AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000550 MtrunA17_Chr7g0275421 98.649 148 2 0 27 174 12 159 1.29e-109 309
Msa0000550 MtrunA17_Chr3g0090311 35.762 151 96 1 1 150 1 151 2.68e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000550 AT1G03150.1 92.529 174 13 0 1 174 1 174 1.75e-124 347
Msa0000550 AT5G13780.1 36.424 151 95 1 1 150 1 151 1.29e-27 102

Find 63 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCAATATATTTGCTTTA+AGG 0.097026 1_1:+1703704 None:intergenic
GAGAAGATTCATTAGTTTCT+TGG 0.211108 1_1:+1705876 None:intergenic
CGAGTGCTACGCTATTATTC+TGG 0.267608 1_1:-1704000 Msa0000550:CDS
TGATATGGTTACCGGGGCCT+TGG 0.305955 1_1:+1706077 None:intergenic
CACAAATAGATCAACAAAAT+AGG 0.329063 1_1:+1705745 None:intergenic
ACTTACTGTAACCCATGATA+TGG 0.371450 1_1:+1706062 None:intergenic
TAATTGTTGCCTGCGATACT+CGG 0.380713 1_1:+1705900 None:intergenic
TAGCTCCGGCGAAGATGTTA+TGG 0.402930 1_1:+1706452 None:intergenic
AAATGAGTTTCATTAATAGT+AGG 0.404332 1_1:+1703659 None:intergenic
GTAACCCATGATATGGTTAC+CGG 0.405860 1_1:+1706069 None:intergenic
TTCTGGGGAAGAAGATGGAT+TGG 0.420903 1_1:-1703983 Msa0000550:CDS
GATATGGTTACCGGGGCCTT+GGG 0.427052 1_1:+1706078 None:intergenic
GGTTACCGGGGCCTTGGGCG+AGG 0.434572 1_1:+1706083 None:intergenic
ATAGCAAGACGACTTCCAAC+AGG 0.454596 1_1:+1703618 None:intergenic
AAGTAAGCCCTATGGTTACT+TGG 0.466347 1_1:-1703568 Msa0000550:three_prime_UTR
TAGTCGTACTCTAACTCATC+AGG 0.466585 1_1:+1703792 None:intergenic
GAGTGCTACGCTATTATTCT+GGG 0.472245 1_1:-1703999 Msa0000550:CDS
TTGGGCGAGGTGGAAATAGT+CGG 0.473599 1_1:+1706096 None:intergenic
TCTGGGGAAGAAGATGGATT+GGG 0.475034 1_1:-1703982 Msa0000550:intron
AGCCATCAAAATGTATGAAA+AGG 0.478370 1_1:-1705705 Msa0000550:intron
AAGCCCTATGGTTACTTGGT+TGG 0.479678 1_1:-1703564 Msa0000550:three_prime_UTR
GTAGTTATGGGTAAAGTTGA+GGG 0.481119 1_1:-1705970 Msa0000550:intron
AGGCCCCGGTAACCATATCA+TGG 0.483412 1_1:-1706074 Msa0000550:CDS
GCCTCTCCGTCTGTCTCGAT+TGG 0.485805 1_1:-1706425 Msa0000550:intron
TTCCACCTCGCCCAAGGCCC+CGG 0.488885 1_1:-1706088 Msa0000550:CDS
TATTATTCTGGGGAAGAAGA+TGG 0.493124 1_1:-1703988 Msa0000550:CDS
GACTATTTCCACCTCGCCCA+AGG 0.493150 1_1:-1706094 Msa0000550:CDS
GGAGTGACAGGTCGTTTAAG+AGG 0.494138 1_1:+1703813 None:intergenic
TTGAGGGGCAAGGAGAATCT+TGG 0.494281 1_1:-1705954 Msa0000550:CDS
ACGGAGAGGCGAAGTAGCTC+CGG 0.494438 1_1:+1706438 None:intergenic
TGCTAGGTAGGTCATGTAGA+AGG 0.496038 1_1:+1706126 None:intergenic
TGACATTTGTAAAACGAAGA+AGG 0.498914 1_1:+1706254 None:intergenic
TGGGCGAGGTGGAAATAGTC+GGG 0.499600 1_1:+1706097 None:intergenic
TGTAGTTATGGGTAAAGTTG+AGG 0.505774 1_1:-1705971 Msa0000550:intron
TACCGGGGCCTTGGGCGAGG+TGG 0.518879 1_1:+1706086 None:intergenic
