Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383630 | XP_003604990.1 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 6.51e-162 | 456 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383630 | sp|Q9MAS5|VA726_ARATH | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.21e-132 | 374 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383630 | G7JUL3 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 3.11e-162 | 456 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001550 | Msa1383630 | -0.815427 | 9.297553e-52 | -8.615850e-47 |
Msa0052780 | Msa1383630 | 0.809232 | 2.094636e-50 | -8.615850e-47 |
Msa0067590 | Msa1383630 | -0.825378 | 4.842440e-54 | -8.615850e-47 |
Msa0077370 | Msa1383630 | 0.800940 | 1.138632e-48 | -8.615850e-47 |
Msa0081610 | Msa1383630 | -0.806974 | 6.338523e-50 | -8.615850e-47 |
Msa0090510 | Msa1383630 | 0.821935 | 3.098721e-53 | -8.615850e-47 |
Msa0097570 | Msa1383630 | 0.819196 | 1.318272e-52 | -8.615850e-47 |
Msa0113370 | Msa1383630 | -0.804690 | 1.913681e-49 | -8.615850e-47 |
Msa1364350 | Msa1383630 | -0.819920 | 9.013675e-53 | -8.615850e-47 |
Msa1375610 | Msa1383630 | -0.810191 | 1.303140e-50 | -8.615850e-47 |
Msa1376550 | Msa1383630 | -0.820497 | 6.647389e-53 | -8.615850e-47 |
Msa0626920 | Msa1383630 | 0.819250 | 1.281860e-52 | -8.615850e-47 |
Msa0646420 | Msa1383630 | 0.801593 | 8.368953e-49 | -8.615850e-47 |
Msa0671170 | Msa1383630 | 0.990278 | 6.990748e-182 | -8.615850e-47 |
Msa0671210 | Msa1383630 | 0.990723 | 5.207591e-184 | -8.615850e-47 |
Msa0693750 | Msa1383630 | 0.837387 | 5.355841e-57 | -8.615850e-47 |
Msa0694140 | Msa1383630 | 0.846576 | 1.991720e-59 | -8.615850e-47 |
Msa0744640 | Msa1383630 | 0.826710 | 2.336524e-54 | -8.615850e-47 |
Msa0796580 | Msa1383630 | -0.808147 | 3.571821e-50 | -8.615850e-47 |
Msa0833950 | Msa1383630 | -0.821552 | 3.799351e-53 | -8.615850e-47 |
Msa0841730 | Msa1383630 | 0.825871 | 3.700273e-54 | -8.615850e-47 |
Msa0138990 | Msa1383630 | -0.827066 | 1.921003e-54 | -8.615850e-47 |
Msa0140770 | Msa1383630 | -0.807677 | 4.498119e-50 | -8.615850e-47 |
Msa0173950 | Msa1383630 | -0.809202 | 2.126217e-50 | -8.615850e-47 |
Msa0183910 | Msa1383630 | 0.814666 | 1.371322e-51 | -8.615850e-47 |
Msa0220400 | Msa1383630 | -0.815199 | 1.044578e-51 | -8.615850e-47 |
Msa1265020 | Msa1383630 | 0.828195 | 1.029110e-54 | -8.615850e-47 |
Msa1307160 | Msa1383630 | 0.801941 | 7.100112e-49 | -8.615850e-47 |
Msa1337850 | Msa1383630 | 0.822583 | 2.192399e-53 | -8.615850e-47 |
Msa1342960 | Msa1383630 | -0.840455 | 8.607686e-58 | -8.615850e-47 |
Msa0370580 | Msa1383630 | -0.809515 | 1.821615e-50 | -8.615850e-47 |
Msa0380400 | Msa1383630 | -0.828720 | 7.686612e-55 | -8.615850e-47 |
Msa0435130 | Msa1383630 | -0.803318 | 3.690651e-49 | -8.615850e-47 |
Msa0476170 | Msa1383630 | -0.815734 | 7.942106e-52 | -8.615850e-47 |
Msa1085610 | Msa1383630 | -0.823244 | 1.537309e-53 | -8.615850e-47 |
Msa0254470 | Msa1383630 | 0.801002 | 1.105623e-48 | -8.615850e-47 |
Msa1128270 | Msa1383630 | 0.820059 | 8.378239e-53 | -8.615850e-47 |
Msa1128280 | Msa1383630 | 0.808930 | 2.431208e-50 | -8.615850e-47 |
Msa1165270 | Msa1383630 | 0.801109 | 1.051173e-48 | -8.615850e-47 |
Msa1173150 | Msa1383630 | 0.818279 | 2.129548e-52 | -8.615850e-47 |
Msa1207920 | Msa1383630 | -0.807706 | 4.434443e-50 | -8.615850e-47 |
Msa0523430 | Msa1383630 | -0.801191 | 1.011776e-48 | -8.615850e-47 |
Msa0536350 | Msa1383630 | 0.962515 | 5.710922e-121 | -8.615850e-47 |
Msa0549950 | Msa1383630 | 0.801643 | 8.173597e-49 | -8.615850e-47 |
Msa0566940 | Msa1383630 | -0.800589 | 1.342454e-48 | -8.615850e-47 |
Msa0576080 | Msa1383630 | -0.815599 | 8.511488e-52 | -8.615850e-47 |
Msa0576120 | Msa1383630 | -0.831771 | 1.381678e-55 | -8.615850e-47 |
Msa0592330 | Msa1383630 | 0.830896 | 2.267724e-55 | -8.615850e-47 |
Msa0969380 | Msa1383630 | 0.815626 | 8.394405e-52 | -8.615850e-47 |
Msa0969720 | Msa1383630 | 0.808824 | 2.561218e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383630 | MtrunA17_Chr4g0010271 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 5.99e-166 | 456 |
Msa1383630 | MtrunA17_Chr1g0169861 | 78.995 | 219 | 46 | 0 | 1 | 219 | 51 | 269 | 2.50e-138 | 388 |
Msa1383630 | MtrunA17_Chr7g0237561 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 1.72e-129 | 363 |
Msa1383630 | MtrunA17_Chr2g0296021 | 71.233 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 1.10e-122 | 346 |
Msa1383630 | MtrunA17_Chr4g0043521 | 79.275 | 193 | 40 | 0 | 3 | 195 | 5 | 197 | 3.93e-121 | 342 |
