AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580180 MtrunA17_Chr8g0384191 99.620 263 1 0 35 297 827 1089 0.0 551
Msa0580180 MtrunA17_Chr3g0144371 42.045 264 147 5 35 296 1774 2033 7.52e-60 206
Msa0580180 MtrunA17_Chr3g0130091 92.473 93 7 0 35 127 209 301 6.52e-53 177
Msa0580180 MtrunA17_Chr3g0130091 94.872 78 4 0 219 296 322 399 4.36e-36 133
Msa0580180 MtrunA17_Chr5g0413431 33.603 247 151 6 37 280 555 791 4.21e-32 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580180 AT5G64070.1 96.198 263 10 0 35 297 859 1121 0.0 535
Msa0580180 AT5G09350.1 95.038 262 13 0 35 296 854 1115 2.97e-173 509
Msa0580180 AT1G49340.1 42.529 261 144 5 38 296 1770 2026 3.23e-59 204
Msa0580180 AT1G49340.2 42.529 261 144 5 38 296 1770 2026 3.23e-59 204
Msa0580180 AT1G49340.3 42.529 261 144 5 38 296 1763 2019 3.66e-59 204
Msa0580180 AT1G49340.4 42.529 261 144 5 38 296 1763 2019 3.66e-59 204
Msa0580180 AT1G51040.1 40.152 264 144 6 35 296 272 523 5.23e-56 189
Msa0580180 AT1G60490.1 32.389 247 154 6 37 280 561 797 6.81e-31 122

Find 109 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCATACATATTGATTT+TGG 0.147588 4_1:-85239295 Msa0580180:CDS
AGGTTTGATGACATTGTTTC+TGG 0.168756 4_1:-85237313 Msa0580180:three_prime_UTR
TAAACATCATTGAAGAATTT+TGG 0.172404 4_1:+85237409 None:intergenic
TCCCCTTCGTTCCATGTTAA+TGG 0.187954 4_1:-85237754 Msa0580180:three_prime_UTR
AGCTCACGTGTTAATTTAAA+AGG 0.213153 4_1:+85239226 None:intergenic
TCATATCTGTAATGTAAAAT+TGG 0.253286 4_1:-85237338 Msa0580180:three_prime_UTR
TGAGGGAGGGAAGGATTAAT+AGG 0.260943 4_1:-85237872 Msa0580180:three_prime_UTR
ATTTGACATTGTTGATATAT+TGG 0.265947 4_1:-85238002 Msa0580180:three_prime_UTR
CAACTTATTTCTCACTTCTA+TGG 0.281782 4_1:-85240839 Msa0580180:intron
ATATATTGGTTGTTCCATTT+TGG 0.298592 4_1:-85237988 Msa0580180:three_prime_UTR
ACACTGCATTATCAGCATTT+AGG 0.299493 4_1:+85237699 None:intergenic
TCAGTTAGCATTACATTTAG+AGG 0.322063 4_1:-85237940 Msa0580180:three_prime_UTR
CGTGCAAGCTTTGACCAAAA+TGG 0.327613 4_1:+85237974 None:intergenic
ATTAACCCCACCAGGTGAAT+TGG 0.346612 4_1:+85239261 None:intergenic
GTGACGGATGAAATTTGAAT+TGG 0.383330 4_1:-85237661 Msa0580180:three_prime_UTR
TGATTGCAGGCAGGAGCATC+TGG 0.384919 4_1:-85240867 Msa0580180:CDS
GAGGAACTTTGTCGAGAGTA+TGG 0.386545 4_1:-85239515 Msa0580180:CDS
TTATGTTGGTATCAGGATTC+GGG 0.388059 4_1:-85238294 Msa0580180:intron
AGAGTTGATTCTTCAATACT+TGG 0.389337 4_1:-85237442 Msa0580180:three_prime_UTR
TCTTCTTGTTGAGATGTTGC+AGG 0.395308 4_1:-85238906 Msa0580180:intron
GAGCACAGAACTACCGTATC+TGG 0.395767 4_1:+85239907 None:intergenic
GAAGTACACAAAACTTCATA+AGG 0.400506 4_1:+85239958 None:intergenic
AAGAAGCTGGTCTACCGCTT+TGG 0.404302 4_1:-85239987 Msa0580180:CDS
AAAGCGGTAGACCAGCTTCT+TGG 0.414927 4_1:+85239989 None:intergenic
TTGGCAGCAATGTGTCTCCT+TGG 0.415569 4_1:-85238115 Msa0580180:intron
GCATAACGGGAACCTCCTAT+TGG 0.419767 4_1:-85239329 Msa0580180:CDS
ACCTGGGCAAGTTTAAAACT+TGG 0.430414 4_1:+85239732 None:intergenic
TTGGATGTCGAGATGGGCTC+TGG 0.431502 4_1:-85237642 Msa0580180:three_prime_UTR
TGCTATCCAATTCACCTGGT+GGG 0.431809 4_1:-85239267 Msa0580180:CDS
TATGACCTTCTTCGTCCAAT+AGG 0.433611 4_1:+85239314 None:intergenic
AGGGAAGGATTAATAGGTGG+TGG 0.435961 4_1:-85237866 Msa0580180:three_prime_UTR
TCTTGATCTCAGCTGTTCAA+TGG 0.439659 4_1:-85237478 Msa0580180:three_prime_UTR
TTCACGTAAACTTGAGATGT+TGG 0.440679 4_1:+85239785 None:intergenic
TGCCCATGATCCGCTTCATA+TGG 0.442925 4_1:+85237540 None:intergenic
TAAAGAGTGGAGATGATTGC+AGG 0.444745 4_1:-85240880 Msa0580180:CDS
TCCCAATGTCAAGTTTGACT+TGG 0.448540 4_1:+85237238 None:intergenic
GCCAAGTCAAACTTGACATT+GGG 0.457147 4_1:-85237239 Msa0580180:three_prime_UTR
TCACGTAAACTTGAGATGTT+GGG 0.471503 4_1:+85239786 None:intergenic
AGACCATATGAAGCGGATCA+TGG 0.473979 4_1:-85237543 Msa0580180:three_prime_UTR
CCATCTCAGTTTAACAGAAG+AGG 0.477378 4_1:-85238217 Msa0580180:intron
CCTGGTGTGCTACTTTCTGC+AGG 0.481921 4_1:-85239482 Msa0580180:intron
TTGTTAACAAGGTGAAAGAT+AGG 0.483447 4_1:-85239351 Msa0580180:intron
TTAGCAGTAGCCTTGATGCT+TGG 0.485107 4_1:-85238080 Msa0580180:CDS
AGGTGAAAGATAGGCATAAC+GGG 0.489483 4_1:-85239342 Msa0580180:CDS
