AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1383630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383630 MtrunA17_Chr4g0010271 100.000 219 0 0 1 219 1 219 5.99e-166 456
Msa1383630 MtrunA17_Chr1g0169861 78.995 219 46 0 1 219 51 269 2.50e-138 388
Msa1383630 MtrunA17_Chr7g0237561 84.018 219 35 0 1 219 1 219 1.72e-129 363
Msa1383630 MtrunA17_Chr2g0296021 71.233 219 63 0 1 219 1 219 1.10e-122 346
Msa1383630 MtrunA17_Chr4g0043521 79.275 193 40 0 3 195 5 197 3.93e-121 342
Msa1383630 MtrunA17_Chr2g0291651 74.419 215 55 0 2 216 6 220 5.40e-115 327
Msa1383630 MtrunA17_Chr7g0237521 75.385 195 48 0 1 195 1 195 1.39e-111 318
Msa1383630 MtrunA17_Chr1g0210521 56.303 238 85 1 1 219 1 238 7.10e-102 294
Msa1383630 MtrunA17_Chr4g0010211 95.370 108 5 0 64 171 3 110 1.90e-71 213
Msa1383630 MtrunA17_Chr1g0169851 69.178 146 30 1 57 187 8 153 4.04e-70 211
Msa1383630 MtrunA17_Chr5g0441741 39.151 212 126 3 6 216 3 212 1.50e-49 160
Msa1383630 MtrunA17_Chr4g0026121 36.279 215 134 3 5 218 2 214 4.33e-46 152
Msa1383630 MtrunA17_Chr4g0064371 33.180 217 136 5 6 216 3 216 6.54e-41 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383630 AT1G04760.2 80.365 219 43 0 1 219 1 219 2.25e-133 374
Msa1383630 AT1G04760.1 80.365 219 43 0 1 219 1 219 2.25e-133 374
Msa1383630 AT1G04750.1 83.105 219 37 0 1 219 1 219 3.29e-129 363
Msa1383630 AT2G32670.1 82.192 219 39 0 1 219 66 284 5.30e-129 365
Msa1383630 AT2G33120.1 83.105 219 37 0 1 219 1 219 1.24e-128 362
Msa1383630 AT2G33120.2 79.736 227 38 1 1 219 1 227 2.07e-125 354
Msa1383630 AT3G54300.3 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa1383630 AT3G54300.2 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa1383630 AT3G54300.1 56.723 238 84 2 1 219 1 238 8.02e-101 292
Msa1383630 AT2G33110.1 67.580 219 67 1 1 219 1 215 5.90e-97 281
Msa1383630 AT4G15780.1 70.391 179 52 1 1 178 1 179 2.49e-95 276
Msa1383630 AT2G33110.2 69.753 162 49 0 1 162 1 162 3.45e-85 251
Msa1383630 AT1G04750.2 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa1383630 AT1G04750.4 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa1383630 AT1G04750.3 84.397 141 22 0 79 219 1 141 3.06e-74 221
Msa1383630 AT5G11150.1 40.553 217 123 5 5 218 2 215 7.85e-53 169
Msa1383630 AT5G11150.2 40.553 217 123 5 5 218 2 215 1.45e-52 169
Msa1383630 AT5G22360.1 37.963 216 130 3 5 218 2 215 7.00e-51 164
Msa1383630 AT4G32150.1 38.498 213 128 3 5 216 2 212 2.37e-48 158
Msa1383630 AT2G25340.1 37.850 214 128 4 5 216 2 212 1.59e-43 145
Msa1383630 AT2G33120.3 88.372 86 10 0 134 219 52 137 3.87e-36 124
Msa1383630 AT3G24890.2 53.191 94 38 2 113 200 14 107 5.20e-25 95.5
Msa1383630 AT3G24890.1 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa1383630 AT3G24890.4 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa1383630 AT3G24890.3 53.125 64 26 1 113 176 14 73 2.18e-15 68.9
Msa1383630 AT3G24890.5 53.125 64 26 1 113 176 14 73 2.18e-15 68.9

Find 95 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGTATTGTTTCATTTA+TGG 0.065324 tig0020610:+38611 Msa1383630:three_prime_UTR
AAAAGTCTTAACAAAGAATT+TGG 0.112791 tig0020610:+36249 Msa1383630:CDS
CTTTGCAGGCACAAGATTTC+AGG 0.218031 tig0020610:+38075 Msa1383630:intron
GAGAGAGGTGGTGTCAAATT+TGG 0.233821 tig0020610:-34792 None:intergenic
AGAATTGTCACTACATATAT+TGG 0.236659 tig0020610:+38245 Msa1383630:three_prime_UTR
TTCAGCTTCCTCGTCGATAA+TGG 0.292725 tig0020610:+35119 Msa1383630:CDS
ACCACATCTTTCTCCTCAAC+TGG 0.295387 tig0020610:-38109 None:intergenic
GTTATTTGCAGGTTATTGAT+AGG 0.304636 tig0020610:+37500 Msa1383630:intron