Msa1383630 | MtrunA17_Chr2g0291651 | 74.419 | 215 | 55 | 0 | 2 | 216 | 6 | 220 | 5.40e-115 | 327 |
Msa1383630 | MtrunA17_Chr7g0237521 | 75.385 | 195 | 48 | 0 | 1 | 195 | 1 | 195 | 1.39e-111 | 318 |
Msa1383630 | MtrunA17_Chr1g0210521 | 56.303 | 238 | 85 | 1 | 1 | 219 | 1 | 238 | 7.10e-102 | 294 |
Msa1383630 | MtrunA17_Chr4g0010211 | 95.370 | 108 | 5 | 0 | 64 | 171 | 3 | 110 | 1.90e-71 | 213 |
Msa1383630 | MtrunA17_Chr1g0169851 | 69.178 | 146 | 30 | 1 | 57 | 187 | 8 | 153 | 4.04e-70 | 211 |
Msa1383630 | MtrunA17_Chr5g0441741 | 39.151 | 212 | 126 | 3 | 6 | 216 | 3 | 212 | 1.50e-49 | 160 |
Msa1383630 | MtrunA17_Chr4g0026121 | 36.279 | 215 | 134 | 3 | 5 | 218 | 2 | 214 | 4.33e-46 | 152 |
Msa1383630 | MtrunA17_Chr4g0064371 | 33.180 | 217 | 136 | 5 | 6 | 216 | 3 | 216 | 6.54e-41 | 139 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383630 | AT1G04760.2 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.25e-133 | 374 |
Msa1383630 | AT1G04760.1 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.25e-133 | 374 |
Msa1383630 | AT1G04750.1 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 3.29e-129 | 363 |
Msa1383630 | AT2G32670.1 | 82.192 | 219 | 39 | 0 | 1 | 219 | 66 | 284 | 5.30e-129 | 365 |
Msa1383630 | AT2G33120.1 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 1.24e-128 | 362 |
Msa1383630 | AT2G33120.2 | 79.736 | 227 | 38 | 1 | 1 | 219 | 1 | 227 | 2.07e-125 | 354 |
Msa1383630 | AT3G54300.3 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
Msa1383630 | AT3G54300.2 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
Msa1383630 | AT3G54300.1 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
Msa1383630 | AT2G33110.1 | 67.580 | 219 | 67 | 1 | 1 | 219 | 1 | 215 | 5.90e-97 | 281 |
Msa1383630 | AT4G15780.1 | 70.391 | 179 | 52 | 1 | 1 | 178 | 1 | 179 | 2.49e-95 | 276 |
Msa1383630 | AT2G33110.2 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 3.45e-85 | 251 |
Msa1383630 | AT1G04750.2 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
Msa1383630 | AT1G04750.4 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
Msa1383630 | AT1G04750.3 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
Msa1383630 | AT5G11150.1 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 7.85e-53 | 169 |
Msa1383630 | AT5G11150.2 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 1.45e-52 | 169 |
Msa1383630 | AT5G22360.1 | 37.963 | 216 | 130 | 3 | 5 | 218 | 2 | 215 | 7.00e-51 | 164 |
Msa1383630 | AT4G32150.1 | 38.498 | 213 | 128 | 3 | 5 | 216 | 2 | 212 | 2.37e-48 | 158 |
Msa1383630 | AT2G25340.1 | 37.850 | 214 | 128 | 4 | 5 | 216 | 2 | 212 | 1.59e-43 | 145 |
Msa1383630 | AT2G33120.3 | 88.372 | 86 | 10 | 0 | 134 | 219 | 52 | 137 | 3.87e-36 | 124 |
Msa1383630 | AT3G24890.2 | 53.191 | 94 | 38 | 2 | 113 | 200 | 14 | 107 | 5.20e-25 | 95.5 |
Msa1383630 | AT3G24890.1 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
Msa1383630 | AT3G24890.4 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
Msa1383630 | AT3G24890.3 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
Msa1383630 | AT3G24890.5 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
Find 95 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTGTATTGTTTCATTTA+TGG | 0.065324 | tig0020610:+38611 | Msa1383630:three_prime_UTR |
AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | tig0020610:+36249 | Msa1383630:CDS |
CTTTGCAGGCACAAGATTTC+AGG | 0.218031 | tig0020610:+38075 | Msa1383630:intron |
GAGAGAGGTGGTGTCAAATT+TGG | 0.233821 | tig0020610:-34792 | None:intergenic |
AGAATTGTCACTACATATAT+TGG | 0.236659 | tig0020610:+38245 | Msa1383630:three_prime_UTR |
TTCAGCTTCCTCGTCGATAA+TGG | 0.292725 | tig0020610:+35119 | Msa1383630:CDS |
ACCACATCTTTCTCCTCAAC+TGG | 0.295387 | tig0020610:-38109 | None:intergenic |
GTTATTTGCAGGTTATTGAT+AGG | 0.304636 | tig0020610:+37500 | Msa1383630:intron |
GTTAGGAAGGGAAGTGAATA+AGG | 0.319681 | tig0020610:+38354 | Msa1383630:three_prime_UTR |
TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | tig0020610:-36358 | None:intergenic |
ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | tig0020610:-36171 | None:intergenic |
CTCCGGTCACCACCAGGGTC+AGG | 0.379723 | tig0020610:-38557 | None:intergenic |
TACCTCTGTAAGCGCCCTTT+CGG | 0.391076 | tig0020610:+38521 | Msa1383630:three_prime_UTR |
ATCATTGATCTATAGCTTTG+TGG | 0.397799 | tig0020610:+34968 | Msa1383630:CDS |
AACTCCCTGCTTCTAACAAC+AGG | 0.399581 | tig0020610:+35069 | Msa1383630:CDS |
