Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373460 | XP_003592787.1 | 98.324 | 716 | 12 | 0 | 1 | 716 | 203 | 918 | 0.0 | 1435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373460 | G7IF22 | 98.324 | 716 | 12 | 0 | 1 | 716 | 203 | 918 | 0.0 | 1435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1373460 | 0.820532 | 6.528240e-53 | -8.615850e-47 |
| Msa0081520 | Msa1373460 | 0.816019 | 6.859504e-52 | -8.615850e-47 |
| Msa1356830 | Msa1373460 | 0.812767 | 3.591896e-51 | -8.615850e-47 |
| Msa1373460 | Msa1374040 | 0.811737 | 6.027379e-51 | -8.615850e-47 |
| Msa1373460 | Msa1375560 | 0.813622 | 2.331907e-51 | -8.615850e-47 |
| Msa1373460 | Msa1383530 | 0.809505 | 1.830197e-50 | -8.615850e-47 |
| Msa1373460 | Msa1422580 | 0.814617 | 1.406490e-51 | -8.615850e-47 |
| Msa1373460 | Msa1437940 | 0.809588 | 1.757163e-50 | -8.615850e-47 |
| Msa1373460 | Msa1441580 | 0.802551 | 5.316417e-49 | -8.615850e-47 |
| Msa1373460 | Msa1451160 | 0.801292 | 9.647560e-49 | -8.615850e-47 |
| Msa1373460 | Msa1464810 | 0.800277 | 1.554300e-48 | -8.615850e-47 |
| Msa0627450 | Msa1373460 | 0.813804 | 2.125903e-51 | -8.615850e-47 |
| Msa0662340 | Msa1373460 | 0.810148 | 1.331050e-50 | -8.615850e-47 |
| Msa0667050 | Msa1373460 | 0.813979 | 1.946053e-51 | -8.615850e-47 |
| Msa0682330 | Msa1373460 | 0.804561 | 2.036525e-49 | -8.615850e-47 |
| Msa0683510 | Msa1373460 | 0.801941 | 7.100883e-49 | -8.615850e-47 |
| Msa0698640 | Msa1373460 | 0.800106 | 1.684149e-48 | -8.615850e-47 |
| Msa0724910 | Msa1373460 | 0.815414 | 9.358970e-52 | -8.615850e-47 |
| Msa0727710 | Msa1373460 | 0.807951 | 3.933060e-50 | -8.615850e-47 |
| Msa0737570 | Msa1373460 | 0.823373 | 1.434310e-53 | -8.615850e-47 |
| Msa0125880 | Msa1373460 | 0.803612 | 3.208022e-49 | -8.615850e-47 |
| Msa0142950 | Msa1373460 | 0.809030 | 2.314341e-50 | -8.615850e-47 |
| Msa0146260 | Msa1373460 | 0.809847 | 1.545371e-50 | -8.615850e-47 |
| Msa0170570 | Msa1373460 | 0.800858 | 1.183359e-48 | -8.615850e-47 |
| Msa0173890 | Msa1373460 | 0.821406 | 4.106469e-53 | -8.615850e-47 |
| Msa0195630 | Msa1373460 | 0.816474 | 5.428285e-52 | -8.615850e-47 |
| Msa0205010 | Msa1373460 | 0.804757 | 1.853080e-49 | -8.615850e-47 |
| Msa0237410 | Msa1373460 | 0.810811 | 9.574275e-51 | -8.615850e-47 |
| Msa1276660 | Msa1373460 | 0.807386 | 5.183981e-50 | -8.615850e-47 |
| Msa1295910 | Msa1373460 | 0.806607 | 7.579183e-50 | -8.615850e-47 |
| Msa1328640 | Msa1373460 | 0.804205 | 2.415300e-49 | -8.615850e-47 |
| Msa1328710 | Msa1373460 | 0.831560 | 1.557906e-55 | -8.615850e-47 |
| Msa0372810 | Msa1373460 | 0.804056 | 2.593830e-49 | -8.615850e-47 |
| Msa0378720 | Msa1373460 | 0.818864 | 1.568756e-52 | -8.615850e-47 |
| Msa0417880 | Msa1373460 | 0.822403 | 2.413444e-53 | -8.615850e-47 |
| Msa0423900 | Msa1373460 | 0.815104 | 1.096621e-51 | -8.615850e-47 |
| Msa0479170 | Msa1373460 | 0.837271 | 5.734057e-57 | -8.615850e-47 |
| Msa0479200 | Msa1373460 | 0.817873 | 2.631313e-52 | -8.615850e-47 |
| Msa1031930 | Msa1373460 | 0.803895 | 2.801587e-49 | -8.615850e-47 |
| Msa1034500 | Msa1373460 | 0.800149 | 1.649980e-48 | -8.615850e-47 |
| Msa1035960 | Msa1373460 | 0.818477 | 1.920439e-52 | -8.615850e-47 |
| Msa1041670 | Msa1373460 | 0.801183 | 1.015483e-48 | -8.615850e-47 |
| Msa1050910 | Msa1373460 | 0.804172 | 2.454538e-49 | -8.615850e-47 |
| Msa1051600 | Msa1373460 | 0.800543 | 1.371711e-48 | -8.615850e-47 |
| Msa1059960 | Msa1373460 | 0.811934 | 5.461501e-51 | -8.615850e-47 |
| Msa1068100 | Msa1373460 | 0.806226 | 9.117652e-50 | -8.615850e-47 |
| Msa1102770 | Msa1373460 | 0.834711 | 2.559031e-56 | -8.615850e-47 |
| Msa1105160 | Msa1373460 | 0.806096 | 9.711015e-50 | -8.615850e-47 |
| Msa0253290 | Msa1373460 | 0.805846 | 1.096055e-49 | -8.615850e-47 |
| Msa0259500 | Msa1373460 | 0.808764 | 2.638321e-50 | -8.615850e-47 |
| Msa0267920 | Msa1373460 | 0.803151 | 3.997822e-49 | -8.615850e-47 |
| Msa0283520 | Msa1373460 | 0.803785 | 2.952890e-49 | -8.615850e-47 |
| Msa0284410 | Msa1373460 | 0.803354 | 3.628094e-49 | -8.615850e-47 |
| Msa0292120 | Msa1373460 | 0.817239 | 3.656082e-52 | -8.615850e-47 |
| Msa0297790 | Msa1373460 | 0.811995 | 5.297335e-51 | -8.615850e-47 |
| Msa0305700 | Msa1373460 | 0.813639 | 2.312277e-51 | -8.615850e-47 |
| Msa0335800 | Msa1373460 | 0.812062 | 5.121626e-51 | -8.615850e-47 |
| Msa0341540 | Msa1373460 | 0.803525 | 3.344886e-49 | -8.615850e-47 |
| Msa1139890 | Msa1373460 | 0.805711 | 1.169731e-49 | -8.615850e-47 |
| Msa1145810 | Msa1373460 | 0.818552 | 1.846779e-52 | -8.615850e-47 |
| Msa1199570 | Msa1373460 | 0.828326 | 9.566776e-55 | -8.615850e-47 |
| Msa0488560 | Msa1373460 | 0.807863 | 4.106671e-50 | -8.615850e-47 |
| Msa0507680 | Msa1373460 | 0.803577 | 3.262922e-49 | -8.615850e-47 |
| Msa0557070 | Msa1373460 | 0.806183 | 9.307529e-50 | -8.615850e-47 |
| Msa0574390 | Msa1373460 | 0.815889 | 7.333449e-52 | -8.615850e-47 |
| Msa0856920 | Msa1373460 | 0.820358 | 7.153762e-53 | -8.615850e-47 |
| Msa0861510 | Msa1373460 | 0.800640 | 1.310604e-48 | -8.615850e-47 |