GTTAGGAAGGGAAGTGAATA+AGG 0.319681 tig0020610:+38354 Msa1383630:three_prime_UTR
TGCATTTGCTCCTTCAACTT+TGG 0.326828 tig0020610:-36358 None:intergenic
ATACGTTCAAGAAAAGCTAT+TGG 0.353729 tig0020610:-36171 None:intergenic
CTCCGGTCACCACCAGGGTC+AGG 0.379723 tig0020610:-38557 None:intergenic
TACCTCTGTAAGCGCCCTTT+CGG 0.391076 tig0020610:+38521 Msa1383630:three_prime_UTR
ATCATTGATCTATAGCTTTG+TGG 0.397799 tig0020610:+34968 Msa1383630:CDS
AACTCCCTGCTTCTAACAAC+AGG 0.399581 tig0020610:+35069 Msa1383630:CDS
TTTGTTTATTAGACATTCAA+TGG 0.402021 tig0020610:+38315 Msa1383630:three_prime_UTR
AACTGAGAACCTTCGCTCTC+AGG 0.417900 tig0020610:+37552 Msa1383630:CDS
GCCCTGACCCTGGTGGTGAC+CGG 0.421928 tig0020610:+38555 Msa1383630:three_prime_UTR
GCAATATTGTGTGGAACATC+CGG 0.431593 tig0020610:+36378 Msa1383630:CDS
TTATTTGCAGGTTATTGATA+GGG 0.435162 tig0020610:+37501 Msa1383630:intron
GGCACAAGATTTCAGGCAGC+AGG 0.435566 tig0020610:+38082 Msa1383630:intron
GGGAGAGAAGATTGAGGTGT+TGG 0.441727 tig0020610:+37522 Msa1383630:CDS
ATTCGGCTCCGGTCACCACC+AGG 0.447582 tig0020610:-38563 None:intergenic
GCAAGTTTGCTAACTTCCTC+CGG 0.449150 tig0020610:-36397 None:intergenic
TTGTGAATTGTGATCATTCA+TGG 0.455075 tig0020610:+34938 Msa1383630:exon
GTAAACCTGTTGTTAGAAGC+AGG 0.458806 tig0020610:-35074 None:intergenic
TGAAGTCAAAGGAGTTATGA+TGG 0.459537 tig0020610:+36441 Msa1383630:CDS
CCAGGGTCAGGGCAGGCCTC+CGG 0.467838 tig0020610:-38545 None:intergenic
AGAGAAGATTGAGGTGTTGG+TGG 0.479742 tig0020610:+37525 Msa1383630:CDS
CTGTAAGCGCCCTTTCGGTC+CGG 0.482777 tig0020610:+38526 Msa1383630:three_prime_UTR
CACAACCTTCCGAGGGGAAG+TGG 0.483080 tig0020610:-38446 None:intergenic
CCGGAGGCCTGCCCTGACCC+TGG 0.483325 tig0020610:+38545 Msa1383630:three_prime_UTR
ATTGTTCTTTCTGTGTGCCA+TGG 0.487473 tig0020610:+38191 Msa1383630:CDS
ATCTATAGCTTTGTGGCTCG+TGG 0.490761 tig0020610:+34975 Msa1383630:CDS
AGTTTAGGTGGATTCGGCTC+CGG 0.492682 tig0020610:-38574 None:intergenic
TGGCTCAGTTGGTAAGGAAC+GGG 0.493822 tig0020610:+38423 Msa1383630:three_prime_UTR
ATGCTTTAGACCAAAGTTGA+AGG 0.496438 tig0020610:+36348 Msa1383630:intron
TGATAGGGGAGAGAAGATTG+AGG 0.498472 tig0020610:+37516 Msa1383630:CDS
AAAGTCTTAACAAAGAATTT+GGG 0.498770 tig0020610:+36250 Msa1383630:CDS
AAAATGATGAAGAAATGAAA+AGG 0.501975 tig0020610:-34850 None:intergenic
CCAACACACGTTGGCTCAGT+TGG 0.513561 tig0020610:+38412 Msa1383630:three_prime_UTR
GTCACCACCAGGGTCAGGGC+AGG 0.516535 tig0020610:-38552 None:intergenic
TATTTGCAGGTTATTGATAG+GGG 0.520975 tig0020610:+37502 Msa1383630:intron
GGAAGTGAATAAGGTGTGGT+AGG 0.525716 tig0020610:+38363 Msa1383630:three_prime_UTR
ACACGTTGGCTCAGTTGGTA+AGG 0.528013 tig0020610:+38417 Msa1383630:three_prime_UTR
TCCGGTCACCACCAGGGTCA+GGG 0.532476 tig0020610:-38556 None:intergenic
TGATGTGAGGATGGTGTTGG+TGG 0.538282 tig0020610:+38486 Msa1383630:three_prime_UTR
AGGTTTACTTACAACTGTGA+TGG 0.540715 tig0020610:+35089 Msa1383630:CDS
TTTAATAAAAGATATGGTGG+AGG 0.542291 tig0020610:+36204 Msa1383630:CDS
ATCGAACACACAACCTTCCG+AGG 0.552585 tig0020610:-38454 None:intergenic
GATGTGAGGATGGTGTTGGT+GGG 0.554623 tig0020610:+38487 Msa1383630:three_prime_UTR
GGGCAGGCCTCCGGACCGAA+AGG 0.557828 tig0020610:-38536 None:intergenic
TTGAAGACACTGTAAAGCAA+TGG 0.558595 tig0020610:-35045 None:intergenic
GGCAGGCCTCCGGACCGAAA+GGG 0.562834 tig0020610:-38535 None:intergenic
GGCAGCAGGGAACCCAGTTG+AGG 0.565308 tig0020610:+38096 Msa1383630:CDS
AGAGGTGGTGTCAAATTTGG+AGG 0.566987 tig0020610:-34789 None:intergenic
ACGGGCCACTTCCCCTCGGA+AGG 0.568566 tig0020610:+38441 Msa1383630:three_prime_UTR
TGCAGCAGATTCAATAGAAG+AGG 0.571940 tig0020610:-34910 None:intergenic
