AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721970 MtrunA17_Chr5g0413371 91.876 517 38 1 17 533 1 513 0.0 972
Msa0721970 MtrunA17_Chr5g0446171 53.271 214 71 5 1 187 1 212 1.97e-50 173
Msa0721970 MtrunA17_Chr5g0446231 57.368 190 65 4 22 195 1 190 1.56e-48 176
Msa0721970 MtrunA17_Chr5g0446191 56.989 186 64 4 26 195 20 205 2.88e-46 170
Msa0721970 MtrunA17_Chr5g0445771 42.262 168 74 2 4 148 2 169 3.50e-26 112
Msa0721970 MtrunA17_Chr1g0190521 31.628 215 131 6 341 542 121 332 1.15e-19 93.2
Msa0721970 MtrunA17_Chr5g0445861 36.232 207 91 7 1 174 1 199 1.98e-19 90.9
Msa0721970 MtrunA17_Chr1g0193171 27.562 283 170 7 261 535 60 315 2.35e-18 89.0
Msa0721970 MtrunA17_Chr5g0445881 37.234 188 79 5 1 150 1 187 5.38e-18 87.0
Msa0721970 MtrunA17_Chr5g0445831 42.636 129 70 3 1 126 1 128 5.09e-17 83.6
Msa0721970 MtrunA17_Chr7g0275141 28.788 132 91 2 404 533 20 150 5.18e-17 84.3
Msa0721970 MtrunA17_Chr5g0446181 41.667 156 56 5 1 132 1 145 1.77e-16 81.3
Msa0721970 MtrunA17_Chr4g0049281 33.077 130 84 2 406 533 8 136 1.76e-15 79.3
Msa0721970 MtrunA17_Chr1g0190511 30.049 203 127 5 353 542 27 227 1.80e-15 79.7
Msa0721970 MtrunA17_Chr5g0445961 32.663 199 94 4 1 159 1 199 1.34e-14 76.6
Msa0721970 MtrunA17_Chr4g0069321 33.871 124 79 2 410 531 190 312 8.24e-14 74.3
Msa0721970 MtrunA17_Chr8g0338961 31.724 145 95 3 391 533 257 399 1.94e-13 72.8
Msa0721970 MtrunA17_Chr6g0462901 27.692 130 92 2 403 531 405 533 3.09e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721970 AT3G05850.1 35.938 128 79 2 406 531 206 332 4.50e-16 82.0
Msa0721970 AT1G06740.1 27.895 190 122 5 360 542 113 294 8.03e-15 78.2

Find 103 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGACCCAGGTTCGGTTTC+GGG 0.153720 5_1:-19119758 None:intergenic
CAATGTTTAGTGGTTTATTT+TGG 0.196890 5_1:+19124902 Msa0721970:three_prime_UTR
CACTGCGTAATGCAAAATTT+AGG 0.219611 5_1:-19119624 None:intergenic
ATACCCGCATAACTCATATT+TGG 0.224107 5_1:-19124568 None:intergenic
TCCTGATCGGTACTCCTATT+TGG 0.236061 5_1:+19123763 Msa0721970:CDS
AAACATGAGCATTCAAGATT+TGG 0.255671 5_1:+19119805 Msa0721970:CDS
TTTCCTTTGATACCTCTATT+AGG 0.262376 5_1:-19124217 None:intergenic
GAAGTTAAGAAAACTAGTTT+AGG 0.304656 5_1:+19120025 Msa0721970:CDS
ACGAGACCCAGGTTCGGTTT+CGG 0.309512 5_1:-19119759 None:intergenic
AAGTTAAGAAAACTAGTTTA+GGG 0.326960 5_1:+19120026 Msa0721970:CDS
ACTGCGTAATGCAAAATTTA+GGG 0.328314 5_1:-19119623 None:intergenic
AACTCACTAAGTATAATATC+AGG 0.335954 5_1:-19124007 None:intergenic
ATCAATAATGGACTCAATAA+TGG 0.336122 5_1:+19123815 Msa0721970:CDS
TCGGTACTCCTATTTGGATT+TGG 0.336972 5_1:+19123769 Msa0721970:CDS
CTAGAAGTTGGTCTATTGTT+TGG 0.346137 5_1:+19124274 Msa0721970:CDS
GAAGTTAGAAAGCAAGTTAA+AGG 0.346938 5_1:+19124540 Msa0721970:CDS
AGAAAAGAAGAACAATGATT+TGG 0.350025 5_1:+19120072 Msa0721970:CDS
ATCTTATATGTTATCCCATC+TGG 0.354321 5_1:-19124442 None:intergenic
GAAGATGTTGATTCTCTGTT+TGG 0.361541 5_1:-19119907 None:intergenic
AGTGGATTGGCTATCAATAA+TGG 0.373898 5_1:+19123803 Msa0721970:CDS
AAGAGGGGTTTGAGATTAAG+AGG 0.381353 5_1:+19124341 Msa0721970:CDS
GTCATCAACCAAATCCAAAT+AGG 0.396507 5_1:-19123777 None:intergenic
TCAACAGAAGTTTCAATTTG+AGG 0.397293 5_1:+19119928 Msa0721970:CDS
AATAAACCCGAAACCGAACC+TGG 0.404728 5_1:+19119752 Msa0721970:CDS
CAAGAGCTGTTGGATAACTA+TGG 0.418865 5_1:+19124595 Msa0721970:CDS
GGTTTAGTGGAGATGGAGAA+TGG 0.418935 5_1:-19119687 None:intergenic
GGTGATCAAGGTGCATCATT+AGG 0.424389 5_1:+19120313 Msa0721970:CDS
AAATGTACACATCCCATGTT+AGG 0.435203 5_1:-19123692 None:intergenic
TCCAAATAGGAGTACCGATC+AGG 0.438387 5_1:-19123764 None:intergenic
ATATCTGCTCATGAATTTGA+AGG 0.439074 5_1:+19124241 Msa0721970:CDS
GTATATAGCGATTGCTCTGA+TGG 0.440944 5_1:+19124876 Msa0721970:exon
TAAAGTTGACCTACATTACT+TGG 0.445820 5_1:-19124625 None:intergenic
TGGGGTGAAAATTAGTGAGT+TGG 0.449163 5_1:+19120156 Msa0721970:CDS
ACTCAAATGCCACATCTACT+TGG 0.459803 5_1:+19124509 Msa0721970:CDS
TTCAATTTGAGGAAGAATTG+AGG 0.460770 5_1:+19119939 Msa0721970:CDS
GAAGAACAATGATTTGGAGT+TGG 0.466825 5_1:+19120078 Msa0721970:CDS
GATTTGGTTGATGACATTAG+TGG 0.467108 5_1:+19123785 Msa0721970:CDS
CATGGGATGTGTACATTTGT+TGG 0.467845 5_1:+19123697 Msa0721970:CDS
TTAGTGAGTTTGATGATGAA+TGG 0.469717 5_1:+19124020 Msa0721970:CDS
AACGTGCGACGTGGCTCGGA+TGG 0.474912 5_1:+19124821 Msa0721970:CDS
AAAGAGGAAATGTGTGAGAG+AGG 0.479885 5_1:+19119965 Msa0721970:CDS
AAGAGGAAATGTGTGAGAGA+GGG 0.485749 5_1:+19119966 Msa0721970:CDS
GTTTGAACGAGACCCAGGTT+CGG 0.492231 5_1:-19119765 None:intergenic
GGTGAAAATTAGTGAGTTGG+AGG 0.492346 5_1:+19120159 Msa0721970:CDS
TGGCTATGGTACACCTAACA+TGG 0.495098 5_1:+19123679 Msa0721970:CDS