| Msa0866520 | Msa1373460 | 0.827432 | 1.569327e-54 | -8.615850e-47 |
| Msa0906690 | Msa1373460 | 0.801469 | 8.873396e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373460 | MtrunA17_Chr1g0213221 | 98.324 | 716 | 12 | 0 | 1 | 716 | 203 | 918 | 0.0 | 1435 |
| Msa1373460 | MtrunA17_Chr5g0422951 | 62.011 | 179 | 21 | 3 | 242 | 418 | 156 | 289 | 5.28e-52 | 186 |
| Msa1373460 | MtrunA17_Chr5g0422951 | 60.345 | 116 | 33 | 5 | 179 | 281 | 307 | 422 | 2.56e-25 | 109 |
| Msa1373460 | MtrunA17_Chr4g0002081 | 32.487 | 197 | 68 | 4 | 503 | 699 | 95 | 226 | 6.01e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373460 | AT3G55060.2 | 49.523 | 733 | 338 | 9 | 2 | 713 | 174 | 895 | 0.0 | 623 |
| Msa1373460 | AT3G55060.1 | 49.523 | 733 | 338 | 9 | 2 | 713 | 174 | 895 | 0.0 | 623 |
| Msa1373460 | AT3G55060.3 | 50.235 | 637 | 286 | 8 | 2 | 618 | 174 | 799 | 0.0 | 551 |
| Msa1373460 | AT2G39300.1 | 46.165 | 717 | 344 | 14 | 15 | 714 | 140 | 831 | 0.0 | 545 |
| Msa1373460 | AT2G39300.2 | 46.165 | 717 | 344 | 14 | 15 | 714 | 140 | 831 | 0.0 | 545 |
| Msa1373460 | AT2G39300.4 | 46.165 | 717 | 344 | 14 | 15 | 714 | 140 | 831 | 0.0 | 545 |
| Msa1373460 | AT2G39300.3 | 46.045 | 708 | 324 | 15 | 15 | 714 | 140 | 797 | 9.68e-180 | 533 |
Find 136 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAATTTGGGACCTTATA+TGG | 0.121815 | tig0019430:+180445 | None:intergenic |
| TATTCTTCTTTCAAAGAAAT+TGG | 0.188162 | tig0019430:-180591 | Msa1373460:CDS |
| CAGATGCTCTGTCAGCAATT+TGG | 0.216808 | tig0019430:+180433 | None:intergenic |
| ACTCCATTAGTTGGCGAATT+AGG | 0.227948 | tig0019430:+181008 | None:intergenic |
| TCCCTCTCCTCTGACACTTT+TGG | 0.259321 | tig0019430:+177642 | None:intergenic |
| ATACTTGTGTTCAAAGTTAC+TGG | 0.269237 | tig0019430:-179628 | Msa1373460:CDS |
| GACAAAAGACCCTGTCTCTA+TGG | 0.296604 | tig0019430:-177474 | Msa1373460:CDS |
| GAGCAAGAGAAGACAATAAT+AGG | 0.297652 | tig0019430:-179954 | Msa1373460:CDS |
| CCACAGACTGGTTCTTATTA+AGG | 0.299145 | tig0019430:+179890 | None:intergenic |
| AAACTTGTGATATTTCTAAA+AGG | 0.300185 | tig0019430:-180862 | Msa1373460:CDS |
| AGATGCTCTGTCAGCAATTT+GGG | 0.301976 | tig0019430:+180434 | None:intergenic |
| TATCCATTGGACATTCTATA+AGG | 0.326559 | tig0019430:+180699 | None:intergenic |
| TAGATATCTTCGATTGTGAT+TGG | 0.345214 | tig0019430:+180795 | None:intergenic |
| ACCTTCCTTAATGAGTATAT+CGG | 0.347951 | tig0019430:+177524 | None:intergenic |
| AAAGAGAATGGACAGATTAC+TGG | 0.352605 | tig0019430:-179597 | Msa1373460:CDS |
| AATGGACAGATTACTGGAAA+TGG | 0.353151 | tig0019430:-179591 | Msa1373460:CDS |
| ACCCATTGTCTGTCCAATCT+TGG | 0.354752 | tig0019430:+180922 | None:intergenic |
| GCAAGATAGCTGAAGAAAAC+AGG | 0.355535 | tig0019430:-180064 | Msa1373460:CDS |
| TGATACCGATATACTCATTA+AGG | 0.362914 | tig0019430:-177529 | Msa1373460:CDS |
| TTCGTTCCTCATCCCAAGAT+TGG | 0.366085 | tig0019430:-180952 | Msa1373460:CDS |
| GTTGAAGAACCTTGAACTTC+AGG | 0.369839 | tig0019430:-179038 | Msa1373460:intron |
| GATTCTGAAGGCAGCAGATC+CGG | 0.369921 | tig0019430:+179662 | None:intergenic |
| ACACCTAATTCGCCAACTAA+TGG | 0.392084 | tig0019430:-181028 | None:intergenic |
| AGCAATTTGGGACCTTATAT+GGG | 0.400673 | tig0019430:+180446 | None:intergenic |
| TGAGCTTAAAGCGGAACGTT+TGG | 0.402269 | tig0019430:-179209 | Msa1373460:CDS |
| GAATCTGAAACCAAAATTCA+TGG | 0.403955 | tig0019430:-179546 | Msa1373460:CDS |
| TAGAAGTTTCAACCCATATA+AGG | 0.404168 | tig0019430:-180475 | Msa1373460:CDS |
| GTCAGCATTGGAGAAGGAAT+TGG | 0.411500 | tig0019430:-180348 | Msa1373460:CDS |
| TGCCTTCATTTAGCATTGTT+AGG | 0.412345 | tig0019430:+179635 | None:intergenic |
| ATGACATGGACGGTAATTGC+AGG | 0.416460 | tig0019430:-180691 | Msa1373460:CDS |
| CCCATTGTCTGTCCAATCTT+GGG | 0.418832 | tig0019430:+180923 | None:intergenic |
| TCTGCATCAAGATCCTCTTC+AGG | 0.419732 | tig0019430:+180633 | None:intergenic |
| CTTTGCCATCACCTTTCAAC+CGG | 0.428446 | tig0019430:+179728 | None:intergenic |
| TGTTTCCCTCTCACTAAAAG+AGG | 0.433329 | tig0019430:+180191 | None:intergenic |
| ATCTGTCTTGTAGTTCTAAG+AGG | 0.437045 | tig0019430:+180070 | None:intergenic |
| CAGCTTGTATCTGCTCAACT+TGG | 0.443713 | tig0019430:+179146 | None:intergenic |
| CAGTATAAACTGCCTTCAAC+GGG | 0.453079 | tig0019430:-177712 | Msa1373460:CDS |
| AGAGGAGAGGGATAAGTTGT+GGG | 0.455210 | tig0019430:-177631 | Msa1373460:CDS |
| AAAATATAACTCTCTTAAAC+CGG | 0.459855 | tig0019430:-179764 | Msa1373460:CDS |
| CTGAACTTGCTACAGCAGTA+AGG | 0.462455 | tig0019430:-179126 | Msa1373460:CDS |
| CAGAGGAGAGGGATAAGTTG+TGG | 0.463545 | tig0019430:-177632 | Msa1373460:CDS |
| TACACAATTAAGTTCTTCCT+TGG | 0.477781 | tig0019430:+180410 | None:intergenic |
| ATCAGTCTTGAGAAGGGAGT+TGG | 0.478290 | tig0019430:-179823 | Msa1373460:CDS |
| ACTCTTGAAGATCCCGTTGA+AGG | 0.479489 | tig0019430:+177700 | None:intergenic |
| GATTGGACAGACAATGGGTA+TGG | 0.480642 | tig0019430:-180935 | Msa1373460:CDS |
| CTGGAACTCGTTAAAGAGAA+TGG | 0.481779 | tig0019430:-179609 | Msa1373460:CDS |
| TAAAGACAGAACTGGAGATT+CGG | 0.485183 | tig0019430:-180406 | Msa1373460:CDS |
