AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349740 MtrunA17_Chr3g0090051 94.836 581 21 3 1 573 1 580 0.0 1141
Msa1349740 MtrunA17_Chr7g0254111 31.961 413 267 5 141 548 39 442 5.00e-67 224
Msa1349740 MtrunA17_Chr6g0460811 32.676 355 233 3 204 553 79 432 1.25e-62 212
Msa1349740 MtrunA17_Chr5g0422761 28.247 308 183 7 255 536 150 445 1.46e-30 125
Msa1349740 MtrunA17_Chr1g0210161 27.922 308 184 7 255 536 156 451 5.79e-29 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349740 AT5G13760.1 59.437 604 171 7 1 568 1 566 0.0 707
Msa1349740 AT3G04440.2 29.130 460 297 10 116 564 10 451 1.19e-56 197
Msa1349740 AT3G03700.1 29.067 461 297 10 122 571 40 481 1.53e-56 197
Msa1349740 AT3G04440.1 29.067 461 297 10 122 571 40 481 1.98e-56 197
Msa1349740 AT5G17830.1 26.623 462 288 12 126 558 20 459 1.38e-36 142
Msa1349740 AT5G17830.2 27.751 418 268 11 155 558 41 438 1.44e-35 139
Msa1349740 AT1G25500.2 25.000 296 207 4 256 536 157 452 5.86e-18 87.4
Msa1349740 AT1G25500.3 25.000 296 207 4 256 536 99 394 9.66e-18 86.3
Msa1349740 AT1G25500.1 28.436 211 126 5 295 480 68 278 4.05e-15 77.0

Find 146 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATTCAAATCACTGAATT+TGG 0.146968 tig0010977:+60645 None:intergenic
CCATGTCTTCCTTCTCAAAT+AGG 0.235190 tig0010977:+59410 None:intergenic
ATTAAAAGACTAATTAAATT+AGG 0.240903 tig0010977:+58042 None:intergenic
CACCGTCGGTTGGAGGCTTT+TGG 0.251711 tig0010977:+60779 None:intergenic
GGAAGAAGGGTTAAGGGATT+TGG 0.258383 tig0010977:-62108 Msa1349740:CDS
GAATCTTGGAAGTGCTTGTT+TGG 0.268610 tig0010977:-60380 Msa1349740:CDS
ATTCTTCATTGGATACCTTT+TGG 0.272961 tig0010977:-59248 Msa1349740:intron
ATTGATAAAGATGACGTTAC+TGG 0.273773 tig0010977:+62399 None:intergenic
ATTCAAGTATTCAACTCTTT+TGG 0.277970 tig0010977:+58330 None:intergenic
GGCAAGGTGCAATTAGAAAA+TGG 0.286876 tig0010977:-60879 Msa1349740:CDS
TGAGAGCGTTGAGATTTCTT+AGG 0.291686 tig0010977:+61888 None:intergenic
TTGTTAATATAACGGTTAGT+AGG 0.320823 tig0010977:-60474 Msa1349740:CDS
GATTCTTGTGGATAACTATA+TGG 0.339387 tig0010977:-60597 Msa1349740:CDS
GGTTGTTGTGGTGGTGGTGG+TGG 0.343492 tig0010977:+61807 None:intergenic
CAAGAGCGATAGCTAGTAAT+TGG 0.344477 tig0010977:+61043 None:intergenic
ATTGGTGCTGGTGTTGGTAT+AGG 0.351324 tig0010977:+61846 None:intergenic
TATTGTTAGGTATGCGTAGA+AGG 0.352283 tig0010977:-58073 Msa1349740:three_prime_UTR
AATCTTGGAAGTGCTTGTTT+GGG 0.354656 tig0010977:-60379 Msa1349740:CDS
TGTTGCGCTCGTTGTTGTTT+GGG 0.356549 tig0010977:-60271 Msa1349740:CDS
ATTCTCAGCGCTTCAATTGT+TGG 0.359023 tig0010977:+60343 None:intergenic
CATCGCATTAGTGTTGAGTT+TGG 0.360394 tig0010977:-60524 Msa1349740:CDS
TCTTTACTCACATTCTTCAT+TGG 0.361425 tig0010977:-59259 Msa1349740:CDS
GAAAGAAGGAAGAAGGGTTA+AGG 0.363593 tig0010977:-62115 Msa1349740:CDS
CGTCAGGCTTTGTTGAAAAC+TGG 0.379912 tig0010977:-58658 Msa1349740:CDS
ACAATCCTCAAAGGGTTAGT+AGG 0.380125 tig0010977:+61948 None:intergenic
TTGTTGCGCTCGTTGTTGTT+TGG 0.382253 tig0010977:-60272 Msa1349740:CDS
GATATGAAAACTGCTCTTAG+TGG 0.384120 tig0010977:-58367 Msa1349740:three_prime_UTR
GTTGAAAACTGGTCGTGAAT+TGG 0.392489 tig0010977:-58647 Msa1349740:CDS
GGTGGTTGTTGTGGTGGTGG+TGG 0.393178 tig0010977:+61804 None:intergenic
TAATCCAGGGAATTAGAGAT+AGG 0.397214 tig0010977:-58490 Msa1349740:three_prime_UTR
CTAATTTCGTCATTTAATCC+AGG 0.410254 tig0010977:-58504 Msa1349740:three_prime_UTR
GTTATATCAGCATCTACTAT+TGG 0.412428 tig0010977:+59385 None:intergenic
GAGGAATGTTGTTAATATAA+CGG 0.414847 tig0010977:-60482 Msa1349740:CDS
TAAACCCTACTAACCCTTTG+AGG 0.414943 tig0010977:-61953 Msa1349740:CDS
TGTGGTGGTTGTTGTGGTGG+TGG 0.415395 tig0010977:+61801 None:intergenic
GGGTTAAGGGATTTGGAGAA+AGG 0.415418 tig0010977:-62101 Msa1349740:CDS
AGAGCGTTGACTCGGAATCT+TGG 0.415922 tig0010977:-60394 Msa1349740:CDS
ATATGGACTTTAGCAGTAGT+TGG 0.416090 tig0010977:-60580 Msa1349740:CDS
GGTGGTTGTGGAGTTTGAAT+TGG 0.416842 tig0010977:+61828 None:intergenic
GCGATTGGCAATGGCTTGTA+TGG 0.419165 tig0010977:-60733 Msa1349740:CDS
CAGATTCTTGTACTAGTCCT+TGG 0.419684 tig0010977:+60995 None:intergenic
TGTGGAGTTTGAATTGGTGC+TGG 0.421714 tig0010977:+61834 None:intergenic
AAAGAAGGAAGAAGGGTTAA+GGG 0.426076 tig0010977:-62114 Msa1349740:CDS
GCAATGGCTTGTATGGTTGT+TGG 0.427723 tig0010977:-60726 Msa1349740:CDS
ACTTACTACATGCTTGCGGC+TGG 0.429515 tig0010977:-60619 Msa1349740:CDS
CTTGGACCACAGAGGTTATG+AGG 0.433740 tig0010977:-60501 Msa1349740:CDS
AATCTTGATGGCTGAGGAAG+TGG 0.437026 tig0010977:-58291 Msa1349740:three_prime_UTR
AATGATGGAACTCCACCATA+TGG 0.446152 tig0010977:+58100 None:intergenic