CTGATGGAAACAATGTTTAG+TGG 0.498051 5_1:+19124892 Msa0721970:three_prime_UTR
ATAAATTGACACTTTAACTT+CGG 0.498881 5_1:-19124194 None:intergenic
GCTAAACGTGCGACGTGGCT+CGG 0.499279 5_1:+19124817 Msa0721970:CDS
GAAAGTGATGAAATTCTCTC+AGG 0.500322 5_1:+19124070 Msa0721970:CDS
GTGTCAATTTATCCTAATAG+AGG 0.512081 5_1:+19124205 Msa0721970:CDS
CATGCATCTCCTGCACCAGA+TGG 0.517694 5_1:+19124427 Msa0721970:CDS
GGTTGATGACATTAGTGGAT+TGG 0.519201 5_1:+19123790 Msa0721970:CDS
AGTGGGATGACAGAAAGAAA+TGG 0.519842 5_1:-19123852 None:intergenic
GTTTAGTGGAGATGGAGAAT+GGG 0.520708 5_1:-19119686 None:intergenic
AAAAGGAGGAAGGGTGATCA+AGG 0.524536 5_1:+19120301 Msa0721970:CDS
TGTTGAAAGTTGATCCTGAT+CGG 0.525860 5_1:+19123750 Msa0721970:CDS
GAATTGAACCTCCCATGAAA+AGG 0.526968 5_1:+19120284 Msa0721970:CDS
AGTGAGGCTAGGGTTGATGC+TGG 0.527054 5_1:+19120199 Msa0721970:CDS
TATGTTATCCCATCTGGTGC+AGG 0.528276 5_1:-19124436 None:intergenic
GTGCTGCAGATGGTTGTTGT+TGG 0.531203 5_1:+19124398 Msa0721970:CDS
GAAGAAGATTAGTGAGGCTA+GGG 0.531417 5_1:+19120189 Msa0721970:CDS
GGCATAGAACCAAGTAATGT+AGG 0.532485 5_1:+19124616 Msa0721970:CDS
AGAGATTGGGAATGAGATTG+TGG 0.534715 5_1:+19120243 Msa0721970:CDS
GTGAATTGTTGACTTACTAG+TGG 0.542926 5_1:-19123870 None:intergenic
GGAAGAATTGAGGAAGAAAG+AGG 0.549439 5_1:+19119949 Msa0721970:CDS
TGGTCGTTTGAACGAGACCC+AGG 0.550224 5_1:-19119770 None:intergenic
GGGAAAGTGAAACTAGAAGT+TGG 0.554485 5_1:+19124262 Msa0721970:CDS
GGAGGTTCAATTCTTTGCAA+AGG 0.554500 5_1:-19120274 None:intergenic
ACGTGCGACGTGGCTCGGAT+GGG 0.554509 5_1:+19124822 Msa0721970:CDS
GATCCAAATATGAGTTATGC+GGG 0.556800 5_1:+19124565 Msa0721970:CDS
TATCCTAATAGAGGTATCAA+AGG 0.564025 5_1:+19124214 Msa0721970:CDS
ACCTCCCATGAAAAGGAGGA+AGG 0.564040 5_1:+19120291 Msa0721970:CDS
TGAAGAAGATTAGTGAGGCT+AGG 0.565659 5_1:+19120188 Msa0721970:CDS
TAAGTAATGTTGTATAAACA+TGG 0.567349 5_1:-19123952 None:intergenic
GTGAGGCTAGGGTTGATGCT+GGG 0.572851 5_1:+19120200 Msa0721970:CDS
TATCTGCTCATGAATTTGAA+GGG 0.578816 5_1:+19124242 Msa0721970:CDS
CCACATCTACTTGGATTGCA+AGG 0.580563 5_1:+19124518 Msa0721970:CDS
TATAGAAGAGAGCTCACAAG+TGG 0.587113 5_1:+19123649 Msa0721970:intron
ATGCATCTCCTGCACCAGAT+GGG 0.589805 5_1:+19124428 Msa0721970:CDS
ACTCACTAAGTATAATATCA+GGG 0.594109 5_1:-19124006 None:intergenic
CCTCCCATGAAAAGGAGGAA+GGG 0.594242 5_1:+19120292 Msa0721970:CDS
CATCTCAAGAACATGACTAT+CGG 0.607263 5_1:-19123900 None:intergenic
CAAGTGGAGAACAATGGCTA+TGG 0.609468 5_1:+19123665 Msa0721970:CDS
CCTTGCAATCCAAGTAGATG+TGG 0.615060 5_1:-19124518 None:intergenic
GTTCGTGTACAAGAATGACC+TGG 0.619017 5_1:-19124478 None:intergenic
TTGAACCTCCCATGAAAAGG+AGG 0.626318 5_1:+19120287 Msa0721970:CDS
ACTGCTAGATGTGCTGCAGA+TGG 0.631118 5_1:+19124388 Msa0721970:CDS
TTCAAACGACCATATGAACA+TGG 0.632439 5_1:+19119781 Msa0721970:CDS
GGGTATGAAACAAGAGCTGT+TGG 0.632928 5_1:+19124585 Msa0721970:CDS
AATAATGGACTCAATAATGG+AGG 0.634814 5_1:+19123818 Msa0721970:CDS
TGATCCAAATATGAGTTATG+CGG 0.636992 5_1:+19124564 Msa0721970:CDS
ATAAACCCGAAACCGAACCT+GGG 0.644214 5_1:+19119753 Msa0721970:CDS
TACAACATTACTTAATCACG+AGG 0.647600 5_1:+19123961 Msa0721970:CDS
TTCGTGTACAAGAATGACCT+GGG 0.654913 5_1:-19124477 None:intergenic
GGCTATGGTACACCTAACAT+GGG 0.658576 5_1:+19123680 Msa0721970:CDS
TGAATTGTTGACTTACTAGT+GGG 0.663929 5_1:-19123869 None:intergenic
GAGATTAACATTGATGAGCA+TGG 0.664972 5_1:+19124127 Msa0721970:CDS
ATCAATGAAGAAGATTAGTG+AGG 0.665581 5_1:+19120183 Msa0721970:CDS
GATGATGAATGGAGAGTGAG+TGG 0.667600 5_1:+19124031 Msa0721970:CDS
AAGATTAAGTCATACAACCC+AGG 0.678278 5_1:+19124460 Msa0721970:CDS
AGCTCACAAGTGGAGAACAA+TGG 0.680339 5_1:+19123659 Msa0721970:CDS
GATTGGGAATGAGATTGTGG+AGG 0.716006 5_1:+19120246 Msa0721970:CDS
ACAACATTACTTAATCACGA+GGG 0.719512 5_1:+19123962 Msa0721970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGATTTAATTAATATTA+AGG + chr5_1:19121434-19121453 Msa0721970:intron 10.0%
!!! TACTTTTCTTTTTTTAATTA+CGG - chr5_1:19122004-19122023 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG - chr5_1:19122262-19122281 None:intergenic 10.0%
!! TAAAAAAAAAGAATATCTTA+CGG + chr5_1:19122928-19122947 Msa0721970:intron 10.0%
!! ACAATTTAAGTGAAATTTAA+CGG + chr5_1:19120614-19120633 Msa0721970:intron 15.0%
!!! TAAGTTATGATTTGTAATTA+AGG - chr5_1:19121041-19121060 None:intergenic 15.0%
!!! AGAGAAAACAATATATTTTT+TGG - chr5_1:19121246-19121265 None:intergenic 15.0%
!!! AATTAAATCATTGATTTCTT+AGG - chr5_1:19121427-19121446 None:intergenic 15.0%
!!! ACTTTTCTTTTTTTAATTAC+GGG - chr5_1:19122003-19122022 None:intergenic 15.0%
!! AGAAAAAAAACTGAAATATA+AGG - chr5_1:19122069-19122088 None:intergenic 15.0%
!!! TTTTGCAATTTATATCAAAA+TGG + chr5_1:19123371-19123390 Msa0721970:intron 15.0%