GTTGTAGCCGTGGAGTCTGT+TGG 0.571948 tig0020610:+36138 Msa1383630:CDS
GCGGAGTACAGTGACTTCAC+AGG 0.572690 tig0020610:+35011 Msa1383630:CDS
TTGGCTCAGTTGGTAAGGAA+CGG 0.573450 tig0020610:+38422 Msa1383630:three_prime_UTR
TAAGTTAACAACTGAAGCCA+TGG 0.574043 tig0020610:-38208 None:intergenic
ACCATCCTCACATCAGCAGC+GGG 0.575616 tig0020610:-38478 None:intergenic
TAAACCTGTTGTTAGAAGCA+GGG 0.578456 tig0020610:-35073 None:intergenic
TCAATGCAATTATGATAGCA+AGG 0.581523 tig0020610:-38160 None:intergenic
CCAACTGAGCCAACGTGTGT+TGG 0.585359 tig0020610:-38412 None:intergenic
GCTCAAGTTTCTGAAGTCAA+AGG 0.586109 tig0020610:+36430 Msa1383630:CDS
TAAGCGCCCTTTCGGTCCGG+AGG 0.593146 tig0020610:+38529 Msa1383630:three_prime_UTR
CCACATCTTTCTCCTCAACT+GGG 0.594648 tig0020610:-38108 None:intergenic
TTCGGCTCCGGTCACCACCA+GGG 0.595826 tig0020610:-38562 None:intergenic
TCCCGCTGCTGATGTGAGGA+TGG 0.597281 tig0020610:+38477 Msa1383630:three_prime_UTR
TGCTGATGTGAGGATGGTGT+TGG 0.599666 tig0020610:+38483 Msa1383630:three_prime_UTR
TGTGAATTGTGATCATTCAT+GGG 0.599877 tig0020610:+34939 Msa1383630:exon
TTGTCTACCAACAGACTCCA+CGG 0.608206 tig0020610:-36145 None:intergenic
TCGTGGTACCGTGATTCTTG+CGG 0.609688 tig0020610:+34992 Msa1383630:CDS
ACTGTACTCCGCAAGAATCA+CGG 0.610685 tig0020610:-35000 None:intergenic
AGAATCTAACCTGAGAGCGA+AGG 0.618405 tig0020610:-37561 None:intergenic
GAAGGGAAGTGAATAAGGTG+TGG 0.619277 tig0020610:+38359 Msa1383630:three_prime_UTR
GCAGCAGATTCAATAGAAGA+GGG 0.624397 tig0020610:-34909 None:intergenic
CGATTCCCGCTGCTGATGTG+AGG 0.625265 tig0020610:+38473 Msa1383630:three_prime_UTR
GCACAAGATTTCAGGCAGCA+GGG 0.625497 tig0020610:+38083 Msa1383630:CDS
GACCGAAAGGGCGCTTACAG+AGG 0.626244 tig0020610:-38523 None:intergenic
CACCATCCTCACATCAGCAG+CGG 0.632218 tig0020610:-38479 None:intergenic
AGGAACGGGCCACTTCCCCT+CGG 0.634180 tig0020610:+38437 Msa1383630:three_prime_UTR
AGCTTACTGTGTTGTAGCCG+TGG 0.638922 tig0020610:+36128 Msa1383630:intron
ATTATCGACGAGGAAGCTGA+AGG 0.649726 tig0020610:-35117 None:intergenic
TCGAACACACAACCTTCCGA+GGG 0.650477 tig0020610:-38453 None:intergenic
GAGGCCTGCCCTGACCCTGG+TGG 0.664380 tig0020610:+38548 Msa1383630:three_prime_UTR
CCCAGTTGAGGAGAAAGATG+TGG 0.669727 tig0020610:+38108 Msa1383630:CDS
GGAGCAAATGCAATATTGTG+TGG 0.673674 tig0020610:+36369 Msa1383630:CDS
AAGACACTGTAAAGCAATGG+TGG 0.700756 tig0020610:-35042 None:intergenic
ATATTGTGTGGAACATCCGG+AGG 0.702619 tig0020610:+36381 Msa1383630:CDS
TACTGAATCCATTATCGACG+AGG 0.708046 tig0020610:-35127 None:intergenic
TATGATGGAAAATATCGACA+AGG 0.735916 tig0020610:+36456 Msa1383630:CDS
CGAACACACAACCTTCCGAG+GGG 0.760573 tig0020610:-38452 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTACAAAAAGTTT+AGG - tig0020610:38592-38611 None:intergenic 10.0%
!!! TTTATTTTTTGGAAAAGAAA+TGG - tig0020610:34876-34895 None:intergenic 15.0%
!! TTGAACAAAAAATTATTCAA+GGG - tig0020610:35205-35224 None:intergenic 15.0%
!!! AAGAAAAAATCTCATATTTT+TGG - tig0020610:35392-35411 None:intergenic 15.0%
!! ATTGAAAAAAACAAAATGTA+AGG - tig0020610:35854-35873 None:intergenic 15.0%
!!! TCATAAATTTTAAGATAAGA+GGG - tig0020610:36007-36026 None:intergenic 15.0%
!!! ATCATAAATTTTAAGATAAG+AGG - tig0020610:36008-36027 None:intergenic 15.0%
!!! TTCATCTACATATATTTTTT+TGG + tig0020610:36037-36056 Msa1383630:intron 15.0%
!!! GATGATTTTAATAAAAGATA+TGG + tig0020610:36198-36217 Msa1383630:CDS 15.0%
!! AAATTTCATATAGTCATAAA+TGG - tig0020610:37176-37195 None:intergenic 15.0%
!!! TATTATTATATGTTATTTGC+AGG + tig0020610:37489-37508 Msa1383630:intron 15.0%
!! AAAATGATGAAGAAATGAAA+AGG - tig0020610:34853-34872 None:intergenic 20.0%