GTGTTATTGTTGTAGCTGCT+TGG 0.447472 tig0010977:-59318 Msa1349740:CDS
TAAAACAATTAAAGATCGTC+AGG 0.449254 tig0010977:-58674 Msa1349740:CDS
ATGAAGGGTATAATGTTTCA+AGG 0.451587 tig0010977:-61986 Msa1349740:CDS
CATTAGTGTTGAGTTTGGCT+TGG 0.452587 tig0010977:-60519 Msa1349740:CDS
CGTTGAGATTTCTTAGGAGG+AGG 0.452943 tig0010977:+61894 None:intergenic
TCATAACAGATTGCAGCCTA+TGG 0.456525 tig0010977:-59469 Msa1349740:intron
TTTCAGAAATGGCAATAGTT+GGG 0.457931 tig0010977:-60233 Msa1349740:CDS
CATGTCTTCCTTCTCAAATA+GGG 0.466916 tig0010977:+59411 None:intergenic
CAAGGACTAGTACAAGAATC+TGG 0.467966 tig0010977:-60994 Msa1349740:CDS
CTGGCTTGAAGAGCCATCAT+TGG 0.473312 tig0010977:-58252 Msa1349740:three_prime_UTR
ACCTAACAATAAAATAATGA+TGG 0.478479 tig0010977:+58085 None:intergenic
TGTTAATATAACGGTTAGTA+GGG 0.478570 tig0010977:-60473 Msa1349740:CDS
TTAACATAAAATAAAACTCA+TGG 0.479267 tig0010977:+58006 None:intergenic
AGCTCAATTTGCTTCCTCAC+AGG 0.480823 tig0010977:-59361 Msa1349740:CDS
GTTTGAATTGGTGCTGGTGT+TGG 0.482355 tig0010977:+61840 None:intergenic
CCAATACAAAATTCCAATGA+TGG 0.490519 tig0010977:+58239 None:intergenic
GATTTGGAGAAAGGTGAAGT+TGG 0.491080 tig0010977:-62092 Msa1349740:CDS
GATGATGGAAAGAAGGAAGA+AGG 0.493045 tig0010977:-62122 Msa1349740:CDS
AAAGATGGATGATGGAAAGA+AGG 0.495208 tig0010977:-62129 Msa1349740:CDS
CTTCTTGAATTAAGTGTCAC+CGG 0.495904 tig0010977:+61105 None:intergenic
TGAAGAATGTGAGTAAAGAC+AGG 0.496211 tig0010977:+59263 None:intergenic
TTGTGATGTCTCTTGCAGCC+GGG 0.496627 tig0010977:-60819 Msa1349740:CDS
CAGATTGCAGCCTATGGAAG+AGG 0.497415 tig0010977:-59463 Msa1349740:CDS
AAGAATCTGGTTCTGTTAAG+AGG 0.500285 tig0010977:-60981 Msa1349740:CDS
AAAACCTATCTCTAATTCCC+TGG 0.500685 tig0010977:+58486 None:intergenic
GACTTAGAAGATATACTTCA+AGG 0.502776 tig0010977:-58606 Msa1349740:CDS
CAATCCTCAAAGGGTTAGTA+GGG 0.503463 tig0010977:+61949 None:intergenic
CTTGTGTTCAAGGGAGTCCA+AGG 0.503627 tig0010977:-61012 Msa1349740:CDS
CATACTTGTGGTGGTTGTTG+TGG 0.504711 tig0010977:+61795 None:intergenic
CAATAGTTGGGCATATGTAC+AGG 0.512027 tig0010977:-60221 Msa1349740:intron
GGAGCTAGAAAGATGGATGA+TGG 0.512342 tig0010977:-62137 Msa1349740:CDS
CTATTCATCACAATCCTCAA+AGG 0.517811 tig0010977:+61939 None:intergenic
TAATTTCGTCATTTAATCCA+GGG 0.518496 tig0010977:-58503 Msa1349740:three_prime_UTR
ACTAAGTAAATTCAAGATGA+AGG 0.521534 tig0010977:-58399 Msa1349740:three_prime_UTR
GAGCGTTGAGATTTCTTAGG+AGG 0.523480 tig0010977:+61891 None:intergenic
AAGCGCTGAGAATTGTTGCT+AGG 0.526914 tig0010977:-60333 Msa1349740:CDS
GCTTTCTGAGAGCGTTGACT+CGG 0.527234 tig0010977:-60402 Msa1349740:CDS
AAGTGAAGGAGCTAGAAAGA+TGG 0.528600 tig0010977:-62144 Msa1349740:CDS
TTTGTGATGTCTCTTGCAGC+CGG 0.528803 tig0010977:-60820 Msa1349740:CDS
TTCCTCACAGGAGTTTGTAG+TGG 0.532054 tig0010977:-59349 Msa1349740:CDS
TGAGATTTCTTAGGAGGAGG+AGG 0.532542 tig0010977:+61897 None:intergenic
TATTGGAATGAAATAAATGT+GGG 0.535970 tig0010977:-58222 Msa1349740:three_prime_UTR
TATTCATCACAATCCTCAAA+GGG 0.536329 tig0010977:+61940 None:intergenic
GAGAATGTTGCTCATGGTCA+TGG 0.538173 tig0010977:-62023 Msa1349740:CDS
TGCTTGCGGCTGGATTCTTG+TGG 0.540887 tig0010977:-60609 Msa1349740:CDS
GTATATCTTCTAAGTCCCCT+TGG 0.542647 tig0010977:+58613 None:intergenic
ACACCAACACCGTCGGTTGG+AGG 0.545410 tig0010977:+60772 None:intergenic
CTTCTAAGTCCCCTTGGTGT+AGG 0.546621 tig0010977:+58619 None:intergenic
AAAGTTGCAGCTTCCACTTG+TGG 0.550103 tig0010977:+60928 None:intergenic
ATCGCGTTGTATTACTTGAG+AGG 0.553720 tig0010977:-60448 Msa1349740:CDS
TAAACATGATATTACAAGGA+TGG 0.557418 tig0010977:+58156 None:intergenic
AGCGCTGAGAATTGTTGCTA+GGG 0.557666 tig0010977:-60332 Msa1349740:CDS
ATGATGGAAAGAAGGAAGAA+GGG 0.557742 tig0010977:-62121 Msa1349740:CDS
AAGCCTCCAACCGACGGTGT+TGG 0.558221 tig0010977:-60775 Msa1349740:CDS
TGGACCACAAGTCACTTTAG+TGG 0.568408 tig0010977:+58176 None:intergenic
ATCTTGGAAGTGCTTGTTTG+GGG 0.569876 tig0010977:-60378 Msa1349740:CDS
GAGCGATAGCTAGTAATTGG+TGG 0.570906 tig0010977:+61046 None:intergenic
ACTTGTGGTGGTTGTTGTGG+TGG 0.575399 tig0010977:+61798 None:intergenic
TGAAAACTGCTCTTAGTGGA+AGG 0.575553 tig0010977:-58363 Msa1349740:three_prime_UTR
TGTGAGGAAGCAAATTGAGC+TGG 0.579856 tig0010977:+59363 None:intergenic
GAAATTAATTACATGTTCAG+TGG 0.579891 tig0010977:+62298 None:intergenic
TGTTAGGTGGATGAAAGTGA+AGG 0.579987 tig0010977:-62158 Msa1349740:intron
GTATTGGAATGAAATAAATG+TGG 0.585250 tig0010977:-58223 Msa1349740:three_prime_UTR
TAAATAAACATGATATTACA+AGG 0.589674 tig0010977:+58152 None:intergenic
CATTACAAAACCTCTTCCAT+AGG 0.590212 tig0010977:+59453 None:intergenic