TTTGTTTATTAGACATTCAA+TGG | 0.402021 | tig0020610:+38315 | Msa1383630:three_prime_UTR |
AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | tig0020610:+37552 | Msa1383630:CDS |
GCCCTGACCCTGGTGGTGAC+CGG | 0.421928 | tig0020610:+38555 | Msa1383630:three_prime_UTR |
GCAATATTGTGTGGAACATC+CGG | 0.431593 | tig0020610:+36378 | Msa1383630:CDS |
TTATTTGCAGGTTATTGATA+GGG | 0.435162 | tig0020610:+37501 | Msa1383630:intron |
GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | tig0020610:+38082 | Msa1383630:intron |
GGGAGAGAAGATTGAGGTGT+TGG | 0.441727 | tig0020610:+37522 | Msa1383630:CDS |
ATTCGGCTCCGGTCACCACC+AGG | 0.447582 | tig0020610:-38563 | None:intergenic |
GCAAGTTTGCTAACTTCCTC+CGG | 0.449150 | tig0020610:-36397 | None:intergenic |
TTGTGAATTGTGATCATTCA+TGG | 0.455075 | tig0020610:+34938 | Msa1383630:exon |
GTAAACCTGTTGTTAGAAGC+AGG | 0.458806 | tig0020610:-35074 | None:intergenic |
TGAAGTCAAAGGAGTTATGA+TGG | 0.459537 | tig0020610:+36441 | Msa1383630:CDS |
CCAGGGTCAGGGCAGGCCTC+CGG | 0.467838 | tig0020610:-38545 | None:intergenic |
AGAGAAGATTGAGGTGTTGG+TGG | 0.479742 | tig0020610:+37525 | Msa1383630:CDS |
CTGTAAGCGCCCTTTCGGTC+CGG | 0.482777 | tig0020610:+38526 | Msa1383630:three_prime_UTR |
CACAACCTTCCGAGGGGAAG+TGG | 0.483080 | tig0020610:-38446 | None:intergenic |
CCGGAGGCCTGCCCTGACCC+TGG | 0.483325 | tig0020610:+38545 | Msa1383630:three_prime_UTR |
ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | tig0020610:+38191 | Msa1383630:CDS |
ATCTATAGCTTTGTGGCTCG+TGG | 0.490761 | tig0020610:+34975 | Msa1383630:CDS |
AGTTTAGGTGGATTCGGCTC+CGG | 0.492682 | tig0020610:-38574 | None:intergenic |
TGGCTCAGTTGGTAAGGAAC+GGG | 0.493822 | tig0020610:+38423 | Msa1383630:three_prime_UTR |
ATGCTTTAGACCAAAGTTGA+AGG | 0.496438 | tig0020610:+36348 | Msa1383630:intron |
TGATAGGGGAGAGAAGATTG+AGG | 0.498472 | tig0020610:+37516 | Msa1383630:CDS |
AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | tig0020610:+36250 | Msa1383630:CDS |
AAAATGATGAAGAAATGAAA+AGG | 0.501975 | tig0020610:-34850 | None:intergenic |
CCAACACACGTTGGCTCAGT+TGG | 0.513561 | tig0020610:+38412 | Msa1383630:three_prime_UTR |
GTCACCACCAGGGTCAGGGC+AGG | 0.516535 | tig0020610:-38552 | None:intergenic |
TATTTGCAGGTTATTGATAG+GGG | 0.520975 | tig0020610:+37502 | Msa1383630:intron |
GGAAGTGAATAAGGTGTGGT+AGG | 0.525716 | tig0020610:+38363 | Msa1383630:three_prime_UTR |
ACACGTTGGCTCAGTTGGTA+AGG | 0.528013 | tig0020610:+38417 | Msa1383630:three_prime_UTR |
TCCGGTCACCACCAGGGTCA+GGG | 0.532476 | tig0020610:-38556 | None:intergenic |
TGATGTGAGGATGGTGTTGG+TGG | 0.538282 | tig0020610:+38486 | Msa1383630:three_prime_UTR |
AGGTTTACTTACAACTGTGA+TGG | 0.540715 | tig0020610:+35089 | Msa1383630:CDS |
TTTAATAAAAGATATGGTGG+AGG | 0.542291 | tig0020610:+36204 | Msa1383630:CDS |
ATCGAACACACAACCTTCCG+AGG | 0.552585 | tig0020610:-38454 | None:intergenic |
GATGTGAGGATGGTGTTGGT+GGG | 0.554623 | tig0020610:+38487 | Msa1383630:three_prime_UTR |
GGGCAGGCCTCCGGACCGAA+AGG | 0.557828 | tig0020610:-38536 | None:intergenic |
TTGAAGACACTGTAAAGCAA+TGG | 0.558595 | tig0020610:-35045 | None:intergenic |
GGCAGGCCTCCGGACCGAAA+GGG | 0.562834 | tig0020610:-38535 | None:intergenic |
GGCAGCAGGGAACCCAGTTG+AGG | 0.565308 | tig0020610:+38096 | Msa1383630:CDS |
AGAGGTGGTGTCAAATTTGG+AGG | 0.566987 | tig0020610:-34789 | None:intergenic |
ACGGGCCACTTCCCCTCGGA+AGG | 0.568566 | tig0020610:+38441 | Msa1383630:three_prime_UTR |
TGCAGCAGATTCAATAGAAG+AGG | 0.571940 | tig0020610:-34910 | None:intergenic |
GTTGTAGCCGTGGAGTCTGT+TGG | 0.571948 | tig0020610:+36138 | Msa1383630:CDS |
GCGGAGTACAGTGACTTCAC+AGG | 0.572690 | tig0020610:+35011 | Msa1383630:CDS |
TTGGCTCAGTTGGTAAGGAA+CGG | 0.573450 | tig0020610:+38422 | Msa1383630:three_prime_UTR |
TAAGTTAACAACTGAAGCCA+TGG | 0.574043 | tig0020610:-38208 | None:intergenic |
ACCATCCTCACATCAGCAGC+GGG | 0.575616 | tig0020610:-38478 | None:intergenic |
TAAACCTGTTGTTAGAAGCA+GGG | 0.578456 | tig0020610:-35073 | None:intergenic |
TCAATGCAATTATGATAGCA+AGG | 0.581523 | tig0020610:-38160 | None:intergenic |
CCAACTGAGCCAACGTGTGT+TGG | 0.585359 | tig0020610:-38412 | None:intergenic |
GCTCAAGTTTCTGAAGTCAA+AGG | 0.586109 | tig0020610:+36430 | Msa1383630:CDS |
TAAGCGCCCTTTCGGTCCGG+AGG | 0.593146 | tig0020610:+38529 | Msa1383630:three_prime_UTR |
CCACATCTTTCTCCTCAACT+GGG | 0.594648 | tig0020610:-38108 | None:intergenic |
TTCGGCTCCGGTCACCACCA+GGG | 0.595826 | tig0020610:-38562 | None:intergenic |
TCCCGCTGCTGATGTGAGGA+TGG | 0.597281 | tig0020610:+38477 | Msa1383630:three_prime_UTR |
