAGATGGTCAC+TGG - chr2_2:11284408-11284427 Msa0238030:intron 60.0%
GTCCAGTGACCATCTGCTGC+AGG + chr2_2:11284413-11284432 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 11281712 11285206 11281712 ID=Msa0238030;Name=Msa0238030
chr2_2 mRNA 11281712 11285206 11281712 ID=Msa0238030-mRNA-1;Parent=Msa0238030;Name=Msa0238030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=290|1|0.8|1|0.75|0.6|5|0|127
chr2_2 exon 11281712 11281780 11281712 ID=Msa0238030-mRNA-1:exon:4939;Parent=Msa0238030-mRNA-1
chr2_2 exon 11282030 11282128 11282030 ID=Msa0238030-mRNA-1:exon:4938;Parent=Msa0238030-mRNA-1
chr2_2 exon 11283462 11283516 11283462 ID=Msa0238030-mRNA-1:exon:4937;Parent=Msa0238030-mRNA-1
chr2_2 exon 11284621 11284682 11284621 ID=Msa0238030-mRNA-1:exon:4936;Parent=Msa0238030-mRNA-1
chr2_2 exon 11284821 11285206 11284821 ID=Msa0238030-mRNA-1:exon:4935;Parent=Msa0238030-mRNA-1
chr2_2 five_prime_UTR 11284917 11285206 11284917 ID=Msa0238030-mRNA-1:five_prime_utr;Parent=Msa0238030-mRNA-1
chr2_2 CDS 11284821 11284916 11284821 ID=Msa0238030-mRNA-1:cds;Parent=Msa0238030-mRNA-1
chr2_2 CDS 11284621 11284682 11284621 ID=Msa0238030-mRNA-1:cds;Parent=Msa0238030-mRNA-1
chr2_2 CDS 11283462 11283516 11283462 ID=Msa0238030-mRNA-1:cds;Parent=Msa0238030-mRNA-1
chr2_2 CDS 11282030 11282128 11282030 ID=Msa0238030-mRNA-1:cds;Parent=Msa0238030-mRNA-1
chr2_2 CDS 11281712 11281780 11281712 ID=Msa0238030-mRNA-1:cds;Parent=Msa0238030-mRNA-1
Gene Sequence

>Msa0238030

ATGGCTTTTTCCTGGGCTTCTGCCTTCAGGATCACTCTTCTTCTTCTCCTTCTTCTTGCTGTTATTGTCGCTTGTTTCACTCTTCCTATTGAAAAGATTATGAAGGACTTTCTACTATGGGTTGATCGTGATCTTGGGGCATGGGGGCCACTTGTTTTGGCTGTTGCTTACATTCCCTTGACTGTCTTGGCAGTTCCAGCTTCAGTTCTTACTCTTGGTGGTGGTTATCTCTTTGGGCTTCCAGTTGGCTTTGTTGCCGACTCTATTGGTGCAACTGTTGGTGCAGGAGCTGCATTTCTTCTCGGTAGAACAATTGGAAGACCGTTTGTTGTTTCTAGGCTGAAAGATTATCCAAAATTTAAATCAGTGGCAATTGCAATA

Protein sequence

>Msa0238030

MAFSWASAFRITLLLLLLLAVIVACFTLPIEKIMKDFLLWVDRDLGAWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGRPFVVSRLKDYPKFKSVAIAI