GAAGCAAATAAGAAGAATCC+CGG 0.590499 tig0010977:+60801 None:intergenic
CAAACACCAACACCGTCGGT+TGG 0.593373 tig0010977:+60769 None:intergenic
GAAAACTGCTCTTAGTGGAA+GGG 0.593757 tig0010977:-58362 Msa1349740:three_prime_UTR
TGCTGGTGTTGGTATAGGAA+TGG 0.595051 tig0010977:+61851 None:intergenic
CACATGGTCCCTATTTGAGA+AGG 0.599548 tig0010977:-59419 Msa1349740:CDS
CCTATTTGAGAAGGAAGACA+TGG 0.604555 tig0010977:-59410 Msa1349740:CDS
TTCCAAAAGCCTCCAACCGA+CGG 0.616758 tig0010977:-60781 Msa1349740:CDS
AAATCACTGAATTTGGACAT+CGG 0.616978 tig0010977:+60652 None:intergenic
TTTGCAGACTAGGATTGCAA+TGG 0.618762 tig0010977:-58767 Msa1349740:intron
ATTGGCTGTACCTACACCAA+GGG 0.639295 tig0010977:-58629 Msa1349740:CDS
CGCTGAGAATTGTTGCTAGG+GGG 0.642798 tig0010977:-60330 Msa1349740:CDS
GAAACAAACACCAACACCGT+CGG 0.650322 tig0010977:+60765 None:intergenic
TAACAACTCACACAAGCATG+AGG 0.654342 tig0010977:+58739 None:intergenic
GCCGCAAGCATGTAGTAAGT+AGG 0.655110 tig0010977:+60622 None:intergenic
ACCTACTTACTACATGCTTG+CGG 0.656483 tig0010977:-60623 Msa1349740:CDS
GCGCTGAGAATTGTTGCTAG+GGG 0.663147 tig0010977:-60331 Msa1349740:CDS
GGTGGTCATGATGATCATGA+AGG 0.663679 tig0010977:-62002 Msa1349740:CDS
GATGTTGAGAATGTTGCTCA+TGG 0.673579 tig0010977:-62029 Msa1349740:CDS
AATGCCACTAAAGTGACTTG+TGG 0.678107 tig0010977:-58180 Msa1349740:three_prime_UTR
GTGGTCATGATGATCATGAA+GGG 0.680503 tig0010977:-62001 Msa1349740:CDS
GTGGAGAGCGAATATAAACA+AGG 0.681249 tig0010977:+61065 None:intergenic
AATTGGCTGTACCTACACCA+AGG 0.681948 tig0010977:-58630 Msa1349740:CDS
ACTAATGCGATGATAACCAA+AGG 0.685584 tig0010977:+60535 None:intergenic
AACATTCCTCATAACCTCTG+TGG 0.686877 tig0010977:+60495 None:intergenic
TAATGGCATCACAAGACACA+TGG 0.695244 tig0010977:-59435 Msa1349740:CDS
GAGTTTGGCTTGGACCACAG+AGG 0.698961 tig0010977:-60509 Msa1349740:CDS
AATGCGATGATAACCAAAGG+CGG 0.700321 tig0010977:+60538 None:intergenic
TTGGCTGTACCTACACCAAG+GGG 0.705525 tig0010977:-58628 Msa1349740:CDS
GAAGAATGTGAGTAAAGACA+GGG 0.705854 tig0010977:+59264 None:intergenic
AGCCACTACAAACTCCTGTG+AGG 0.724232 tig0010977:+59347 None:intergenic
AATGTTGCTCATGGTCATGG+TGG 0.726262 tig0010977:-62020 Msa1349740:CDS
ATTGGAATGAAATAAATGTG+GGG 0.733464 tig0010977:-58221 Msa1349740:three_prime_UTR
GAATGTGAGTAAAGACAGGG+TGG 0.767321 tig0010977:+59267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTAATTTTATCAAAAT+GGG - tig0010977:58159-58178 Msa1349740:three_prime_UTR 10.0%
!!! AAATCAAAATTTTACATAAA+TGG + tig0010977:58191-58210 None:intergenic 10.0%
!!! AAATTTACATTTTTGTTAAA+GGG - tig0010977:58895-58914 Msa1349740:intron 10.0%
!!! AAATTTACTTTTTTTAGTAA+AGG - tig0010977:59036-59055 Msa1349740:intron 10.0%
!!! ACATTTTTAGTTTTTATTTT+TGG - tig0010977:59106-59125 Msa1349740:intron 10.0%
!!! ACTAAATTTATTTTTTAATG+TGG - tig0010977:59250-59269 Msa1349740:CDS 10.0%
!! ATAGATATAGTTATATTATA+TGG + tig0010977:60244-60263 None:intergenic 10.0%
!! TTAAAAGATATGAAAAAAAT+TGG + tig0010977:61200-61219 None:intergenic 10.0%
!!! ATTTTTTTCATATCTTTTAA+TGG - tig0010977:61200-61219 Msa1349740:intron 10.0%
!!! AAATTTATTTTAAAAATCCA+AGG + tig0010977:61356-61375 None:intergenic 10.0%
!! TACAAATTGTTTAAAAAATT+AGG + tig0010977:61389-61408 None:intergenic 10.0%
!!! TTTTTTAAACAATTTGTATT+TGG - tig0010977:61391-61410 Msa1349740:intron 10.0%
!!! TTTTTAAACAATTTGTATTT+GGG - tig0010977:61392-61411 Msa1349740:intron 10.0%
!!! ATTTTATATAAATTAGAGTT+AGG + tig0010977:61435-61454 None:intergenic 10.0%
!!! TTAAGTAAAAAGTTTTATTT+GGG + tig0010977:61466-61485 None:intergenic 10.0%
!!! TTTAAGTAAAAAGTTTTATT+TGG + tig0010977:61467-61486 None:intergenic 10.0%
!!! TTTTGCTAATATTTTTTTTT+TGG - tig0010977:61961-61980 Msa1349740:CDS 10.0%
!! ATTAAAAGACTAATTAAATT+AGG + tig0010977:62365-62384 None:intergenic 10.0%
!!! TAACCTTAAATTTTTTCAAA+TGG - tig0010977:58080-58099 Msa1349740:three_prime_UTR 15.0%
!!! AACCTTAAATTTTTTCAAAT+GGG - tig0010977:58081-58100 Msa1349740:three_prime_UTR 15.0%
!!! CTTCTTTAATTTTATCAAAA+TGG - tig0010977:58158-58177 Msa1349740:three_prime_UTR 15.0%
!!! GAAATTTACATTTTTGTTAA+AGG - tig0010977:58894-58913 Msa1349740:intron 15.0%
!!! ACAAAGATTGTAATTTTTTA+AGG - tig0010977:59207-59226 Msa1349740:intron 15.0%
!!! CAAAGATTGTAATTTTTTAA+GGG - tig0010977:59208-59227 Msa1349740:intron 15.0%
!! ATAAAATGAACCATAAAAAT+TGG + tig0010977:59551-59570 None:intergenic 15.0%
!!! GACTATTATAATTAATTTTC+TGG - tig0010977:60268-60287 Msa1349740:CDS 15.0%
!! AGATTTATATAAATAAGTCA+GGG + tig0010977:61254-61273 None:intergenic 15.0%