| ATGGAGCTGATGAGGTTAAC+GGG | 0.488315 | tig0019430:-179852 | Msa1373460:CDS |
| ATTACTGGAAATGGGTTAGC+TGG | 0.492114 | tig0019430:-179582 | Msa1373460:CDS |
| CAATAATAGGATTACGAGAT+GGG | 0.492820 | tig0019430:-179941 | Msa1373460:CDS |
| GAAGCCTTTGCTCTTCTGAC+TGG | 0.492870 | tig0019430:+180268 | None:intergenic |
| GATGGAGCTGATGAGGTTAA+CGG | 0.493847 | tig0019430:-179853 | Msa1373460:CDS |
| ATGGACAGATTACTGGAAAT+GGG | 0.494521 | tig0019430:-179590 | Msa1373460:CDS |
| ATCTGCTGCCTTCAGAATCA+AGG | 0.494813 | tig0019430:-179675 | Msa1373460:CDS |
| GTCACGTCATAACCATAGTC+AGG | 0.494882 | tig0019430:+180534 | None:intergenic |
| AAAATTCATGGACTCAAAAG+TGG | 0.495733 | tig0019430:-179534 | Msa1373460:CDS |
| TCTCTAAATGAATGAGCCCT+AGG | 0.496289 | tig0019430:+180975 | None:intergenic |
| ATCAGGACTCCCATAGAGAC+AGG | 0.500593 | tig0019430:+177464 | None:intergenic |
| ATTCTGAAGGCAGCAGATCC+GGG | 0.503534 | tig0019430:+179663 | None:intergenic |
| CCCAAGATTGGACAGACAAT+GGG | 0.503599 | tig0019430:-180940 | Msa1373460:CDS |
| TCTCTTCAAAATTTCTTCGA+AGG | 0.505758 | tig0019430:+180019 | None:intergenic |
| GAATGAGATGCAGTCAGCAT+TGG | 0.506765 | tig0019430:-180360 | Msa1373460:CDS |
| TCTACCGAAAAGCTATTCAT+TGG | 0.507874 | tig0019430:-180744 | Msa1373460:CDS |
| GGTGACAGACCTGAAGTTCA+AGG | 0.510941 | tig0019430:+179029 | None:intergenic |
| CAAAGAAGTAAAAGAATACA+AGG | 0.511717 | tig0019430:-177307 | Msa1373460:three_prime_UTR |
| AAAATGAAAGGGGAGATTCT+GGG | 0.512767 | tig0019430:-180122 | Msa1373460:CDS |
| GTTGGAATCACACAAGTTTG+AGG | 0.515914 | tig0019430:-179805 | Msa1373460:CDS |
| GTCCATGTCATGATATCCAT+TGG | 0.516805 | tig0019430:+180686 | None:intergenic |
| GAAAGTGAAGCAAATTAGTG+AGG | 0.524313 | tig0019430:-177607 | Msa1373460:CDS |
| GGGATCTTCAAGAGTCTACA+AGG | 0.525019 | tig0019430:-177692 | Msa1373460:CDS |
| TTGTCTTTGACTCCATTAGT+TGG | 0.530813 | tig0019430:+180999 | None:intergenic |
| TGAACTTGCTACAGCAGTAA+GGG | 0.530850 | tig0019430:-179125 | Msa1373460:CDS |
| ATGGAGTCAAAGACAAACCT+AGG | 0.531447 | tig0019430:-181009 | Msa1373460:CDS |
| TATCAATGCTCTCCACAGAC+TGG | 0.533504 | tig0019430:+179878 | None:intergenic |
| GCCAAAAGTGTCAGAGGAGA+GGG | 0.535875 | tig0019430:-177643 | Msa1373460:CDS |
| ACAGTATAAACTGCCTTCAA+CGG | 0.536730 | tig0019430:-177713 | Msa1373460:CDS |
| ATCTATGCTAGATCATTGAA+TGG | 0.537882 | tig0019430:-180794 | Msa1373460:CDS |
| ACAAAAGACCCTGTCTCTAT+GGG | 0.538740 | tig0019430:-177473 | Msa1373460:CDS |
| AGCCGAGGAGAAAATAAGCT+TGG | 0.539237 | tig0019430:-180501 | Msa1373460:CDS |
| CTCAGAGATCGAAATGCTAA+AGG | 0.540448 | tig0019430:-177568 | Msa1373460:CDS |
| TCCCAAGATTGGACAGACAA+TGG | 0.540756 | tig0019430:-180941 | Msa1373460:CDS |
| GTCTGTCCAATCTTGGGATG+AGG | 0.541344 | tig0019430:+180929 | None:intergenic |
| ACAATAATAGGATTACGAGA+TGG | 0.545799 | tig0019430:-179942 | Msa1373460:CDS |
| GGCCTAACAATGCTAAATGA+AGG | 0.547042 | tig0019430:-179654 | Msa1373460:CDS |
| GCTCAAGGTGTTGACTAGTA+AGG | 0.548476 | tig0019430:-180150 | Msa1373460:CDS |
| AAGCTATGATGAACCTGAAG+AGG | 0.552604 | tig0019430:-180663 | Msa1373460:CDS |
| TAGTCAACACCTTGAGCTGT+TGG | 0.560938 | tig0019430:+180139 | None:intergenic |
| CATTGGAGAAGGAATTGGAC+AGG | 0.562593 | tig0019430:-180343 | Msa1373460:CDS |
| GGACTCAAAAGTGGAACTGA+GGG | 0.563611 | tig0019430:-179525 | Msa1373460:CDS |
| ACTCTCTTAAACCGGTTGAA+AGG | 0.563780 | tig0019430:-179756 | Msa1373460:CDS |
| TCAAATATCAATGTTGCAAG+AGG | 0.565983 | tig0019430:-177502 | Msa1373460:CDS |
| TAATTGTGTAAAGACAGAAC+TGG | 0.566498 | tig0019430:-180414 | Msa1373460:CDS |
| TTAAACCGGTTGAAAGGTGA+TGG | 0.567877 | tig0019430:-179750 | Msa1373460:CDS |
| GAATAGAATCAGTCTTGAGA+AGG | 0.568371 | tig0019430:-179830 | Msa1373460:CDS |
| ACTCGTGAGACGCAGTTGAA+AGG | 0.568903 | tig0019430:+179059 | None:intergenic |
| TTTAACAATTGAGCTTAAAG+CGG | 0.569523 | tig0019430:-179218 | Msa1373460:CDS |
| AAATGCAGATGGAGCTGATG+AGG | 0.574329 | tig0019430:-179860 | Msa1373460:CDS |
| AGAATTAATGAGAAGATCAA+AGG | 0.574358 | tig0019430:-180630 | Msa1373460:CDS |
| TGGACAGGAGGTCAAGTGAC+TGG | 0.574983 | tig0019430:-180328 | Msa1373460:CDS |
| GCACATCAAGAAAATGCAGA+TGG | 0.576565 | tig0019430:-179871 | Msa1373460:CDS |
| TAGACAAAGAACTATGCGCC+CGG | 0.586346 | tig0019430:-179698 | Msa1373460:CDS |
| ACATACTGACCAACAGCTCA+AGG | 0.587070 | tig0019430:-180165 | Msa1373460:CDS |
| TTGTTAGGCCTTGATTCTGA+AGG | 0.590931 | tig0019430:+179650 | None:intergenic |
| TGACATGGACGGTAATTGCA+GGG | 0.591350 | tig0019430:-180690 | Msa1373460:CDS |
| GAGAAGATCAAAGGAAGCTG+AGG | 0.593539 | tig0019430:-180621 | Msa1373460:CDS |
| TGCTGACAGAGCATCTGCCA+AGG | 0.599459 | tig0019430:-180444 | Msa1373460:CDS |
| ATTGAATAATCAATCGTCAG+AGG | 0.599707 | tig0019430:-179418 | Msa1373460:CDS |
| CACTCATATATGTGAATGAG+TGG | 0.600849 | tig0019430:-177397 | Msa1373460:three_prime_UTR |
| CAAGGGAGTTATCAATCATG+AGG | 0.603485 | tig0019430:-177674 | Msa1373460:CDS |
| ATTGGACAGACAATGGGTAT+GGG | 0.606897 | tig0019430:-180934 | Msa1373460:CDS |
