AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609460 MtrunA17_Chr4g0042101 91.597 357 9 2 1 337 1 356 0.0 673
Msa0609460 MtrunA17_Chr1g0155431 42.090 335 153 8 25 335 9 326 2.19e-87 266
Msa0609460 MtrunA17_Chr1g0155411 40.653 337 159 8 25 337 9 328 6.09e-81 249
Msa0609460 MtrunA17_Chr7g0245741 38.554 332 174 9 22 334 6 326 6.93e-73 228
Msa0609460 MtrunA17_Chr7g0245731 37.349 332 178 9 22 334 56 376 4.24e-69 220
Msa0609460 MtrunA17_Chr7g0245641 37.313 335 177 8 22 334 43 366 3.31e-68 218
Msa0609460 MtrunA17_Chr7g0245671 37.015 335 178 9 22 334 6 329 3.59e-67 214
Msa0609460 MtrunA17_Chr4g0048961 36.970 330 168 7 23 325 13 329 3.02e-66 212
Msa0609460 MtrunA17_Chr7g0245691 36.012 336 181 9 22 334 6 330 3.36e-66 211
Msa0609460 MtrunA17_Chr7g0245631 33.735 332 190 7 22 334 6 326 2.26e-64 206
Msa0609460 MtrunA17_Chr8g0364051 39.688 320 156 7 25 322 9 313 1.32e-63 204
Msa0609460 MtrunA17_Chr8g0363831 39.375 320 159 7 25 325 10 313 1.09e-62 202
Msa0609460 MtrunA17_Chr3g0077221 38.871 319 163 10 25 325 11 315 4.63e-60 195
Msa0609460 MtrunA17_Chr5g0423551 38.110 328 176 8 23 334 3 319 2.05e-59 193
Msa0609460 MtrunA17_Chr3g0077231 37.658 316 171 8 25 325 7 311 1.40e-58 191
Msa0609460 MtrunA17_Chr4g0039311 39.623 318 158 9 25 321 12 316 3.21e-58 191
Msa0609460 MtrunA17_Chr4g0039321 39.688 320 155 9 25 321 10 314 1.01e-57 189
Msa0609460 MtrunA17_Chr2g0331211 33.837 331 191 8 23 337 4 322 2.41e-56 186
Msa0609460 MtrunA17_Chr4g0010991 36.036 333 178 7 25 334 9 329 6.92e-56 185
Msa0609460 MtrunA17_Chr7g0245711 35.354 297 165 7 54 334 3 288 1.34e-55 182
Msa0609460 MtrunA17_Chr4g0002661 35.061 328 185 9 23 336 12 325 5.73e-50 169
Msa0609460 MtrunA17_Chr5g0431311 36.792 318 171 10 25 325 6 310 1.56e-47 162
Msa0609460 MtrunA17_Chr3g0106111 33.432 338 173 11 25 334 6 319 8.27e-44 153
Msa0609460 MtrunA17_Chr4g0001321 34.451 328 180 11 25 335 18 327 3.99e-43 152
Msa0609460 MtrunA17_Chr2g0333781 35.474 327 176 11 25 334 21 329 4.08e-43 152
Msa0609460 MtrunA17_Chr4g0002961 35.061 328 185 11 23 336 12 325 3.24e-42 149
Msa0609460 MtrunA17_Chr2g0281991 30.448 335 195 9 23 327 7 333 5.11e-38 138
Msa0609460 MtrunA17_Chr7g0275521 30.347 346 196 15 23 334 6 340 4.45e-36 133
Msa0609460 MtrunA17_Chr2g0282001 29.882 338 193 10 23 327 6 332 7.25e-36 132
Msa0609460 MtrunA17_Chr2g0291541 30.488 328 198 13 25 334 11 326 1.37e-34 129
Msa0609460 MtrunA17_Chr2g0282011 29.240 342 190 9 23 327 7 333 1.29e-33 127
Msa0609460 MtrunA17_Chr5g0411071 27.273 297 187 11 25 309 13 292 2.03e-23 98.2
Msa0609460 MtrunA17_Chr6g0450211 27.237 257 157 9 25 263 56 300 2.57e-18 84.7
Msa0609460 MtrunA17_Chr3g0133771 22.628 274 168 10 23 278 3 250 3.11e-12 66.6