!! AAGATTTATATAAATAAGTC+AGG + tig0010977:61255-61274 None:intergenic 15.0%
!! TTATTATAAAGTCTTTAAGT+AGG - tig0010977:61518-61537 Msa1349740:intron 15.0%
!!! GTCGTTAATTTAATTTTTTT+TGG + tig0010977:61846-61865 None:intergenic 15.0%
!! TAAATAAACATGATATTACA+AGG + tig0010977:62255-62274 None:intergenic 15.0%
!!! TTTTTTGTACATATACTTTT+AGG - tig0010977:62276-62295 Msa1349740:intron 15.0%
!! TTAACATAAAATAAAACTCA+TGG + tig0010977:62401-62420 None:intergenic 15.0%
!!! TTTGTTTGTTTGTTTTTGTT+AGG - tig0010977:58230-58249 Msa1349740:three_prime_UTR 20.0%
!!! TTTTTTGTTAATGTGTTAAG+AGG - tig0010977:58808-58827 Msa1349740:intron 20.0%
!!! TAGTTTTTATTTTTGGTAAG+TGG - tig0010977:59113-59132 Msa1349740:intron 20.0%
!! TAAATTTACATGTGTTCATT+TGG - tig0010977:59184-59203 Msa1349740:intron 20.0%
!!! TTATGGTTCATTTTATACTT+TGG - tig0010977:59555-59574 Msa1349740:intron 20.0%
!!! ATTTTAGAGTAAAAAAGTGA+AGG + tig0010977:60415-60434 None:intergenic 20.0%
!!! TGGATTTATTTTTTTCAAGT+CGG + tig0010977:60479-60498 None:intergenic 20.0%
!! ACTTGAAAAAAATAAATCCA+TGG - tig0010977:60479-60498 Msa1349740:CDS 20.0%
!!! GATGAATTCAAATTTAAGTT+AGG + tig0010977:60917-60936 None:intergenic 20.0%
!! AAAAAAATTGGTCAAATAAG+GGG + tig0010977:61188-61207 None:intergenic 20.0%
!! GAAAAAAATTGGTCAAATAA+GGG + tig0010977:61189-61208 None:intergenic 20.0%
!! TGAAAAAAATTGGTCAAATA+AGG + tig0010977:61190-61209 None:intergenic 20.0%
!! GTGAACTAATAATAAAAATC+TGG + tig0010977:61568-61587 None:intergenic 20.0%
!! TATTGGAATGAAATAAATGT+GGG - tig0010977:62182-62201 Msa1349740:intron 20.0%
!!! TCCATCATTATTTTATTGTT+AGG - tig0010977:62318-62337 Msa1349740:exon 20.0%
!! ACCTAACAATAAAATAATGA+TGG + tig0010977:62322-62341 None:intergenic 20.0%
! CACCCATTTGAAAAAATTTA+AGG + tig0010977:58086-58105 None:intergenic 25.0%
! GAAATTAATTACATGTTCAG+TGG + tig0010977:58109-58128 None:intergenic 25.0%
! AAGAAAAAGAAACATACTTG+TGG + tig0010977:58624-58643 None:intergenic 25.0%
!!! AAAGTATTGACATGAACAAT+GGG + tig0010977:58764-58783 None:intergenic 25.0%
!!! TAAAGTATTGACATGAACAA+TGG + tig0010977:58765-58784 None:intergenic 25.0%
!!! TGTAGTTGTTTTCTTTGTAA+TGG - tig0010977:58968-58987 Msa1349740:intron 25.0%
!!! GTAGTTGTTTTCTTTGTAAT+GGG - tig0010977:58969-58988 Msa1349740:intron 25.0%
! TTGTTGAATTCAAATACTTG+AGG - tig0010977:59073-59092 Msa1349740:intron 25.0%
!!! GCATAATTCTTGCTTTTTTT+TGG - tig0010977:59504-59523 Msa1349740:intron 25.0%
!! TAGAAAATGGCCAATTTTTA+TGG - tig0010977:59538-59557 Msa1349740:intron 25.0%
! GAGGAATGTTGTTAATATAA+CGG - tig0010977:59922-59941 Msa1349740:intron 25.0%
! TTGTTAATATAACGGTTAGT+AGG - tig0010977:59930-59949 Msa1349740:intron 25.0%
! TGTTAATATAACGGTTAGTA+GGG - tig0010977:59931-59950 Msa1349740:intron 25.0%
!! ATGCAATCAATTTTCAGAAA+TGG - tig0010977:60160-60179 Msa1349740:intron 25.0%
! ATGAACAGTTGATTAGTATT+TGG - tig0010977:60217-60236 Msa1349740:intron 25.0%
!! ATCACAGTAAAATGTGATTT+TGG + tig0010977:60509-60528 None:intergenic 25.0%
!! CACATAGTTCTTTTTCTTAT+TGG + tig0010977:60694-60713 None:intergenic 25.0%
! CAATAAGAAAAAGAACTATG+TGG - tig0010977:60692-60711 Msa1349740:CDS 25.0%
! ATGACAACAAATTTGAAAGA+CGG + tig0010977:60835-60854 None:intergenic 25.0%
! GTTAGGTAACTTCAAATAAT+TGG + tig0010977:60900-60919 None:intergenic 25.0%
! CGGTTAAAAAAAATTAGTTC+GGG + tig0010977:61330-61349 None:intergenic 25.0%
! GCGGTTAAAAAAAATTAGTT+CGG + tig0010977:61331-61350 None:intergenic 25.0%
! ATAAAGTCTTTAAGTAGGTA+AGG - tig0010977:61523-61542 Msa1349740:intron 25.0%
! TAAAGTCTTTAAGTAGGTAA+GGG - tig0010977:61524-61543 Msa1349740:intron 25.0%
!! ATCTGGTTTAATTACAATGT+AGG + tig0010977:61551-61570 None:intergenic 25.0%
!! TTATCAAACAATCTGTTTTC+TGG + tig0010977:61713-61732 None:intergenic 25.0%
! TAAAACAATTAAAGATCGTC+AGG - tig0010977:61730-61749 Msa1349740:intron 25.0%
! TAATTTCGTCATTTAATCCA+GGG - tig0010977:61901-61920 Msa1349740:CDS 25.0%
! ACTAAGTAAATTCAAGATGA+AGG - tig0010977:62005-62024 Msa1349740:CDS 25.0%
!! ATTCAAGTATTCAACTCTTT+TGG + tig0010977:62077-62096 None:intergenic 25.0%
! GCCAATAAAAAAAATCTTGA+TGG - tig0010977:62101-62120 Msa1349740:CDS 25.0%
!!! GCCATCAAGATTTTTTTTAT+TGG + tig0010977:62105-62124 None:intergenic 25.0%
! GTATTGGAATGAAATAAATG+TGG - tig0010977:62181-62200 Msa1349740:intron 25.0%
! ATTGGAATGAAATAAATGTG+GGG - tig0010977:62183-62202 Msa1349740:intron 25.0%
! TAAACATGATATTACAAGGA+TGG + tig0010977:62251-62270 None:intergenic 25.0%
!!! TACTTTTAGGATATTCCATA+TGG - tig0010977:62289-62308 Msa1349740:intron 25.0%
ATTGATAAAGATGACGTTAC+TGG + tig0010977:58008-58027 None:intergenic 30.0%