TGCTGATGTGAGGATGGTGT+TGG | 0.599666 | tig0020610:+38483 | Msa1383630:three_prime_UTR |
TGTGAATTGTGATCATTCAT+GGG | 0.599877 | tig0020610:+34939 | Msa1383630:exon |
TTGTCTACCAACAGACTCCA+CGG | 0.608206 | tig0020610:-36145 | None:intergenic |
TCGTGGTACCGTGATTCTTG+CGG | 0.609688 | tig0020610:+34992 | Msa1383630:CDS |
ACTGTACTCCGCAAGAATCA+CGG | 0.610685 | tig0020610:-35000 | None:intergenic |
AGAATCTAACCTGAGAGCGA+AGG | 0.618405 | tig0020610:-37561 | None:intergenic |
GAAGGGAAGTGAATAAGGTG+TGG | 0.619277 | tig0020610:+38359 | Msa1383630:three_prime_UTR |
GCAGCAGATTCAATAGAAGA+GGG | 0.624397 | tig0020610:-34909 | None:intergenic |
CGATTCCCGCTGCTGATGTG+AGG | 0.625265 | tig0020610:+38473 | Msa1383630:three_prime_UTR |
GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | tig0020610:+38083 | Msa1383630:CDS |
GACCGAAAGGGCGCTTACAG+AGG | 0.626244 | tig0020610:-38523 | None:intergenic |
CACCATCCTCACATCAGCAG+CGG | 0.632218 | tig0020610:-38479 | None:intergenic |
AGGAACGGGCCACTTCCCCT+CGG | 0.634180 | tig0020610:+38437 | Msa1383630:three_prime_UTR |
AGCTTACTGTGTTGTAGCCG+TGG | 0.638922 | tig0020610:+36128 | Msa1383630:intron |
ATTATCGACGAGGAAGCTGA+AGG | 0.649726 | tig0020610:-35117 | None:intergenic |
TCGAACACACAACCTTCCGA+GGG | 0.650477 | tig0020610:-38453 | None:intergenic |
GAGGCCTGCCCTGACCCTGG+TGG | 0.664380 | tig0020610:+38548 | Msa1383630:three_prime_UTR |
CCCAGTTGAGGAGAAAGATG+TGG | 0.669727 | tig0020610:+38108 | Msa1383630:CDS |
GGAGCAAATGCAATATTGTG+TGG | 0.673674 | tig0020610:+36369 | Msa1383630:CDS |
AAGACACTGTAAAGCAATGG+TGG | 0.700756 | tig0020610:-35042 | None:intergenic |
ATATTGTGTGGAACATCCGG+AGG | 0.702619 | tig0020610:+36381 | Msa1383630:CDS |
TACTGAATCCATTATCGACG+AGG | 0.708046 | tig0020610:-35127 | None:intergenic |
TATGATGGAAAATATCGACA+AGG | 0.735916 | tig0020610:+36456 | Msa1383630:CDS |
CGAACACACAACCTTCCGAG+GGG | 0.760573 | tig0020610:-38452 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTACAAAAAGTTT+AGG | - | tig0020610:38592-38611 | None:intergenic | 10.0% |
!!! | TTTATTTTTTGGAAAAGAAA+TGG | - | tig0020610:34876-34895 | None:intergenic | 15.0% |
!! | TTGAACAAAAAATTATTCAA+GGG | - | tig0020610:35205-35224 | None:intergenic | 15.0% |
!!! | AAGAAAAAATCTCATATTTT+TGG | - | tig0020610:35392-35411 | None:intergenic | 15.0% |
!! | ATTGAAAAAAACAAAATGTA+AGG | - | tig0020610:35854-35873 | None:intergenic | 15.0% |
!!! | TCATAAATTTTAAGATAAGA+GGG | - | tig0020610:36007-36026 | None:intergenic | 15.0% |
!!! | ATCATAAATTTTAAGATAAG+AGG | - | tig0020610:36008-36027 | None:intergenic | 15.0% |
!!! | TTCATCTACATATATTTTTT+TGG | + | tig0020610:36037-36056 | Msa1383630:intron | 15.0% |
!!! | GATGATTTTAATAAAAGATA+TGG | + | tig0020610:36198-36217 | Msa1383630:CDS | 15.0% |
!! | AAATTTCATATAGTCATAAA+TGG | - | tig0020610:37176-37195 | None:intergenic | 15.0% |
!!! | TATTATTATATGTTATTTGC+AGG | + | tig0020610:37489-37508 | Msa1383630:intron | 15.0% |
!! | AAAATGATGAAGAAATGAAA+AGG | - | tig0020610:34853-34872 | None:intergenic | 20.0% |
!! | GTTGAACAAAAAATTATTCA+AGG | - | tig0020610:35206-35225 | None:intergenic | 20.0% |
!!! | TTAAACTGAACATTTTTACT+AGG | + | tig0020610:35243-35262 | Msa1383630:intron | 20.0% |
!!! | TAAACTGAACATTTTTACTA+GGG | + | tig0020610:35244-35263 | Msa1383630:intron | 20.0% |
!! | AAATCTAACATAATTAACGT+AGG | + | tig0020610:35363-35382 | Msa1383630:intron | 20.0% |
!!! | TAATCTGATTTTATGAATTG+AGG | - | tig0020610:35783-35802 | None:intergenic | 20.0% |
!! | ATAAGTAATTTAAGCAAGTA+AGG | - | tig0020610:35962-35981 | None:intergenic | 20.0% |
!! | TTACTTGCTTAAATTACTTA+TGG | + | tig0020610:35961-35980 | Msa1383630:intron | 20.0% |
!!! | GATTTTAATAAAAGATATGG+TGG | + | tig0020610:36201-36220 | Msa1383630:CDS | 20.0% |
!! | AAAAGTCTTAACAAAGAATT+TGG | + | tig0020610:36249-36268 | Msa1383630:CDS | 20.0% |
!! | AAAGTCTTAACAAAGAATTT+GGG | + | tig0020610:36250-36269 | Msa1383630:CDS | 20.0% |
!!! | TAGATTTTAAGATTTATGTC+GGG | - | tig0020610:36603-36622 | None:intergenic | 20.0% |
!!! | CTAGATTTTAAGATTTATGT+CGG | - | tig0020610:36604-36623 | None:intergenic | 20.0% |
!!! | ATTGACTCATATCATAAAAA+TGG | - | tig0020610:36766-36785 | None:intergenic | 20.0% |
!!! | CTTTTATGTATTTATAGAAC+CGG | - | tig0020610:36830-36849 | None:intergenic | 20.0% |
!! | CAAAGAAATCATCAATTATA+TGG | - | tig0020610:36939-36958 | None:intergenic | 20.0% |
!! | TCAGTTGTTTAACATTATTA+TGG | + | tig0020610:37093-37112 | Msa1383630:intron | 20.0% |
!!! | TATTTTTGTAGAATCGATAT+AGG | - | tig0020610:37273-37292 | None:intergenic | 20.0% |