AACTTTGTCGAGAGTATGGC+AGG 0.494454 4_1:-85239511 Msa0580180:CDS
AAGTATTGAAGAATCAACTC+TGG 0.494950 4_1:+85237444 None:intergenic
CCTCTTCTGTTAAACTGAGA+TGG 0.503946 4_1:+85238217 None:intergenic
AAATAATCAAAGAACTCGCT+TGG 0.504543 4_1:+85239084 None:intergenic
TCTGTAATGTAAAATTGGTA+AGG 0.507360 4_1:-85237333 Msa0580180:three_prime_UTR
ATATAGATTATTGTAAAGAG+TGG 0.509673 4_1:-85240893 Msa0580180:intron
CTCCATTAACATGGAACGAA+GGG 0.512118 4_1:+85237752 None:intergenic
GTTGGAATCTTCTTTGTACC+AGG 0.517441 4_1:+85237825 None:intergenic
GTTAATGGAGCTCTGCTGCT+TGG 0.519487 4_1:-85237739 Msa0580180:three_prime_UTR
GACCATATGAAGCGGATCAT+GGG 0.520109 4_1:-85237542 Msa0580180:three_prime_UTR
ACGTATACCACCTTTAAAGC+AGG 0.521536 4_1:+85238266 None:intergenic
AGGTCACTAGTGGGAGTGGT+TGG 0.521721 4_1:-85237920 Msa0580180:three_prime_UTR
AGCCAAGTCAAACTTGACAT+TGG 0.523435 4_1:-85237240 Msa0580180:three_prime_UTR
CCTGCAGAAAGTAGCACACC+AGG 0.527564 4_1:+85239482 None:intergenic
TTTGAATTGGATGTCGAGAT+GGG 0.529738 4_1:-85237648 Msa0580180:three_prime_UTR
GCACATAACTATCAATTCAC+AGG 0.535049 4_1:+85237273 None:intergenic
GACCTTCTTCGTCCAATAGG+AGG 0.537264 4_1:+85239317 None:intergenic
CTTTGTACCAGGAGAAAATG+AGG 0.538349 4_1:+85237836 None:intergenic
CATGGGCAGACCATCGGTGT+TGG 0.543622 4_1:-85237525 Msa0580180:three_prime_UTR
GGCTTCTGTATATTTAAACC+TGG 0.543894 4_1:+85237792 None:intergenic
GCAGTATGATTATTATCAGA+GGG 0.545359 4_1:-85238049 Msa0580180:CDS
GAGCAGTTGGCCAACACCGA+TGG 0.548323 4_1:+85237515 None:intergenic
CTTTCAAAATTAACCCCACC+AGG 0.550999 4_1:+85239253 None:intergenic
AAGGTGAAAGATAGGCATAA+CGG 0.555281 4_1:-85239343 Msa0580180:CDS
TTAGAGGTCACTAGTGGGAG+TGG 0.556464 4_1:-85237924 Msa0580180:three_prime_UTR
CATTGAAACAATTCCAGATA+CGG 0.557273 4_1:-85239920 Msa0580180:intron
TAAATTACAGCGAGAGCAGT+TGG 0.558734 4_1:+85237502 None:intergenic
ATGCTATCCAATTCACCTGG+TGG 0.559536 4_1:-85239268 Msa0580180:CDS
GCCTTGATGCTTGGAGAACA+CGG 0.559755 4_1:-85238071 Msa0580180:CDS
TGATCTCAGCTGTTCAATGG+TGG 0.559959 4_1:-85237475 Msa0580180:three_prime_UTR
ATTTGAATTGGATGTCGAGA+TGG 0.560995 4_1:-85237649 Msa0580180:three_prime_UTR
CTGCATTATCAGCATTTAGG+AGG 0.561556 4_1:+85237702 None:intergenic
ATTAACACGTGAGCTTCTTG+AGG 0.576168 4_1:-85239218 Msa0580180:intron
GCGGATCATGGGCAGACCAT+CGG 0.577191 4_1:-85237531 Msa0580180:three_prime_UTR
GGCAGTATGATTATTATCAG+AGG 0.577932 4_1:-85238050 Msa0580180:CDS
GAGTGGAGATGATTGCAGGC+AGG 0.580847 4_1:-85240876 Msa0580180:CDS
ATGGTCTTTCAAATTGTACA+AGG 0.580975 4_1:+85237559 None:intergenic
CTGATTCATCTACAGTCTTG+TGG 0.581124 4_1:-85237610 Msa0580180:three_prime_UTR
AACCTCCTATTGGACGAAGA+AGG 0.582161 4_1:-85239319 Msa0580180:CDS
GCCGTGTTCTCCAAGCATCA+AGG 0.586685 4_1:+85238070 None:intergenic
TGGATGTCGAGATGGGCTCT+GGG 0.587761 4_1:-85237641 Msa0580180:three_prime_UTR
GCTATCCAATTCACCTGGTG+GGG 0.588178 4_1:-85239266 Msa0580180:CDS
AAGTACACAAAACTTCATAA+GGG 0.588591 4_1:+85239959 None:intergenic
GCAGCAGAGCTCCATTAACA+TGG 0.589794 4_1:+85237743 None:intergenic
AGTATTGAAGAATCAACTCT+GGG 0.590785 4_1:+85237445 None:intergenic
GAGTATGGCAGGATATTCCC+TGG 0.595927 4_1:-85239500 Msa0580180:CDS
GGGAAGGATTAATAGGTGGT+GGG 0.597467 4_1:-85237865 Msa0580180:three_prime_UTR
GGTTATGGATTCTGACGCTG+AGG 0.602322 4_1:-85239112 Msa0580180:CDS
TGGTATGACTCTGTATAGAA+CGG 0.602832 4_1:-85241025 Msa0580180:intron
TTCATGCTATCCAATTCACC+TGG 0.607344 4_1:-85239271 Msa0580180:CDS
CAAGAAAATGTCAATTACAC+AGG 0.614414 4_1:+85237379 None:intergenic
TTACATTTAGAGGTCACTAG+TGG 0.615027 4_1:-85237930 Msa0580180:three_prime_UTR
TGGAATTGTTTCAATGAGAG+CGG 0.625727 4_1:+85239927 None:intergenic
CGTATACCACCTTTAAAGCA+GGG 0.629980 4_1:+85238267 None:intergenic
CAGCATGCTTGCGACAAGTG+AGG 0.631589 4_1:+85238939 None:intergenic
ATTTGAAAGACCATATGAAG+CGG 0.632942 4_1:-85237550 Msa0580180:three_prime_UTR
TACATTTAGAGGTCACTAGT+GGG 0.639407 4_1:-85237929 Msa0580180:three_prime_UTR
GCTCCATTAACATGGAACGA+AGG 0.643229 4_1:+85237751 None:intergenic
GTTATGGATTCTGACGCTGA+GGG 0.643796 4_1:-85239111 Msa0580180:CDS
GGGAGGGAAGGATTAATAGG+TGG 0.676348 4_1:-85237869 Msa0580180:three_prime_UTR