!!! GTTTGTTTGTTTTTGTTAGG+TGG - tig0010977:58233-58252 Msa1349740:three_prime_UTR 30.0%
! ATGAAGGGTATAATGTTTCA+AGG - tig0010977:58418-58437 Msa1349740:three_prime_UTR 30.0%
TATTCATCACAATCCTCAAA+GGG + tig0010977:58467-58486 None:intergenic 30.0%
AAAAAGAAACATACTTGTGG+TGG + tig0010977:58621-58640 None:intergenic 30.0%
!!! GTTGTTCATGTCAGTTTTTT+TGG - tig0010977:58683-58702 Msa1349740:CDS 30.0%
AGCTCAATTGAATTGAAGTA+AGG + tig0010977:58735-58754 None:intergenic 30.0%
! TTTTTGTTAAAGGGTTATGC+AGG - tig0010977:58904-58923 Msa1349740:intron 30.0%
!! TTTCTTTGTAATGGGTAATG+AGG - tig0010977:58977-58996 Msa1349740:intron 30.0%
!! TTCTTTGTAATGGGTAATGA+GGG - tig0010977:58978-58997 Msa1349740:intron 30.0%
!!! ATTCTTGCTTTTTTTTGGCA+AGG - tig0010977:59509-59528 Msa1349740:intron 30.0%
AAATCACTGAATTTGGACAT+CGG + tig0010977:59755-59774 None:intergenic 30.0%
TCGATTCAAATCACTGAATT+TGG + tig0010977:59762-59781 None:intergenic 30.0%
GATTCTTGTGGATAACTATA+TGG - tig0010977:59807-59826 Msa1349740:intron 30.0%
! TTTTCAGAAATGGCAATAGT+TGG - tig0010977:60170-60189 Msa1349740:intron 30.0%
TTTCAGAAATGGCAATAGTT+GGG - tig0010977:60171-60190 Msa1349740:intron 30.0%
! CATCAAACTCTTTTCTGTTT+CGG - tig0010977:60769-60788 Msa1349740:CDS 30.0%
TTTCGGATTATATGATCTGT+TGG - tig0010977:60786-60805 Msa1349740:CDS 30.0%
TGTTGGATTCCTTTATTACA+CGG - tig0010977:60803-60822 Msa1349740:CDS 30.0%
AACAAATTTGAAAGACGGTA+GGG + tig0010977:60830-60849 None:intergenic 30.0%
! TATGTGATAATGTGCAACAA+GGG + tig0010977:60863-60882 None:intergenic 30.0%
GTTATATCAGCATCTACTAT+TGG + tig0010977:61022-61041 None:intergenic 30.0%
TCTTTACTCACATTCTTCAT+TGG - tig0010977:61145-61164 Msa1349740:intron 30.0%
! ATTCTTCATTGGATACCTTT+TGG - tig0010977:61156-61175 Msa1349740:intron 30.0%
! TCTACTATGCTATGCTATTT+AGG - tig0010977:61227-61246 Msa1349740:intron 30.0%
!! ATTTTAAAAATCCAAGGACG+CGG + tig0010977:61350-61369 None:intergenic 30.0%
!! ATTTGGGTTTCTAAAGTTCA+AGG - tig0010977:61408-61427 Msa1349740:intron 30.0%
GACTTAGAAGATATACTTCA+AGG - tig0010977:61798-61817 Msa1349740:intron 30.0%
CTAATTTCGTCATTTAATCC+AGG - tig0010977:61900-61919 Msa1349740:CDS 30.0%
! AAAAAAAATCTTGATGGCTG+AGG - tig0010977:62107-62126 Msa1349740:CDS 30.0%
CCAATACAAAATTCCAATGA+TGG + tig0010977:62168-62187 None:intergenic 30.0%
! CCATCATTGGAATTTTGTAT+TGG - tig0010977:62165-62184 Msa1349740:intron 30.0%
!!! TTTTAGGATATTCCATATGG+TGG - tig0010977:62292-62311 Msa1349740:intron 30.0%
!! AAAGATGGATGATGGAAAGA+AGG - tig0010977:58275-58294 Msa1349740:three_prime_UTR 35.0%
! ATGATGGAAAGAAGGAAGAA+GGG - tig0010977:58283-58302 Msa1349740:three_prime_UTR 35.0%
AAAGAAGGAAGAAGGGTTAA+GGG - tig0010977:58290-58309 Msa1349740:three_prime_UTR 35.0%
! TGATGATGATGATGATGATG+AGG - tig0010977:58347-58366 Msa1349740:three_prime_UTR 35.0%
CTATTCATCACAATCCTCAA+AGG + tig0010977:58468-58487 None:intergenic 35.0%
!!! ATTTTTGGTAAGTGGCTATG+AGG - tig0010977:59121-59140 Msa1349740:intron 35.0%
!! TTTTTGGTAAGTGGCTATGA+GGG - tig0010977:59122-59141 Msa1349740:intron 35.0%
!!! TTCATTTTTTCAGCAGCAAC+CGG - tig0010977:59280-59299 Msa1349740:CDS 35.0%
CTTCTTGAATTAAGTGTCAC+CGG + tig0010977:59302-59321 None:intergenic 35.0%
! TGTGTGTTTTCTTGTGTTCA+AGG - tig0010977:59382-59401 Msa1349740:CDS 35.0%
! GTGTGTTTTCTTGTGTTCAA+GGG - tig0010977:59383-59402 Msa1349740:CDS 35.0%
!! AAGAATCTGGTTCTGTTAAG+AGG - tig0010977:59423-59442 Msa1349740:CDS 35.0%
! GATGTATTTTCTTCCACAAG+TGG - tig0010977:59463-59482 Msa1349740:CDS 35.0%
GAAGCAAATAAGAAGAATCC+CGG + tig0010977:59606-59625 None:intergenic 35.0%
!! TGTTTCATTGCTTTTGCGAT+TGG - tig0010977:59656-59675 Msa1349740:intron 35.0%
ATATGGACTTTAGCAGTAGT+TGG - tig0010977:59824-59843 Msa1349740:intron 35.0%
!!! GAACTTTTATTTTCCGCCTT+TGG - tig0010977:59853-59872 Msa1349740:intron 35.0%
ACTAATGCGATGATAACCAA+AGG + tig0010977:59872-59891 None:intergenic 35.0%
!! AATCTTGGAAGTGCTTGTTT+GGG - tig0010977:60025-60044 Msa1349740:intron 35.0%
GGTATATGAGTGCAAATTGT+TGG - tig0010977:60289-60308 Msa1349740:CDS 35.0%
! AATGTGATTTTGGATGACCA+TGG + tig0010977:60499-60518 None:intergenic 35.0%
AACCATTAGCTGTAACAATG+CGG + tig0010977:60574-60593 None:intergenic 35.0%
CATTGTTACAGCTAATGGTT+TGG - tig0010977:60574-60593 Msa1349740:CDS 35.0%
! GGCTATGAGTACATTTGTTA+TGG - tig0010977:60595-60614 Msa1349740:CDS 35.0%
TCAAATAAACACGCGAATGA+GGG + tig0010977:60652-60671 None:intergenic 35.0%
TTGAGTATGTGTTGAACACT+CGG - tig0010977:60668-60687 Msa1349740:CDS 35.0%
CTATGTGGCTTAGATTTGAT+TGG - tig0010977:60707-60726 Msa1349740:CDS 35.0%