| AGTACCAGTCAGAAGAGCAA+AGG | 0.608026 | tig0019430:-180289 | Msa1373460:CDS |
| GAACCTTATAGAATGTCCAA+TGG | 0.608161 | tig0019430:-180719 | Msa1373460:CDS |
| GATGCAGTCAGCATTGGAGA+AGG | 0.610943 | tig0019430:-180354 | Msa1373460:CDS |
| TGCCAAAAGTGTCAGAGGAG+AGG | 0.611276 | tig0019430:-177644 | Msa1373460:CDS |
| AAGGGAGTTATCAATCATGA+GGG | 0.619066 | tig0019430:-177673 | Msa1373460:CDS |
| CAAGATAGCTGAAGAAAACA+GGG | 0.623458 | tig0019430:-180063 | Msa1373460:CDS |
| ACCGATATACTCATTAAGGA+AGG | 0.625725 | tig0019430:-177525 | Msa1373460:CDS |
| AATGTTGCCAAAAGTGTCAG+AGG | 0.626739 | tig0019430:-177649 | Msa1373460:CDS |
| GTGGAACTGAGGGGTTAACA+AGG | 0.632898 | tig0019430:-179515 | Msa1373460:CDS |
| AATAGAATCAGTCTTGAGAA+GGG | 0.635360 | tig0019430:-179829 | Msa1373460:CDS |
| TGGACTCAAAAGTGGAACTG+AGG | 0.641479 | tig0019430:-179526 | Msa1373460:CDS |
| GACATGGACGGTAATTGCAG+GGG | 0.642445 | tig0019430:-180689 | Msa1373460:CDS |
| TGGAGTCAAAGACAAACCTA+GGG | 0.644740 | tig0019430:-181008 | Msa1373460:CDS |
| AAATGACATACTTAGATCTG+AGG | 0.646044 | tig0019430:-179101 | Msa1373460:CDS |
| CTTGGGATGAGGAACGAAGA+CGG | 0.646326 | tig0019430:+180940 | None:intergenic |
| GAACTTGCTACAGCAGTAAG+GGG | 0.648518 | tig0019430:-179124 | Msa1373460:CDS |
| AATGGATATCATGACATGGA+CGG | 0.648578 | tig0019430:-180701 | Msa1373460:CDS |
| GGAATCACACAAGTTTGAGG+AGG | 0.656353 | tig0019430:-179802 | Msa1373460:CDS |
| TGGAGAAGGAATTGGACAGG+AGG | 0.660839 | tig0019430:-180340 | Msa1373460:CDS |
| GTCCAATGGATATCATGACA+TGG | 0.663635 | tig0019430:-180705 | Msa1373460:CDS |
| CCTTAATAAGAACCAGTCTG+TGG | 0.672504 | tig0019430:-179907 | Msa1373460:CDS |
| GACAATCAGAAACCTAGCCG+AGG | 0.679751 | tig0019430:-180516 | Msa1373460:CDS |
| TCAGGACTCCCATAGAGACA+GGG | 0.708382 | tig0019430:+177465 | None:intergenic |
| GACTCAAAAGTGGAACTGAG+GGG | 0.714232 | tig0019430:-179524 | Msa1373460:CDS |
| AGGGAGTTATCAATCATGAG+GGG | 0.716877 | tig0019430:-177672 | Msa1373460:CDS |
| GGATCTTCAAGAGTCTACAA+GGG | 0.733654 | tig0019430:-177691 | Msa1373460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAATGATTTTAAAGAA+AGG | + | tig0019430:178983-179002 | None:intergenic | 10.0% |
| !! | ACTACAAAAAATAAAATTAT+GGG | + | tig0019430:180294-180313 | None:intergenic | 10.0% |
| !! | AACTACAAAAAATAAAATTA+TGG | + | tig0019430:180295-180314 | None:intergenic | 10.0% |
| !!! | TTTTCTTTAATTGAATTTTG+AGG | - | tig0019430:178917-178936 | Msa1373460:intron | 15.0% |
| !! | TAATCAATAAATTTCAATGT+TGG | + | tig0019430:179272-179291 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATTATGGGAT+TGG | + | tig0019430:180289-180308 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGTTTAATTTC+TGG | - | tig0019430:180302-180321 | Msa1373460:CDS | 15.0% |
| !!! | AAACTTGTGATATTTCTAAA+AGG | - | tig0019430:177432-177451 | Msa1373460:exon | 20.0% |
| !! | TATTCTTCTTTCAAAGAAAT+TGG | - | tig0019430:177703-177722 | Msa1373460:CDS | 20.0% |
| !!! | TTAAGAGAGTTATATTTTCT+TGG | + | tig0019430:178528-178547 | None:intergenic | 20.0% |
| !! | AAAATATAACTCTCTTAAAC+CGG | - | tig0019430:178530-178549 | Msa1373460:intron | 20.0% |
| !! | AGTAACAAAAGTTTGAATAT+GGG | + | tig0019430:179637-179656 | None:intergenic | 20.0% |
| !!! | TCAATTTCATTTAAGATTGT+TGG | - | tig0019430:179835-179854 | Msa1373460:CDS | 20.0% |
| !!! | ATTATGTTTTAGTGTTCTTT+AGG | + | tig0019430:179918-179937 | None:intergenic | 20.0% |
| !! | GATAATCTATGATCATTATT+TGG | + | tig0019430:180089-180108 | None:intergenic | 20.0% |
| !!! | TTTTTATTAGTTGTCTTTGT+GGG | - | tig0019430:180463-180482 | Msa1373460:CDS | 20.0% |
| !! | TATGAGAAAAAAATTGTATC+AGG | + | tig0019430:180833-180852 | None:intergenic | 20.0% |
| !!! | TGATACAATTTTTTTCTCAT+AGG | - | tig0019430:180832-180851 | Msa1373460:CDS | 20.0% |
| !!! | TTAGATTTTGTTTTTAGAGT+TGG | - | tig0019430:180919-180938 | Msa1373460:CDS | 20.0% |
| ! | AGAATTAATGAGAAGATCAA+AGG | - | tig0019430:177664-177683 | Msa1373460:CDS | 25.0% |
| ! | TTTAACAATTGAGCTTAAAG+CGG | - | tig0019430:179059-179078 | Msa1373460:CDS | 25.0% |
| !! | TTCCTATAAAAGTGCATATA+TGG | - | tig0019430:179334-179353 | Msa1373460:intron | 25.0% |
| !! | TCCTATAAAAGTGCATATAT+GGG | - | tig0019430:179335-179354 | Msa1373460:intron | 25.0% |
| ! | TTCATATATATCGAGACTTA+TGG | + | tig0019430:179387-179406 | None:intergenic | 25.0% |
| ! | TAGTATTTAAGTGCGAAAAT+GGG | + | tig0019430:179570-179589 | None:intergenic | 25.0% |
| ! | TTAGTATTTAAGTGCGAAAA+TGG | + | tig0019430:179571-179590 | None:intergenic | 25.0% |
| ! | TTTGAATATGGGTGAAAAAA+TGG | + | tig0019430:179626-179645 | None:intergenic | 25.0% |
| ! | CAGTAACAAAAGTTTGAATA+TGG | + | tig0019430:179638-179657 | None:intergenic | 25.0% |
| !!! | CTTATGTCCTATTTTTTTCA+AGG | - | tig0019430:179708-179727 | Msa1373460:CDS | 25.0% |
| ! | CATCATTCCTTGAAAAAAAT+AGG | + | tig0019430:179718-179737 | None:intergenic | 25.0% |
| ! | TTAGAATCTATGATGAGTAT+TGG | + | tig0019430:179749-179768 | None:intergenic | 25.0% |
| !!! | TAGTCGATCATTTTGTTTAT+TGG | + | tig0019430:179812-179831 | None:intergenic | 25.0% |