TCCATTAACATGGAACGAAG+GGG 0.676727 4_1:+85237753 None:intergenic
GCTAATAAGAGAAAGAACCA+AGG 0.679649 4_1:+85238098 None:intergenic
TCATAAGGGCGCAGCCAAAG+CGG 0.681437 4_1:+85239973 None:intergenic
CTGCAGAAAGTAGCACACCA+GGG 0.720700 4_1:+85239483 None:intergenic
AAGACTGTAGATGAATCAGT+CGG 0.725328 4_1:+85237614 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAATCTATATAAAAAAA+AGG + chr4_1:85237450-85237469 None:intergenic 10.0%
!!! ATTAATGTTTTTATTAACAT+AGG + chr4_1:85238505-85238524 None:intergenic 10.0%
!! AAAATAATAGGTAAAAAATA+TGG + chr4_1:85239162-85239181 None:intergenic 10.0%
!!! TAAAAACATTAATGTTTTCT+AGG - chr4_1:85238512-85238531 Msa0580180:intron 15.0%
!!! GTTTTGAAATAATGTAAATT+GGG + chr4_1:85239923-85239942 None:intergenic 15.0%
!!! ATGTTTCTTTTTGTGATTAT+TGG - chr4_1:85237305-85237324 Msa0580180:three_prime_UTR 20.0%
!! AATTGTCATATAAAGTAATG+AGG + chr4_1:85237401-85237420 None:intergenic 20.0%
!! ATATAGATTATTGTAAAGAG+TGG - chr4_1:85237457-85237476 Msa0580180:three_prime_UTR 20.0%
!!! AGAAACTTTTTTCCAATAAA+AGG + chr4_1:85237609-85237628 None:intergenic 20.0%
!! AGGAATAAAATCAAATAACA+GGG + chr4_1:85237663-85237682 None:intergenic 20.0%
!! TATATTAACATCAACAACTT+TGG + chr4_1:85238219-85238238 None:intergenic 20.0%
!! GTTGTTGATGTTAATATATT+CGG - chr4_1:85238221-85238240 Msa0580180:CDS 20.0%
!! TTATACTTTGTAATGATTTC+TGG - chr4_1:85238692-85238711 Msa0580180:intron 20.0%
!! GAAATACAGAATATACAAAT+GGG + chr4_1:85238777-85238796 None:intergenic 20.0%
!! AGAAATACAGAATATACAAA+TGG + chr4_1:85238778-85238797 None:intergenic 20.0%
!!! CATATCATACATATTGATTT+TGG - chr4_1:85239055-85239074 Msa0580180:intron 20.0%
!! AGGGTGTATAATAAAATAAT+AGG + chr4_1:85239174-85239193 None:intergenic 20.0%
!! CAATATAAATGTAGTAAACA+TGG + chr4_1:85239886-85239905 None:intergenic 20.0%
!!! GGTTTTGAAATAATGTAAAT+TGG + chr4_1:85239924-85239943 None:intergenic 20.0%
!! AAATCCAATAATATATGTAC+AGG + chr4_1:85240013-85240032 None:intergenic 20.0%
!! AACATAACCATAAAAAGAAA+AGG + chr4_1:85240043-85240062 None:intergenic 20.0%
!!! TTTTCTTTTTATGGTTATGT+TGG - chr4_1:85240042-85240061 Msa0580180:intron 20.0%
!!! GTGTTGTATTGTATTTTTTT+TGG - chr4_1:85240216-85240235 Msa0580180:intron 20.0%
!! ATTTGACATTGTTGATATAT+TGG - chr4_1:85240348-85240367 Msa0580180:intron 20.0%
!!! TTAAATGACTTATGTTTTTG+AGG - chr4_1:85240460-85240479 Msa0580180:intron 20.0%
!!! TAAATGACTTATGTTTTTGA+GGG - chr4_1:85240461-85240480 Msa0580180:intron 20.0%
!!! TAAACATCATTGAAGAATTT+TGG + chr4_1:85240944-85240963 None:intergenic 20.0%
!!! ATTTTACATTACAGATATGA+AGG + chr4_1:85241012-85241031 None:intergenic 20.0%
!! TCATATCTGTAATGTAAAAT+TGG - chr4_1:85241012-85241031 Msa0580180:intron 20.0%
! ATAAAAGGAACATCAATGTA+AGG + chr4_1:85237594-85237613 None:intergenic 25.0%
!! TACATTGATGTTCCTTTTAT+TGG - chr4_1:85237594-85237613 Msa0580180:three_prime_UTR 25.0%
! GAGGAATAAAATCAAATAAC+AGG + chr4_1:85237664-85237683 None:intergenic 25.0%
!! TAGAATTCTTCAGTATTGAA+GGG + chr4_1:85237811-85237830 None:intergenic 25.0%
!! ATAGAATTCTTCAGTATTGA+AGG + chr4_1:85237812-85237831 None:intergenic 25.0%
!!! TCTCAGTTTAATTTTCATTG+TGG - chr4_1:85238079-85238098 Msa0580180:CDS 25.0%
!! TTAATTTTCATTGTGGAATG+TGG - chr4_1:85238086-85238105 Msa0580180:CDS 25.0%
! GCAATAGTTTCAAATTAAAG+TGG - chr4_1:85238137-85238156 Msa0580180:intron 25.0%
! TGATGTTAATATATTCGGTT+TGG - chr4_1:85238226-85238245 Msa0580180:CDS 25.0%
! GATGTTAATATATTCGGTTT+GGG - chr4_1:85238227-85238246 Msa0580180:CDS 25.0%
! AAGTACACAAAACTTCATAA+GGG + chr4_1:85238394-85238413 None:intergenic 25.0%
!! TTTGTAATGATTTCTGGATT+GGG - chr4_1:85238698-85238717 Msa0580180:intron 25.0%
! TCTGCTTTACTTTCATAATT+TGG - chr4_1:85238795-85238814 Msa0580180:intron 25.0%
! AACAATAATGTGATTATGCT+AGG - chr4_1:85239217-85239236 Msa0580180:intron 25.0%
!!! CGAGTTCTTTGATTATTTTA+AGG - chr4_1:85239271-85239290 Msa0580180:CDS 25.0%
!! TTGTAATATTTTCGTGCTAT+TGG - chr4_1:85239688-85239707 Msa0580180:intron 25.0%
! TAATGTAAATTGGGTAGTTA+TGG + chr4_1:85239914-85239933 None:intergenic 25.0%
! AATGCCTGTACATATATTAT+TGG - chr4_1:85240006-85240025 Msa0580180:intron 25.0%
! AAGACAAACAACAGTAATAT+TGG + chr4_1:85240161-85240180 None:intergenic 25.0%