CAACAAATTTGAAAGACGGT+AGG + tig0010977:60831-60850 None:intergenic 35.0%
! CTATGTGATAATGTGCAACA+AGG + tig0010977:60864-60883 None:intergenic 35.0%
CATTACAAAACCTCTTCCAT+AGG + tig0010977:60954-60973 None:intergenic 35.0%
!! CTATGGAAGAGGTTTTGTAA+TGG - tig0010977:60952-60971 Msa1349740:CDS 35.0%
CATGTCTTCCTTCTCAAATA+GGG + tig0010977:60996-61015 None:intergenic 35.0%
GAAGAATGTGAGTAAAGACA+GGG + tig0010977:61143-61162 None:intergenic 35.0%
TGAAGAATGTGAGTAAAGAC+AGG + tig0010977:61144-61163 None:intergenic 35.0%
! TTCATTGGATACCTTTTGGT+TGG - tig0010977:61160-61179 Msa1349740:intron 35.0%
!!! ATTTTTTTTAACCGCGTCCT+TGG - tig0010977:61336-61355 Msa1349740:intron 35.0%
!!! ACTTGTTGATTTTGCAGACT+AGG - tig0010977:61627-61646 Msa1349740:intron 35.0%
TAATCCAGGGAATTAGAGAT+AGG - tig0010977:61914-61933 Msa1349740:CDS 35.0%
AAAACCTATCTCTAATTCCC+TGG + tig0010977:61921-61940 None:intergenic 35.0%
GATATGAAAACTGCTCTTAG+TGG - tig0010977:62037-62056 Msa1349740:CDS 35.0%
!!! TGGTTTTGTTGAGAATGATC+TGG - tig0010977:62133-62152 Msa1349740:CDS 35.0%
TATTGTTAGGTATGCGTAGA+AGG - tig0010977:62331-62350 Msa1349740:five_prime_UTR 35.0%
TGTTAGGTGGATGAAAGTGA+AGG - tig0010977:58246-58265 Msa1349740:three_prime_UTR 40.0%
AAGTGAAGGAGCTAGAAAGA+TGG - tig0010977:58260-58279 Msa1349740:three_prime_UTR 40.0%
!! GATGATGGAAAGAAGGAAGA+AGG - tig0010977:58282-58301 Msa1349740:three_prime_UTR 40.0%
GAAAGAAGGAAGAAGGGTTA+AGG - tig0010977:58289-58308 Msa1349740:three_prime_UTR 40.0%
GATTTGGAGAAAGGTGAAGT+TGG - tig0010977:58312-58331 Msa1349740:three_prime_UTR 40.0%
GATGTTGAGAATGTTGCTCA+TGG - tig0010977:58375-58394 Msa1349740:three_prime_UTR 40.0%
GTGGTCATGATGATCATGAA+GGG - tig0010977:58403-58422 Msa1349740:three_prime_UTR 40.0%
TAAACCCTACTAACCCTTTG+AGG - tig0010977:58451-58470 Msa1349740:three_prime_UTR 40.0%
! CAATCCTCAAAGGGTTAGTA+GGG + tig0010977:58458-58477 None:intergenic 40.0%
! ACAATCCTCAAAGGGTTAGT+AGG + tig0010977:58459-58478 None:intergenic 40.0%
!! TGAGAGCGTTGAGATTTCTT+AGG + tig0010977:58519-58538 None:intergenic 40.0%
GTGGAGAGCGAATATAAACA+AGG + tig0010977:59342-59361 None:intergenic 40.0%
CAAGAGCGATAGCTAGTAAT+TGG + tig0010977:59364-59383 None:intergenic 40.0%
CAGATTCTTGTACTAGTCCT+TGG + tig0010977:59412-59431 None:intergenic 40.0%
! CAAGGACTAGTACAAGAATC+TGG - tig0010977:59410-59429 Msa1349740:CDS 40.0%
GGCAAGGTGCAATTAGAAAA+TGG - tig0010977:59525-59544 Msa1349740:intron 40.0%
!! ATTGCTTTTGCGATTGGCAA+TGG - tig0010977:59662-59681 Msa1349740:intron 40.0%
ACCTACTTACTACATGCTTG+CGG - tig0010977:59781-59800 Msa1349740:intron 40.0%
AATGCGATGATAACCAAAGG+CGG + tig0010977:59869-59888 None:intergenic 40.0%
! CATCGCATTAGTGTTGAGTT+TGG - tig0010977:59880-59899 Msa1349740:intron 40.0%
! CATTAGTGTTGAGTTTGGCT+TGG - tig0010977:59885-59904 Msa1349740:intron 40.0%
AACATTCCTCATAACCTCTG+TGG + tig0010977:59912-59931 None:intergenic 40.0%
ATCGCGTTGTATTACTTGAG+AGG - tig0010977:59956-59975 Msa1349740:intron 40.0%
!! GAATCTTGGAAGTGCTTGTT+TGG - tig0010977:60024-60043 Msa1349740:intron 40.0%
!! ATCTTGGAAGTGCTTGTTTG+GGG - tig0010977:60026-60045 Msa1349740:intron 40.0%
ATTCTCAGCGCTTCAATTGT+TGG + tig0010977:60064-60083 None:intergenic 40.0%
CAATAGTTGGGCATATGTAC+AGG - tig0010977:60183-60202 Msa1349740:intron 40.0%
ATCCGCATTGTTACAGCTAA+TGG - tig0010977:60569-60588 Msa1349740:CDS 40.0%
CTCAAATAAACACGCGAATG+AGG + tig0010977:60653-60672 None:intergenic 40.0%
TCATAACAGATTGCAGCCTA+TGG - tig0010977:60935-60954 Msa1349740:CDS 40.0%
TAATGGCATCACAAGACACA+TGG - tig0010977:60969-60988 Msa1349740:CDS 40.0%
CCATGTCTTCCTTCTCAAAT+AGG + tig0010977:60997-61016 None:intergenic 40.0%
CCTATTTGAGAAGGAAGACA+TGG - tig0010977:60994-61013 Msa1349740:CDS 40.0%
! GTGTTATTGTTGTAGCTGCT+TGG - tig0010977:61086-61105 Msa1349740:CDS 40.0%
!! AATAAGGGGTACCAACCAAA+AGG + tig0010977:61174-61193 None:intergenic 40.0%
TTTGCAGACTAGGATTGCAA+TGG - tig0010977:61637-61656 Msa1349740:intron 40.0%
TAACAACTCACACAAGCATG+AGG + tig0010977:61668-61687 None:intergenic 40.0%
GTTGAAAACTGGTCGTGAAT+TGG - tig0010977:61757-61776 Msa1349740:intron 40.0%
GTATATCTTCTAAGTCCCCT+TGG + tig0010977:61794-61813 None:intergenic 40.0%
TGAAAACTGCTCTTAGTGGA+AGG - tig0010977:62041-62060 Msa1349740:CDS 40.0%
GAAAACTGCTCTTAGTGGAA+GGG - tig0010977:62042-62061 Msa1349740:CDS 40.0%
AATGCCACTAAAGTGACTTG+TGG - tig0010977:62224-62243 Msa1349740:intron 40.0%
! AATGATGGAACTCCACCATA+TGG + tig0010977:62307-62326 None:intergenic 40.0%
GGAGCTAGAAAGATGGATGA+TGG - tig0010977:58267-58286 Msa1349740:three_prime_UTR 45.0%