!! TTTGCAATTTATATCAAAAT+GGG + chr5_1:19123372-19123391 Msa0721970:intron 15.0%
!!! TTTTTTTGACAATAGTATTT+TGG + chr5_1:19124982-19125001 Msa0721970:three_prime_UTR 15.0%
!!! AATTGAAACTTTTGAAGAAA+GGG - chr5_1:19119713-19119732 None:intergenic 20.0%
!!! AAATTGAAACTTTTGAAGAA+AGG - chr5_1:19119714-19119733 None:intergenic 20.0%
!!! AAGTTAAGAAAACTAGTTTA+GGG + chr5_1:19120026-19120045 Msa0721970:CDS 20.0%
!! ATCATTAGGTATGAAAATTA+TGG + chr5_1:19120327-19120346 Msa0721970:intron 20.0%
!!! TATTTTGTAAGAGAGTAAAT+TGG + chr5_1:19120689-19120708 Msa0721970:intron 20.0%
!!! ATTTTGTAAGAGAGTAAATT+GGG + chr5_1:19120690-19120709 Msa0721970:intron 20.0%
!!! ATTTTTTGGTAGAGTATAAA+AGG - chr5_1:19121232-19121251 None:intergenic 20.0%
!!! TTAATGCTTGTTCTTATTTA+AGG + chr5_1:19121398-19121417 Msa0721970:intron 20.0%
!! TTAAGGAATTACTATTTCAA+TGG + chr5_1:19121451-19121470 Msa0721970:intron 20.0%
!! TAAGGAATTACTATTTCAAT+GGG + chr5_1:19121452-19121471 Msa0721970:intron 20.0%
!! TGAAAATTCAATAACCAATT+CGG + chr5_1:19121478-19121497 Msa0721970:intron 20.0%
!! AATTCCAATCAATTTATGTA+AGG + chr5_1:19121517-19121536 Msa0721970:intron 20.0%
!!! TGTATAATAGTAGTTCTTTT+AGG + chr5_1:19121832-19121851 Msa0721970:intron 20.0%
!!! GTATAATAGTAGTTCTTTTA+GGG + chr5_1:19121833-19121852 Msa0721970:intron 20.0%
!! TGAAGAAATGTAATATTATG+AGG + chr5_1:19122210-19122229 Msa0721970:intron 20.0%
!! GAAGAAATGTAATATTATGA+GGG + chr5_1:19122211-19122230 Msa0721970:intron 20.0%
!! TCTTACAGTTATATATACTT+TGG + chr5_1:19122310-19122329 Msa0721970:intron 20.0%
!! AAGAAATAAAAATGAGCATA+TGG - chr5_1:19122634-19122653 None:intergenic 20.0%
!!! TAAAAGTGTATATAAGCATA+TGG - chr5_1:19122695-19122714 None:intergenic 20.0%
!!! AATTAAGAATTTTAGAAGCA+TGG - chr5_1:19122804-19122823 None:intergenic 20.0%
!!! AATAAATAAGAGCATATACA+TGG - chr5_1:19122844-19122863 None:intergenic 20.0%
!! ATACTCAAATCATAAACAAA+AGG - chr5_1:19122973-19122992 None:intergenic 20.0%
!!! ACAGTTTCTTTTATTCTATT+AGG + chr5_1:19123584-19123603 Msa0721970:intron 20.0%
!! TAAGTAATGTTGTATAAACA+TGG - chr5_1:19123955-19123974 None:intergenic 20.0%
!!! ATAAATTGACACTTTAACTT+CGG - chr5_1:19124197-19124216 None:intergenic 20.0%
!!! TATTTTGGATACAAGTATTT+TGG + chr5_1:19124997-19125016 Msa0721970:three_prime_UTR 20.0%
!!! ATTGAAACTTTTGAAGAAAG+GGG - chr5_1:19119712-19119731 None:intergenic 25.0%
!! GAAGTTAAGAAAACTAGTTT+AGG + chr5_1:19120025-19120044 Msa0721970:CDS 25.0%
! AGAAAAGAAGAACAATGATT+TGG + chr5_1:19120072-19120091 Msa0721970:CDS 25.0%
! AGAACAAGAAAAATGCATTT+GGG + chr5_1:19120137-19120156 Msa0721970:CDS 25.0%
! CAATATTAGTTATCACCTAA+GGG - chr5_1:19120578-19120597 None:intergenic 25.0%
! ACAATATTAGTTATCACCTA+AGG - chr5_1:19120579-19120598 None:intergenic 25.0%
! ATTTAAGTGAAATTTAACGG+AGG + chr5_1:19120617-19120636 Msa0721970:intron 25.0%
! TTTAAGTGAAATTTAACGGA+GGG + chr5_1:19120618-19120637 Msa0721970:intron 25.0%
! TTTCCTGTGTAAAATTGTTA+GGG + chr5_1:19120650-19120669 Msa0721970:intron 25.0%
! AAAATTGTTAGGGACTAATT+TGG + chr5_1:19120660-19120679 Msa0721970:intron 25.0%
! AAATTGTTAGGGACTAATTT+GGG + chr5_1:19120661-19120680 Msa0721970:intron 25.0%
! TTATGTCCTATTGAAATCAA+TGG + chr5_1:19120846-19120865 Msa0721970:intron 25.0%
! AACATAAACTCATTTAGCAT+TGG + chr5_1:19120966-19120985 Msa0721970:intron 25.0%
! ACATAAACTCATTTAGCATT+GGG + chr5_1:19120967-19120986 Msa0721970:intron 25.0%
! TCAACCTTACATAAATTGAT+TGG - chr5_1:19121524-19121543 None:intergenic 25.0%
! AATCATGATTAAGATGTCAA+GGG + chr5_1:19121636-19121655 Msa0721970:intron 25.0%
!! AAACACACTCTAAATGATTT+TGG - chr5_1:19122093-19122112 None:intergenic 25.0%
!! AAAATCATTTAGAGTGTGTT+TGG + chr5_1:19122092-19122111 Msa0721970:intron 25.0%
! ACAATGCTAATCTAATCAAT+AGG - chr5_1:19122396-19122415 None:intergenic 25.0%
!!! TTTTTAGGATTACAAGGATT+TGG + chr5_1:19122540-19122559 Msa0721970:intron 25.0%
! ATATACATGGTTAGTACAAA+AGG - chr5_1:19122831-19122850 None:intergenic 25.0%
! AGGAAATGTTAGATTTGAAA+TGG + chr5_1:19123009-19123028 Msa0721970:intron 25.0%
! ATATATCCAAGCATCTTATA+TGG + chr5_1:19123200-19123219 Msa0721970:intron 25.0%
!!! TCTTGTTAGATTTGTTATTC+AGG - chr5_1:19123431-19123450 None:intergenic 25.0%
! TGAATAACAAATCTAACAAG+AGG + chr5_1:19123430-19123449 Msa0721970:intron 25.0%
!!! ATCAATAATGGACTCAATAA+TGG + chr5_1:19123815-19123834 Msa0721970:CDS 25.0%
! ACTCACTAAGTATAATATCA+GGG - chr5_1:19124009-19124028 None:intergenic 25.0%
! AACTCACTAAGTATAATATC+AGG - chr5_1:19124010-19124029 None:intergenic 25.0%
!! ATTTCATCACTTTCATTTTG+AGG - chr5_1:19124064-19124083 None:intergenic 25.0%
! TCACATAGATGAAGAAAAAA+GGG + chr5_1:19124099-19124118 Msa0721970:CDS 25.0%
!!! TAGAGATTTTGTTATACAAG+AGG + chr5_1:19124324-19124343 Msa0721970:CDS 25.0%
!!! AGAGATTTTGTTATACAAGA+GGG + chr5_1:19124325-19124344 Msa0721970:CDS 25.0%
! TAAGAGGATAAAAAACGAAA+AGG + chr5_1:19124357-19124376 Msa0721970:CDS 25.0%
!! CAATGTTTAGTGGTTTATTT+TGG + chr5_1:19124902-19124921 Msa0721970:three_prime_UTR 25.0%
!! TTGAAACTTTTGAAGAAAGG+GGG - chr5_1:19119711-19119730 None:intergenic 30.0%
! TCATGTTTTCCATGTTCATA+TGG - chr5_1:19119793-19119812 None:intergenic 30.0%
AAACATGAGCATTCAAGATT+TGG + chr5_1:19119805-19119824 Msa0721970:CDS 30.0%
TCAACAGAAGTTTCAATTTG+AGG + chr5_1:19119928-19119947 Msa0721970:CDS 30.0%
TTCAATTTGAGGAAGAATTG+AGG + chr5_1:19119939-19119958 Msa0721970:CDS 30.0%
!!! TAGAAAAAGAGTTGGTGTTT+TGG + chr5_1:19120114-19120133 Msa0721970:CDS 30.0%
GAGAACAAGAAAAATGCATT+TGG + chr5_1:19120136-19120155 Msa0721970:CDS 30.0%
GAACAAGAAAAATGCATTTG+GGG + chr5_1:19120138-19120157 Msa0721970:CDS 30.0%
ATCAATGAAGAAGATTAGTG+AGG + chr5_1:19120183-19120202 Msa0721970:CDS 30.0%
CTGTTGAAGAAAAAGAGATT+GGG + chr5_1:19120230-19120249 Msa0721970:CDS 30.0%
ACAATTGTCAGAGACTAATT+TGG - chr5_1:19120490-19120509 None:intergenic 30.0%
GTTTCCTGTGTAAAATTGTT+AGG + chr5_1:19120649-19120668 Msa0721970:intron 30.0%
AGATTGTTAGGGGTTAATTT+GGG + chr5_1:19120718-19120737 Msa0721970:intron 30.0%
!! ATTGGACCATTGATTTCAAT+AGG - chr5_1:19120855-19120874 None:intergenic 30.0%
ATTAAAAGCTCTCTTGCATA+AGG - chr5_1:19121007-19121026 None:intergenic 30.0%
! TTCCTTAATGATAAGTGTTG+GGG - chr5_1:19121165-19121184 None:intergenic 30.0%
GTTCCTTAATGATAAGTGTT+GGG - chr5_1:19121166-19121185 None:intergenic 30.0%
!! ACTTTTTGGTAACACAAAGA+TGG - chr5_1:19121188-19121207 None:intergenic 30.0%
!! ACACAAAGATGCTTACTTTT+TGG - chr5_1:19121202-19121221 None:intergenic 30.0%
ATTGATGCTCTATACTCATT+TGG + chr5_1:19121364-19121383 Msa0721970:intron 30.0%
ATCATGATTCATGACACAAT+TGG - chr5_1:19121625-19121644 None:intergenic 30.0%
GAATCATGATTAAGATGTCA+AGG + chr5_1:19121635-19121654 Msa0721970:intron 30.0%
GAATGGGAACAGTTATTTAA+AGG + chr5_1:19121708-19121727 Msa0721970:intron 30.0%
!! TCTTTTTAAGCAGTAAGCTT+AGG + chr5_1:19121765-19121784 Msa0721970:intron 30.0%
!! CTTTTTAAGCAGTAAGCTTA+GGG + chr5_1:19121766-19121785 Msa0721970:intron 30.0%
! GGAAGAAATATGTCATGTTT+TGG + chr5_1:19121787-19121806 Msa0721970:intron 30.0%
! TTTGGATTTAGAGTTTAGGA+GGG - chr5_1:19122042-19122061 None:intergenic 30.0%
! TGTGTTTGGATTTAGAGTTT+AGG - chr5_1:19122046-19122065 None:intergenic 30.0%
ACTGAAATATAAGGTGTGTT+TGG - chr5_1:19122060-19122079 None:intergenic 30.0%
GAGGGAATTCAAATACTTTA+AGG + chr5_1:19122148-19122167 Msa0721970:intron 30.0%
TTAAGGTGAATTCCATTGTT+TGG + chr5_1:19122165-19122184 Msa0721970:intron 30.0%
TGTGTTTGGATGAAGTAATT+TGG - chr5_1:19122289-19122308 None:intergenic 30.0%
! TATAACTGTAAGAGTGTGTT+TGG - chr5_1:19122303-19122322 None:intergenic 30.0%
TGTTCTATTGTGTTCTTTGT+AGG - chr5_1:19122342-19122361 None:intergenic 30.0%
! TGTTTTATACTCCTCATTGT+TGG + chr5_1:19122368-19122387 Msa0721970:intron 30.0%
!!! TTTCTTGTTCCTGTTGTTTT+CGG + chr5_1:19122513-19122532 Msa0721970:intron 30.0%
AAAAAAACACCGAAAACAAC+AGG - chr5_1:19122525-19122544 None:intergenic 30.0%
!!! GTTGTTTTCGGTGTTTTTTT+AGG + chr5_1:19122525-19122544 Msa0721970:intron 30.0%
!!! GGTGTTTTTTTAGGATTACA+AGG + chr5_1:19122534-19122553 Msa0721970:intron 30.0%
! ATGTCTTTGTTTGTTTGATG+TGG + chr5_1:19122716-19122735 Msa0721970:intron 30.0%
! TGTCTTTGTTTGTTTGATGT+GGG + chr5_1:19122717-19122736 Msa0721970:intron 30.0%
TCTCTTACTTGAGTATCTTA+TGG + chr5_1:19122897-19122916 Msa0721970:intron 30.0%
! GTATTTGTCACTGTATTGAT+AGG + chr5_1:19122989-19123008 Msa0721970:intron 30.0%
GTAGGGAAAAATAATCTCTT+GGG + chr5_1:19123066-19123085 Msa0721970:intron 30.0%
TAGGGAAAAATAATCTCTTG+GGG + chr5_1:19123067-19123086 Msa0721970:intron 30.0%
!!! GGTTTCTAAGGTATTTTACA+TGG + chr5_1:19123119-19123138 Msa0721970:intron 30.0%
AAAAGCTGTCAAAAATGACA+AGG - chr5_1:19123512-19123531 None:intergenic 30.0%
AGAAACTGTTAACAATGACA+GGG - chr5_1:19123573-19123592 None:intergenic 30.0%
AAGAAACTGTTAACAATGAC+AGG - chr5_1:19123574-19123593 None:intergenic 30.0%
!! AATAATGGACTCAATAATGG+AGG + chr5_1:19123818-19123837 Msa0721970:CDS 30.0%
!! TGAATTGTTGACTTACTAGT+GGG - chr5_1:19123872-19123891 None:intergenic 30.0%
TACAACATTACTTAATCACG+AGG + chr5_1:19123961-19123980 Msa0721970:CDS 30.0%
ACAACATTACTTAATCACGA+GGG + chr5_1:19123962-19123981 Msa0721970:CDS 30.0%
!! TTAGTGAGTTTGATGATGAA+TGG + chr5_1:19124020-19124039 Msa0721970:CDS 30.0%
GTCACATAGATGAAGAAAAA+AGG + chr5_1:19124098-19124117 Msa0721970:CDS 30.0%
GTGTCAATTTATCCTAATAG+AGG + chr5_1:19124205-19124224 Msa0721970:CDS 30.0%
!! TATCCTAATAGAGGTATCAA+AGG + chr5_1:19124214-19124233 Msa0721970:CDS 30.0%
TTTCCTTTGATACCTCTATT+AGG - chr5_1:19124220-19124239 None:intergenic 30.0%
ATATCTGCTCATGAATTTGA+AGG + chr5_1:19124241-19124260 Msa0721970:CDS 30.0%
TATCTGCTCATGAATTTGAA+GGG + chr5_1:19124242-19124261 Msa0721970:CDS 30.0%
!! GAGATTTTGTTATACAAGAG+GGG + chr5_1:19124326-19124345 Msa0721970:CDS 30.0%
ATCTTATATGTTATCCCATC+TGG - chr5_1:19124445-19124464 None:intergenic 30.0%
GAAGTTAGAAAGCAAGTTAA+AGG + chr5_1:19124540-19124559 Msa0721970:CDS 30.0%
TGATCCAAATATGAGTTATG+CGG + chr5_1:19124564-19124583 Msa0721970:CDS 30.0%
TAAAGTTGACCTACATTACT+TGG - chr5_1:19124628-19124647 None:intergenic 30.0%
ACTTTATCGTGCAAGAAAAA+AGG + chr5_1:19124642-19124661 Msa0721970:CDS 30.0%
!!! GTATCTTAGTTTTATCTCTC+TGG - chr5_1:19124715-19124734 None:intergenic 30.0%
GAGAGATAAAACTAAGATAC+AGG + chr5_1:19124715-19124734 Msa0721970:intron 30.0%
!!! TGTTTAGTGGTTTATTTTGG+AGG + chr5_1:19124905-19124924 Msa0721970:three_prime_UTR 30.0%
! TCAATTTTTCGTGCTTCTCA+TGG + chr5_1:19119727-19119746 Msa0721970:exon 35.0%
TTCAAACGACCATATGAACA+TGG + chr5_1:19119781-19119800 Msa0721970:CDS 35.0%
!! GAAGATGTTGATTCTCTGTT+TGG - chr5_1:19119910-19119929 None:intergenic 35.0%
! GAAGAACAATGATTTGGAGT+TGG + chr5_1:19120078-19120097 Msa0721970:CDS 35.0%
TCTGAGCTTAGAAAAAGAGT+TGG + chr5_1:19120106-19120125 Msa0721970:CDS 35.0%
GCTGTTGAAGAAAAAGAGAT+TGG + chr5_1:19120229-19120248 Msa0721970:CDS 35.0%
GAATCGCGTTCAAATTGTTA+GGG - chr5_1:19120428-19120447 None:intergenic 35.0%
TGAATCGCGTTCAAATTGTT+AGG - chr5_1:19120429-19120448 None:intergenic 35.0%
!! ACGCGATTCAATTTTGTTTC+TGG + chr5_1:19120439-19120458 Msa0721970:intron 35.0%
ATTGTAGCACATTATTCCCA+CGG + chr5_1:19120505-19120524 Msa0721970:intron 35.0%
! ATGATTTAAAACACGCCCTT+AGG + chr5_1:19120560-19120579 Msa0721970:intron 35.0%
! AGTCCCTAACAATTTTACAC+AGG - chr5_1:19120656-19120675 None:intergenic 35.0%
CAGATTGTTAGGGGTTAATT+TGG + chr5_1:19120717-19120736 Msa0721970:intron 35.0%
! AATGGTCCAATTTGTTCAAC+TGG + chr5_1:19120864-19120883 Msa0721970:intron 35.0%
TCTAATTCGATGATGAGTGA+TGG - chr5_1:19120922-19120941 None:intergenic 35.0%
! CATTTAGCATTGGGTTGTTA+TGG + chr5_1:19120976-19120995 Msa0721970:intron 35.0%
!! TAATGATAAGTGTTGGGGAT+GGG - chr5_1:19121160-19121179 None:intergenic 35.0%
!! TTAATGATAAGTGTTGGGGA+TGG - chr5_1:19121161-19121180 None:intergenic 35.0%
ATCCCCAACACTTATCATTA+AGG + chr5_1:19121160-19121179 Msa0721970:intron 35.0%
GGTTCCTTAATGATAAGTGT+TGG - chr5_1:19121167-19121186 None:intergenic 35.0%
AACAGGACAACAACATTGAT+TGG - chr5_1:19121284-19121303 None:intergenic 35.0%
AATCAACACACGAATGAAAC+AGG - chr5_1:19121301-19121320 None:intergenic 35.0%
! TTTCTAGACTAGAGAAGCAT+GGG - chr5_1:19121339-19121358 None:intergenic 35.0%
! ATTTCTAGACTAGAGAAGCA+TGG - chr5_1:19121340-19121359 None:intergenic 35.0%
CATGATTTCATCTTCCGAAT+TGG - chr5_1:19121495-19121514 None:intergenic 35.0%
!! TATGAAAACTCCTCTAGGAT+AGG - chr5_1:19121561-19121580 None:intergenic 35.0%
TTGAGTATGAAAACTCCTCT+AGG - chr5_1:19121566-19121585 None:intergenic 35.0%
ATGATTAAGATGTCAAGGGT+TGG + chr5_1:19121640-19121659 Msa0721970:intron 35.0%
AAAGGTTAATGAGAGAAGAG+AGG + chr5_1:19121726-19121745 Msa0721970:intron 35.0%
AAGGTTAATGAGAGAAGAGA+GGG + chr5_1:19121727-19121746 Msa0721970:intron 35.0%
!!! CATGTTTTGGAGCTTTTATG+AGG + chr5_1:19121800-19121819 Msa0721970:intron 35.0%
!!! GTAGTTCTTTTAGGGTGTTT+TGG + chr5_1:19121841-19121860 Msa0721970:intron 35.0%
!!! TTCTTTTAGGGTGTTTTGGA+TGG + chr5_1:19121845-19121864 Msa0721970:intron 35.0%
! TTGGATTTAGAGTTTAGGAG+GGG - chr5_1:19122041-19122060 None:intergenic 35.0%
! GTTTGGATTTAGAGTTTAGG+AGG - chr5_1:19122043-19122062 None:intergenic 35.0%
! TCATTTAGAGTGTGTTTGGA+TGG + chr5_1:19122096-19122115 Msa0721970:intron 35.0%
! CATTTAGAGTGTGTTTGGAT+GGG + chr5_1:19122097-19122116 Msa0721970:intron 35.0%
! ATTTAGAGTGTGTTTGGATG+GGG + chr5_1:19122098-19122117 Msa0721970:intron 35.0%
TGAGGGAATGTAATGTTATG+AGG + chr5_1:19122129-19122148 Msa0721970:intron 35.0%
GAGGGAATGTAATGTTATGA+GGG + chr5_1:19122130-19122149 Msa0721970:intron 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr5_1:19122170-19122189 Msa0721970:intron 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr5_1:19122171-19122190 Msa0721970:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr5_1:19122229-19122248 Msa0721970:intron 35.0%
ATCAATAGGAACCAACAATG+AGG - chr5_1:19122382-19122401 None:intergenic 35.0%
ACTGAGCTCATGTTATCTTT+AGG + chr5_1:19122767-19122786 Msa0721970:intron 35.0%
GGTAGGGAAAAATAATCTCT+TGG + chr5_1:19123065-19123084 Msa0721970:intron 35.0%
TCTTGGGGAAAAAAAAATCC+AGG + chr5_1:19123082-19123101 Msa0721970:intron 35.0%
CTTGGGGAAAAAAAAATCCA+GGG + chr5_1:19123083-19123102 Msa0721970:intron 35.0%
!!! GGTATTTTACATGGTGCTAT+TGG + chr5_1:19123128-19123147 Msa0721970:intron 35.0%
AGGTTATTCTAGCAATCTGT+TGG - chr5_1:19123411-19123430 None:intergenic 35.0%
AAATCTAACAAGAGGTAGAG+AGG + chr5_1:19123438-19123457 Msa0721970:intron 35.0%
AAATGTACACATCCCATGTT+AGG - chr5_1:19123695-19123714 None:intergenic 35.0%
!! CATTTGTTGGTGCATTTTGA+TGG + chr5_1:19123710-19123729 Msa0721970:CDS 35.0%
! TGTTGAAAGTTGATCCTGAT+CGG + chr5_1:19123750-19123769 Msa0721970:CDS 35.0%
GTCATCAACCAAATCCAAAT+AGG - chr5_1:19123780-19123799 None:intergenic 35.0%
!! GATTTGGTTGATGACATTAG+TGG + chr5_1:19123785-19123804 Msa0721970:CDS 35.0%
!! AGTGGATTGGCTATCAATAA+TGG + chr5_1:19123803-19123822 Msa0721970:CDS 35.0%
!! GTGAATTGTTGACTTACTAG+TGG - chr5_1:19123873-19123892 None:intergenic 35.0%
CATCTCAAGAACATGACTAT+CGG - chr5_1:19123903-19123922 None:intergenic 35.0%
!! TCATCACTTTCATTTTGAGG+AGG - chr5_1:19124061-19124080 None:intergenic 35.0%
GAAAGTGATGAAATTCTCTC+AGG + chr5_1:19124070-19124089 Msa0721970:CDS 35.0%
GAGATTAACATTGATGAGCA+TGG + chr5_1:19124127-19124146 Msa0721970:CDS 35.0%
! CTAGAAGTTGGTCTATTGTT+TGG + chr5_1:19124274-19124293 Msa0721970:CDS 35.0%
AAGATTAAGTCATACAACCC+AGG + chr5_1:19124460-19124479 Msa0721970:CDS 35.0%
GATCCAAATATGAGTTATGC+GGG + chr5_1:19124565-19124584 Msa0721970:CDS 35.0%
ATACCCGCATAACTCATATT+TGG - chr5_1:19124571-19124590 None:intergenic 35.0%
CTGATGGAAACAATGTTTAG+TGG + chr5_1:19124892-19124911 Msa0721970:three_prime_UTR 35.0%
!!! TGGTTTATTTTGGAGGATTC+TGG + chr5_1:19124912-19124931 Msa0721970:three_prime_UTR 35.0%
GTTTAGTGGAGATGGAGAAT+GGG - chr5_1:19119689-19119708 None:intergenic 40.0%
TTTGAAGAAAGGGGGTTTAG+TGG - chr5_1:19119703-19119722 None:intergenic 40.0%
GGAAGAATTGAGGAAGAAAG+AGG + chr5_1:19119949-19119968 Msa0721970:CDS 40.0%
AAAGAGGAAATGTGTGAGAG+AGG + chr5_1:19119965-19119984 Msa0721970:CDS 40.0%
AAGAGGAAATGTGTGAGAGA+GGG + chr5_1:19119966-19119985 Msa0721970:CDS 40.0%
TGGGGTGAAAATTAGTGAGT+TGG + chr5_1:19120156-19120175 Msa0721970:CDS 40.0%
! GGTGAAAATTAGTGAGTTGG+AGG + chr5_1:19120159-19120178 Msa0721970:CDS 40.0%
TGAAGAAGATTAGTGAGGCT+AGG + chr5_1:19120188-19120207 Msa0721970:CDS 40.0%
GAAGAAGATTAGTGAGGCTA+GGG + chr5_1:19120189-19120208 Msa0721970:CDS 40.0%
AGAGATTGGGAATGAGATTG+TGG + chr5_1:19120243-19120262 Msa0721970:CDS 40.0%
GGAGGTTCAATTCTTTGCAA+AGG - chr5_1:19120277-19120296 None:intergenic 40.0%
GAATTGAACCTCCCATGAAA+AGG + chr5_1:19120284-19120303 Msa0721970:CDS 40.0%
AATCATACATGTCGCAGAGA+AGG - chr5_1:19120546-19120565 None:intergenic 40.0%
AATTGGGAGCTCAGATTGTT+AGG + chr5_1:19120706-19120725 Msa0721970:intron 40.0%
ATTGGGAGCTCAGATTGTTA+GGG + chr5_1:19120707-19120726 Msa0721970:intron 40.0%
CAAGCACCAGTTGAACAAAT+TGG - chr5_1:19120873-19120892 None:intergenic 40.0%
AAAGCTCTCTTGCATAAGGA+AGG - chr5_1:19121003-19121022 None:intergenic 40.0%
AATGACCATTCCTATCCTAG+AGG + chr5_1:19121548-19121567 Msa0721970:intron 40.0%
!! AAACTCCTCTAGGATAGGAA+TGG - chr5_1:19121556-19121575 None:intergenic 40.0%
GGTCTACAATCTGTTCTCTA+GGG - chr5_1:19121604-19121623 None:intergenic 40.0%
TGGTCTACAATCTGTTCTCT+AGG - chr5_1:19121605-19121624 None:intergenic 40.0%
TTAAGATGTCAAGGGTTGGA+AGG + chr5_1:19121644-19121663 Msa0721970:intron 40.0%
!!! TTTTAGGGTGTTTTGGATGG+AGG + chr5_1:19121848-19121867 Msa0721970:intron 40.0%
!! TTTAGGGTGTTTTGGATGGA+GGG + chr5_1:19121849-19121868 Msa0721970:intron 40.0%
! TTTAGAGTGTGTTTGGATGG+GGG + chr5_1:19122099-19122118 Msa0721970:intron 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr5_1:19122169-19122188 Msa0721970:intron 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr5_1:19122172-19122191 Msa0721970:intron 40.0%
TACTCAAGTAAGAGACAGCT+TGG - chr5_1:19122892-19122911 None:intergenic 40.0%
GGCATATCTGATGGTTTCTA+AGG + chr5_1:19123107-19123126 Msa0721970:intron 40.0%
! ATATATGATGACGACGACGA+TGG - chr5_1:19123186-19123205 None:intergenic 40.0%
! TCAAGCTTCAAGTTTGCGAA+AGG + chr5_1:19123479-19123498 Msa0721970:intron 40.0%
TATAGAAGAGAGCTCACAAG+TGG + chr5_1:19123649-19123668 Msa0721970:intron 40.0%
CATGGGATGTGTACATTTGT+TGG + chr5_1:19123697-19123716 Msa0721970:CDS 40.0%
TCGGTACTCCTATTTGGATT+TGG + chr5_1:19123769-19123788 Msa0721970:CDS 40.0%
!! GGTTGATGACATTAGTGGAT+TGG + chr5_1:19123790-19123809 Msa0721970:CDS 40.0%
AGTGGGATGACAGAAAGAAA+TGG - chr5_1:19123855-19123874 None:intergenic 40.0%
! AACTTCGGCAGAATTTTCAG+AGG - chr5_1:19124182-19124201 None:intergenic 40.0%
GGGAAAGTGAAACTAGAAGT+TGG + chr5_1:19124262-19124281 Msa0721970:CDS 40.0%
! AAGAGGGGTTTGAGATTAAG+AGG + chr5_1:19124341-19124360 Msa0721970:CDS 40.0%
TTCGTGTACAAGAATGACCT+GGG - chr5_1:19124480-19124499 None:intergenic 40.0%
ACTCAAATGCCACATCTACT+TGG + chr5_1:19124509-19124528 Msa0721970:CDS 40.0%
CAAGAGCTGTTGGATAACTA+TGG + chr5_1:19124595-19124614 Msa0721970:CDS 40.0%
GGCATAGAACCAAGTAATGT+AGG + chr5_1:19124616-19124635 Msa0721970:CDS 40.0%
GTATATAGCGATTGCTCTGA+TGG + chr5_1:19124876-19124895 Msa0721970:exon 40.0%
GGTTTAGTGGAGATGGAGAA+TGG - chr5_1:19119690-19119709 None:intergenic 45.0%
AATAAACCCGAAACCGAACC+TGG + chr5_1:19119752-19119771 Msa0721970:CDS 45.0%
ATAAACCCGAAACCGAACCT+GGG + chr5_1:19119753-19119772 Msa0721970:CDS 45.0%
GATTGGGAATGAGATTGTGG+AGG + chr5_1:19120246-19120265 Msa0721970:CDS 45.0%
TTGAACCTCCCATGAAAAGG+AGG + chr5_1:19120287-19120306 Msa0721970:CDS 45.0%
! TCACCCTTCCTCCTTTTCAT+GGG - chr5_1:19120298-19120317 None:intergenic 45.0%
! ATCACCCTTCCTCCTTTTCA+TGG - chr5_1:19120299-19120318 None:intergenic 45.0%
AAAAGGAGGAAGGGTGATCA+AGG + chr5_1:19120301-19120320 Msa0721970:CDS 45.0%
GGTGATCAAGGTGCATCATT+AGG + chr5_1:19120313-19120332 Msa0721970:CDS 45.0%
TTGGGAGCTCAGATTGTTAG+GGG + chr5_1:19120708-19120727 Msa0721970:intron 45.0%
TTCTCAACTTCTCTCTGCTG+TGG + chr5_1:19120809-19120828 Msa0721970:intron 45.0%
TCTCAACTTCTCTCTGCTGT+GGG + chr5_1:19120810-19120829 Msa0721970:intron 45.0%
! GTTGGAAGGTACACACAAGA+AGG + chr5_1:19121658-19121677 Msa0721970:intron 45.0%
CACAAGAAGGCTCGAGAAAA+TGG + chr5_1:19121671-19121690 Msa0721970:intron 45.0%
AGGCTCGAGAAAATGGTTGA+AGG + chr5_1:19121678-19121697 Msa0721970:intron 45.0%
! TGGTTGAAGGTGCACTTGAA+TGG + chr5_1:19121691-19121710 Msa0721970:intron 45.0%
! GGTTGAAGGTGCACTTGAAT+GGG + chr5_1:19121692-19121711 Msa0721970:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr5_1:19122111-19122130 Msa0721970:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr5_1:19122112-19122131 Msa0721970:intron 45.0%
ACATTCCCCCATCCAAACAA+TGG - chr5_1:19122180-19122199 None:intergenic 45.0%
GCTCAGTTGTGATTCTATGC+AGG - chr5_1:19122754-19122773 None:intergenic 45.0%
AGCTCCACCCTCAATGATAA+AGG + chr5_1:19123042-19123061 Msa0721970:intron 45.0%
GCTCCACCCTCAATGATAAA+GGG + chr5_1:19123043-19123062 Msa0721970:intron 45.0%
CTCCACCCTCAATGATAAAG+GGG + chr5_1:19123044-19123063 Msa0721970:intron 45.0%
TACCCCTTTATCATTGAGGG+TGG - chr5_1:19123049-19123068 None:intergenic 45.0%
ACCCTCAATGATAAAGGGGT+AGG + chr5_1:19123048-19123067 Msa0721970:intron 45.0%
CCCTACCCCTTTATCATTGA+GGG - chr5_1:19123052-19123071 None:intergenic 45.0%
CCCTCAATGATAAAGGGGTA+GGG + chr5_1:19123049-19123068 Msa0721970:intron 45.0%
TCCCTACCCCTTTATCATTG+AGG - chr5_1:19123053-19123072 None:intergenic 45.0%
GGGGAAAAAAAAATCCAGGG+AGG + chr5_1:19123086-19123105 Msa0721970:intron 45.0%
CAGACGCCATATAAGATGCT+TGG - chr5_1:19123209-19123228 None:intergenic 45.0%
AGCTCACAAGTGGAGAACAA+TGG + chr5_1:19123659-19123678 Msa0721970:CDS 45.0%
CAAGTGGAGAACAATGGCTA+TGG + chr5_1:19123665-19123684 Msa0721970:CDS 45.0%
TGGCTATGGTACACCTAACA+TGG + chr5_1:19123679-19123698 Msa0721970:CDS 45.0%
GGCTATGGTACACCTAACAT+GGG + chr5_1:19123680-19123699 Msa0721970:CDS 45.0%
TCCTGATCGGTACTCCTATT+TGG + chr5_1:19123763-19123782 Msa0721970:CDS 45.0%
!! TCCAAATAGGAGTACCGATC+AGG - chr5_1:19123767-19123786 None:intergenic 45.0%
GATGATGAATGGAGAGTGAG+TGG + chr5_1:19124031-19124050 Msa0721970:CDS 45.0%
TATGTTATCCCATCTGGTGC+AGG - chr5_1:19124439-19124458 None:intergenic 45.0%
GTTCGTGTACAAGAATGACC+TGG - chr5_1:19124481-19124500 None:intergenic 45.0%
CCTTGCAATCCAAGTAGATG+TGG - chr5_1:19124521-19124540 None:intergenic 45.0%
CCACATCTACTTGGATTGCA+AGG + chr5_1:19124518-19124537 Msa0721970:CDS 45.0%
GGGTATGAAACAAGAGCTGT+TGG + chr5_1:19124585-19124604 Msa0721970:CDS 45.0%
AAAAAGCTAAACGTGCGACG+TGG + chr5_1:19124812-19124831 Msa0721970:CDS 45.0%
GAAAGGGGGTTTAGTGGAGA+TGG - chr5_1:19119697-19119716 None:intergenic 50.0%
GTTTGAACGAGACCCAGGTT+CGG - chr5_1:19119768-19119787 None:intergenic 50.0%
ACCTCCCATGAAAAGGAGGA+AGG + chr5_1:19120291-19120310 Msa0721970:CDS 50.0%
CCTCCCATGAAAAGGAGGAA+GGG + chr5_1:19120292-19120311 Msa0721970:CDS 50.0%
TTTAGGAGGGGCAAAGAGGA+GGG - chr5_1:19122029-19122048 None:intergenic 50.0%
AGAGTTTAGGAGGGGCAAAG+AGG - chr5_1:19122033-19122052 None:intergenic 50.0%
! ATCCAGGGAGGCATATCTGA+TGG + chr5_1:19123098-19123117 Msa0721970:intron 50.0%
AACCATCAGATATGCCTCCC+TGG - chr5_1:19123103-19123122 None:intergenic 50.0%
ACTGCTAGATGTGCTGCAGA+TGG + chr5_1:19124388-19124407 Msa0721970:CDS 50.0%
GTGCTGCAGATGGTTGTTGT+TGG + chr5_1:19124398-19124417 Msa0721970:CDS 50.0%
ATGCATCTCCTGCACCAGAT+GGG + chr5_1:19124428-19124447 Msa0721970:CDS 50.0%
! ACGAGACCCAGGTTCGGTTT+CGG - chr5_1:19119762-19119781 None:intergenic 55.0%
TGGTCGTTTGAACGAGACCC+AGG - chr5_1:19119773-19119792 None:intergenic 55.0%
!! AGTGAGGCTAGGGTTGATGC+TGG + chr5_1:19120199-19120218 Msa0721970:CDS 55.0%
!! GTGAGGCTAGGGTTGATGCT+GGG + chr5_1:19120200-19120219 Msa0721970:CDS 55.0%
! CCCTTCCTCCTTTTCATGGG+AGG - chr5_1:19120295-19120314 None:intergenic 55.0%
CATTATTCCCACGGATCCCC+TGG + chr5_1:19120514-19120533 Msa0721970:intron 55.0%
GTTTAGGAGGGGCAAAGAGG+AGG - chr5_1:19122030-19122049 None:intergenic 55.0%
CATGCATCTCCTGCACCAGA+TGG + chr5_1:19124427-19124446 Msa0721970:CDS 55.0%
! CGAGACCCAGGTTCGGTTTC+GGG - chr5_1:19119761-19119780 None:intergenic 60.0%
GCAGAGAAGGCAGCAACCAG+GGG - chr5_1:19120533-19120552 None:intergenic 60.0%
CGCAGAGAAGGCAGCAACCA+GGG - chr5_1:19120534-19120553 None:intergenic 60.0%
TCGCAGAGAAGGCAGCAACC+AGG - chr5_1:19120535-19120554 None:intergenic 60.0%
GCTAAACGTGCGACGTGGCT+CGG + chr5_1:19124817-19124836 Msa0721970:CDS 60.0%
GCAGCAACCAGGGGATCCGT+GGG - chr5_1:19120524-19120543 None:intergenic 65.0%
! AACGTGCGACGTGGCTCGGA+TGG + chr5_1:19124821-19124840 Msa0721970:CDS 65.0%
! ACGTGCGACGTGGCTCGGAT+GGG + chr5_1:19124822-19124841 Msa0721970:CDS 65.0%
GGCAGCAACCAGGGGATCCG+TGG - chr5_1:19120525-19120544 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 19119625 19125045 19119625 ID=Msa0721970;Name=Msa0721970
chr5_1 mRNA 19119625 19125045 19119625 ID=Msa0721970-mRNA-1;Parent=Msa0721970;Name=Msa0721970-mRNA-1;_AED=0.26;_eAED=0.26;_QI=121|0.5|0.66|1|1|1|3|162|556
chr5_1 exon 19119625 19120334 19119625 ID=Msa0721970-mRNA-1:exon:7164;Parent=Msa0721970-mRNA-1
chr5_1 exon 19123654 19124663 19123654 ID=Msa0721970-mRNA-1:exon:7165;Parent=Msa0721970-mRNA-1
chr5_1 exon 19124812 19125045 19124812 ID=Msa0721970-mRNA-1:exon:7166;Parent=Msa0721970-mRNA-1
chr5_1 five_prime_UTR 19119625 19119745 19119625 ID=Msa0721970-mRNA-1:five_prime_utr;Parent=Msa0721970-mRNA-1
chr5_1 CDS 19119746 19120334 19119746 ID=Msa0721970-mRNA-1:cds;Parent=Msa0721970-mRNA-1
chr5_1 CDS 19123654 19124663 19123654 ID=Msa0721970-mRNA-1:cds;Parent=Msa0721970-mRNA-1
chr5_1 CDS 19124812 19124883 19124812 ID=Msa0721970-mRNA-1:cds;Parent=Msa0721970-mRNA-1
chr5_1 three_prime_UTR 19124884 19125045 19124884 ID=Msa0721970-mRNA-1:three_prime_utr;Parent=Msa0721970-mRNA-1
Gene Sequence

>Msa0721970

ATGGAAAATAAACCCGAAACCGAACCTGGGTCTCGTTCAAACGACCATATGAACATGGAAAACATGAGCATTCAAGATTTGGTTTCAGTTCTGCGTACAGCGTTTCTGACAGAACAATTTGATACTGTTGAAGAAATTTTAGTGAGTAGATATGAGAAACTCCAAACAGAGAATCAACATCTTCAACAGAAGTTTCAATTTGAGGAAGAATTGAGGAAGAAAGAGGAAATGTGTGAGAGAGGGAAAAAAGCACAGAATAATTATGAAAAATTGTTGAAAGAAGTTAAGAAAACTAGTTTAGGGTTTAGAGAAACAATTGCTGAGTTAGAAAAGAAGAACAATGATTTGGAGTTGGAAGTTTCTGAGCTTAGAAAAAGAGTTGGTGTTTTGGAGAACAAGAAAAATGCATTTGGGGTGAAAATTAGTGAGTTGGAGGAATCAATGAAGAAGATTAGTGAGGCTAGGGTTGATGCTGGGATTACTGCTGTTGAAGAAAAAGAGATTGGGAATGAGATTGTGGAGGCTGCTCCTTTGCAAAGAATTGAACCTCCCATGAAAAGGAGGAAGGGTGATCAAGGTGCATCATTAGAAGAGAGCTCACAAGTGGAGAACAATGGCTATGGTACACCTAACATGGGATGTGTACATTTGTTGGTGCATTTTGATGGAGAAAGAAGTACACTTTTGTTGAAAGTTGATCCTGATCGGTACTCCTATTTGGATTTGGTTGATGACATTAGTGGATTGGCTATCAATAATGGACTCAATAATGGAGGTTTGTCTTTTGCCATTTCTTTCTGTCATCCCACTAGTAAGTCAACAATTCACATCAAAACCGATAGTCATGTTCTTGAGATGTTCAAGCTTTATAACATGTGTAGTTGTATCCATGTTTATACAACATTACTTAATCACGAGGGTGATGAAGTTGTTAGTCAAGTCCCTGATATTATACTTAGTGAGTTTGATGATGAATGGAGAGTGAGTGGTGAGCCTCCTCAAAATGAAAGTGATGAAATTCTCTCAGGTTCTAGTCACATAGATGAAGAAAAAAGGGATAATGAGATTAACATTGATGAGCATGGTGATTATGAAGAAAAACATGATCTTATTGCCTCTGAAAATTCTGCCGAAGTTAAAGTGTCAATTTATCCTAATAGAGGTATCAAAGGAAAAATATCTGCTCATGAATTTGAAGGGAAAGTGAAACTAGAAGTTGGTCTATTGTTTGGTGATGTGAATGAGTTTAGAACTGCTCTTAGAGATTTTGTTATACAAGAGGGGTTTGAGATTAAGAGGATAAAAAACGAAAAGGCAAGAGTAACTGCTAGATGTGCTGCAGATGGTTGTTGTTGGCGTATTCATGCATCTCCTGCACCAGATGGGATAACATATAAGATTAAGTCATACAACCCAGGTCATTCTTGTACACGAACAACAAAGAACTCAAATGCCACATCTACTTGGATTGCAAGGAAGTTAGAAAGCAAGTTAAAGGCTGATCCAAATATGAGTTATGCGGGTATGAAACAAGAGCTGTTGGATAACTATGGCATAGAACCAAGTAATGTAGGTCAACTTTATCGTGCAAGAAAAAAGAAAAAGCTAAACGTGCGACGTGGCTCGGATGGGAATGCAGCTTGTTCTAGACAAGTCACTCAAAGTATATAG

Protein sequence

>Msa0721970

MENKPETEPGSRSNDHMNMENMSIQDLVSVLRTAFLTEQFDTVEEILVSRYEKLQTENQHLQQKFQFEEELRKKEEMCERGKKAQNNYEKLLKEVKKTSLGFRETIAELEKKNNDLELEVSELRKRVGVLENKKNAFGVKISELEESMKKISEARVDAGITAVEEKEIGNEIVEAAPLQRIEPPMKRRKGDQGASLEESSQVENNGYGTPNMGCVHLLVHFDGERSTLLLKVDPDRYSYLDLVDDISGLAINNGLNNGGLSFAISFCHPTSKSTIHIKTDSHVLEMFKLYNMCSCIHVYTTLLNHEGDEVVSQVPDIILSEFDDEWRVSGEPPQNESDEILSGSSHIDEEKRDNEINIDEHGDYEEKHDLIASENSAEVKVSIYPNRGIKGKISAHEFEGKVKLEVGLLFGDVNEFRTALRDFVIQEGFEIKRIKNEKARVTARCAADGCCWRIHASPAPDGITYKIKSYNPGHSCTRTTKNSNATSTWIARKLESKLKADPNMSYAGMKQELLDNYGIEPSNVGQLYRARKKKKLNVRRGSDGNAACSRQVTQSI*