!! GTTGAACAAAAAATTATTCA+AGG - tig0020610:35206-35225 None:intergenic 20.0%
!!! TTAAACTGAACATTTTTACT+AGG + tig0020610:35243-35262 Msa1383630:intron 20.0%
!!! TAAACTGAACATTTTTACTA+GGG + tig0020610:35244-35263 Msa1383630:intron 20.0%
!! AAATCTAACATAATTAACGT+AGG + tig0020610:35363-35382 Msa1383630:intron 20.0%
!!! TAATCTGATTTTATGAATTG+AGG - tig0020610:35783-35802 None:intergenic 20.0%
!! ATAAGTAATTTAAGCAAGTA+AGG - tig0020610:35962-35981 None:intergenic 20.0%
!! TTACTTGCTTAAATTACTTA+TGG + tig0020610:35961-35980 Msa1383630:intron 20.0%
!!! GATTTTAATAAAAGATATGG+TGG + tig0020610:36201-36220 Msa1383630:CDS 20.0%
!! AAAAGTCTTAACAAAGAATT+TGG + tig0020610:36249-36268 Msa1383630:CDS 20.0%
!! AAAGTCTTAACAAAGAATTT+GGG + tig0020610:36250-36269 Msa1383630:CDS 20.0%
!!! TAGATTTTAAGATTTATGTC+GGG - tig0020610:36603-36622 None:intergenic 20.0%
!!! CTAGATTTTAAGATTTATGT+CGG - tig0020610:36604-36623 None:intergenic 20.0%
!!! ATTGACTCATATCATAAAAA+TGG - tig0020610:36766-36785 None:intergenic 20.0%
!!! CTTTTATGTATTTATAGAAC+CGG - tig0020610:36830-36849 None:intergenic 20.0%
!! CAAAGAAATCATCAATTATA+TGG - tig0020610:36939-36958 None:intergenic 20.0%
!! TCAGTTGTTTAACATTATTA+TGG + tig0020610:37093-37112 Msa1383630:intron 20.0%
!!! TATTTTTGTAGAATCGATAT+AGG - tig0020610:37273-37292 None:intergenic 20.0%
!! GAATTTCATTTAATATCATG+TGG + tig0020610:37456-37475 Msa1383630:intron 20.0%
!! ATTTGCATATATAAAACTGT+TGG - tig0020610:37625-37644 None:intergenic 20.0%
!! AATTGAATTAGAGATGATTA+TGG + tig0020610:37642-37661 Msa1383630:intron 20.0%
!!! ATTCCAATGTTTTATAGTTT+TGG + tig0020610:37828-37847 Msa1383630:intron 20.0%
!! TCCATTAAATTCTGAATTAT+TGG + tig0020610:38030-38049 Msa1383630:intron 20.0%
!! TCCAATAATTCAGAATTTAA+TGG - tig0020610:38034-38053 None:intergenic 20.0%
!! TTTGTTTATTAGACATTCAA+TGG + tig0020610:38315-38334 Msa1383630:three_prime_UTR 20.0%
!!! TTTTTTACAAAAAGTTTAGG+TGG - tig0020610:38589-38608 None:intergenic 20.0%
!! AAACTGTATTGTTTCATTTA+TGG + tig0020610:38611-38630 Msa1383630:three_prime_UTR 20.0%
!!! TAGGATATCACAGTTTTATA+TGG + tig0020610:35275-35294 Msa1383630:intron 25.0%
! TTTAGACAAAACCAAAAACA+AGG + tig0020610:35314-35333 Msa1383630:intron 25.0%
!!! TTTTAATTGTGATGATGAAG+TGG + tig0020610:35445-35464 Msa1383630:intron 25.0%
!!! TGTATTTTGAGCAATGTATA+AGG + tig0020610:35509-35528 Msa1383630:intron 25.0%
! AAAATTATCCAATGATGCTT+TGG + tig0020610:35696-35715 Msa1383630:intron 25.0%
!! TTTTATTAGTGAGCTTCAAA+TGG - tig0020610:35888-35907 None:intergenic 25.0%
! AAACAAGTTCAACAGAAAAA+AGG - tig0020610:36088-36107 None:intergenic 25.0%
! TTTAATAAAAGATATGGTGG+AGG + tig0020610:36204-36223 Msa1383630:CDS 25.0%
! TTCATAGCAGTATAAAAAAC+AGG + tig0020610:36659-36678 Msa1383630:intron 25.0%
!!! GATATGAGTCAATTTTAACT+CGG + tig0020610:36773-36792 Msa1383630:intron 25.0%
! AACTGAGACAAAATACTTAA+AGG - tig0020610:37079-37098 None:intergenic 25.0%
! AAAATCGCAATCAAAATTGA+TGG - tig0020610:37237-37256 None:intergenic 25.0%
!!! TCGATTTTGTTATTTCCTTA+TGG + tig0020610:37335-37354 Msa1383630:intron 25.0%
!! AATGAAATTCTAGAGACAAT+TGG - tig0020610:37446-37465 None:intergenic 25.0%
! TTATTTGCAGGTTATTGATA+GGG + tig0020610:37501-37520 Msa1383630:intron 25.0%
!! CATATATAAAACTGTTGGTT+TGG - tig0020610:37620-37639 None:intergenic 25.0%
! CATCCAAAACTATAAAACAT+TGG - tig0020610:37834-37853 None:intergenic 25.0%
!!! CAATGTTTTATAGTTTTGGA+TGG + tig0020610:37832-37851 Msa1383630:intron 25.0%
! AAAACTAGATGTGAGAATTT+GGG - tig0020610:37910-37929 None:intergenic 25.0%
! GTTGTGGTTATTTATTATCT+AGG + tig0020610:37977-37996 Msa1383630:intron 25.0%