GGAAGAAGGGTTAAGGGATT+TGG - tig0010977:58296-58315 Msa1349740:three_prime_UTR 45.0%
GGGTTAAGGGATTTGGAGAA+AGG - tig0010977:58303-58322 Msa1349740:three_prime_UTR 45.0%
GAGAATGTTGCTCATGGTCA+TGG - tig0010977:58381-58400 Msa1349740:three_prime_UTR 45.0%
AATGTTGCTCATGGTCATGG+TGG - tig0010977:58384-58403 Msa1349740:three_prime_UTR 45.0%
GGTGGTCATGATGATCATGA+AGG - tig0010977:58402-58421 Msa1349740:three_prime_UTR 45.0%
TGAGATTTCTTAGGAGGAGG+AGG + tig0010977:58510-58529 None:intergenic 45.0%
CGTTGAGATTTCTTAGGAGG+AGG + tig0010977:58513-58532 None:intergenic 45.0%
!! GAGCGTTGAGATTTCTTAGG+AGG + tig0010977:58516-58535 None:intergenic 45.0%
!! TGCTGGTGTTGGTATAGGAA+TGG + tig0010977:58556-58575 None:intergenic 45.0%
!! ATTGGTGCTGGTGTTGGTAT+AGG + tig0010977:58561-58580 None:intergenic 45.0%
!! GTTTGAATTGGTGCTGGTGT+TGG + tig0010977:58567-58586 None:intergenic 45.0%
TGTGGAGTTTGAATTGGTGC+TGG + tig0010977:58573-58592 None:intergenic 45.0%
GGTGGTTGTGGAGTTTGAAT+TGG + tig0010977:58579-58598 None:intergenic 45.0%
CATACTTGTGGTGGTTGTTG+TGG + tig0010977:58612-58631 None:intergenic 45.0%
GAGCGATAGCTAGTAATTGG+TGG + tig0010977:59361-59380 None:intergenic 45.0%
AAAGTTGCAGCTTCCACTTG+TGG + tig0010977:59479-59498 None:intergenic 45.0%
TTTGTGATGTCTCTTGCAGC+CGG - tig0010977:59584-59603 Msa1349740:intron 45.0%
GAAACAAACACCAACACCGT+CGG + tig0010977:59642-59661 None:intergenic 45.0%
! GCAATGGCTTGTATGGTTGT+TGG - tig0010977:59678-59697 Msa1349740:intron 45.0%
!! AAGCGCTGAGAATTGTTGCT+AGG - tig0010977:60071-60090 Msa1349740:intron 45.0%
! AGCGCTGAGAATTGTTGCTA+GGG - tig0010977:60072-60091 Msa1349740:intron 45.0%
! TTGTTGCGCTCGTTGTTGTT+TGG - tig0010977:60132-60151 Msa1349740:intron 45.0%
!! TGTTGCGCTCGTTGTTGTTT+GGG - tig0010977:60133-60152 Msa1349740:intron 45.0%
ATGAGGGAAATGTGGTGACT+AGG + tig0010977:60636-60655 None:intergenic 45.0%
CACATGGTCCCTATTTGAGA+AGG - tig0010977:60985-61004 Msa1349740:CDS 45.0%
TGTGAGGAAGCAAATTGAGC+TGG + tig0010977:61044-61063 None:intergenic 45.0%
! AGCTCAATTTGCTTCCTCAC+AGG - tig0010977:61043-61062 Msa1349740:CDS 45.0%
TTCCTCACAGGAGTTTGTAG+TGG - tig0010977:61055-61074 Msa1349740:CDS 45.0%
GAATGTGAGTAAAGACAGGG+TGG + tig0010977:61140-61159 None:intergenic 45.0%
!! CGTCAGGCTTTGTTGAAAAC+TGG - tig0010977:61746-61765 Msa1349740:intron 45.0%
AATTGGCTGTACCTACACCA+AGG - tig0010977:61774-61793 Msa1349740:intron 45.0%
ATTGGCTGTACCTACACCAA+GGG - tig0010977:61775-61794 Msa1349740:intron 45.0%
! AATCTTGATGGCTGAGGAAG+TGG - tig0010977:62113-62132 Msa1349740:CDS 45.0%
! TGGACCACAAGTCACTTTAG+TGG + tig0010977:62231-62250 None:intergenic 45.0%
!!! TTTAAAATAAATTTATAATC+AGG - tig0010977:61362-61381 Msa1349740:intron 5.0%
!!! CTAATTTATATAAAATTTTA+TGG - tig0010977:61439-61458 Msa1349740:intron 5.0%
ACTTGTGGTGGTTGTTGTGG+TGG + tig0010977:58609-58628 None:intergenic 50.0%
CTTGTGTTCAAGGGAGTCCA+AGG - tig0010977:59392-59411 Msa1349740:CDS 50.0%
TTGTGATGTCTCTTGCAGCC+GGG - tig0010977:59585-59604 Msa1349740:intron 50.0%
TTCCAAAAGCCTCCAACCGA+CGG - tig0010977:59623-59642 Msa1349740:intron 50.0%
! GCGATTGGCAATGGCTTGTA+TGG - tig0010977:59671-59690 Msa1349740:intron 50.0%
GCCGCAAGCATGTAGTAAGT+AGG + tig0010977:59785-59804 None:intergenic 50.0%
ACTTACTACATGCTTGCGGC+TGG - tig0010977:59785-59804 Msa1349740:intron 50.0%
CTTGGACCACAGAGGTTATG+AGG - tig0010977:59903-59922 Msa1349740:intron 50.0%
!! GCTTTCTGAGAGCGTTGACT+CGG - tig0010977:60002-60021 Msa1349740:intron 50.0%
!! AGAGCGTTGACTCGGAATCT+TGG - tig0010977:60010-60029 Msa1349740:intron 50.0%
GCGCTGAGAATTGTTGCTAG+GGG - tig0010977:60073-60092 Msa1349740:intron 50.0%
CGCTGAGAATTGTTGCTAGG+GGG - tig0010977:60074-60093 Msa1349740:intron 50.0%
! TAGGGGGCTGAATTTGCTTG+AGG - tig0010977:60090-60109 Msa1349740:intron 50.0%
! AGGGGGCTGAATTTGCTTGA+GGG - tig0010977:60091-60110 Msa1349740:intron 50.0%
! TGGTGACTAGGTTCGATTCG+AGG + tig0010977:60624-60643 None:intergenic 50.0%
ACACGCGAATGAGGGAAATG+TGG + tig0010977:60644-60663 None:intergenic 50.0%
CGGTAGGGTCCGTGTAATAA+AGG + tig0010977:60815-60834 None:intergenic 50.0%
CAGATTGCAGCCTATGGAAG+AGG - tig0010977:60941-60960 Msa1349740:CDS 50.0%
AGCCACTACAAACTCCTGTG+AGG + tig0010977:61060-61079 None:intergenic 50.0%
TTGGCTGTACCTACACCAAG+GGG - tig0010977:61776-61795 Msa1349740:intron 50.0%
! CTTCTAAGTCCCCTTGGTGT+AGG + tig0010977:61788-61807 None:intergenic 50.0%
! CTGGCTTGAAGAGCCATCAT+TGG - tig0010977:62152-62171 Msa1349740:CDS 50.0%
TGTGGTGGTTGTTGTGGTGG+TGG + tig0010977:58606-58625 None:intergenic 55.0%
CAAACACCAACACCGTCGGT+TGG + tig0010977:59638-59657 None:intergenic 55.0%