!! | GAATTTCATTTAATATCATG+TGG | + | tig0020610:37456-37475 | Msa1383630:intron | 20.0% |
!! | ATTTGCATATATAAAACTGT+TGG | - | tig0020610:37625-37644 | None:intergenic | 20.0% |
!! | AATTGAATTAGAGATGATTA+TGG | + | tig0020610:37642-37661 | Msa1383630:intron | 20.0% |
!!! | ATTCCAATGTTTTATAGTTT+TGG | + | tig0020610:37828-37847 | Msa1383630:intron | 20.0% |
!! | TCCATTAAATTCTGAATTAT+TGG | + | tig0020610:38030-38049 | Msa1383630:intron | 20.0% |
!! | TCCAATAATTCAGAATTTAA+TGG | - | tig0020610:38034-38053 | None:intergenic | 20.0% |
!! | TTTGTTTATTAGACATTCAA+TGG | + | tig0020610:38315-38334 | Msa1383630:three_prime_UTR | 20.0% |
!!! | TTTTTTACAAAAAGTTTAGG+TGG | - | tig0020610:38589-38608 | None:intergenic | 20.0% |
!! | AAACTGTATTGTTTCATTTA+TGG | + | tig0020610:38611-38630 | Msa1383630:three_prime_UTR | 20.0% |
!!! | TAGGATATCACAGTTTTATA+TGG | + | tig0020610:35275-35294 | Msa1383630:intron | 25.0% |
! | TTTAGACAAAACCAAAAACA+AGG | + | tig0020610:35314-35333 | Msa1383630:intron | 25.0% |
!!! | TTTTAATTGTGATGATGAAG+TGG | + | tig0020610:35445-35464 | Msa1383630:intron | 25.0% |
!!! | TGTATTTTGAGCAATGTATA+AGG | + | tig0020610:35509-35528 | Msa1383630:intron | 25.0% |
! | AAAATTATCCAATGATGCTT+TGG | + | tig0020610:35696-35715 | Msa1383630:intron | 25.0% |
!! | TTTTATTAGTGAGCTTCAAA+TGG | - | tig0020610:35888-35907 | None:intergenic | 25.0% |
! | AAACAAGTTCAACAGAAAAA+AGG | - | tig0020610:36088-36107 | None:intergenic | 25.0% |
! | TTTAATAAAAGATATGGTGG+AGG | + | tig0020610:36204-36223 | Msa1383630:CDS | 25.0% |
! | TTCATAGCAGTATAAAAAAC+AGG | + | tig0020610:36659-36678 | Msa1383630:intron | 25.0% |
!!! | GATATGAGTCAATTTTAACT+CGG | + | tig0020610:36773-36792 | Msa1383630:intron | 25.0% |
! | AACTGAGACAAAATACTTAA+AGG | - | tig0020610:37079-37098 | None:intergenic | 25.0% |
! | AAAATCGCAATCAAAATTGA+TGG | - | tig0020610:37237-37256 | None:intergenic | 25.0% |
!!! | TCGATTTTGTTATTTCCTTA+TGG | + | tig0020610:37335-37354 | Msa1383630:intron | 25.0% |
!! | AATGAAATTCTAGAGACAAT+TGG | - | tig0020610:37446-37465 | None:intergenic | 25.0% |
! | TTATTTGCAGGTTATTGATA+GGG | + | tig0020610:37501-37520 | Msa1383630:intron | 25.0% |
!! | CATATATAAAACTGTTGGTT+TGG | - | tig0020610:37620-37639 | None:intergenic | 25.0% |
! | CATCCAAAACTATAAAACAT+TGG | - | tig0020610:37834-37853 | None:intergenic | 25.0% |
!!! | CAATGTTTTATAGTTTTGGA+TGG | + | tig0020610:37832-37851 | Msa1383630:intron | 25.0% |
! | AAAACTAGATGTGAGAATTT+GGG | - | tig0020610:37910-37929 | None:intergenic | 25.0% |
! | GTTGTGGTTATTTATTATCT+AGG | + | tig0020610:37977-37996 | Msa1383630:intron | 25.0% |
! | TATTGGAATGTCAATTGAAA+TGG | + | tig0020610:38047-38066 | Msa1383630:intron | 25.0% |
! | AGAATTGTCACTACATATAT+TGG | + | tig0020610:38245-38264 | Msa1383630:three_prime_UTR | 25.0% |
! | ATGTAAAAAACAGTTAGGAA+GGG | + | tig0020610:38342-38361 | Msa1383630:three_prime_UTR | 25.0% |
TTGTGAATTGTGATCATTCA+TGG | + | tig0020610:34938-34957 | Msa1383630:exon | 30.0% | |
TGTGAATTGTGATCATTCAT+GGG | + | tig0020610:34939-34958 | Msa1383630:exon | 30.0% | |
! | ATCATTGATCTATAGCTTTG+TGG | + | tig0020610:34968-34987 | Msa1383630:CDS | 30.0% |
! | AAAAATCTCCAAAGCATCAT+TGG | - | tig0020610:35707-35726 | None:intergenic | 30.0% |
! | TGAACTTGTTTCATGATTAG+TGG | + | tig0020610:36097-36116 | Msa1383630:intron | 30.0% |
ATACGTTCAAGAAAAGCTAT+TGG | - | tig0020610:36174-36193 | None:intergenic | 30.0% | |
! | AGCTTTTCTTGAACGTATTA+AGG | + | tig0020610:36176-36195 | Msa1383630:CDS | 30.0% |
! | TATGATGGAAAATATCGACA+AGG | + | tig0020610:36456-36475 | Msa1383630:CDS | 30.0% |
!!! | AAATGTAGGTGCTATTTTGT+TGG | - | tig0020610:36522-36541 | None:intergenic | 30.0% |
! | GGTTCTTCAATCTAAAATGT+AGG | - | tig0020610:36536-36555 | None:intergenic | 30.0% |
TTTAGATTGAAGAACCGAAT+CGG | + | tig0020610:36540-36559 | Msa1383630:intron | 30.0% | |
! | ATAACATGTAGATACCGATT+CGG | - | tig0020610:36557-36576 | None:intergenic | 30.0% |
TATTTATAGAACCGGATCAT+AGG | - | tig0020610:36822-36841 | None:intergenic | 30.0% | |
! | TTTTATTCTTTCACACCACA+CGG | + | tig0020610:36860-36879 | Msa1383630:intron | 30.0% |
! | TCTTTTGCCTTGAAACTTAA+TGG | + | tig0020610:37005-37024 | Msa1383630:intron | 30.0% |
TAAGTGACCATTAAGTTTCA+AGG | - | tig0020610:37015-37034 | None:intergenic | 30.0% | |
AAATATTTCGTCAGACATGT+AGG | + | tig0020610:37048-37067 | Msa1383630:intron | 30.0% | |
TATGGCTACTAAAGAATATC+TGG | + | tig0020610:37111-37130 | Msa1383630:intron | 30.0% | |
AAAATCGCAATCAAAATCGA+AGG | - | tig0020610:37308-37327 | None:intergenic | 30.0% | |