| !! | CCTGACATTAACTTTAATTT+AGG | + | tig0019430:179985-180004 | None:intergenic | 25.0% |
| ! | CCTAAATTAAAGTTAATGTC+AGG | - | tig0019430:179982-180001 | Msa1373460:CDS | 25.0% |
| !! | TTGAGATATGATTTAGAACT+AGG | - | tig0019430:180021-180040 | Msa1373460:CDS | 25.0% |
| !!! | GTAGTTTATTGACTCATAAA+AGG | + | tig0019430:180050-180069 | None:intergenic | 25.0% |
| ! | TTTATGAGTCAATAAACTAC+TGG | - | tig0019430:180050-180069 | Msa1373460:CDS | 25.0% |
| ! | GATCATTATTTGGTTATATC+TGG | + | tig0019430:180079-180098 | None:intergenic | 25.0% |
| ! | ATTTGATCATAGAGATTATC+CGG | + | tig0019430:180242-180261 | None:intergenic | 25.0% |
| ! | AAATAAAATTATGGGATTGG+TGG | + | tig0019430:180286-180305 | None:intergenic | 25.0% |
| !! | GTTTTTATTAGTTGTCTTTG+TGG | - | tig0019430:180462-180481 | Msa1373460:CDS | 25.0% |
| !! | TTTTATTAGTTGTCTTTGTG+GGG | - | tig0019430:180464-180483 | Msa1373460:CDS | 25.0% |
| ! | CAAAGAAGTAAAAGAATACA+AGG | - | tig0019430:180970-180989 | Msa1373460:CDS | 25.0% |
| !!! | ACATTTTTTGCAAGAGTTCT+TGG | + | tig0019430:177395-177414 | None:intergenic | 30.0% |
| TTGCAAAAAATGTCATTGAG+AGG | - | tig0019430:177402-177421 | Msa1373460:three_prime_UTR | 30.0% | |
| TAGATATCTTCGATTGTGAT+TGG | + | tig0019430:177485-177504 | None:intergenic | 30.0% | |
| ATCTATGCTAGATCATTGAA+TGG | - | tig0019430:177500-177519 | Msa1373460:CDS | 30.0% | |
| ! | TCTTCCAATGAATAGCTTTT+CGG | + | tig0019430:177557-177576 | None:intergenic | 30.0% |
| TATCCATTGGACATTCTATA+AGG | + | tig0019430:177581-177600 | None:intergenic | 30.0% | |
| !!! | GAAAACTTTTTTCCTGACTA+TGG | - | tig0019430:177731-177750 | Msa1373460:CDS | 30.0% |
| TAGAAGTTTCAACCCATATA+AGG | - | tig0019430:177819-177838 | Msa1373460:intron | 30.0% | |
| TACACAATTAAGTTCTTCCT+TGG | + | tig0019430:177870-177889 | None:intergenic | 30.0% | |
| TAATTGTGTAAAGACAGAAC+TGG | - | tig0019430:177880-177899 | Msa1373460:intron | 30.0% | |
| AGTAAGGCAGAAAAAATGAA+AGG | - | tig0019430:178160-178179 | Msa1373460:intron | 30.0% | |
| GTAAGGCAGAAAAAATGAAA+GGG | - | tig0019430:178161-178180 | Msa1373460:intron | 30.0% | |
| TAAGGCAGAAAAAATGAAAG+GGG | - | tig0019430:178162-178181 | Msa1373460:intron | 30.0% | |
| TCTCTTCAAAATTTCTTCGA+AGG | + | tig0019430:178261-178280 | None:intergenic | 30.0% | |
| !! | TCGAAGAAATTTTGAAGAGA+AGG | - | tig0019430:178261-178280 | Msa1373460:intron | 30.0% |
| !! | AAATTTTGAAGAGAAGGAGA+AGG | - | tig0019430:178267-178286 | Msa1373460:intron | 30.0% |
| ACAATAATAGGATTACGAGA+TGG | - | tig0019430:178352-178371 | Msa1373460:intron | 30.0% | |
| CAATAATAGGATTACGAGAT+GGG | - | tig0019430:178353-178372 | Msa1373460:intron | 30.0% | |
| AATAGAATCAGTCTTGAGAA+GGG | - | tig0019430:178465-178484 | Msa1373460:intron | 30.0% | |
| ATACTTGTGTTCAAAGTTAC+TGG | - | tig0019430:178666-178685 | Msa1373460:intron | 30.0% | |
| ! | GAATCTGAAACCAAAATTCA+TGG | - | tig0019430:178748-178767 | Msa1373460:intron | 30.0% |
| !! | ACTTTTGAGTCCATGAATTT+TGG | + | tig0019430:178761-178780 | None:intergenic | 30.0% |
| AAAATTCATGGACTCAAAAG+TGG | - | tig0019430:178760-178779 | Msa1373460:intron | 30.0% | |
| ! | GACTTTTCTTTCAACAAAGA+AGG | + | tig0019430:178820-178839 | None:intergenic | 30.0% |
| ATTGAATAATCAATCGTCAG+AGG | - | tig0019430:178876-178895 | Msa1373460:intron | 30.0% | |
| AAATGACATACTTAGATCTG+AGG | - | tig0019430:179176-179195 | Msa1373460:CDS | 30.0% | |
| TTTCTAACAATGCATGGAAT+AGG | + | tig0019430:179306-179325 | None:intergenic | 30.0% | |
| ATTCCATGCATTGTTAGAAA+AGG | - | tig0019430:179306-179325 | Msa1373460:intron | 30.0% | |
| ! | TATCCTTTTCTAACAATGCA+TGG | + | tig0019430:179312-179331 | None:intergenic | 30.0% |
| ! | ACCCATATATGCACTTTTAT+AGG | + | tig0019430:179339-179358 | None:intergenic | 30.0% |
| ! | ATAAAAGTGCATATATGGGT+AGG | - | tig0019430:179339-179358 | Msa1373460:intron | 30.0% |
| TAAACTATATAACTAGCAGC+AGG | - | tig0019430:179459-179478 | Msa1373460:CDS | 30.0% | |
| TTAGGAACAAATCAATGAAG+CGG | + | tig0019430:179545-179564 | None:intergenic | 30.0% | |
| AACACTAAAACATAATGCCA+CGG | - | tig0019430:179922-179941 | Msa1373460:CDS | 30.0% | |
| ! | ACTTTAATTTAGGCCTCTAT+GGG | + | tig0019430:179975-179994 | None:intergenic | 30.0% |
| ! | AACTTTAATTTAGGCCTCTA+TGG | + | tig0019430:179976-179995 | None:intergenic | 30.0% |
| TTTGATCATAGAGATTATCC+GGG | + | tig0019430:180241-180260 | None:intergenic | 30.0% | |
| TTTGTCGAATCTCTATGATA+TGG | + | tig0019430:180364-180383 | None:intergenic | 30.0% | |
| !!! | GATTCGACAAAGTTTTAAGT+TGG | - | tig0019430:180373-180392 | Msa1373460:CDS | 30.0% |
| TGATACCGATATACTCATTA+AGG | - | tig0019430:180748-180767 | Msa1373460:CDS | 30.0% | |
| ACCTTCCTTAATGAGTATAT+CGG | + | tig0019430:180756-180775 | None:intergenic | 30.0% | |
| TCAAATATCAATGTTGCAAG+AGG | - | tig0019430:180775-180794 | Msa1373460:CDS | 30.0% | |
| ! | CTTTTCATAATCTGTTTCAC+AGG | - | tig0019430:180946-180965 | Msa1373460:CDS | 30.0% |
| TTGTCTTTGACTCCATTAGT+TGG | + | tig0019430:177281-177300 | None:intergenic | 35.0% | |