!!! ATATATTGGTTGTTCCATTT+TGG - chr4_1:85240362-85240381 Msa0580180:intron 25.0%
! TCTGTAATGTAAAATTGGTA+AGG - chr4_1:85241017-85241036 Msa0580180:intron 25.0%
! CAACTTATTTCTCACTTCTA+TGG - chr4_1:85237511-85237530 Msa0580180:three_prime_UTR 30.0%
! TTATTTCTCACTTCTATGGT+AGG - chr4_1:85237515-85237534 Msa0580180:three_prime_UTR 30.0%
ATAAGACAAATTCACAGGAT+TGG + chr4_1:85237990-85238009 None:intergenic 30.0%
TCTTATGTCGACAATGATAA+AGG - chr4_1:85238004-85238023 Msa0580180:three_prime_UTR 30.0%
GACAATGATAAAGGAAAGAT+TGG - chr4_1:85238013-85238032 Msa0580180:exon 30.0%
GGAATGTGGATTTATATACT+TGG - chr4_1:85238100-85238119 Msa0580180:CDS 30.0%
GAAGTACACAAAACTTCATA+AGG + chr4_1:85238395-85238414 None:intergenic 30.0%
CATTGAAACAATTCCAGATA+CGG - chr4_1:85238430-85238449 Msa0580180:intron 30.0%
! CTTTGTAATGATTTCTGGAT+TGG - chr4_1:85238697-85238716 Msa0580180:intron 30.0%
AGAATATACAAATGGGAAAG+GGG + chr4_1:85238770-85238789 None:intergenic 30.0%
CAGAATATACAAATGGGAAA+GGG + chr4_1:85238771-85238790 None:intergenic 30.0%
ACAGAATATACAAATGGGAA+AGG + chr4_1:85238772-85238791 None:intergenic 30.0%
AGGTGAGGAACTTTATTAAT+TGG - chr4_1:85238888-85238907 Msa0580180:intron 30.0%
!! TTTTTCCTGTCTTGTTAACA+AGG - chr4_1:85238988-85239007 Msa0580180:intron 30.0%
TTGTTAACAAGGTGAAAGAT+AGG - chr4_1:85238999-85239018 Msa0580180:intron 30.0%
AGCTCACGTGTTAATTTAAA+AGG + chr4_1:85239127-85239146 None:intergenic 30.0%
TCATATTGACACTTGAAACA+GGG + chr4_1:85239193-85239212 None:intergenic 30.0%
ATCATATTGACACTTGAAAC+AGG + chr4_1:85239194-85239213 None:intergenic 30.0%
! TGTTTCAAGTGTCAATATGA+TGG - chr4_1:85239193-85239212 Msa0580180:intron 30.0%
AATGTGATTATGCTAGGTTA+TGG - chr4_1:85239223-85239242 Msa0580180:CDS 30.0%
AAATAATCAAAGAACTCGCT+TGG + chr4_1:85239269-85239288 None:intergenic 30.0%
TATGATGAGACAAAGAACAT+GGG + chr4_1:85239522-85239541 None:intergenic 30.0%
TTATGATGAGACAAAGAACA+TGG + chr4_1:85239523-85239542 None:intergenic 30.0%
!! ATGGTGGATGTAAAAACAAT+GGG + chr4_1:85239646-85239665 None:intergenic 30.0%
AATATTACAAAGCACAATGC+AGG + chr4_1:85239678-85239697 None:intergenic 30.0%
! AAAAGAGCATATGAGTGAAT+CGG - chr4_1:85239769-85239788 Msa0580180:CDS 30.0%
AGTGAATCGGTCTTAAATAA+TGG - chr4_1:85239782-85239801 Msa0580180:CDS 30.0%
!! TATGCTTTTGCTAGTTTAAG+GGG + chr4_1:85239948-85239967 None:intergenic 30.0%
!! GTATGCTTTTGCTAGTTTAA+GGG + chr4_1:85239949-85239968 None:intergenic 30.0%
! TGCTGAACCTTTTCTTTTTA+TGG - chr4_1:85240033-85240052 Msa0580180:intron 30.0%
TTTATGGTTATGTTGGTATC+AGG - chr4_1:85240049-85240068 Msa0580180:intron 30.0%
! TTCTTAACTGCAAGATGTTT+TGG - chr4_1:85240179-85240198 Msa0580180:intron 30.0%
GCAGTATGATTATTATCAGA+GGG - chr4_1:85240301-85240320 Msa0580180:intron 30.0%
!!! TATTATCAGAGGGTTTTGAA+TGG - chr4_1:85240311-85240330 Msa0580180:intron 30.0%
TCAGTTAGCATTACATTTAG+AGG - chr4_1:85240410-85240429 Msa0580180:intron 30.0%
AGGGGAAAATAAAAAAGATC+AGG + chr4_1:85240582-85240601 None:intergenic 30.0%
!!! TACAGTGATTTTTAGTGTGA+CGG - chr4_1:85240673-85240692 Msa0580180:intron 30.0%
ATGGTCTTTCAAATTGTACA+AGG + chr4_1:85240794-85240813 None:intergenic 30.0%
ATTTGAAAGACCATATGAAG+CGG - chr4_1:85240800-85240819 Msa0580180:intron 30.0%
! AGTATTGAAGAATCAACTCT+GGG + chr4_1:85240908-85240927 None:intergenic 30.0%
!! AAGTATTGAAGAATCAACTC+TGG + chr4_1:85240909-85240928 None:intergenic 30.0%
! AGAGTTGATTCTTCAATACT+TGG - chr4_1:85240908-85240927 Msa0580180:intron 30.0%
CAAGAAAATGTCAATTACAC+AGG + chr4_1:85240974-85240993 None:intergenic 30.0%
! CTGTGTAATTGACATTTTCT+TGG - chr4_1:85240972-85240991 Msa0580180:intron 30.0%
TGGTATGACTCTGTATAGAA+CGG - chr4_1:85237325-85237344 Msa0580180:three_prime_UTR 35.0%
!! GGTTGGCTTTAGTTCTATAT+AGG - chr4_1:85237346-85237365 Msa0580180:three_prime_UTR 35.0%
! GACAATTCTTTTGAGCATGT+TGG - chr4_1:85237414-85237433 Msa0580180:three_prime_UTR 35.0%
AACAGGGAAATCAACCATAT+GGG + chr4_1:85237647-85237666 None:intergenic 35.0%
TAACAGGGAAATCAACCATA+TGG + chr4_1:85237648-85237667 None:intergenic 35.0%
ATGCATGATACATTGCAGAT+AGG + chr4_1:85237716-85237735 None:intergenic 35.0%
GAAGAAACGAAAATTGCACA+TGG + chr4_1:85237760-85237779 None:intergenic 35.0%