GTTATTTGCAGGTTATTGAT+AGG | + | tig0020610:37500-37519 | Msa1383630:intron | 30.0% | |
TATTTGCAGGTTATTGATAG+GGG | + | tig0020610:37502-37521 | Msa1383630:intron | 30.0% | |
! | TTGTTTGGTTTAAATGTGAG+TGG | + | tig0020610:37749-37768 | Msa1383630:intron | 30.0% |
!!! | TATAGTTTTGGATGGAATTG+TGG | + | tig0020610:37840-37859 | Msa1383630:intron | 30.0% |
GAAAACTAGATGTGAGAATT+TGG | - | tig0020610:37911-37930 | None:intergenic | 30.0% | |
GAATGTCAATTGAAATGGTA+TGG | + | tig0020610:38052-38071 | Msa1383630:intron | 30.0% | |
TCAATGCAATTATGATAGCA+AGG | - | tig0020610:38163-38182 | None:intergenic | 30.0% | |
GCTTCATGTAAAAAACAGTT+AGG | + | tig0020610:38337-38356 | Msa1383630:three_prime_UTR | 30.0% | |
CATGTAAAAAACAGTTAGGA+AGG | + | tig0020610:38341-38360 | Msa1383630:three_prime_UTR | 30.0% | |
! | ACAAAAAGTTTAGGTGGATT+CGG | - | tig0020610:38583-38602 | None:intergenic | 30.0% |
TTGAAGACACTGTAAAGCAA+TGG | - | tig0020610:35048-35067 | None:intergenic | 35.0% | |
TAAACCTGTTGTTAGAAGCA+GGG | - | tig0020610:35076-35095 | None:intergenic | 35.0% | |
AGGTTTACTTACAACTGTGA+TGG | + | tig0020610:35089-35108 | Msa1383630:CDS | 35.0% | |
! | TTTTACTAGGGTTCGAACTT+AGG | + | tig0020610:35256-35275 | Msa1383630:intron | 35.0% |
!!! | GCACTTATGTACCTTGTTTT+TGG | - | tig0020610:35328-35347 | None:intergenic | 35.0% |
CATCCAATAATAGAAGTGGA+CGG | - | tig0020610:35472-35491 | None:intergenic | 35.0% | |
TGAGCAATGTATAAGGTCAA+TGG | + | tig0020610:35516-35535 | Msa1383630:intron | 35.0% | |
TAGGTGGAACAATAACTAGT+TGG | + | tig0020610:35554-35573 | Msa1383630:intron | 35.0% | |
! | ATGCTTTAGACCAAAGTTGA+AGG | + | tig0020610:36348-36367 | Msa1383630:intron | 35.0% |
TGAAGTCAAAGGAGTTATGA+TGG | + | tig0020610:36441-36460 | Msa1383630:CDS | 35.0% | |
GAAAATCCATGCAAAATCGT+AGG | + | tig0020610:36723-36742 | Msa1383630:intron | 35.0% | |
! | CAAAATCCTACGATTTTGCA+TGG | - | tig0020610:36732-36751 | None:intergenic | 35.0% |
! | GCAAAATCGTAGGATTTTGA+AGG | + | tig0020610:36733-36752 | Msa1383630:intron | 35.0% |
! | TTTCTTTGTGATTTGCATCG+AGG | + | tig0020610:36951-36970 | Msa1383630:intron | 35.0% |
CTAAAGAATATCTGGCATCT+AGG | + | tig0020610:37119-37138 | Msa1383630:intron | 35.0% | |
! | ATCTAGGCTTGAGTATTTTG+TGG | + | tig0020610:37135-37154 | Msa1383630:intron | 35.0% |
TTCAGGTCACAAAATCCATA+AGG | - | tig0020610:37353-37372 | None:intergenic | 35.0% | |
! | GACAGTAGGTTTTCAAAATC+GGG | - | tig0020610:37383-37402 | None:intergenic | 35.0% |
! | GGACAGTAGGTTTTCAAAAT+CGG | - | tig0020610:37384-37403 | None:intergenic | 35.0% |
!! | GATTTTGAAAACCTACTGTC+CGG | + | tig0020610:37383-37402 | Msa1383630:intron | 35.0% |
ACTCGAATGATGTCTTTGTT+TGG | + | tig0020610:37734-37753 | Msa1383630:intron | 35.0% | |
ATTGTGGTGTCTAAATCTCT+TGG | + | tig0020610:37856-37875 | Msa1383630:intron | 35.0% | |
!!! | GAGCTTAGCTTATTTTGTTG+TGG | + | tig0020610:37961-37980 | Msa1383630:intron | 35.0% |
TAAGTTAACAACTGAAGCCA+TGG | - | tig0020610:38211-38230 | None:intergenic | 35.0% | |
! | TTTTTATTGCCAACACACGT+TGG | + | tig0020610:38403-38422 | Msa1383630:three_prime_UTR | 35.0% |
AGATATAGAGAGAGAGAGAG+AGG | - | tig0020610:34810-34829 | None:intergenic | 40.0% | |
GCAGCAGATTCAATAGAAGA+GGG | - | tig0020610:34912-34931 | None:intergenic | 40.0% | |
TGCAGCAGATTCAATAGAAG+AGG | - | tig0020610:34913-34932 | None:intergenic | 40.0% | |
AAGACACTGTAAAGCAATGG+TGG | - | tig0020610:35045-35064 | None:intergenic | 40.0% | |
GTAAACCTGTTGTTAGAAGC+AGG | - | tig0020610:35077-35096 | None:intergenic | 40.0% | |
TACTGAATCCATTATCGACG+AGG | - | tig0020610:35130-35149 | None:intergenic | 40.0% | |
CGTCCACTTCTATTATTGGA+TGG | + | tig0020610:35470-35489 | Msa1383630:intron | 40.0% | |
CCACCATCCAATAATAGAAG+TGG | - | tig0020610:35476-35495 | None:intergenic | 40.0% | |
CCACTTCTATTATTGGATGG+TGG | + | tig0020610:35473-35492 | Msa1383630:intron | 40.0% | |
TAAGGTCAATGGTCCAAACT+TGG | + | tig0020610:35527-35546 | Msa1383630:intron | 40.0% | |
ATGGTCCAAACTTGGCTAAT+AGG | + | tig0020610:35535-35554 | Msa1383630:intron | 40.0% | |
TTCCACCTATTAGCCAAGTT+TGG | - | tig0020610:35543-35562 | None:intergenic | 40.0% | |
TGCATTTGCTCCTTCAACTT+TGG | - | tig0020610:36361-36380 | None:intergenic | 40.0% | |
GGAGCAAATGCAATATTGTG+TGG | + | tig0020610:36369-36388 | Msa1383630:CDS | 40.0% | |
GCAATATTGTGTGGAACATC+CGG | + | tig0020610:36378-36397 | Msa1383630:CDS | 40.0% | |
!! | GCTCAAGTTTCTGAAGTCAA+AGG | + | tig0020610:36430-36449 | Msa1383630:CDS | 40.0% |