| TCTACCGAAAAGCTATTCAT+TGG | - | tig0019430:177550-177569 | Msa1373460:CDS | 35.0% | |
| GAACCTTATAGAATGTCCAA+TGG | - | tig0019430:177575-177594 | Msa1373460:CDS | 35.0% | |
| AATGGATATCATGACATGGA+CGG | - | tig0019430:177593-177612 | Msa1373460:CDS | 35.0% | |
| ! | AGCAATTTGGGACCTTATAT+GGG | + | tig0019430:177834-177853 | None:intergenic | 35.0% |
| TAAAGACAGAACTGGAGATT+CGG | - | tig0019430:177888-177907 | Msa1373460:intron | 35.0% | |
| ! | AAGTTTCCTCTTTTAGTGAG+AGG | - | tig0019430:178080-178099 | Msa1373460:intron | 35.0% |
| ! | AGTTTCCTCTTTTAGTGAGA+GGG | - | tig0019430:178081-178100 | Msa1373460:intron | 35.0% |
| AAAAATGAAAGGGGAGATTC+TGG | - | tig0019430:178171-178190 | Msa1373460:intron | 35.0% | |
| AAAATGAAAGGGGAGATTCT+GGG | - | tig0019430:178172-178191 | Msa1373460:intron | 35.0% | |
| !! | ATCTGTCTTGTAGTTCTAAG+AGG | + | tig0019430:178210-178229 | None:intergenic | 35.0% |
| CAAGATAGCTGAAGAAAACA+GGG | - | tig0019430:178231-178250 | Msa1373460:intron | 35.0% | |
| GAGCAAGAGAAGACAATAAT+AGG | - | tig0019430:178340-178359 | Msa1373460:intron | 35.0% | |
| GAATAGAATCAGTCTTGAGA+AGG | - | tig0019430:178464-178483 | Msa1373460:intron | 35.0% | |
| TGCCTTCATTTAGCATTGTT+AGG | + | tig0019430:178645-178664 | None:intergenic | 35.0% | |
| AAAGAGAATGGACAGATTAC+TGG | - | tig0019430:178697-178716 | Msa1373460:intron | 35.0% | |
| AATGGACAGATTACTGGAAA+TGG | - | tig0019430:178703-178722 | Msa1373460:intron | 35.0% | |
| ATGGACAGATTACTGGAAAT+GGG | - | tig0019430:178704-178723 | Msa1373460:intron | 35.0% | |
| !! | CATCATGCTGTTTCTTGTAT+AGG | - | tig0019430:179032-179051 | Msa1373460:intron | 35.0% |
| AGTGAATTTCAATGATCTGC+TGG | + | tig0019430:179439-179458 | None:intergenic | 35.0% | |
| TAAGTGCGAAAATGGGAATT+AGG | + | tig0019430:179563-179582 | None:intergenic | 35.0% | |
| GTCGTGAAATTAAAGTAGGT+TGG | + | tig0019430:179866-179885 | None:intergenic | 35.0% | |
| ACACTAAAACATAATGCCAC+GGG | - | tig0019430:179923-179942 | Msa1373460:CDS | 35.0% | |
| !! | GGTTTCTTGTGCTTTTTACA+CGG | + | tig0019430:180193-180212 | None:intergenic | 35.0% |
| TTTCGTTCATATAGGATTGG+TGG | + | tig0019430:180214-180233 | None:intergenic | 35.0% | |
| ACCAATCCTATATGAACGAA+AGG | - | tig0019430:180213-180232 | Msa1373460:CDS | 35.0% | |
| ACCTTTCGTTCATATAGGAT+TGG | + | tig0019430:180217-180236 | None:intergenic | 35.0% | |
| ACAGTATAAACTGCCTTCAA+CGG | - | tig0019430:180564-180583 | Msa1373460:CDS | 35.0% | |
| AAGGGAGTTATCAATCATGA+GGG | - | tig0019430:180604-180623 | Msa1373460:CDS | 35.0% | |
| GAAAGTGAAGCAAATTAGTG+AGG | - | tig0019430:180670-180689 | Msa1373460:CDS | 35.0% | |
| ACCGATATACTCATTAAGGA+AGG | - | tig0019430:180752-180771 | Msa1373460:CDS | 35.0% | |
| CACTCATATATGTGAATGAG+TGG | - | tig0019430:180880-180899 | Msa1373460:CDS | 35.0% | |
| ACACCTAATTCGCCAACTAA+TGG | - | tig0019430:177266-177285 | Msa1373460:three_prime_UTR | 40.0% | |
| ACTCCATTAGTTGGCGAATT+AGG | + | tig0019430:177272-177291 | None:intergenic | 40.0% | |
| ATGGAGTCAAAGACAAACCT+AGG | - | tig0019430:177285-177304 | Msa1373460:three_prime_UTR | 40.0% | |
| TGGAGTCAAAGACAAACCTA+GGG | - | tig0019430:177286-177305 | Msa1373460:three_prime_UTR | 40.0% | |
| TCTCTAAATGAATGAGCCCT+AGG | + | tig0019430:177305-177324 | None:intergenic | 40.0% | |
| ATTGGACAGACAATGGGTAT+GGG | - | tig0019430:177360-177379 | Msa1373460:three_prime_UTR | 40.0% | |
| GTCCAATGGATATCATGACA+TGG | - | tig0019430:177589-177608 | Msa1373460:CDS | 40.0% | |
| GTCCATGTCATGATATCCAT+TGG | + | tig0019430:177594-177613 | None:intergenic | 40.0% | |
| AAGCTATGATGAACCTGAAG+AGG | - | tig0019430:177631-177650 | Msa1373460:CDS | 40.0% | |
| !! | AGCCAAGCTTATTTTCTCCT+CGG | + | tig0019430:177798-177817 | None:intergenic | 40.0% |
| ! | CAGCAATTTGGGACCTTATA+TGG | + | tig0019430:177835-177854 | None:intergenic | 40.0% |
| AGATGCTCTGTCAGCAATTT+GGG | + | tig0019430:177846-177865 | None:intergenic | 40.0% | |
| TGTTTCCCTCTCACTAAAAG+AGG | + | tig0019430:178089-178108 | None:intergenic | 40.0% | |
| GCAAGATAGCTGAAGAAAAC+AGG | - | tig0019430:178230-178249 | Msa1373460:intron | 40.0% | |
| ! | CCACAGACTGGTTCTTATTA+AGG | + | tig0019430:178390-178409 | None:intergenic | 40.0% |
| CCTTAATAAGAACCAGTCTG+TGG | - | tig0019430:178387-178406 | Msa1373460:intron | 40.0% | |
| GCACATCAAGAAAATGCAGA+TGG | - | tig0019430:178423-178442 | Msa1373460:intron | 40.0% | |
| GTTGGAATCACACAAGTTTG+AGG | - | tig0019430:178489-178508 | Msa1373460:intron | 40.0% | |
| ACTCTCTTAAACCGGTTGAA+AGG | - | tig0019430:178538-178557 | Msa1373460:intron | 40.0% | |
| TTAAACCGGTTGAAAGGTGA+TGG | - | tig0019430:178544-178563 | Msa1373460:intron | 40.0% | |
| TTGTTAGGCCTTGATTCTGA+AGG | + | tig0019430:178630-178649 | None:intergenic | 40.0% | |
| GGCCTAACAATGCTAAATGA+AGG | - | tig0019430:178640-178659 | Msa1373460:intron | 40.0% | |
| CTGGAACTCGTTAAAGAGAA+TGG | - | tig0019430:178685-178704 | Msa1373460:intron | 40.0% | |
| !! | ATTACTGGAAATGGGTTAGC+TGG | - | tig0019430:178712-178731 | Msa1373460:intron | 40.0% |