TGCTTGCGGCTGGATTCTTG+TGG - tig0010977:59795-59814 Msa1349740:intron 55.0%
!! GAGTTTGGCTTGGACCACAG+AGG - tig0010977:59895-59914 Msa1349740:intron 55.0%
!! TGTTGTGGTGGTGGTGGTGG+TGG + tig0010977:58597-58616 None:intergenic 60.0%
!! GGTTGTTGTGGTGGTGGTGG+TGG + tig0010977:58600-58619 None:intergenic 60.0%
!! GGTGGTTGTTGTGGTGGTGG+TGG + tig0010977:58603-58622 None:intergenic 60.0%
!! CACCGTCGGTTGGAGGCTTT+TGG + tig0010977:59628-59647 None:intergenic 60.0%
AAGCCTCCAACCGACGGTGT+TGG - tig0010977:59629-59648 Msa1349740:intron 60.0%
! ACACCAACACCGTCGGTTGG+AGG + tig0010977:59635-59654 None:intergenic 60.0%
!! GGTGGTGGTGGTGGTGGTTG+TGG + tig0010977:58591-58610 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0010977 gene 57989 62437 57989 ID=Msa1349740;Name=Msa1349740
tig0010977 mRNA 57989 62437 57989 ID=Msa1349740-mRNA-1;Parent=Msa1349740;Name=Msa1349740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=110|1|1|1|1|1|5|611|573
tig0010977 exon 57989 58782 57989 ID=Msa1349740-mRNA-1:exon:7097;Parent=Msa1349740-mRNA-1
tig0010977 exon 59249 59482 59249 ID=Msa1349740-mRNA-1:exon:7096;Parent=Msa1349740-mRNA-1
tig0010977 exon 60222 61133 60222 ID=Msa1349740-mRNA-1:exon:7095;Parent=Msa1349740-mRNA-1
tig0010977 exon 61800 62174 61800 ID=Msa1349740-mRNA-1:exon:7094;Parent=Msa1349740-mRNA-1
tig0010977 exon 62310 62437 62310 ID=Msa1349740-mRNA-1:exon:7093;Parent=Msa1349740-mRNA-1
tig0010977 five_prime_UTR 62328 62437 62328 ID=Msa1349740-mRNA-1:five_prime_utr;Parent=Msa1349740-mRNA-1
tig0010977 CDS 62310 62327 62310 ID=Msa1349740-mRNA-1:cds;Parent=Msa1349740-mRNA-1
tig0010977 CDS 61800 62174 61800 ID=Msa1349740-mRNA-1:cds;Parent=Msa1349740-mRNA-1
tig0010977 CDS 60222 61133 60222 ID=Msa1349740-mRNA-1:cds;Parent=Msa1349740-mRNA-1
tig0010977 CDS 59249 59482 59249 ID=Msa1349740-mRNA-1:cds;Parent=Msa1349740-mRNA-1
tig0010977 CDS 58600 58782 58600 ID=Msa1349740-mRNA-1:cds;Parent=Msa1349740-mRNA-1
tig0010977 three_prime_UTR 57989 58599 57989 ID=Msa1349740-mRNA-1:three_prime_utr;Parent=Msa1349740-mRNA-1
Gene Sequence

>Msa1349740

ATGGGTGCCACTGAACATGTGGATGAAAGTGAAGGAGCTAGAAAGATGGATGATGGAAAGAAGGAAGAAGGGTTAAGGGATTTGGAGAAAGGTGAAGTTGGAAAGAATGATGTTGATGATGATGATGATGATGATGATGAGGATGTTGAGAATGTTGCTCATGGTCATGGTGGTCATGATGATCATGAAGGGTATAATGTTTCAAGGTTTCATAGATTAAACCCTACTAACCCTTTGAGGATTGTGATGAATAGCAATACAAGAGTTGCAAAACCTCCTCCTCCTAAGAAATCTCAACGCTCTCATACTCATACACGTTCCATTCCTATACCAACACCAGCACCAATTCAAACTCCACAACCACCACCACCACCACCACAACAACCACCACAACAGCAACCGGTGACACTTAATTCAAGAAGATATACTAACAAAATATCCTTGTTTATATTCGCTCTCCACCAATTACTAGCTATCGCTCTTGTGTGTTTTCTTGTGTTCAAGGGAGTCCAAGGACTAGTACAAGAATCTGGTTCTGTTAAGAGGAAAGAAAAAAGAGTGTTGATGTATTTTCTTCCACAAGTGGAAGCTGCAACTTTTATGAGCATAATTCTTGCTTTTTTTTGGCAAGGTGCAATTAGAAAATGGCCAATTTTTATGGTTCATTTTATACTTTGGTTTACTTTTGTGATGTCTCTTGCAGCCGGGATTCTTCTTATTTGCTTCCAAAAGCCTCCAACCGACGGTGTTGGTGTTTGTTTCATTGCTTTTGCGATTGGCAATGGCTTGTATGGTTGTTGGATTAGTCATAGAATTAAGTTTTGTTGTAAGATATTGACTTTATCACTTCAACCGATGTCCAAATTCAGTGATTTGAATCGACCTACTTACTACATGCTTGCGGCTGGATTCTTGTGGATAACTATATGGACTTTAGCAGTAGTTGGAGCTTTGAACTTTTATTTTCCGCCTTTGGTTATCATCGCATTAGTGTTGAGTTTGGCTTGGACCACAGAGGTTATGAGGAATGTTGTTAATATAACGGTTAGTAGGGTTATCGCGTTGTATTACTTGAGAGGAATGCAATCTAGCACACAATTTTGCTTTCTGAGAGCGTTGACTCGGAATCTTGGAAGTGCTTGTTTGGGGTCTCTATTTGTTCCAACAATTGAAGCGCTGAGAATTGTTGCTAGGGGGCTGAATTTGCTTGAGGGCGAAGATGAGTTCATGTTTTGTTGCGCTCGTTGTTGTTTGGGAGTCATGCAATCAATTTTCAGAAATGGCAATAGTTGGGCATATGTACAGATTGCAGCCTATGGAAGAGGTTTTGTAATGGCATCACAAGACACATGGTCCCTATTTGAGAAGGAAGACATGGTGCCAATAGTAGATGCTGATATAACCAGCTCAATTTGCTTCCTCACAGGAGTTTGTAGTGGCTCTATGTGTGTTATTGTTGTAGCTGCTTGGACTCACACTGTACACAGAAGTTTCACAGCCACCCTGTCTTTACTCACATTCTTCATTGGATACCTTTTGACTAGGATTGCAATGGCAGTGCCTCATGCTTGTGTGAGTTGTTATTATGTATGCTATGCTGAAAATCCAGAAAACAGATTGTTTGATAAAACAATTAAAGATCGTCAGGCTTTGTTGAAAACTGGTCGTGAATTGGCTGTACCTACACCAAGGGGACTTAGAAGATATACTTCAAGGTCTTAA
Protein sequence

>Msa1349740

MGATEHVDESEGARKMDDGKKEEGLRDLEKGEVGKNDVDDDDDDDDEDVENVAHGHGGHDDHEGYNVSRFHRLNPTNPLRIVMNSNTRVAKPPPPKKSQRSHTHTRSIPIPTPAPIQTPQPPPPPPQQPPQQQPVTLNSRRYTNKISLFIFALHQLLAIALVCFLVFKGVQGLVQESGSVKRKEKRVLMYFLPQVEAATFMSIILAFFWQGAIRKWPIFMVHFILWFTFVMSLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYGCWISHRIKFCCKILTLSLQPMSKFSDLNRPTYYMLAAGFLWITIWTLAVVGALNFYFPPLVIIALVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFCFLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFCCARCCLGVMQSIFRNGNSWAYVQIAAYGRGFVMASQDTWSLFEKEDMVPIVDADITSSICFLTGVCSGSMCVIVVAAWTHTVHRSFTATLSLLTFFIGYLLTRIAMAVPHACVSCYYVCYAENPENRLFDKTIKDRQALLKTGRELAVPTPRGLRRYTSRS*