! TATTGGAATGTCAATTGAAA+TGG + tig0020610:38047-38066 Msa1383630:intron 25.0%
! AGAATTGTCACTACATATAT+TGG + tig0020610:38245-38264 Msa1383630:three_prime_UTR 25.0%
! ATGTAAAAAACAGTTAGGAA+GGG + tig0020610:38342-38361 Msa1383630:three_prime_UTR 25.0%
TTGTGAATTGTGATCATTCA+TGG + tig0020610:34938-34957 Msa1383630:exon 30.0%
TGTGAATTGTGATCATTCAT+GGG + tig0020610:34939-34958 Msa1383630:exon 30.0%
! ATCATTGATCTATAGCTTTG+TGG + tig0020610:34968-34987 Msa1383630:CDS 30.0%
! AAAAATCTCCAAAGCATCAT+TGG - tig0020610:35707-35726 None:intergenic 30.0%
! TGAACTTGTTTCATGATTAG+TGG + tig0020610:36097-36116 Msa1383630:intron 30.0%
ATACGTTCAAGAAAAGCTAT+TGG - tig0020610:36174-36193 None:intergenic 30.0%
! AGCTTTTCTTGAACGTATTA+AGG + tig0020610:36176-36195 Msa1383630:CDS 30.0%
! TATGATGGAAAATATCGACA+AGG + tig0020610:36456-36475 Msa1383630:CDS 30.0%
!!! AAATGTAGGTGCTATTTTGT+TGG - tig0020610:36522-36541 None:intergenic 30.0%
! GGTTCTTCAATCTAAAATGT+AGG - tig0020610:36536-36555 None:intergenic 30.0%
TTTAGATTGAAGAACCGAAT+CGG + tig0020610:36540-36559 Msa1383630:intron 30.0%
! ATAACATGTAGATACCGATT+CGG - tig0020610:36557-36576 None:intergenic 30.0%
TATTTATAGAACCGGATCAT+AGG - tig0020610:36822-36841 None:intergenic 30.0%
! TTTTATTCTTTCACACCACA+CGG + tig0020610:36860-36879 Msa1383630:intron 30.0%
! TCTTTTGCCTTGAAACTTAA+TGG + tig0020610:37005-37024 Msa1383630:intron 30.0%
TAAGTGACCATTAAGTTTCA+AGG - tig0020610:37015-37034 None:intergenic 30.0%
AAATATTTCGTCAGACATGT+AGG + tig0020610:37048-37067 Msa1383630:intron 30.0%
TATGGCTACTAAAGAATATC+TGG + tig0020610:37111-37130 Msa1383630:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG - tig0020610:37308-37327 None:intergenic 30.0%
GTTATTTGCAGGTTATTGAT+AGG + tig0020610:37500-37519 Msa1383630:intron 30.0%
TATTTGCAGGTTATTGATAG+GGG + tig0020610:37502-37521 Msa1383630:intron 30.0%
! TTGTTTGGTTTAAATGTGAG+TGG + tig0020610:37749-37768 Msa1383630:intron 30.0%
!!! TATAGTTTTGGATGGAATTG+TGG + tig0020610:37840-37859 Msa1383630:intron 30.0%
GAAAACTAGATGTGAGAATT+TGG - tig0020610:37911-37930 None:intergenic 30.0%
GAATGTCAATTGAAATGGTA+TGG + tig0020610:38052-38071 Msa1383630:intron 30.0%
TCAATGCAATTATGATAGCA+AGG - tig0020610:38163-38182 None:intergenic 30.0%
GCTTCATGTAAAAAACAGTT+AGG + tig0020610:38337-38356 Msa1383630:three_prime_UTR 30.0%
CATGTAAAAAACAGTTAGGA+AGG + tig0020610:38341-38360 Msa1383630:three_prime_UTR 30.0%
! ACAAAAAGTTTAGGTGGATT+CGG - tig0020610:38583-38602 None:intergenic 30.0%
TTGAAGACACTGTAAAGCAA+TGG - tig0020610:35048-35067 None:intergenic 35.0%
TAAACCTGTTGTTAGAAGCA+GGG - tig0020610:35076-35095 None:intergenic 35.0%
AGGTTTACTTACAACTGTGA+TGG + tig0020610:35089-35108 Msa1383630:CDS 35.0%
! TTTTACTAGGGTTCGAACTT+AGG + tig0020610:35256-35275 Msa1383630:intron 35.0%
!!! GCACTTATGTACCTTGTTTT+TGG - tig0020610:35328-35347 None:intergenic 35.0%
CATCCAATAATAGAAGTGGA+CGG - tig0020610:35472-35491 None:intergenic 35.0%
TGAGCAATGTATAAGGTCAA+TGG + tig0020610:35516-35535 Msa1383630:intron 35.0%
TAGGTGGAACAATAACTAGT+TGG + tig0020610:35554-35573 Msa1383630:intron 35.0%
! ATGCTTTAGACCAAAGTTGA+AGG + tig0020610:36348-36367 Msa1383630:intron 35.0%
TGAAGTCAAAGGAGTTATGA+TGG + tig0020610:36441-36460 Msa1383630:CDS 35.0%
GAAAATCCATGCAAAATCGT+AGG + tig0020610:36723-36742 Msa1383630:intron 35.0%
! CAAAATCCTACGATTTTGCA+TGG - tig0020610:36732-36751 None:intergenic 35.0%
! GCAAAATCGTAGGATTTTGA+AGG + tig0020610:36733-36752 Msa1383630:intron 35.0%
! TTTCTTTGTGATTTGCATCG+AGG + tig0020610:36951-36970 Msa1383630:intron 35.0%
CTAAAGAATATCTGGCATCT+AGG + tig0020610:37119-37138 Msa1383630:intron 35.0%