CTGTTGCTCCCGAGTATCGC+AGG 0.521448 1_1:-1705909 Msa0000550:CDS
TACATACAGTTTCAGTGAGA+TGG 0.523499 1_1:+1706224 None:intergenic
AATAGTCGGGCCATCGTGCT+AGG 0.528873 1_1:+1706110 None:intergenic
ATGGGTAAAGTTGAGGGGCA+AGG 0.534565 1_1:-1705964 Msa0000550:CDS
AATTGTTGCCTGCGATACTC+GGG 0.536449 1_1:+1705901 None:intergenic
TCTAACTCATCAGGAGTGAC+AGG 0.539202 1_1:+1703801 None:intergenic
ATTTAAAGTAGTGTCCCTGT+TGG 0.546190 1_1:-1703633 Msa0000550:three_prime_UTR
AAAACCAACCAAGTAACCAT+AGG 0.556472 1_1:+1703560 None:intergenic
TAACCCATGATATGGTTACC+GGG 0.568371 1_1:+1706070 None:intergenic
ACGTTTAGAAGTAAGCCCTA+TGG 0.573706 1_1:-1703576 Msa0000550:three_prime_UTR
GCCTTCCATAACATCTTCGC+CGG 0.581124 1_1:-1706457 Msa0000550:five_prime_UTR
GAGTGACAGGTCGTTTAAGA+GGG 0.595531 1_1:+1703814 None:intergenic
TTGCAACTATATGTTGCATG+AGG 0.599021 1_1:-1703737 Msa0000550:three_prime_UTR
GGCCCCGGTAACCATATCAT+GGG 0.604498 1_1:-1706073 Msa0000550:CDS
AAACCAACCAAGTAACCATA+GGG 0.606037 1_1:+1703561 None:intergenic
AGGTCGTTTAAGAGGGATGA+CGG 0.617126 1_1:+1703821 None:intergenic
AACTGACCAATCGAGACAGA+CGG 0.633041 1_1:+1706419 None:intergenic
TCCGGCGAAGATGTTATGGA+AGG 0.639553 1_1:+1706456 None:intergenic
TAGTTATGGGTAAAGTTGAG+GGG 0.650869 1_1:-1705969 Msa0000550:CDS
GGGCAAGGAGAATCTTGGCA+TGG 0.658826 1_1:-1705949 Msa0000550:CDS
GTCGGGCCATCGTGCTAGGT+AGG 0.658913 1_1:+1706114 None:intergenic
TGAAGATGACAACAATACGT+AGG 0.673340 1_1:-1706291 Msa0000550:exon
TAGCAAGACGACTTCCAACA+GGG 0.673413 1_1:+1703619 None:intergenic
ACCAATCGAGACAGACGGAG+AGG 0.676694 1_1:+1706424 None:intergenic
AACCCATGATATGGTTACCG+GGG 0.702997 1_1:+1706071 None:intergenic
AGTGCTACGCTATTATTCTG+GGG 0.705031 1_1:-1703998 Msa0000550:CDS
TGAGAGACATGCACCTACGT+TGG 0.706614 1_1:+1703528 None:intergenic
ACATGACCTACCTAGCACGA+TGG 0.757874 1_1:-1706120 Msa0000550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTAATCTTTTAGAAT+TGG - chr1_1:1704235-1704254 Msa0000550:intron 15.0%
!! TACAACTTTATAAGTTAAAA+CGG + chr1_1:1705613-1705632 None:intergenic 15.0%
!! TTAACTTATAAAGTTGTAAT+TGG - chr1_1:1705615-1705634 Msa0000550:intron 15.0%
!! TAATCAATATATTTGCTTTA+AGG + chr1_1:1706344-1706363 None:intergenic 15.0%
!!! ATTTGTTTGTTTGAAATTGA+AGG - chr1_1:1703715-1703734 Msa0000550:three_prime_UTR 20.0%
!! TCATTAATGTAATGTAGTTA+TGG - chr1_1:1704062-1704081 Msa0000550:intron 20.0%
!! CATTAATGTAATGTAGTTAT+GGG - chr1_1:1704063-1704082 Msa0000550:intron 20.0%
!!! TTTTAATCTTTTAGAATTGG+AGG - chr1_1:1704238-1704257 Msa0000550:intron 20.0%
!! GCTAAAAAGTGAAATAAATT+GGG + chr1_1:1704861-1704880 None:intergenic 20.0%
!! AGCTAAAAAGTGAAATAAAT+TGG + chr1_1:1704862-1704881 None:intergenic 20.0%
!!! TTTCATATTCAGATTTTGTT+AGG + chr1_1:1705371-1705390 None:intergenic 20.0%