! AATTCTTCAGTATTGAAGGG+AGG + chr4_1:85237808-85237827 None:intergenic 35.0%
TCAATTTATGCATGACCAAC+AGG + chr4_1:85237856-85237875 None:intergenic 35.0%
TCCCACAAGATTATGGTATT+GGG - chr4_1:85237935-85237954 Msa0580180:three_prime_UTR 35.0%
ACCCAATACCATAATCTTGT+GGG + chr4_1:85237939-85237958 None:intergenic 35.0%
TCGACATAAGACAAATTCAC+AGG + chr4_1:85237995-85238014 None:intergenic 35.0%
! ATCAACAACTTTGGTGCATT+CGG + chr4_1:85238210-85238229 None:intergenic 35.0%
TACGCTTTGCTTAAAATCAC+TGG - chr4_1:85238309-85238328 Msa0580180:intron 35.0%
ACGCTTTGCTTAAAATCACT+GGG - chr4_1:85238310-85238329 Msa0580180:intron 35.0%
! CTAGATATTTTCCAAGAAGC+TGG - chr4_1:85238350-85238369 Msa0580180:intron 35.0%
TGGAATTGTTTCAATGAGAG+CGG + chr4_1:85238426-85238445 None:intergenic 35.0%
TCACGTAAACTTGAGATGTT+GGG + chr4_1:85238567-85238586 None:intergenic 35.0%
TTCACGTAAACTTGAGATGT+TGG + chr4_1:85238568-85238587 None:intergenic 35.0%
TCTGCATCTCTAAATTACCT+GGG + chr4_1:85238637-85238656 None:intergenic 35.0%
ATCTGCATCTCTAAATTACC+TGG + chr4_1:85238638-85238657 None:intergenic 35.0%
AATATACAAATGGGAAAGGG+GGG + chr4_1:85238768-85238787 None:intergenic 35.0%
GAATATACAAATGGGAAAGG+GGG + chr4_1:85238769-85238788 None:intergenic 35.0%
AACAAGACAGGAAAAAGAGT+CGG + chr4_1:85238984-85239003 None:intergenic 35.0%
TTTCACCTTGTTAACAAGAC+AGG + chr4_1:85238996-85239015 None:intergenic 35.0%
AAGGTGAAAGATAGGCATAA+CGG - chr4_1:85239007-85239026 Msa0580180:intron 35.0%
TGCATAAAACCTGGATTACA+TGG + chr4_1:85239381-85239400 None:intergenic 35.0%
!! ATCCAGGTTTTATGCATTCA+AGG - chr4_1:85239385-85239404 Msa0580180:intron 35.0%
! GTCAGCTTTATGTAGTTCTA+TGG - chr4_1:85239477-85239496 Msa0580180:intron 35.0%
!! ATCTTACTGTTCTAAGAAGC+TGG + chr4_1:85239555-85239574 None:intergenic 35.0%
AGCTTCTTAGAACAGTAAGA+TGG - chr4_1:85239554-85239573 Msa0580180:intron 35.0%
!! CATGGTGGATGTAAAAACAA+TGG + chr4_1:85239647-85239666 None:intergenic 35.0%
! GACTCTGGCTAACATAATTT+TGG - chr4_1:85239733-85239752 Msa0580180:intron 35.0%
!! ATGCTTTTGCTAGTTTAAGG+GGG + chr4_1:85239947-85239966 None:intergenic 35.0%
!! CGTATGCTTTTGCTAGTTTA+AGG + chr4_1:85239950-85239969 None:intergenic 35.0%
GTTATGTTGGTATCAGGATT+CGG - chr4_1:85240055-85240074 Msa0580180:intron 35.0%
TTATGTTGGTATCAGGATTC+GGG - chr4_1:85240056-85240075 Msa0580180:intron 35.0%
!! TAACTGCAAGATGTTTTGGA+TGG - chr4_1:85240183-85240202 Msa0580180:intron 35.0%
!! AACTGCAAGATGTTTTGGAT+GGG - chr4_1:85240184-85240203 Msa0580180:intron 35.0%
!! TGTTTTGGATGGGATTTTGA+TGG - chr4_1:85240194-85240213 Msa0580180:intron 35.0%
GCTAATAAGAGAAAGAACCA+AGG + chr4_1:85240255-85240274 None:intergenic 35.0%
GGCAGTATGATTATTATCAG+AGG - chr4_1:85240300-85240319 Msa0580180:intron 35.0%
TTACATTTAGAGGTCACTAG+TGG - chr4_1:85240420-85240439 Msa0580180:intron 35.0%
TACATTTAGAGGTCACTAGT+GGG - chr4_1:85240421-85240440 Msa0580180:intron 35.0%
!! ATGACTTATGTTTTTGAGGG+AGG - chr4_1:85240464-85240483 Msa0580180:intron 35.0%
!! TGACTTATGTTTTTGAGGGA+GGG - chr4_1:85240465-85240484 Msa0580180:intron 35.0%
ATTCCAACTTGTCAAAAACC+AGG - chr4_1:85240540-85240559 Msa0580180:intron 35.0%
!! AAACCTGGTTTTTGACAAGT+TGG + chr4_1:85240546-85240565 None:intergenic 35.0%
GGCTTCTGTATATTTAAACC+TGG + chr4_1:85240561-85240580 None:intergenic 35.0%
ACACTGCATTATCAGCATTT+AGG + chr4_1:85240654-85240673 None:intergenic 35.0%
!! GTGACGGATGAAATTTGAAT+TGG - chr4_1:85240689-85240708 Msa0580180:intron 35.0%
ATTTGAATTGGATGTCGAGA+TGG - chr4_1:85240701-85240720 Msa0580180:intron 35.0%
TTTGAATTGGATGTCGAGAT+GGG - chr4_1:85240702-85240721 Msa0580180:intron 35.0%
AAGACTGTAGATGAATCAGT+CGG + chr4_1:85240739-85240758 None:intergenic 35.0%
! AGGTTTGATGACATTGTTTC+TGG - chr4_1:85241037-85241056 Msa0580180:CDS 35.0%
GCACATAACTATCAATTCAC+AGG + chr4_1:85241080-85241099 None:intergenic 35.0%
ATGACTCTGTATAGAACGGT+TGG - chr4_1:85237329-85237348 Msa0580180:three_prime_UTR 40.0%
TAAAGAGTGGAGATGATTGC+AGG - chr4_1:85237470-85237489 Msa0580180:three_prime_UTR 40.0%
TTTCTCACTTCTATGGTAGG+TGG - chr4_1:85237518-85237537 Msa0580180:three_prime_UTR 40.0%
CCATATGGGAGCTTTCTAAT+TGG + chr4_1:85237633-85237652 None:intergenic 40.0%