! ATCTAGGCTTGAGTATTTTG+TGG + tig0020610:37135-37154 Msa1383630:intron 35.0%
TTCAGGTCACAAAATCCATA+AGG - tig0020610:37353-37372 None:intergenic 35.0%
! GACAGTAGGTTTTCAAAATC+GGG - tig0020610:37383-37402 None:intergenic 35.0%
! GGACAGTAGGTTTTCAAAAT+CGG - tig0020610:37384-37403 None:intergenic 35.0%
!! GATTTTGAAAACCTACTGTC+CGG + tig0020610:37383-37402 Msa1383630:intron 35.0%
ACTCGAATGATGTCTTTGTT+TGG + tig0020610:37734-37753 Msa1383630:intron 35.0%
ATTGTGGTGTCTAAATCTCT+TGG + tig0020610:37856-37875 Msa1383630:intron 35.0%
!!! GAGCTTAGCTTATTTTGTTG+TGG + tig0020610:37961-37980 Msa1383630:intron 35.0%
TAAGTTAACAACTGAAGCCA+TGG - tig0020610:38211-38230 None:intergenic 35.0%
! TTTTTATTGCCAACACACGT+TGG + tig0020610:38403-38422 Msa1383630:three_prime_UTR 35.0%
AGATATAGAGAGAGAGAGAG+AGG - tig0020610:34810-34829 None:intergenic 40.0%
GCAGCAGATTCAATAGAAGA+GGG - tig0020610:34912-34931 None:intergenic 40.0%
TGCAGCAGATTCAATAGAAG+AGG - tig0020610:34913-34932 None:intergenic 40.0%
AAGACACTGTAAAGCAATGG+TGG - tig0020610:35045-35064 None:intergenic 40.0%
GTAAACCTGTTGTTAGAAGC+AGG - tig0020610:35077-35096 None:intergenic 40.0%
TACTGAATCCATTATCGACG+AGG - tig0020610:35130-35149 None:intergenic 40.0%
CGTCCACTTCTATTATTGGA+TGG + tig0020610:35470-35489 Msa1383630:intron 40.0%
CCACCATCCAATAATAGAAG+TGG - tig0020610:35476-35495 None:intergenic 40.0%
CCACTTCTATTATTGGATGG+TGG + tig0020610:35473-35492 Msa1383630:intron 40.0%
TAAGGTCAATGGTCCAAACT+TGG + tig0020610:35527-35546 Msa1383630:intron 40.0%
ATGGTCCAAACTTGGCTAAT+AGG + tig0020610:35535-35554 Msa1383630:intron 40.0%
TTCCACCTATTAGCCAAGTT+TGG - tig0020610:35543-35562 None:intergenic 40.0%
TGCATTTGCTCCTTCAACTT+TGG - tig0020610:36361-36380 None:intergenic 40.0%
GGAGCAAATGCAATATTGTG+TGG + tig0020610:36369-36388 Msa1383630:CDS 40.0%
GCAATATTGTGTGGAACATC+CGG + tig0020610:36378-36397 Msa1383630:CDS 40.0%
!! GCTCAAGTTTCTGAAGTCAA+AGG + tig0020610:36430-36449 Msa1383630:CDS 40.0%
! CAAAATCGGGATTTAGCTTC+AGG - tig0020610:37370-37389 None:intergenic 40.0%
! GCAAAGCACCTAAACATACA+CGG - tig0020610:37412-37431 None:intergenic 40.0%
TCGAATTCCAGTGATCTCTA+AGG - tig0020610:37943-37962 None:intergenic 40.0%
! TTGAAATGGTATGGCTTTGC+AGG + tig0020610:38061-38080 Msa1383630:intron 40.0%
ATTGTTCTTTCTGTGTGCCA+TGG + tig0020610:38191-38210 Msa1383630:CDS 40.0%
GTTAGGAAGGGAAGTGAATA+AGG + tig0020610:38354-38373 Msa1383630:three_prime_UTR 40.0%
! GAGAGAGGTGGTGTCAAATT+TGG - tig0020610:34795-34814 None:intergenic 45.0%
TATAGAGAGAGAGAGAGAGG+TGG - tig0020610:34807-34826 None:intergenic 45.0%
!! ATCTATAGCTTTGTGGCTCG+TGG + tig0020610:34975-34994 Msa1383630:CDS 45.0%
ACTGTACTCCGCAAGAATCA+CGG - tig0020610:35003-35022 None:intergenic 45.0%
AACTCCCTGCTTCTAACAAC+AGG + tig0020610:35069-35088 Msa1383630:CDS 45.0%
ATTATCGACGAGGAAGCTGA+AGG - tig0020610:35120-35139 None:intergenic 45.0%
TTCAGCTTCCTCGTCGATAA+TGG + tig0020610:35119-35138 Msa1383630:CDS 45.0%
GGACCGTCCACTTCTATTAT+TGG + tig0020610:35466-35485 Msa1383630:intron 45.0%
GTCCAAACTTGGCTAATAGG+TGG + tig0020610:35538-35557 Msa1383630:intron 45.0%
TTGTCTACCAACAGACTCCA+CGG - tig0020610:36148-36167 None:intergenic 45.0%
ATATTGTGTGGAACATCCGG+AGG + tig0020610:36381-36400 Msa1383630:CDS 45.0%
!! GCAAGTTTGCTAACTTCCTC+CGG - tig0020610:36400-36419 None:intergenic 45.0%
ACTCGGTTCATCAATTGACC+TGG + tig0020610:36790-36809 Msa1383630:intron 45.0%
! CCTGGTTTGTACCTATGATC+CGG + tig0020610:36808-36827 Msa1383630:intron 45.0%
TCTGCACAAGAGATTGACGA+AGG + tig0020610:36885-36904 Msa1383630:intron 45.0%
! AGGCGAACGTGTTGATATGA+TGG + tig0020610:36905-36924 Msa1383630:intron 45.0%