! | CAAAATCGGGATTTAGCTTC+AGG | - | tig0020610:37370-37389 | None:intergenic | 40.0% |
! | GCAAAGCACCTAAACATACA+CGG | - | tig0020610:37412-37431 | None:intergenic | 40.0% |
TCGAATTCCAGTGATCTCTA+AGG | - | tig0020610:37943-37962 | None:intergenic | 40.0% | |
! | TTGAAATGGTATGGCTTTGC+AGG | + | tig0020610:38061-38080 | Msa1383630:intron | 40.0% |
ATTGTTCTTTCTGTGTGCCA+TGG | + | tig0020610:38191-38210 | Msa1383630:CDS | 40.0% | |
GTTAGGAAGGGAAGTGAATA+AGG | + | tig0020610:38354-38373 | Msa1383630:three_prime_UTR | 40.0% | |
! | GAGAGAGGTGGTGTCAAATT+TGG | - | tig0020610:34795-34814 | None:intergenic | 45.0% |
TATAGAGAGAGAGAGAGAGG+TGG | - | tig0020610:34807-34826 | None:intergenic | 45.0% | |
!! | ATCTATAGCTTTGTGGCTCG+TGG | + | tig0020610:34975-34994 | Msa1383630:CDS | 45.0% |
ACTGTACTCCGCAAGAATCA+CGG | - | tig0020610:35003-35022 | None:intergenic | 45.0% | |
AACTCCCTGCTTCTAACAAC+AGG | + | tig0020610:35069-35088 | Msa1383630:CDS | 45.0% | |
ATTATCGACGAGGAAGCTGA+AGG | - | tig0020610:35120-35139 | None:intergenic | 45.0% | |
TTCAGCTTCCTCGTCGATAA+TGG | + | tig0020610:35119-35138 | Msa1383630:CDS | 45.0% | |
GGACCGTCCACTTCTATTAT+TGG | + | tig0020610:35466-35485 | Msa1383630:intron | 45.0% | |
GTCCAAACTTGGCTAATAGG+TGG | + | tig0020610:35538-35557 | Msa1383630:intron | 45.0% | |
TTGTCTACCAACAGACTCCA+CGG | - | tig0020610:36148-36167 | None:intergenic | 45.0% | |
ATATTGTGTGGAACATCCGG+AGG | + | tig0020610:36381-36400 | Msa1383630:CDS | 45.0% | |
!! | GCAAGTTTGCTAACTTCCTC+CGG | - | tig0020610:36400-36419 | None:intergenic | 45.0% |
ACTCGGTTCATCAATTGACC+TGG | + | tig0020610:36790-36809 | Msa1383630:intron | 45.0% | |
! | CCTGGTTTGTACCTATGATC+CGG | + | tig0020610:36808-36827 | Msa1383630:intron | 45.0% |
TCTGCACAAGAGATTGACGA+AGG | + | tig0020610:36885-36904 | Msa1383630:intron | 45.0% | |
! | AGGCGAACGTGTTGATATGA+TGG | + | tig0020610:36905-36924 | Msa1383630:intron | 45.0% |
ACCTAAACATACACGGACAC+CGG | - | tig0020610:37405-37424 | None:intergenic | 45.0% | |
TGATAGGGGAGAGAAGATTG+AGG | + | tig0020610:37516-37535 | Msa1383630:CDS | 45.0% | |
!! | AGAGAAGATTGAGGTGTTGG+TGG | + | tig0020610:37525-37544 | Msa1383630:CDS | 45.0% |
AGAATCTAACCTGAGAGCGA+AGG | - | tig0020610:37564-37583 | None:intergenic | 45.0% | |
GTTGATGCCTTAGAGATCAC+TGG | + | tig0020610:37933-37952 | Msa1383630:intron | 45.0% | |
CTTTGCAGGCACAAGATTTC+AGG | + | tig0020610:38075-38094 | Msa1383630:intron | 45.0% | |
CCACATCTTTCTCCTCAACT+GGG | - | tig0020610:38111-38130 | None:intergenic | 45.0% | |
ACCACATCTTTCTCCTCAAC+TGG | - | tig0020610:38112-38131 | None:intergenic | 45.0% | |
GAAGGGAAGTGAATAAGGTG+TGG | + | tig0020610:38359-38378 | Msa1383630:three_prime_UTR | 45.0% | |
GGAAGTGAATAAGGTGTGGT+AGG | + | tig0020610:38363-38382 | Msa1383630:three_prime_UTR | 45.0% | |
!! | TTGGCTCAGTTGGTAAGGAA+CGG | + | tig0020610:38422-38441 | Msa1383630:three_prime_UTR | 45.0% |
!!! | AGATTTTTTATTTTATTTTT+TGG | - | tig0020610:34887-34906 | None:intergenic | 5.0% |
!! | TATATTTAATTAATGTTTAA+TGG | + | tig0020610:35585-35604 | Msa1383630:intron | 5.0% |
!!! | TAAAAATAAAATATGATTTT+AGG | + | tig0020610:35663-35682 | Msa1383630:intron | 5.0% |
TCGTGGTACCGTGATTCTTG+CGG | + | tig0020610:34992-35011 | Msa1383630:CDS | 50.0% | |
AGCTTACTGTGTTGTAGCCG+TGG | + | tig0020610:36128-36147 | Msa1383630:intron | 50.0% | |
CCGGATCATAGGTACAAACC+AGG | - | tig0020610:36811-36830 | None:intergenic | 50.0% | |
TCCGGTGTCCGTGTATGTTT+AGG | + | tig0020610:37401-37420 | Msa1383630:intron | 50.0% | |
GGGAGAGAAGATTGAGGTGT+TGG | + | tig0020610:37522-37541 | Msa1383630:CDS | 50.0% | |
AACTGAGAACCTTCGCTCTC+AGG | + | tig0020610:37552-37571 | Msa1383630:CDS | 50.0% | |
TTGGGAGCAACTCGATGATC+AGG | - | tig0020610:37892-37911 | None:intergenic | 50.0% | |
GCACAAGATTTCAGGCAGCA+GGG | + | tig0020610:38083-38102 | Msa1383630:CDS | 50.0% | |
CCCAGTTGAGGAGAAAGATG+TGG | + | tig0020610:38108-38127 | Msa1383630:CDS | 50.0% | |
!! | ACACGTTGGCTCAGTTGGTA+AGG | + | tig0020610:38417-38436 | Msa1383630:three_prime_UTR | 50.0% |
!! | TGGCTCAGTTGGTAAGGAAC+GGG | + | tig0020610:38423-38442 | Msa1383630:three_prime_UTR | 50.0% |
TCGAACACACAACCTTCCGA+GGG | - | tig0020610:38456-38475 | None:intergenic | 50.0% | |
ATCGAACACACAACCTTCCG+AGG | - | tig0020610:38457-38476 | None:intergenic | 50.0% | |
TGCTGATGTGAGGATGGTGT+TGG | + | tig0020610:38483-38502 | Msa1383630:three_prime_UTR | 50.0% | |
! | TGATGTGAGGATGGTGTTGG+TGG | + | tig0020610:38486-38505 | Msa1383630:three_prime_UTR | 50.0% |