CCAATTAGAAAGCTCCCATA+TGG - chr4_1:85237630-85237649 Msa0580180:three_prime_UTR 40.0%
TATTCCTCCCAGAACATGTA+AGG - chr4_1:85237676-85237695 Msa0580180:three_prime_UTR 40.0%
CATGATACATTGCAGATAGG+AGG + chr4_1:85237713-85237732 None:intergenic 40.0%
TCGAATAACAGTCATCTTCC+TGG - chr4_1:85237781-85237800 Msa0580180:three_prime_UTR 40.0%
TTTGTAAATGCCACTCCTGT+TGG - chr4_1:85237838-85237857 Msa0580180:three_prime_UTR 40.0%
CTCCCACAAGATTATGGTAT+TGG - chr4_1:85237934-85237953 Msa0580180:three_prime_UTR 40.0%
GACCCAATACCATAATCTTG+TGG + chr4_1:85237940-85237959 None:intergenic 40.0%
TATTGGGTCCACTTTACTTC+TGG - chr4_1:85237951-85237970 Msa0580180:three_prime_UTR 40.0%
ATTGGGTCCACTTTACTTCT+GGG - chr4_1:85237952-85237971 Msa0580180:three_prime_UTR 40.0%
! AAGCAGAGACTTTTGCATAC+TGG + chr4_1:85238286-85238305 None:intergenic 40.0%
!!! TCCAAGTTTTAAACTTGCCC+AGG - chr4_1:85238617-85238636 Msa0580180:intron 40.0%
! ACCTGGGCAAGTTTAAAACT+TGG + chr4_1:85238621-85238640 None:intergenic 40.0%
ATATACAAATGGGAAAGGGG+GGG + chr4_1:85238767-85238786 None:intergenic 40.0%
GGATACTTTCTTTGTCTCAG+AGG - chr4_1:85238816-85238835 Msa0580180:intron 40.0%
AGGTGAAAGATAGGCATAAC+GGG - chr4_1:85239008-85239027 Msa0580180:intron 40.0%
TATGACCTTCTTCGTCCAAT+AGG + chr4_1:85239039-85239058 None:intergenic 40.0%
TTCATGCTATCCAATTCACC+TGG - chr4_1:85239079-85239098 Msa0580180:intron 40.0%
CTTTCAAAATTAACCCCACC+AGG + chr4_1:85239100-85239119 None:intergenic 40.0%
ATTAACACGTGAGCTTCTTG+AGG - chr4_1:85239132-85239151 Msa0580180:intron 40.0%
TTGCTTTGTCCATGTAATCC+AGG - chr4_1:85239369-85239388 Msa0580180:intron 40.0%
AGCCTTGAATGCATAAAACC+TGG + chr4_1:85239390-85239409 None:intergenic 40.0%
TCTTCTTGTTGAGATGTTGC+AGG - chr4_1:85239444-85239463 Msa0580180:intron 40.0%
! GCTTGTGAAAAGCGTAATCT+TGG + chr4_1:85239584-85239603 None:intergenic 40.0%
TTACAAAGCACAATGCAGGA+AGG + chr4_1:85239674-85239693 None:intergenic 40.0%
!! TGCTTTTGCTAGTTTAAGGG+GGG + chr4_1:85239946-85239965 None:intergenic 40.0%
!! CGTATACCACCTTTAAAGCA+GGG + chr4_1:85240086-85240105 None:intergenic 40.0%
!! ACGTATACCACCTTTAAAGC+AGG + chr4_1:85240087-85240106 None:intergenic 40.0%
CCTCTTCTGTTAAACTGAGA+TGG + chr4_1:85240136-85240155 None:intergenic 40.0%
CCATCTCAGTTTAACAGAAG+AGG - chr4_1:85240133-85240152 Msa0580180:intron 40.0%
!! CATTTTGGTCAAAGCTTGCA+CGG - chr4_1:85240377-85240396 Msa0580180:intron 40.0%
!! TTATGTTTTTGAGGGAGGGA+AGG - chr4_1:85240469-85240488 Msa0580180:intron 40.0%
CTTTGTACCAGGAGAAAATG+AGG + chr4_1:85240517-85240536 None:intergenic 40.0%
GTTGGAATCTTCTTTGTACC+AGG + chr4_1:85240528-85240547 None:intergenic 40.0%
TCCATTAACATGGAACGAAG+GGG + chr4_1:85240600-85240619 None:intergenic 40.0%
CTCCATTAACATGGAACGAA+GGG + chr4_1:85240601-85240620 None:intergenic 40.0%
CTGCATTATCAGCATTTAGG+AGG + chr4_1:85240651-85240670 None:intergenic 40.0%
CTGATTCATCTACAGTCTTG+TGG - chr4_1:85240740-85240759 Msa0580180:intron 40.0%
TAAATTACAGCGAGAGCAGT+TGG + chr4_1:85240851-85240870 None:intergenic 40.0%
TCTTGATCTCAGCTGTTCAA+TGG - chr4_1:85240872-85240891 Msa0580180:CDS 40.0%
AGCCAAGTCAAACTTGACAT+TGG - chr4_1:85241110-85241129 Msa0580180:CDS 40.0%
CCTAGAGCCTTACATGTTCT+GGG + chr4_1:85237686-85237705 None:intergenic 45.0%
ACCTAGAGCCTTACATGTTC+TGG + chr4_1:85237687-85237706 None:intergenic 45.0%
!! AGAACATGTAAGGCTCTAGG+TGG - chr4_1:85237686-85237705 Msa0580180:three_prime_UTR 45.0%
TTATGCATGACCAACAGGAG+TGG + chr4_1:85237851-85237870 None:intergenic 45.0%
TGTGATGTCCGACCTAACAT+GGG - chr4_1:85237896-85237915 Msa0580180:three_prime_UTR 45.0%
TTACCTAGCCCATGTTAGGT+CGG + chr4_1:85237907-85237926 None:intergenic 45.0%
TCGTTTACCTAGCCCATGTT+AGG + chr4_1:85237911-85237930 None:intergenic 45.0%
CGAGTTCTCCCACAAGATTA+TGG - chr4_1:85237928-85237947 Msa0580180:three_prime_UTR 45.0%
ACAACAGCCCAGAAGTAAAG+TGG + chr4_1:85237962-85237981 None:intergenic 45.0%
GACACGCATTCTTAGAGTGT+TGG + chr4_1:85238054-85238073 None:intergenic 45.0%
GAGGAACTTTGTCGAGAGTA+TGG - chr4_1:85238835-85238854 Msa0580180:intron 45.0%
! AACTTTGTCGAGAGTATGGC+AGG - chr4_1:85238839-85238858 Msa0580180:intron 45.0%