ACCTAAACATACACGGACAC+CGG - tig0020610:37405-37424 None:intergenic 45.0%
TGATAGGGGAGAGAAGATTG+AGG + tig0020610:37516-37535 Msa1383630:CDS 45.0%
!! AGAGAAGATTGAGGTGTTGG+TGG + tig0020610:37525-37544 Msa1383630:CDS 45.0%
AGAATCTAACCTGAGAGCGA+AGG - tig0020610:37564-37583 None:intergenic 45.0%
GTTGATGCCTTAGAGATCAC+TGG + tig0020610:37933-37952 Msa1383630:intron 45.0%
CTTTGCAGGCACAAGATTTC+AGG + tig0020610:38075-38094 Msa1383630:intron 45.0%
CCACATCTTTCTCCTCAACT+GGG - tig0020610:38111-38130 None:intergenic 45.0%
ACCACATCTTTCTCCTCAAC+TGG - tig0020610:38112-38131 None:intergenic 45.0%
GAAGGGAAGTGAATAAGGTG+TGG + tig0020610:38359-38378 Msa1383630:three_prime_UTR 45.0%
GGAAGTGAATAAGGTGTGGT+AGG + tig0020610:38363-38382 Msa1383630:three_prime_UTR 45.0%
!! TTGGCTCAGTTGGTAAGGAA+CGG + tig0020610:38422-38441 Msa1383630:three_prime_UTR 45.0%
!!! AGATTTTTTATTTTATTTTT+TGG - tig0020610:34887-34906 None:intergenic 5.0%
!! TATATTTAATTAATGTTTAA+TGG + tig0020610:35585-35604 Msa1383630:intron 5.0%
!!! TAAAAATAAAATATGATTTT+AGG + tig0020610:35663-35682 Msa1383630:intron 5.0%
TCGTGGTACCGTGATTCTTG+CGG + tig0020610:34992-35011 Msa1383630:CDS 50.0%
AGCTTACTGTGTTGTAGCCG+TGG + tig0020610:36128-36147 Msa1383630:intron 50.0%
CCGGATCATAGGTACAAACC+AGG - tig0020610:36811-36830 None:intergenic 50.0%
TCCGGTGTCCGTGTATGTTT+AGG + tig0020610:37401-37420 Msa1383630:intron 50.0%
GGGAGAGAAGATTGAGGTGT+TGG + tig0020610:37522-37541 Msa1383630:CDS 50.0%
AACTGAGAACCTTCGCTCTC+AGG + tig0020610:37552-37571 Msa1383630:CDS 50.0%
TTGGGAGCAACTCGATGATC+AGG - tig0020610:37892-37911 None:intergenic 50.0%
GCACAAGATTTCAGGCAGCA+GGG + tig0020610:38083-38102 Msa1383630:CDS 50.0%
CCCAGTTGAGGAGAAAGATG+TGG + tig0020610:38108-38127 Msa1383630:CDS 50.0%
!! ACACGTTGGCTCAGTTGGTA+AGG + tig0020610:38417-38436 Msa1383630:three_prime_UTR 50.0%
!! TGGCTCAGTTGGTAAGGAAC+GGG + tig0020610:38423-38442 Msa1383630:three_prime_UTR 50.0%
TCGAACACACAACCTTCCGA+GGG - tig0020610:38456-38475 None:intergenic 50.0%
ATCGAACACACAACCTTCCG+AGG - tig0020610:38457-38476 None:intergenic 50.0%
TGCTGATGTGAGGATGGTGT+TGG + tig0020610:38483-38502 Msa1383630:three_prime_UTR 50.0%
! TGATGTGAGGATGGTGTTGG+TGG + tig0020610:38486-38505 Msa1383630:three_prime_UTR 50.0%
!! GATGTGAGGATGGTGTTGGT+GGG + tig0020610:38487-38506 Msa1383630:three_prime_UTR 50.0%
TACCTCTGTAAGCGCCCTTT+CGG + tig0020610:38521-38540 Msa1383630:three_prime_UTR 50.0%
! AGTTTAGGTGGATTCGGCTC+CGG - tig0020610:38577-38596 None:intergenic 50.0%
GCGGAGTACAGTGACTTCAC+AGG + tig0020610:35011-35030 Msa1383630:CDS 55.0%
GTTGTAGCCGTGGAGTCTGT+TGG + tig0020610:36138-36157 Msa1383630:CDS 55.0%
TCTCTTGTGCAGAGACCGTG+TGG - tig0020610:36878-36897 None:intergenic 55.0%
ATACACGGACACCGGACAGT+AGG - tig0020610:37397-37416 None:intergenic 55.0%
GGCACAAGATTTCAGGCAGC+AGG + tig0020610:38082-38101 Msa1383630:intron 55.0%
CCAACTGAGCCAACGTGTGT+TGG - tig0020610:38415-38434 None:intergenic 55.0%
!! CCAACACACGTTGGCTCAGT+TGG + tig0020610:38412-38431 Msa1383630:three_prime_UTR 55.0%
CGAACACACAACCTTCCGAG+GGG - tig0020610:38455-38474 None:intergenic 55.0%
ACCATCCTCACATCAGCAGC+GGG - tig0020610:38481-38500 None:intergenic 55.0%
CACCATCCTCACATCAGCAG+CGG - tig0020610:38482-38501 None:intergenic 55.0%
CACAACCTTCCGAGGGGAAG+TGG - tig0020610:38449-38468 None:intergenic 60.0%
CGATTCCCGCTGCTGATGTG+AGG + tig0020610:38473-38492 Msa1383630:three_prime_UTR 60.0%
TCCCGCTGCTGATGTGAGGA+TGG + tig0020610:38477-38496 Msa1383630:three_prime_UTR 60.0%
!! GACCGAAAGGGCGCTTACAG+AGG - tig0020610:38526-38545 None:intergenic 60.0%