!! AAATCAAACCTATGTTTAAT+AGG + chr1_1:1705471-1705490 None:intergenic 20.0%
!!! AAAACAAAATTTTCAGATTG+TGG - chr1_1:1705712-1705731 Msa0000550:CDS 20.0%
!!! TATGTTTTCTTCATTAGATT+AGG - chr1_1:1705943-1705962 Msa0000550:CDS 20.0%
!! ATGAAGTAAAAACAAAAACA+TGG + chr1_1:1706096-1706115 None:intergenic 20.0%
!! TTCTCATATCTGAAAATAAA+GGG + chr1_1:1706174-1706193 None:intergenic 20.0%
!! TTTCTCATATCTGAAAATAA+AGG + chr1_1:1706175-1706194 None:intergenic 20.0%
!!! TTTATTTTCAGATATGAGAA+AGG - chr1_1:1706174-1706193 Msa0000550:intron 20.0%
!! AAATGAGTTTCATTAATAGT+AGG + chr1_1:1706389-1706408 None:intergenic 20.0%
!! ACTTTGTTACAAAAAAACTT+AGG + chr1_1:1706579-1706598 None:intergenic 20.0%
!!! TAATGAAGCTTTAGTTTTCT+TGG + chr1_1:1703479-1703498 None:intergenic 25.0%
! ATAATCGAGAGAGAAAAAAA+GGG + chr1_1:1704021-1704040 None:intergenic 25.0%
! TATAATCGAGAGAGAAAAAA+AGG + chr1_1:1704022-1704041 None:intergenic 25.0%
! AAATGAAAGAAAGATATGCA+AGG + chr1_1:1704220-1704239 None:intergenic 25.0%
! GTCTTGATATAAGTTAGAAT+TGG - chr1_1:1704260-1704279 Msa0000550:intron 25.0%
! CACAAATAGATCAACAAAAT+AGG + chr1_1:1704303-1704322 None:intergenic 25.0%
!! TACCTTTTCATACATTTTGA+TGG + chr1_1:1704345-1704364 None:intergenic 25.0%
! TTGAAAATAGAGTTCTTTCA+TGG + chr1_1:1704641-1704660 None:intergenic 25.0%
! ACATGTTGAAAAATCATAAG+TGG - chr1_1:1704672-1704691 Msa0000550:intron 25.0%
!! TAATGAGAAGTTAGATTTTG+TGG + chr1_1:1704712-1704731 None:intergenic 25.0%
! GTTGTATAAAGTACACAAAA+TGG + chr1_1:1704897-1704916 None:intergenic 25.0%
!!! TTGTAAAAGCACTAATAAGA+GGG + chr1_1:1705063-1705082 None:intergenic 25.0%
!!! ATTGTAAAAGCACTAATAAG+AGG + chr1_1:1705064-1705083 None:intergenic 25.0%
! GAAACATAATATGGAAAAGA+GGG + chr1_1:1705117-1705136 None:intergenic 25.0%
! AGAAACATAATATGGAAAAG+AGG + chr1_1:1705118-1705137 None:intergenic 25.0%
! CAGTACATAGAAACATAATA+TGG + chr1_1:1705126-1705145 None:intergenic 25.0%
! ACTTTACAAATAGCATCAAA+TGG - chr1_1:1705417-1705436 Msa0000550:intron 25.0%
!! AAATATTGTCTCAATGGATT+GGG - chr1_1:1705564-1705583 Msa0000550:intron 25.0%
!! TATAAAGTTGTAATTGGTTC+AGG - chr1_1:1705621-1705640 Msa0000550:intron 25.0%
!! ATTTTCAGATTGTGGTTTTT+TGG - chr1_1:1705720-1705739 Msa0000550:CDS 25.0%
! TATTATTATCCAACTGATGT+GGG + chr1_1:1705762-1705781 None:intergenic 25.0%
! TGTCATTGTAAATTGAATGT+TGG - chr1_1:1705913-1705932 Msa0000550:CDS 25.0%
! TGTAAATTGAATGTTGGATT+AGG - chr1_1:1705919-1705938 Msa0000550:CDS 25.0%
! AAAGAATTAGTTAGCAATTC+AGG + chr1_1:1705986-1706005 None:intergenic 25.0%
CTCAAAACAAATCAGATCAA+GGG + chr1_1:1703694-1703713 None:intergenic 30.0%
TCTCAAAACAAATCAGATCA+AGG + chr1_1:1703695-1703714 None:intergenic 30.0%