AACCTCCTATTGGACGAAGA+AGG - chr4_1:85239031-85239050 Msa0580180:intron 45.0%
ATGCTATCCAATTCACCTGG+TGG - chr4_1:85239082-85239101 Msa0580180:CDS 45.0%
TGCTATCCAATTCACCTGGT+GGG - chr4_1:85239083-85239102 Msa0580180:CDS 45.0%
ATTAACCCCACCAGGTGAAT+TGG + chr4_1:85239092-85239111 None:intergenic 45.0%
GTTATGGATTCTGACGCTGA+GGG - chr4_1:85239239-85239258 Msa0580180:CDS 45.0%
! TACGCTTTTCACAAGCAACC+TGG - chr4_1:85239588-85239607 Msa0580180:intron 45.0%
CAGTCAGTAAACAGTTCACC+AGG + chr4_1:85239609-85239628 None:intergenic 45.0%
GAGTCTCTTTGCACAAGATG+TGG + chr4_1:85239718-85239737 None:intergenic 45.0%
CATCTTGTGCAAAGAGACTC+TGG - chr4_1:85239718-85239737 Msa0580180:intron 45.0%
!! GCTTTTGCTAGTTTAAGGGG+GGG + chr4_1:85239945-85239964 None:intergenic 45.0%
! TCGGGTTTTCCCTGCTTTAA+AGG - chr4_1:85240074-85240093 Msa0580180:intron 45.0%
!!! GGTTTTCCCTGCTTTAAAGG+TGG - chr4_1:85240077-85240096 Msa0580180:intron 45.0%
! TTAGCAGTAGCCTTGATGCT+TGG - chr4_1:85240270-85240289 Msa0580180:intron 45.0%
! CGTGCAAGCTTTGACCAAAA+TGG + chr4_1:85240379-85240398 None:intergenic 45.0%
TGAGGGAGGGAAGGATTAAT+AGG - chr4_1:85240478-85240497 Msa0580180:intron 45.0%
AGGGAAGGATTAATAGGTGG+TGG - chr4_1:85240484-85240503 Msa0580180:intron 45.0%
GGGAAGGATTAATAGGTGGT+GGG - chr4_1:85240485-85240504 Msa0580180:intron 45.0%
TCCCCTTCGTTCCATGTTAA+TGG - chr4_1:85240596-85240615 Msa0580180:intron 45.0%
GCTCCATTAACATGGAACGA+AGG + chr4_1:85240602-85240621 None:intergenic 45.0%
AGACCATATGAAGCGGATCA+TGG - chr4_1:85240807-85240826 Msa0580180:intron 45.0%
GACCATATGAAGCGGATCAT+GGG - chr4_1:85240808-85240827 Msa0580180:intron 45.0%
TGATCTCAGCTGTTCAATGG+TGG - chr4_1:85240875-85240894 Msa0580180:CDS 45.0%
!! AATAATCTATATAAAAAAAA+GGG + chr4_1:85237449-85237468 None:intergenic 5.0%
! AGAGCCTTACATGTTCTGGG+AGG + chr4_1:85237683-85237702 None:intergenic 50.0%
CCCAGAACATGTAAGGCTCT+AGG - chr4_1:85237683-85237702 Msa0580180:three_prime_UTR 50.0%
! TCAGTATTGAAGGGAGGTCC+AGG + chr4_1:85237802-85237821 None:intergenic 50.0%
GTGTGATGTCCGACCTAACA+TGG - chr4_1:85237895-85237914 Msa0580180:three_prime_UTR 50.0%
AAAGCGGTAGACCAGCTTCT+TGG + chr4_1:85238364-85238383 None:intergenic 50.0%
! AAGAAGCTGGTCTACCGCTT+TGG - chr4_1:85238363-85238382 Msa0580180:intron 50.0%
GAGCACAGAACTACCGTATC+TGG + chr4_1:85238446-85238465 None:intergenic 50.0%
GAGTATGGCAGGATATTCCC+TGG - chr4_1:85238850-85238869 Msa0580180:intron 50.0%
CTGCAGAAAGTAGCACACCA+GGG + chr4_1:85238870-85238889 None:intergenic 50.0%
!! TGTGCTACTTTCTGCAGGTG+AGG - chr4_1:85238873-85238892 Msa0580180:intron 50.0%
! GCATAACGGGAACCTCCTAT+TGG - chr4_1:85239021-85239040 Msa0580180:intron 50.0%
GACCTTCTTCGTCCAATAGG+AGG + chr4_1:85239036-85239055 None:intergenic 50.0%
GCTATCCAATTCACCTGGTG+GGG - chr4_1:85239084-85239103 Msa0580180:CDS 50.0%
GGTTATGGATTCTGACGCTG+AGG - chr4_1:85239238-85239257 Msa0580180:CDS 50.0%
ACAATGCAGGAAGGACAGCA+TGG + chr4_1:85239665-85239684 None:intergenic 50.0%
TTGGCAGCAATGTGTCTCCT+TGG - chr4_1:85240235-85240254 Msa0580180:intron 50.0%
GCCTTGATGCTTGGAGAACA+CGG - chr4_1:85240279-85240298 Msa0580180:intron 50.0%
TTAGAGGTCACTAGTGGGAG+TGG - chr4_1:85240426-85240445 Msa0580180:intron 50.0%
GGGAGGGAAGGATTAATAGG+TGG - chr4_1:85240481-85240500 Msa0580180:intron 50.0%
! GATGCTGCCTCATTTTCTCC+TGG - chr4_1:85240507-85240526 Msa0580180:intron 50.0%
GCAGCAGAGCTCCATTAACA+TGG + chr4_1:85240610-85240629 None:intergenic 50.0%
GTTAATGGAGCTCTGCTGCT+TGG - chr4_1:85240611-85240630 Msa0580180:intron 50.0%
TGCCCATGATCCGCTTCATA+TGG + chr4_1:85240813-85240832 None:intergenic 50.0%
GAGTGGAGATGATTGCAGGC+AGG - chr4_1:85237474-85237493 Msa0580180:three_prime_UTR 55.0%
!! TGATTGCAGGCAGGAGCATC+TGG - chr4_1:85237483-85237502 Msa0580180:three_prime_UTR 55.0%
TGTCCGACCTAACATGGGCT+AGG - chr4_1:85237901-85237920 Msa0580180:three_prime_UTR 55.0%
! TCATAAGGGCGCAGCCAAAG+CGG + chr4_1:85238380-85238399 None:intergenic 55.0%
CCTGCAGAAAGTAGCACACC+AGG + chr4_1:85238871-85238890 None:intergenic 55.0%
!! CCTGGTGTGCTACTTTCTGC+AGG - chr4_1:85238868-85238887 Msa0580180:intron 55.0%
CAGCATGCTTGCGACAAGTG+AGG + chr4_1:85239414-85239433 None:intergenic 55.0%