CTGTAAGCGCCCTTTCGGTC+CGG + tig0020610:38526-38545 Msa1383630:three_prime_UTR 60.0%
GGCAGCAGGGAACCCAGTTG+AGG + tig0020610:38096-38115 Msa1383630:CDS 65.0%
AGGAACGGGCCACTTCCCCT+CGG + tig0020610:38437-38456 Msa1383630:three_prime_UTR 65.0%
TAAGCGCCCTTTCGGTCCGG+AGG + tig0020610:38529-38548 Msa1383630:three_prime_UTR 65.0%
TCCGGTCACCACCAGGGTCA+GGG - tig0020610:38559-38578 None:intergenic 65.0%
TTCGGCTCCGGTCACCACCA+GGG - tig0020610:38565-38584 None:intergenic 65.0%
ATTCGGCTCCGGTCACCACC+AGG - tig0020610:38566-38585 None:intergenic 65.0%
ACGGGCCACTTCCCCTCGGA+AGG + tig0020610:38441-38460 Msa1383630:three_prime_UTR 70.0%
GGCAGGCCTCCGGACCGAAA+GGG - tig0020610:38538-38557 None:intergenic 70.0%
GTCACCACCAGGGTCAGGGC+AGG - tig0020610:38555-38574 None:intergenic 70.0%
! GCCCTGACCCTGGTGGTGAC+CGG + tig0020610:38555-38574 Msa1383630:three_prime_UTR 70.0%
CTCCGGTCACCACCAGGGTC+AGG - tig0020610:38560-38579 None:intergenic 70.0%
GGGCAGGCCTCCGGACCGAA+AGG - tig0020610:38539-38558 None:intergenic 75.0%
CCAGGGTCAGGGCAGGCCTC+CGG - tig0020610:38548-38567 None:intergenic 75.0%
GAGGCCTGCCCTGACCCTGG+TGG + tig0020610:38548-38567 Msa1383630:three_prime_UTR 75.0%
! CCGGAGGCCTGCCCTGACCC+TGG + tig0020610:38545-38564 Msa1383630:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0020610 gene 34792 38640 34792 ID=Msa1383630;Name=Msa1383630
tig0020610 mRNA 34792 38640 34792 ID=Msa1383630-mRNA-1;Parent=Msa1383630;Name=Msa1383630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=165|1|1|1|1|1|5|414|219
tig0020610 exon 34792 35146 34792 ID=Msa1383630-mRNA-1:exon:8638;Parent=Msa1383630-mRNA-1
tig0020610 exon 36130 36271 36130 ID=Msa1383630-mRNA-1:exon:8639;Parent=Msa1383630-mRNA-1
tig0020610 exon 36357 36477 36357 ID=Msa1383630-mRNA-1:exon:8640;Parent=Msa1383630-mRNA-1
tig0020610 exon 37511 37573 37511 ID=Msa1383630-mRNA-1:exon:8641;Parent=Msa1383630-mRNA-1
tig0020610 exon 38083 38640 38083 ID=Msa1383630-mRNA-1:exon:8642;Parent=Msa1383630-mRNA-1
tig0020610 five_prime_UTR 34792 34956 34792 ID=Msa1383630-mRNA-1:five_prime_utr;Parent=Msa1383630-mRNA-1
tig0020610 CDS 34957 35146 34957 ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1
tig0020610 CDS 36130 36271 36130 ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1
tig0020610 CDS 36357 36477 36357 ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1
tig0020610 CDS 37511 37573 37511 ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1
tig0020610 CDS 38083 38226 38083 ID=Msa1383630-mRNA-1:cds;Parent=Msa1383630-mRNA-1
tig0020610 three_prime_UTR 38227 38640 38227 ID=Msa1383630-mRNA-1:three_prime_utr;Parent=Msa1383630-mRNA-1
Gene Sequence

>Msa1383630

ATGGGACAACAATCATTGATCTATAGCTTTGTGGCTCGTGGTACCGTGATTCTTGCGGAGTACAGTGACTTCACAGGAAACTTCACCACCATTGCTTTACAGTGTCTTCAAAAACTCCCTGCTTCTAACAACAGGTTTACTTACAACTGTGATGGACATACCTTCAGCTTCCTCGTCGATAATGGATTCACTTACTGTGTTGTAGCCGTGGAGTCTGTTGGTAGACAAATTCCAATAGCTTTTCTTGAACGTATTAAGGATGATTTTAATAAAAGATATGGTGGAGGAAGAGCTACAACAGCAACTGCTAAAAGTCTTAACAAAGAATTTGGACCAAAGTTGAAGGAGCAAATGCAATATTGTGTGGAACATCCGGAGGAAGTTAGCAAACTTGCTAAAGTGAAAGCTCAAGTTTCTGAAGTCAAAGGAGTTATGATGGAAAATATCGACAAGGTTATTGATAGGGGAGAGAAGATTGAGGTGTTGGTGGATAAAACTGAGAACCTTCGCTCTCAGGCACAAGATTTCAGGCAGCAGGGAACCCAGTTGAGGAGAAAGATGTGGTATCAAAACATGAAGATCAAGCTCATAGTCCTTGCTATCATAATTGCATTGATTCTCATTATTGTTCTTTCTGTGTGCCATGGCTTCAGTTGTTAA

Protein sequence

>Msa1383630

MGQQSLIYSFVARGTVILAEYSDFTGNFTTIALQCLQKLPASNNRFTYNCDGHTFSFLVDNGFTYCVVAVESVGRQIPIAFLERIKDDFNKRYGGGRATTATAKSLNKEFGPKLKEQMQYCVEHPEEVSKLAKVKAQVSEVKGVMMENIDKVIDRGEKIEVLVDKTENLRSQAQDFRQQGTQLRRKMWYQNMKIKLIVLAIIIALILIIVLSVCHGFSC*