| !! | TGAACTTGCTACAGCAGTAA+GGG | - | tig0019430:179152-179171 | Msa1373460:CDS | 40.0% |
| GTTGAAGAACCTTGAACTTC+AGG | - | tig0019430:179239-179258 | Msa1373460:intron | 40.0% | |
| !!! | CAGCAGGTTTTAGAGTGATT+TGG | - | tig0019430:179475-179494 | Msa1373460:CDS | 40.0% |
| TGGGTGAAAAAATGGTGAAG+TGG | + | tig0019430:179618-179637 | None:intergenic | 40.0% | |
| TAGCAGGCTTGAGAAAGATT+TGG | - | tig0019430:179781-179800 | Msa1373460:CDS | 40.0% | |
| CCTCGTCGTGAAATTAAAGT+AGG | + | tig0019430:179870-179889 | None:intergenic | 40.0% | |
| ! | CCTACTTTAATTTCACGACG+AGG | - | tig0019430:179867-179886 | Msa1373460:CDS | 40.0% |
| GTGTTCTTTAGGTGCAATGA+TGG | + | tig0019430:179907-179926 | None:intergenic | 40.0% | |
| ATGTCATGTCTCATGGTTTC+TGG | + | tig0019430:180133-180152 | None:intergenic | 40.0% | |
| AACCATGAGACATGACATCT+CGG | - | tig0019430:180135-180154 | Msa1373460:CDS | 40.0% | |
| CTATATGAACGAAAGGTTCC+CGG | - | tig0019430:180220-180239 | Msa1373460:CDS | 40.0% | |
| TGGTTTCTTGTACTCATCGA+TGG | + | tig0019430:180266-180285 | None:intergenic | 40.0% | |
| !!! | AAGTTTTAAGTTGGCAGTCG+AGG | - | tig0019430:180382-180401 | Msa1373460:CDS | 40.0% |
| CTTATCCCACTAAAAGGAGA+GGG | + | tig0019430:180418-180437 | None:intergenic | 40.0% | |
| TCTTATCCCACTAAAAGGAG+AGG | + | tig0019430:180419-180438 | None:intergenic | 40.0% | |
| ! | CCTTTTAGTGGGATAAGACT+CGG | - | tig0019430:180421-180440 | Msa1373460:CDS | 40.0% |
| CAGTATAAACTGCCTTCAAC+GGG | - | tig0019430:180565-180584 | Msa1373460:CDS | 40.0% | |
| GGATCTTCAAGAGTCTACAA+GGG | - | tig0019430:180586-180605 | Msa1373460:CDS | 40.0% | |
| CAAGGGAGTTATCAATCATG+AGG | - | tig0019430:180603-180622 | Msa1373460:CDS | 40.0% | |
| AGGGAGTTATCAATCATGAG+GGG | - | tig0019430:180605-180624 | Msa1373460:CDS | 40.0% | |
| !! | AATGTTGCCAAAAGTGTCAG+AGG | - | tig0019430:180628-180647 | Msa1373460:CDS | 40.0% |
| CTCAGAGATCGAAATGCTAA+AGG | - | tig0019430:180709-180728 | Msa1373460:CDS | 40.0% | |
| ACAAAAGACCCTGTCTCTAT+GGG | - | tig0019430:180804-180823 | Msa1373460:CDS | 40.0% | |
| TTCGTTCCTCATCCCAAGAT+TGG | - | tig0019430:177342-177361 | Msa1373460:three_prime_UTR | 45.0% | |
| TCCCAAGATTGGACAGACAA+TGG | - | tig0019430:177353-177372 | Msa1373460:three_prime_UTR | 45.0% | |
| CCCATTGTCTGTCCAATCTT+GGG | + | tig0019430:177357-177376 | None:intergenic | 45.0% | |
| CCCAAGATTGGACAGACAAT+GGG | - | tig0019430:177354-177373 | Msa1373460:three_prime_UTR | 45.0% | |
| ACCCATTGTCTGTCCAATCT+TGG | + | tig0019430:177358-177377 | None:intergenic | 45.0% | |
| GATTGGACAGACAATGGGTA+TGG | - | tig0019430:177359-177378 | Msa1373460:three_prime_UTR | 45.0% | |
| ATGACATGGACGGTAATTGC+AGG | - | tig0019430:177603-177622 | Msa1373460:CDS | 45.0% | |
| TGACATGGACGGTAATTGCA+GGG | - | tig0019430:177604-177623 | Msa1373460:CDS | 45.0% | |
| TCTGCATCAAGATCCTCTTC+AGG | + | tig0019430:177647-177666 | None:intergenic | 45.0% | |
| GAGAAGATCAAAGGAAGCTG+AGG | - | tig0019430:177673-177692 | Msa1373460:CDS | 45.0% | |
| GTCACGTCATAACCATAGTC+AGG | + | tig0019430:177746-177765 | None:intergenic | 45.0% | |
| !! | AGCTTATTTTCTCCTCGGCT+AGG | + | tig0019430:177793-177812 | None:intergenic | 45.0% |
| AGCCGAGGAGAAAATAAGCT+TGG | - | tig0019430:177793-177812 | Msa1373460:intron | 45.0% | |
| CAGATGCTCTGTCAGCAATT+TGG | + | tig0019430:177847-177866 | None:intergenic | 45.0% | |
| GAATGAGATGCAGTCAGCAT+TGG | - | tig0019430:177934-177953 | Msa1373460:intron | 45.0% | |
| ! | GTCAGCATTGGAGAAGGAAT+TGG | - | tig0019430:177946-177965 | Msa1373460:intron | 45.0% |
| CATTGGAGAAGGAATTGGAC+AGG | - | tig0019430:177951-177970 | Msa1373460:intron | 45.0% | |
| AGTACCAGTCAGAAGAGCAA+AGG | - | tig0019430:178005-178024 | Msa1373460:intron | 45.0% | |
| ACATACTGACCAACAGCTCA+AGG | - | tig0019430:178129-178148 | Msa1373460:intron | 45.0% | |
| TAGTCAACACCTTGAGCTGT+TGG | + | tig0019430:178141-178160 | None:intergenic | 45.0% | |
| !! | GCTCAAGGTGTTGACTAGTA+AGG | - | tig0019430:178144-178163 | Msa1373460:intron | 45.0% |
| TATCAATGCTCTCCACAGAC+TGG | + | tig0019430:178402-178421 | None:intergenic | 45.0% | |
| AAATGCAGATGGAGCTGATG+AGG | - | tig0019430:178434-178453 | Msa1373460:intron | 45.0% | |
| GATGGAGCTGATGAGGTTAA+CGG | - | tig0019430:178441-178460 | Msa1373460:intron | 45.0% | |
| ATGGAGCTGATGAGGTTAAC+GGG | - | tig0019430:178442-178461 | Msa1373460:intron | 45.0% | |
| ATCAGTCTTGAGAAGGGAGT+TGG | - | tig0019430:178471-178490 | Msa1373460:intron | 45.0% | |
| GGAATCACACAAGTTTGAGG+AGG | - | tig0019430:178492-178511 | Msa1373460:intron | 45.0% | |
| CTTTGCCATCACCTTTCAAC+CGG | + | tig0019430:178552-178571 | None:intergenic | 45.0% | |
| TAGACAAAGAACTATGCGCC+CGG | - | tig0019430:178596-178615 | Msa1373460:intron | 45.0% | |
| ATCTGCTGCCTTCAGAATCA+AGG | - | tig0019430:178619-178638 | Msa1373460:intron | 45.0% | |
| TGGACTCAAAAGTGGAACTG+AGG | - | tig0019430:178768-178787 | Msa1373460:intron | 45.0% | |
| GGACTCAAAAGTGGAACTGA+GGG | - | tig0019430:178769-178788 | Msa1373460:intron | 45.0% | |
| GACTCAAAAGTGGAACTGAG+GGG | - | tig0019430:178770-178789 | Msa1373460:intron | 45.0% | |
| TGAGCTTAAAGCGGAACGTT+TGG | - | tig0019430:179068-179087 | Msa1373460:CDS | 45.0% | |
| CAGCTTGTATCTGCTCAACT+TGG | + | tig0019430:179134-179153 | None:intergenic | 45.0% | |
| !! | CTGAACTTGCTACAGCAGTA+AGG | - | tig0019430:179151-179170 | Msa1373460:CDS | 45.0% |
| !! | GAACTTGCTACAGCAGTAAG+GGG | - | tig0019430:179153-179172 | Msa1373460:CDS | 45.0% |
| CTAACCTTGTAACTGCTAGC+AGG | - | tig0019430:179765-179784 | Msa1373460:CDS | 45.0% | |
| GGCTTGAGAAAGATTTGGCA+CGG | - | tig0019430:179786-179805 | Msa1373460:CDS | 45.0% | |
| ! | CTTTAGGTGCAATGATGGTG+TGG | + | tig0019430:179902-179921 | None:intergenic | 45.0% |
| AAACATAATGCCACGGGCAA+TGG | - | tig0019430:179929-179948 | Msa1373460:CDS | 45.0% | |
| AACCGAGATGTCATGTCTCA+TGG | + | tig0019430:180140-180159 | None:intergenic | 45.0% | |
| ATGAGACATGACATCTCGGT+TGG | - | tig0019430:180139-180158 | Msa1373460:CDS | 45.0% | |
| CGGGAACCTTTCGTTCATAT+AGG | + | tig0019430:180222-180241 | None:intergenic | 45.0% | |
| ! | ACACAACCCTCTCCTTTTAG+TGG | - | tig0019430:180409-180428 | Msa1373460:CDS | 45.0% |
| ! | CACAACCCTCTCCTTTTAGT+GGG | - | tig0019430:180410-180429 | Msa1373460:CDS | 45.0% |
| ! | CCGAGTCTTATCCCACTAAA+AGG | + | tig0019430:180424-180443 | None:intergenic | 45.0% |
| ACTCTTGAAGATCCCGTTGA+AGG | + | tig0019430:180580-180599 | None:intergenic | 45.0% | |
| GGGATCTTCAAGAGTCTACA+AGG | - | tig0019430:180585-180604 | Msa1373460:CDS | 45.0% | |
| AGAGGAGAGGGATAAGTTGT+GGG | - | tig0019430:180646-180665 | Msa1373460:CDS | 45.0% | |
| GACAAAAGACCCTGTCTCTA+TGG | - | tig0019430:180803-180822 | Msa1373460:CDS | 45.0% | |
| CTTGGGATGAGGAACGAAGA+CGG | + | tig0019430:177340-177359 | None:intergenic | 50.0% | |
| GTCTGTCCAATCTTGGGATG+AGG | + | tig0019430:177351-177370 | None:intergenic | 50.0% | |
| GACATGGACGGTAATTGCAG+GGG | - | tig0019430:177605-177624 | Msa1373460:CDS | 50.0% | |
| GACAATCAGAAACCTAGCCG+AGG | - | tig0019430:177778-177797 | Msa1373460:intron | 50.0% | |
| ! | GATGCAGTCAGCATTGGAGA+AGG | - | tig0019430:177940-177959 | Msa1373460:intron | 50.0% |
| TGGAGAAGGAATTGGACAGG+AGG | - | tig0019430:177954-177973 | Msa1373460:intron | 50.0% | |
| GAAGCCTTTGCTCTTCTGAC+TGG | + | tig0019430:178012-178031 | None:intergenic | 50.0% | |
| ! | ATTCTGAAGGCAGCAGATCC+GGG | + | tig0019430:178617-178636 | None:intergenic | 50.0% |
| ! | GATTCTGAAGGCAGCAGATC+CGG | + | tig0019430:178618-178637 | None:intergenic | 50.0% |
| GTGGAACTGAGGGGTTAACA+AGG | - | tig0019430:178779-178798 | Msa1373460:intron | 50.0% | |
| ACTCGTGAGACGCAGTTGAA+AGG | + | tig0019430:179221-179240 | None:intergenic | 50.0% | |
| GGTGACAGACCTGAAGTTCA+AGG | + | tig0019430:179251-179270 | None:intergenic | 50.0% | |
| CAAGCCTGCTAGCAGTTACA+AGG | + | tig0019430:179772-179791 | None:intergenic | 50.0% | |
| CTGCATGACAAAGCCCATAG+AGG | - | tig0019430:179959-179978 | Msa1373460:CDS | 50.0% | |
| !! | TGCCAAAAGTGTCAGAGGAG+AGG | - | tig0019430:180633-180652 | Msa1373460:CDS | 50.0% |
| !! | GCCAAAAGTGTCAGAGGAGA+GGG | - | tig0019430:180634-180653 | Msa1373460:CDS | 50.0% |
| ! | TCCCTCTCCTCTGACACTTT+TGG | + | tig0019430:180638-180657 | None:intergenic | 50.0% |
| CAGAGGAGAGGGATAAGTTG+TGG | - | tig0019430:180645-180664 | Msa1373460:CDS | 50.0% | |
| TCAGGACTCCCATAGAGACA+GGG | + | tig0019430:180815-180834 | None:intergenic | 50.0% | |
| ATCAGGACTCCCATAGAGAC+AGG | + | tig0019430:180816-180835 | None:intergenic | 50.0% | |
| ! | TGCTGACAGAGCATCTGCCA+AGG | - | tig0019430:177850-177869 | Msa1373460:intron | 55.0% |
| TGGACAGGAGGTCAAGTGAC+TGG | - | tig0019430:177966-177985 | Msa1373460:intron | 55.0% | |
| ! | GGGCTTTGTCATGCAGCCAT+AGG | + | tig0019430:179955-179974 | None:intergenic | 55.0% |
| CATGACATCTCGGTTGGCAC+TGG | - | tig0019430:180145-180164 | Msa1373460:CDS | 55.0% | |
| ATGCCACGGGCAATGGCCTA+TGG | - | tig0019430:179936-179955 | Msa1373460:CDS | 60.0% | |
| CAGCCATAGGCCATTGCCCG+TGG | + | tig0019430:179942-179961 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019430 | gene | 177260 | 181039 | 177260 | ID=Msa1373460;Name=Msa1373460 |
| tig0019430 | mRNA | 177260 | 181039 | 177260 | ID=Msa1373460-mRNA-1;Parent=Msa1373460;Name=Msa1373460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|186|716 |
| tig0019430 | exon | 177260 | 177751 | 177260 | ID=Msa1373460-mRNA-1:exon:3319;Parent=Msa1373460-mRNA-1 |
| tig0019430 | exon | 179039 | 179245 | 179039 | ID=Msa1373460-mRNA-1:exon:3318;Parent=Msa1373460-mRNA-1 |
| tig0019430 | exon | 179402 | 181039 | 179402 | ID=Msa1373460-mRNA-1:exon:3317;Parent=Msa1373460-mRNA-1 |
| tig0019430 | CDS | 179402 | 181039 | 179402 | ID=Msa1373460-mRNA-1:cds;Parent=Msa1373460-mRNA-1 |
| tig0019430 | CDS | 179039 | 179245 | 179039 | ID=Msa1373460-mRNA-1:cds;Parent=Msa1373460-mRNA-1 |
| tig0019430 | CDS | 177446 | 177751 | 177446 | ID=Msa1373460-mRNA-1:cds;Parent=Msa1373460-mRNA-1 |
| tig0019430 | three_prime_UTR | 177260 | 177445 | 177260 | ID=Msa1373460-mRNA-1:three_prime_utr;Parent=Msa1373460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