ATGCAGGAAGGACAGCATGG+TGG + chr4_1:85239662-85239681 None:intergenic 55.0%
GCCGTGTTCTCCAAGCATCA+AGG + chr4_1:85240283-85240302 None:intergenic 55.0%
AGGTCACTAGTGGGAGTGGT+TGG - chr4_1:85240430-85240449 Msa0580180:intron 55.0%
! TTGGATGTCGAGATGGGCTC+TGG - chr4_1:85240708-85240727 Msa0580180:intron 55.0%
! TGGATGTCGAGATGGGCTCT+GGG - chr4_1:85240709-85240728 Msa0580180:intron 55.0%
GCGGATCATGGGCAGACCAT+CGG - chr4_1:85240819-85240838 Msa0580180:intron 60.0%
CATGGGCAGACCATCGGTGT+TGG - chr4_1:85240825-85240844 Msa0580180:intron 60.0%
GAGCAGTTGGCCAACACCGA+TGG + chr4_1:85240838-85240857 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85237239 85241133 85237239 ID=Msa0580180;Name=Msa0580180
chr4_1 mRNA 85237239 85241133 85237239 ID=Msa0580180-mRNA-1;Parent=Msa0580180;Name=Msa0580180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.88|0.8|0.9|0.88|0.9|10|790|297
chr4_1 exon 85237239 85238130 85237239 ID=Msa0580180-mRNA-1:exon:31239;Parent=Msa0580180-mRNA-1
chr4_1 exon 85238218 85238301 85238218 ID=Msa0580180-mRNA-1:exon:31238;Parent=Msa0580180-mRNA-1
chr4_1 exon 85238907 85238981 85238907 ID=Msa0580180-mRNA-1:exon:31237;Parent=Msa0580180-mRNA-1
chr4_1 exon 85239080 85239133 85239080 ID=Msa0580180-mRNA-1:exon:31236;Parent=Msa0580180-mRNA-1
chr4_1 exon 85239219 85239362 85239219 ID=Msa0580180-mRNA-1:exon:31235;Parent=Msa0580180-mRNA-1
chr4_1 exon 85239483 85239536 85239483 ID=Msa0580180-mRNA-1:exon:31234;Parent=Msa0580180-mRNA-1
chr4_1 exon 85239734 85239838 85239734 ID=Msa0580180-mRNA-1:exon:31233;Parent=Msa0580180-mRNA-1
chr4_1 exon 85239921 85240018 85239921 ID=Msa0580180-mRNA-1:exon:31232;Parent=Msa0580180-mRNA-1
chr4_1 exon 85240840 85240909 85240840 ID=Msa0580180-mRNA-1:exon:31231;Parent=Msa0580180-mRNA-1
chr4_1 exon 85241026 85241133 85241026 ID=Msa0580180-mRNA-1:exon:31230;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85241026 85241133 85241026 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85240840 85240909 85240840 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85239921 85240018 85239921 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85239734 85239838 85239734 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85239483 85239536 85239483 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85239219 85239362 85239219 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85239080 85239133 85239080 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85238907 85238981 85238907 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85238218 85238301 85238218 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 CDS 85238029 85238130 85238029 ID=Msa0580180-mRNA-1:cds;Parent=Msa0580180-mRNA-1
chr4_1 three_prime_UTR 85237239 85238028 85237239 ID=Msa0580180-mRNA-1:three_prime_utr;Parent=Msa0580180-mRNA-1
Gene Sequence

>Msa0580180

ATGTCAATAAAGAATTCACATATTGAATTTAAGCAACAATTTCTTGTGTCAAAAGCTACAACTATCATGTTTCTTTTTGTGATTATTGGTATGACTCTGTATAGAACGATTATTGTAAAGAGTGGAGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATGATATTTTCCAAGAAGCTGGTCTACCGCTTTGGCTGCGCCCTTATGAAGTTTTGTGTACTTCTTCTTATACCGCTCTCATTGAAACAATTCCAGATACGGCTTCTCTACACTCAATCAAAAGTAGATATCCCAACATCTCAAGTTTACGTGAATTCTTTGATGCTAAATATGAAGAAAATTCTCCAAGTTTTAAACTTGCCCAGAGGAACTTTGTCGAGAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTGCAGGTGAAAGATAGGCATAACGGGAACCTCCTATTGGACGAAGAAGGTCATATCATACATATTGATTTTGGCTTCATGCTATCCAATTCACCTGGTGGGGTTAATTTTGAAAGTGCACCTTTTAAATTAACACGTGAGCTTCTTGAGGTTATGGATTCTGACGCTGAGGGTGTGCCAAGCGAGTTCTTTGATTATTTTAAGGTTTTATGCATTCAAGGCTTCCTCACTTGTCGCAAGCATGCTGAGCGTATTATTCTTCTTGTTGAGATGTTGCAGGATTCGGGTTTTCCCTGCTTTAAAGGTGGTATACGTACGATACAGAACTTACGAAAGCGATTCCATCTCAGTTTAACAGAAGAGCAATGTGTCTCCTTGGTTCTTTCTCTTATTAGCAGTAGCCTTGATGCTTGGAGAACACGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTGTGA

Protein sequence

>Msa0580180

MSIKNSHIEFKQQFLVSKATTIMFLFVIIGMTLYRTIIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTALIETIPDTASLHSIKSRYPNISSLREFFDAKYEENSPSFKLAQRNFVESMAGYSLVCYFLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGVPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGIRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL*