AlfalfaGEDB | Msa0000550

M. sativa cultivar zhongmu-4 / Msa0000550

KEGG: K17972
GO: GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000550	XP_003626547.1	98.851	174	2	0	1	174	1	174	2.78e-127	364

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000550	sp\|Q8LGI8\|NAA20_ARATH	92.529	174	13	0	1	174	1	174	1.72e-123	347

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000550	G7L415	98.851	174	2	0	1	174	1	174	1.33e-127	364

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TFs/TRs:

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Gene ID	Type	Classification
Msa0000550	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0001790	-0.811072	8.406755e-51	-8.615850e-47
Msa0000550	Msa0004880	-0.806456	8.154110e-50	-8.615850e-47
Msa0000550	Msa0006110	-0.818418	1.980911e-52	-8.615850e-47
Msa0000550	Msa0007080	-0.811634	6.345610e-51	-8.615850e-47
Msa0000550	Msa0011170	-0.810179	1.310853e-50	-8.615850e-47
Msa0000550	Msa0011720	-0.812692	3.730370e-51	-8.615850e-47
Msa0000550	Msa0012060	-0.803413	3.528202e-49	-8.615850e-47
Msa0000550	Msa0014710	-0.807023	6.190069e-50	-8.615850e-47
Msa0000550	Msa0015120	-0.802856	4.599898e-49	-8.615850e-47
Msa0000550	Msa0017510	-0.857941	1.158181e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000550	MtrunA17_Chr7g0275421	98.649	148	2	0	27	174	12	159	1.29e-109	309
Msa0000550	MtrunA17_Chr3g0090311	35.762	151	96	1	1	150	1	151	2.68e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000550	AT1G03150.1	92.529	174	13	0	1	174	1	174	1.75e-124	347
Msa0000550	AT5G13780.1	36.424	151	95	1	1	150	1	151	1.29e-27	102

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Find 63 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAACCAAGTAACCAT+AGG	0.556472	1_1:+1703560	None:intergenic
AAACCAACCAAGTAACCATA+GGG	0.606037	1_1:+1703561	None:intergenic
AAATGAGTTTCATTAATAGT+AGG	0.404332	1_1:+1703659	None:intergenic
AACCCATGATATGGTTACCG+GGG	0.702997	1_1:+1706071	None:intergenic
AACTGACCAATCGAGACAGA+CGG	0.633041	1_1:+1706419	None:intergenic
AAGCCCTATGGTTACTTGGT+TGG	0.479678	1_1:-1703564	Msa0000550:three_prime_UTR
AAGTAAGCCCTATGGTTACT+TGG	0.466347	1_1:-1703568	Msa0000550:three_prime_UTR
AATAGTCGGGCCATCGTGCT+AGG	0.528873	1_1:+1706110	None:intergenic
AATTGTTGCCTGCGATACTC+GGG	0.536449	1_1:+1705901	None:intergenic
ACATGACCTACCTAGCACGA+TGG	0.757874	1_1:-1706120	Msa0000550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCAAAACAAATCAGATCAA+GGG	+	chr1_1:1703694-1703713	None:intergenic	30.0%
TCTCAAAACAAATCAGATCA+AGG	+	chr1_1:1703695-1703714	None:intergenic	30.0%
TGACATTTGTAAAACGAAGA+AGG	+	chr1_1:1703794-1703813	None:intergenic	30.0%
ACAAACAACATTAAGAACGA+AGG	+	chr1_1:1703884-1703903	None:intergenic	30.0%
TAATCGAGAGAGAAAAAAAG+GGG	+	chr1_1:1704020-1704039	None:intergenic	30.0%
AGCCATCAAAATGTATGAAA+AGG	-	chr1_1:1704340-1704359	Msa0000550:intron	30.0%
ACATACAGAATCATCAAGTA+GGG	-	chr1_1:1704416-1704435	Msa0000550:intron	30.0%
TAAGAATTAGCATGAAGATG+AGG	+	chr1_1:1704447-1704466	None:intergenic	30.0%
TACCAGTTAGAGAAGAAAAA+AGG	-	chr1_1:1704482-1704501	Msa0000550:intron	30.0%
AAAATAGAGTTCTTTCATGG+TGG	+	chr1_1:1704638-1704657	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	1703466	1706601	1703466	ID=Msa0000550;Name=Msa0000550
chr1_1	mRNA	1703466	1706601	1703466	ID=Msa0000550-mRNA-1;Parent=Msa0000550;Name=Msa0000550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=198\|1\|1\|1\|0.83\|0.85\|7\|325\|174
chr1_1	exon	1703466	1703882	1703466	ID=Msa0000550-mRNA-1:exon:347;Parent=Msa0000550-mRNA-1
chr1_1	exon	1703983	1704043	1703983	ID=Msa0000550-mRNA-1:exon:346;Parent=Msa0000550-mRNA-1
chr1_1	exon	1705706	1705775	1705706	ID=Msa0000550-mRNA-1:exon:345;Parent=Msa0000550-mRNA-1
chr1_1	exon	1705856	1705988	1705856	ID=Msa0000550-mRNA-1:exon:344;Parent=Msa0000550-mRNA-1
chr1_1	exon	1706068	1706158	1706068	ID=Msa0000550-mRNA-1:exon:343;Parent=Msa0000550-mRNA-1
chr1_1	exon	1706231	1706330	1706231	ID=Msa0000550-mRNA-1:exon:342;Parent=Msa0000550-mRNA-1
chr1_1	exon	1706426	1706601	1706426	ID=Msa0000550-mRNA-1:exon:341;Parent=Msa0000550-mRNA-1
chr1_1	five_prime_UTR	1706426	1706601	1706426	ID=Msa0000550-mRNA-1:five_prime_utr;Parent=Msa0000550-mRNA-1
chr1_1	five_prime_UTR	1706309	1706330	1706309	ID=Msa0000550-mRNA-1:five_prime_utr;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1706231	1706308	1706231	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1706068	1706158	1706068	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1705856	1705988	1705856	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1705706	1705775	1705706	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1703983	1704043	1703983	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	CDS	1703791	1703882	1703791	ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1	three_prime_UTR	1703466	1703790	1703466	ID=Msa0000550-mRNA-1:three_prime_utr;Parent=Msa0000550-mRNA-1

Gene Sequence

>Msa0000550

ATGACAACAATACGTAGGTTTTGCTGCAACGACCTTCTTCGTTTTACAAATGTCAATCTTGACCATCTCACTGAAACTTTTAACATGTCCTTCTACATGACCTACCTAGCACGATGGCCCGACTATTTCCACCTCGCCCAAGGCCCCGGTAACCATATCATGGGTTACATTATGGGTAAAGTTGAGGGGCAAGGAGAATCTTGGCATGGTCATGTTACTGCAGTAACTGTTGCTCCCGAGTATCGCAGGCAACAATTAGCCAAGAAACTAATGAATCTTCTCGAAGACATCAGTGACAACATTGACAAAGCCTATTTTGTTGATCTATTTGTGAGAGCATCAAATGCACCAGCCATCAAAATGTATGAAAAGCTTGGCTATGTGATTTATCGACGAGTGCTACGCTATTATTCTGGGGAAGAAGATGGATTGGATATGAGAAAGGCATTATCTCGTGATATTGATAAGAAGTCCGTCATCCCTCTTAAACGACCTGTCACTCCTGATGAGTTAGAGTACGACTAA

Protein sequence

>Msa0000550

MTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHLAQGPGNHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDIDKKSVIPLKRPVTPDELEYD*