TGACATTTGTAAAACGAAGA+AGG + chr1_1:1703794-1703813 None:intergenic 30.0%
!! AATACCATTGAGTTGAGAAA+CGG + chr1_1:1703851-1703870 None:intergenic 30.0%
ACAAACAACATTAAGAACGA+AGG + chr1_1:1703884-1703903 None:intergenic 30.0%
TAATCGAGAGAGAAAAAAAG+GGG + chr1_1:1704020-1704039 None:intergenic 30.0%
! GAGAAGATTCATTAGTTTCT+TGG + chr1_1:1704172-1704191 None:intergenic 30.0%
!! TTTTCATACATTTTGATGGC+TGG + chr1_1:1704341-1704360 None:intergenic 30.0%
AGCCATCAAAATGTATGAAA+AGG - chr1_1:1704340-1704359 Msa0000550:intron 30.0%
ACATACAGAATCATCAAGTA+GGG - chr1_1:1704416-1704435 Msa0000550:intron 30.0%
TAAGAATTAGCATGAAGATG+AGG + chr1_1:1704447-1704466 None:intergenic 30.0%
TACCAGTTAGAGAAGAAAAA+AGG - chr1_1:1704482-1704501 Msa0000550:intron 30.0%
!!! TACCTTTTTTCTTCTCTAAC+TGG + chr1_1:1704487-1704506 None:intergenic 30.0%
AAAATAGAGTTCTTTCATGG+TGG + chr1_1:1704638-1704657 None:intergenic 30.0%
!! GATTTTTCAACATGTTAGCT+TGG + chr1_1:1704667-1704686 None:intergenic 30.0%
ATGCCTTCTGTTTAAAAACT+TGG - chr1_1:1704822-1704841 Msa0000550:intron 30.0%
TGCCTTCTGTTTAAAAACTT+GGG - chr1_1:1704823-1704842 Msa0000550:intron 30.0%
! TACCCAAGTTTTTAAACAGA+AGG + chr1_1:1704828-1704847 None:intergenic 30.0%
TTCTGTTTAAAAACTTGGGT+AGG - chr1_1:1704827-1704846 Msa0000550:intron 30.0%
!!! ACTTTTTAGCTTATTTCTGC+TGG - chr1_1:1704871-1704890 Msa0000550:intron 30.0%
CACTTAATGACTTTCTCAAT+GGG + chr1_1:1704957-1704976 None:intergenic 30.0%
TGTTATCTAAAAAACACCGT+AGG + chr1_1:1705003-1705022 None:intergenic 30.0%
!! AGATATGAATGAAAGCATTG+GGG + chr1_1:1705160-1705179 None:intergenic 30.0%
!! GAGATATGAATGAAAGCATT+GGG + chr1_1:1705161-1705180 None:intergenic 30.0%
! TGAGATATGAATGAAAGCAT+TGG + chr1_1:1705162-1705181 None:intergenic 30.0%
! TGCTATTTAAGCTTACTTTC+TGG - chr1_1:1705226-1705245 Msa0000550:intron 30.0%
TAGGATCAAAGCATAAAACA+CGG + chr1_1:1705452-1705471 None:intergenic 30.0%
GCTTTGATCCTATTAAACAT+AGG - chr1_1:1705460-1705479 Msa0000550:intron 30.0%
!! CTTCACTTTTCACAAGAAAT+CGG - chr1_1:1705508-1705527 Msa0000550:intron 30.0%
GAGATGAAATATTGTCTCAA+TGG - chr1_1:1705558-1705577 Msa0000550:intron 30.0%
GAAATATTGTCTCAATGGAT+TGG - chr1_1:1705563-1705582 Msa0000550:intron 30.0%
GTATTATTATCCAACTGATG+TGG + chr1_1:1705763-1705782 None:intergenic 30.0%
! AAGTCTGTGTCACTATTTAT+TGG - chr1_1:1706136-1706155 Msa0000550:CDS 30.0%
!! TTAGTTTTCTTGGTTGTGGT+CGG + chr1_1:1703469-1703488 None:intergenic 35.0%
!!! AGCTTTAGTTTTCTTGGTTG+TGG + chr1_1:1703473-1703492 None:intergenic 35.0%
GAAAGAGAAAGAGATTGAGA+GGG + chr1_1:1703655-1703674 None:intergenic 35.0%
TGAAAGAGAAAGAGATTGAG+AGG + chr1_1:1703656-1703675 None:intergenic 35.0%
TGAAGATGACAACAATACGT+AGG - chr1_1:1703754-1703773 Msa0000550:three_prime_UTR 35.0%
TACATACAGTTTCAGTGAGA+TGG + chr1_1:1703824-1703843 None:intergenic 35.0%
ACTTACTGTAACCCATGATA+TGG + chr1_1:1703986-1704005 None:intergenic 35.0%
TGTAGTTATGGGTAAAGTTG+AGG - chr1_1:1704074-1704093 Msa0000550:intron 35.0%
GTAGTTATGGGTAAAGTTGA+GGG - chr1_1:1704075-1704094 Msa0000550:intron 35.0%
TAGTTATGGGTAAAGTTGAG+GGG - chr1_1:1704076-1704095 Msa0000550:intron 35.0%
CATTTCAGATTCTGTCAGAA+AGG - chr1_1:1704381-1704400 Msa0000550:intron 35.0%
GACATACAGAATCATCAAGT+AGG - chr1_1:1704415-1704434 Msa0000550:intron 35.0%
CATACAGAATCATCAAGTAG+GGG - chr1_1:1704417-1704436 Msa0000550:intron 35.0%
ATACAGAATCATCAAGTAGG+GGG - chr1_1:1704418-1704437 Msa0000550:intron 35.0%
TGAGAGGAATCTCAATCAAA+CGG - chr1_1:1704559-1704578 Msa0000550:intron 35.0%
ATGACTTTCTCAATGGGATA+AGG + chr1_1:1704951-1704970 None:intergenic 35.0%
GCACTTAATGACTTTCTCAA+TGG + chr1_1:1704958-1704977 None:intergenic 35.0%
AGCACTAATAAGAGGGTAAA+AGG + chr1_1:1705056-1705075 None:intergenic 35.0%
CGATTTCTTGTGAAAAGTGA+AGG + chr1_1:1705510-1705529 None:intergenic 35.0%
! TGTAATTGGTTCAGGTGATT+TGG - chr1_1:1705629-1705648 Msa0000550:intron 35.0%
! TGGTCTGATTTTGCAAACAA+CGG - chr1_1:1705687-1705706 Msa0000550:intron 35.0%
TCCTATTTGACATCTTAGCT+TGG - chr1_1:1706006-1706025 Msa0000550:intron 35.0%
! TATTATTCTGGGGAAGAAGA+TGG - chr1_1:1706057-1706076 Msa0000550:intron 35.0%
TTGCAACTATATGTTGCATG+AGG - chr1_1:1706308-1706327 Msa0000550:exon 35.0%
! ATTTAAAGTAGTGTCCCTGT+TGG - chr1_1:1706412-1706431 Msa0000550:intron 35.0%
AAACCAACCAAGTAACCATA+GGG + chr1_1:1706487-1706506 None:intergenic 35.0%
AAAACCAACCAAGTAACCAT+AGG + chr1_1:1706488-1706507 None:intergenic 35.0%
ACTACCGTTTCTCAACTCAA+TGG - chr1_1:1703844-1703863 Msa0000550:CDS 40.0%
TAACCCATGATATGGTTACC+GGG + chr1_1:1703978-1703997 None:intergenic 40.0%
GTAACCCATGATATGGTTAC+CGG + chr1_1:1703979-1703998 None:intergenic 40.0%
TAATTGTTGCCTGCGATACT+CGG + chr1_1:1704148-1704167 None:intergenic 40.0%
GTTATCTCGATTGCATTGAG+AGG - chr1_1:1704543-1704562 Msa0000550:intron 40.0%
GAGAGGAATCTCAATCAAAC+GGG - chr1_1:1704560-1704579 Msa0000550:intron 40.0%
GGTTGTAGTGTTCTACTTCA+TGG - chr1_1:1704581-1704600 Msa0000550:intron 40.0%
! TAGAGTTCTTTCATGGTGGA+GGG + chr1_1:1704634-1704653 None:intergenic 40.0%
ATAGAGTTCTTTCATGGTGG+AGG + chr1_1:1704635-1704654 None:intergenic 40.0%
TTTCTCAATGGGATAAGGCT+TGG + chr1_1:1704946-1704965 None:intergenic 40.0%
! ACAAACAAAGCCTTGTCCTA+CGG - chr1_1:1704984-1705003 Msa0000550:intron 40.0%
CTAAAAAACACCGTAGGACA+AGG + chr1_1:1704997-1705016 None:intergenic 40.0%
!! AAAGCATTGGGGACATAGTT+GGG + chr1_1:1705149-1705168 None:intergenic 40.0%
! AAGCCTTATCTGACTAAGTG+GGG + chr1_1:1705315-1705334 None:intergenic 40.0%
! CAAGCCTTATCTGACTAAGT+GGG + chr1_1:1705316-1705335 None:intergenic 40.0%
! TCAAGCCTTATCTGACTAAG+TGG + chr1_1:1705317-1705336 None:intergenic 40.0%
CTTAGTCAGATAAGGCTTGA+TGG - chr1_1:1705317-1705336 Msa0000550:intron 40.0%
TTACTTTGTCCCACATCAGT+TGG - chr1_1:1705750-1705769 Msa0000550:CDS 40.0%
GCCAAGCTAAGATGTCAAAT+AGG + chr1_1:1706010-1706029 None:intergenic 40.0%
GAGTGCTACGCTATTATTCT+GGG - chr1_1:1706046-1706065 Msa0000550:intron 40.0%
AGTGCTACGCTATTATTCTG+GGG - chr1_1:1706047-1706066 Msa0000550:intron 40.0%
TAGTCGTACTCTAACTCATC+AGG + chr1_1:1706256-1706275 None:intergenic 40.0%
ACGTTTAGAAGTAAGCCCTA+TGG - chr1_1:1706469-1706488 Msa0000550:five_prime_UTR 40.0%
AAGTAAGCCCTATGGTTACT+TGG - chr1_1:1706477-1706496 Msa0000550:five_prime_UTR 40.0%
!!! TTACTTGGTTGGTTTTGAGC+AGG - chr1_1:1706492-1706511 Msa0000550:five_prime_UTR 40.0%
!!! TACTTGGTTGGTTTTGAGCA+GGG - chr1_1:1706493-1706512 Msa0000550:five_prime_UTR 40.0%
AACTGACCAATCGAGACAGA+CGG + chr1_1:1703629-1703648 None:intergenic 45.0%
TGCTAGGTAGGTCATGTAGA+AGG + chr1_1:1703922-1703941 None:intergenic 45.0%
AACCCATGATATGGTTACCG+GGG + chr1_1:1703977-1703996 None:intergenic 45.0%
AATTGTTGCCTGCGATACTC+GGG + chr1_1:1704147-1704166 None:intergenic 45.0%
!! GTAGGACAAGGCTTTGTTTG+TGG + chr1_1:1704985-1705004 None:intergenic 45.0%
!! GAAAGCATTGGGGACATAGT+TGG + chr1_1:1705150-1705169 None:intergenic 45.0%
! TGGCTAGTTCATGCGTAATC+TGG - chr1_1:1705649-1705668 Msa0000550:intron 45.0%
! CGTAATCTGGAATTGCAAGC+TGG - chr1_1:1705662-1705681 Msa0000550:intron 45.0%
! TCTGGAATTGCAAGCTGGTT+TGG - chr1_1:1705667-1705686 Msa0000550:intron 45.0%
CGAGTGCTACGCTATTATTC+TGG - chr1_1:1706045-1706064 Msa0000550:intron 45.0%
! TTCTGGGGAAGAAGATGGAT+TGG - chr1_1:1706062-1706081 Msa0000550:intron 45.0%
! TCTGGGGAAGAAGATGGATT+GGG - chr1_1:1706063-1706082 Msa0000550:intron 45.0%
!! GGAAGAAGATGGATTGGGTA+TGG - chr1_1:1706068-1706087 Msa0000550:CDS 45.0%
AGGTCGTTTAAGAGGGATGA+CGG + chr1_1:1706227-1706246 None:intergenic 45.0%
GAGTGACAGGTCGTTTAAGA+GGG + chr1_1:1706234-1706253 None:intergenic 45.0%
TCTAACTCATCAGGAGTGAC+AGG + chr1_1:1706247-1706266 None:intergenic 45.0%
TAGCAAGACGACTTCCAACA+GGG + chr1_1:1706429-1706448 None:intergenic 45.0%
ATAGCAAGACGACTTCCAAC+AGG + chr1_1:1706430-1706449 None:intergenic 45.0%
AAGCCCTATGGTTACTTGGT+TGG - chr1_1:1706481-1706500 Msa0000550:five_prime_UTR 45.0%
!!! ACTTGGTTGGTTTTGAGCAG+GGG - chr1_1:1706494-1706513 Msa0000550:five_prime_UTR 45.0%
!! ATAATAATACAATTAAATTA+TGG - chr1_1:1705773-1705792 Msa0000550:intron 5.0%
!! TAATAATACAATTAAATTAT+GGG - chr1_1:1705774-1705793 Msa0000550:intron 5.0%
!! TAATAATACAATTAAATTAA+GGG + chr1_1:1705840-1705859 None:intergenic 5.0%
!! TTAATAATACAATTAAATTA+AGG + chr1_1:1705841-1705860 None:intergenic 5.0%
!! TTAATTGTATTATTAAATTA+AGG - chr1_1:1705845-1705864 Msa0000550:intron 5.0%
!! TAATTGTATTATTAAATTAA+GGG - chr1_1:1705846-1705865 Msa0000550:intron 5.0%
GCCTTCCATAACATCTTCGC+CGG - chr1_1:1703588-1703607 Msa0000550:three_prime_UTR 50.0%
TCCGGCGAAGATGTTATGGA+AGG + chr1_1:1703592-1703611 None:intergenic 50.0%
TAGCTCCGGCGAAGATGTTA+TGG + chr1_1:1703596-1703615 None:intergenic 50.0%
ACATGACCTACCTAGCACGA+TGG - chr1_1:1703925-1703944 Msa0000550:intron 50.0%
TTGGGCGAGGTGGAAATAGT+CGG + chr1_1:1703952-1703971 None:intergenic 50.0%
ATGGGTAAAGTTGAGGGGCA+AGG - chr1_1:1704081-1704100 Msa0000550:intron 50.0%
TTGAGGGGCAAGGAGAATCT+TGG - chr1_1:1704091-1704110 Msa0000550:intron 50.0%
GAGGGTAACATCACAGGGAA+CGG + chr1_1:1704616-1704635 None:intergenic 50.0%
TGGTGGAGGGTAACATCACA+GGG + chr1_1:1704621-1704640 None:intergenic 50.0%
! ATGGTGGAGGGTAACATCAC+AGG + chr1_1:1704622-1704641 None:intergenic 50.0%
! ACCATACTCCAAGATGGTGG+TGG + chr1_1:1704762-1704781 None:intergenic 50.0%
GCTACCATACTCCAAGATGG+TGG + chr1_1:1704765-1704784 None:intergenic 50.0%
GCAGCTACCATACTCCAAGA+TGG + chr1_1:1704768-1704787 None:intergenic 50.0%
AGAGGGCAGAGTCTCAACTT+AGG + chr1_1:1705100-1705119 None:intergenic 50.0%
CGACCCCACTTAGTCAGATA+AGG - chr1_1:1705309-1705328 Msa0000550:intron 50.0%
GGAGTGACAGGTCGTTTAAG+AGG + chr1_1:1706235-1706254 None:intergenic 50.0%
TGAGAGACATGCACCTACGT+TGG + chr1_1:1706520-1706539 None:intergenic 50.0%
ACCAATCGAGACAGACGGAG+AGG + chr1_1:1703624-1703643 None:intergenic 55.0%
AATAGTCGGGCCATCGTGCT+AGG + chr1_1:1703938-1703957 None:intergenic 55.0%
TGGGCGAGGTGGAAATAGTC+GGG + chr1_1:1703951-1703970 None:intergenic 55.0%
GACTATTTCCACCTCGCCCA+AGG - chr1_1:1703951-1703970 Msa0000550:intron 55.0%
GATATGGTTACCGGGGCCTT+GGG + chr1_1:1703970-1703989 None:intergenic 55.0%
TGATATGGTTACCGGGGCCT+TGG + chr1_1:1703971-1703990 None:intergenic 55.0%
AGGCCCCGGTAACCATATCA+TGG - chr1_1:1703971-1703990 Msa0000550:intron 55.0%
GGCCCCGGTAACCATATCAT+GGG - chr1_1:1703972-1703991 Msa0000550:intron 55.0%
GGGCAAGGAGAATCTTGGCA+TGG - chr1_1:1704096-1704115 Msa0000550:intron 55.0%
GAGAACTGCCACCACCATCT+TGG - chr1_1:1704751-1704770 Msa0000550:intron 55.0%
GCCACCACCATCTTGGAGTA+TGG - chr1_1:1704758-1704777 Msa0000550:intron 55.0%
! TTTTGAGCAGGGGCCAACGT+AGG - chr1_1:1706504-1706523 Msa0000550:five_prime_UTR 55.0%
ACGGAGAGGCGAAGTAGCTC+CGG + chr1_1:1703610-1703629 None:intergenic 60.0%
GCCTCTCCGTCTGTCTCGAT+TGG - chr1_1:1703620-1703639 Msa0000550:three_prime_UTR 60.0%
! CTGTTGCTCCCGAGTATCGC+AGG - chr1_1:1704136-1704155 Msa0000550:intron 60.0%
GTCGGGCCATCGTGCTAGGT+AGG + chr1_1:1703934-1703953 None:intergenic 65.0%
TTCCACCTCGCCCAAGGCCC+CGG - chr1_1:1703957-1703976 Msa0000550:intron 70.0%
TACCGGGGCCTTGGGCGAGG+TGG + chr1_1:1703962-1703981 None:intergenic 75.0%
GGTTACCGGGGCCTTGGGCG+AGG + chr1_1:1703965-1703984 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1703466 1706601 1703466 ID=Msa0000550;Name=Msa0000550
chr1_1 mRNA 1703466 1706601 1703466 ID=Msa0000550-mRNA-1;Parent=Msa0000550;Name=Msa0000550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=198|1|1|1|0.83|0.85|7|325|174
chr1_1 exon 1703466 1703882 1703466 ID=Msa0000550-mRNA-1:exon:347;Parent=Msa0000550-mRNA-1
chr1_1 exon 1703983 1704043 1703983 ID=Msa0000550-mRNA-1:exon:346;Parent=Msa0000550-mRNA-1
chr1_1 exon 1705706 1705775 1705706 ID=Msa0000550-mRNA-1:exon:345;Parent=Msa0000550-mRNA-1
chr1_1 exon 1705856 1705988 1705856 ID=Msa0000550-mRNA-1:exon:344;Parent=Msa0000550-mRNA-1
chr1_1 exon 1706068 1706158 1706068 ID=Msa0000550-mRNA-1:exon:343;Parent=Msa0000550-mRNA-1
chr1_1 exon 1706231 1706330 1706231 ID=Msa0000550-mRNA-1:exon:342;Parent=Msa0000550-mRNA-1
chr1_1 exon 1706426 1706601 1706426 ID=Msa0000550-mRNA-1:exon:341;Parent=Msa0000550-mRNA-1
chr1_1 five_prime_UTR 1706426 1706601 1706426 ID=Msa0000550-mRNA-1:five_prime_utr;Parent=Msa0000550-mRNA-1
chr1_1 five_prime_UTR 1706309 1706330 1706309 ID=Msa0000550-mRNA-1:five_prime_utr;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1706231 1706308 1706231 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1706068 1706158 1706068 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1705856 1705988 1705856 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1705706 1705775 1705706 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1703983 1704043 1703983 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 CDS 1703791 1703882 1703791 ID=Msa0000550-mRNA-1:cds;Parent=Msa0000550-mRNA-1
chr1_1 three_prime_UTR 1703466 1703790 1703466 ID=Msa0000550-mRNA-1:three_prime_utr;Parent=Msa0000550-mRNA-1
Gene Sequence

>Msa0000550

ATGACAACAATACGTAGGTTTTGCTGCAACGACCTTCTTCGTTTTACAAATGTCAATCTTGACCATCTCACTGAAACTTTTAACATGTCCTTCTACATGACCTACCTAGCACGATGGCCCGACTATTTCCACCTCGCCCAAGGCCCCGGTAACCATATCATGGGTTACATTATGGGTAAAGTTGAGGGGCAAGGAGAATCTTGGCATGGTCATGTTACTGCAGTAACTGTTGCTCCCGAGTATCGCAGGCAACAATTAGCCAAGAAACTAATGAATCTTCTCGAAGACATCAGTGACAACATTGACAAAGCCTATTTTGTTGATCTATTTGTGAGAGCATCAAATGCACCAGCCATCAAAATGTATGAAAAGCTTGGCTATGTGATTTATCGACGAGTGCTACGCTATTATTCTGGGGAAGAAGATGGATTGGATATGAGAAAGGCATTATCTCGTGATATTGATAAGAAGTCCGTCATCCCTCTTAAACGACCTGTCACTCCTGATGAGTTAGAGTACGACTAA

Protein sequence

>Msa0000550

MTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHLAQGPGNHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDIDKKSVIPLKRPVTPDELEYD*