!! | GATGTGAGGATGGTGTTGGT+GGG | + | tig0020610:38487-38506 | Msa1383630:three_prime_UTR | 50.0% |
TACCTCTGTAAGCGCCCTTT+CGG | + | tig0020610:38521-38540 | Msa1383630:three_prime_UTR | 50.0% | |
! | AGTTTAGGTGGATTCGGCTC+CGG | - | tig0020610:38577-38596 | None:intergenic | 50.0% |
GCGGAGTACAGTGACTTCAC+AGG | + | tig0020610:35011-35030 | Msa1383630:CDS | 55.0% | |
GTTGTAGCCGTGGAGTCTGT+TGG | + | tig0020610:36138-36157 | Msa1383630:CDS | 55.0% | |
TCTCTTGTGCAGAGACCGTG+TGG | - | tig0020610:36878-36897 | None:intergenic | 55.0% | |
ATACACGGACACCGGACAGT+AGG | - | tig0020610:37397-37416 | None:intergenic | 55.0% | |
GGCACAAGATTTCAGGCAGC+AGG | + | tig0020610:38082-38101 | Msa1383630:intron | 55.0% | |
CCAACTGAGCCAACGTGTGT+TGG | - | tig0020610:38415-38434 | None:intergenic | 55.0% | |
!! | CCAACACACGTTGGCTCAGT+TGG | + | tig0020610:38412-38431 | Msa1383630:three_prime_UTR | 55.0% |
CGAACACACAACCTTCCGAG+GGG | - | tig0020610:38455-38474 | None:intergenic | 55.0% | |
ACCATCCTCACATCAGCAGC+GGG | - | tig0020610:38481-38500 | None:intergenic | 55.0% | |
CACCATCCTCACATCAGCAG+CGG | - | tig0020610:38482-38501 | None:intergenic | 55.0% | |
CACAACCTTCCGAGGGGAAG+TGG | - | tig0020610:38449-38468 | None:intergenic | 60.0% | |
CGATTCCCGCTGCTGATGTG+AGG | + | tig0020610:38473-38492 | Msa1383630:three_prime_UTR | 60.0% | |
TCCCGCTGCTGATGTGAGGA+TGG | + | tig0020610:38477-38496 | Msa1383630:three_prime_UTR | 60.0% | |
!! | GACCGAAAGGGCGCTTACAG+AGG | - | tig0020610:38526-38545 | None:intergenic | 60.0% |
CTGTAAGCGCCCTTTCGGTC+CGG | + | tig0020610:38526-38545 | Msa1383630:three_prime_UTR | 60.0% | |
GGCAGCAGGGAACCCAGTTG+AGG | + | tig0020610:38096-38115 | Msa1383630:CDS | 65.0% | |
AGGAACGGGCCACTTCCCCT+CGG | + | tig0020610:38437-38456 | Msa1383630:three_prime_UTR | 65.0% | |
TAAGCGCCCTTTCGGTCCGG+AGG | + | tig0020610:38529-38548 | Msa1383630:three_prime_UTR | 65.0% | |
TCCGGTCACCACCAGGGTCA+GGG | - | tig0020610:38559-38578 | None:intergenic | 65.0% | |
TTCGGCTCCGGTCACCACCA+GGG | - | tig0020610:38565-38584 | None:intergenic | 65.0% | |
ATTCGGCTCCGGTCACCACC+AGG | - | tig0020610:38566-38585 | None:intergenic | 65.0% | |
ACGGGCCACTTCCCCTCGGA+AGG | + | tig0020610:38441-38460 | Msa1383630:three_prime_UTR | 70.0% | |
GGCAGGCCTCCGGACCGAAA+GGG | - | tig0020610:38538-38557 | None:intergenic | 70.0% | |
GTCACCACCAGGGTCAGGGC+AGG | - | tig0020610:38555-38574 | None:intergenic | 70.0% | |
! | GCCCTGACCCTGGTGGTGAC+CGG | + | tig0020610:38555-38574 | Msa1383630:three_prime_UTR | 70.0% |
CTCCGGTCACCACCAGGGTC+AGG | - | tig0020610:38560-38579 | None:intergenic | 70.0% | |
GGGCAGGCCTCCGGACCGAA+AGG | - | tig0020610:38539-38558 | None:intergenic | 75.0% | |
CCAGGGTCAGGGCAGGCCTC+CGG | - | tig0020610:38548-38567 | None:intergenic | 75.0% | |
GAGGCCTGCCCTGACCCTGG+TGG | + | tig0020610:38548-38567 | Msa1383630:three_prime_UTR | 75.0% | |
! | CCGGAGGCCTGCCCTGACCC+TGG | + | tig0020610:38545-38564 | Msa1383630:three_prime_UTR | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0020610 | gene | 34792 | 38640 | 34792 | ID=Msa1383630;Name=Msa1383630 |
tig0020610 | mRNA | 34792 | 38640 | 34792 | ID=Msa1383630-mRNA-1;Parent=Msa1383630;Name=Msa1383630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=165|1|1|1|1|1|5|414|219 |
tig0020610 | exon | 34792 | 35146 | 34792 | ID=Msa1383630-mRNA-1:exon:8638;Parent=Msa1383630-mRNA-1 |
tig0020610 | exon | 36130 | 36271 | 36130 | ID=Msa1383630-mRNA-1:exon:8639;Parent=Msa1383630-mRNA-1 |
tig0020610 | exon | 36357 | 36477 | 36357 | ID=Msa1383630-mRNA-1:exon:8640;Parent=Msa1383630-mRNA-1 |
tig0020610 | exon | 37511 | 37573 | 37511 | ID=Msa1383630-mRNA-1:exon:8641;Parent=Msa1383630-mRNA-1 |
tig0020610 | exon | 38083 | 38640 | 38083 | ID=Msa1383630-mRNA-1:exon:8642;Parent=Msa1383630-mRNA-1 |
tig0020610 | five_prime_UTR | 34792 | 34956 | 34792 | ID=Msa1383630-mRNA-1:five_prime_utr;Parent=Msa1383630-mRNA-1 |
tig0020610 | CDS | 34957 | 35146 | 34957 | ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1 |
tig0020610 | CDS | 36130 | 36271 | 36130 | ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1 |
tig0020610 | CDS | 36357 | 36477 | 36357 | ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1 |
tig0020610 | CDS | 37511 | 37573 | 37511 | ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1 |
tig0020610 | CDS | 38083 | 38226 | 38083 | ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1 |
tig0020610 | three_prime_UTR | 38227 | 38640 | 38227 | ID=Msa1383630-mRNA-1:three_prime_utr;Parent=Msa1383630-mRNA-1 |
Gene Sequence |
Protein sequence |