Msa0609460 MtrunA17_Chr3g0080551 37.500 104 61 2 119 221 13 113 3.72e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609460 AT4G27250.2 57.233 318 123 4 21 325 10 327 3.49e-126 365
Msa0609460 AT4G27250.1 56.402 328 120 4 21 325 10 337 9.75e-126 365
Msa0609460 AT5G42800.1 40.000 330 167 6 25 335 9 326 1.97e-81 253
Msa0609460 AT4G35420.1 38.855 332 174 9 22 337 6 324 1.30e-68 218
Msa0609460 AT1G09510.1 37.421 318 171 8 25 326 9 314 1.04e-63 205
Msa0609460 AT1G51410.1 37.231 325 178 7 25 334 10 323 7.50e-61 197
Msa0609460 AT1G61720.1 35.671 328 179 6 21 325 10 328 3.04e-60 197
Msa0609460 AT5G19440.1 39.375 320 156 10 25 321 11 315 1.51e-59 194
Msa0609460 AT1G66800.1 37.152 323 171 10 25 329 9 317 9.42e-59 192
Msa0609460 AT1G09490.1 34.985 323 182 7 25 329 9 321 6.06e-58 190
Msa0609460 AT1G09480.2 34.365 323 184 7 25 329 9 321 7.68e-54 179
Msa0609460 AT2G33590.1 35.802 324 175 11 19 325 4 311 1.56e-53 179
Msa0609460 AT1G09500.1 34.591 318 183 7 25 326 9 317 1.61e-53 179
Msa0609460 AT1G09480.1 34.365 323 184 7 25 329 56 368 1.88e-53 180
Msa0609460 AT1G09500.3 37.363 273 148 6 25 283 9 272 1.93e-53 177
Msa0609460 AT2G45400.1 35.015 337 187 7 21 334 37 364 2.17e-53 179
Msa0609460 AT1G68540.1 35.152 330 187 10 22 334 2 321 1.50e-51 174
Msa0609460 AT2G33600.1 36.585 328 169 11 18 325 3 311 9.67e-50 169
Msa0609460 AT5G58490.1 36.061 330 175 11 25 334 10 323 5.50e-48 164
Msa0609460 AT1G25460.1 34.650 329 188 9 22 334 2 319 5.46e-47 162
Msa0609460 AT2G02400.1 32.523 329 186 11 25 334 7 318 2.75e-46 160
Msa0609460 AT2G45400.2 34.397 282 156 5 21 281 37 310 3.39e-45 157
Msa0609460 AT1G76470.1 32.523 329 195 8 23 335 6 323 1.50e-43 153
Msa0609460 AT1G09490.2 30.872 298 181 6 47 329 3 290 6.51e-43 150
Msa0609460 AT2G45400.3 33.115 305 177 6 48 334 12 307 4.66e-41 145
Msa0609460 AT1G80820.1 32.530 332 181 12 25 335 9 318 5.87e-40 144
Msa0609460 AT1G15950.3 32.110 327 187 11 25 334 14 322 6.01e-40 144
Msa0609460 AT1G15950.1 32.110 327 187 11 25 334 14 322 6.01e-40 144
Msa0609460 AT1G15950.2 33.007 306 171 10 25 313 14 302 4.51e-39 141
Msa0609460 AT1G09500.2 31.119 286 175 6 54 326 7 283 9.36e-38 137
Msa0609460 AT1G15950.4 33.451 284 156 9 25 291 14 281 5.69e-36 132
Msa0609460 AT1G15950.6 33.813 278 151 9 25 285 14 275 9.80e-36 131
Msa0609460 AT1G15950.5 33.813 278 151 9 25 285 14 275 1.23e-35 131
Msa0609460 AT2G45400.4 36.866 217 121 4 21 229 37 245 3.44e-35 129
Msa0609460 AT1G80820.2 34.043 282 145 10 25 285 9 270 2.78e-33 124
Msa0609460 AT2G23910.2 28.235 255 155 8 25 266 11 250 3.07e-24 100
Msa0609460 AT2G23910.3 28.235 255 155 8 25 266 11 250 3.09e-24 100
Msa0609460 AT2G23910.1 28.235 255 155 8 25 266 11 250 4.62e-24 100
Msa0609460 AT4G30470.1 29.412 255 151 9 25 266 11 249 3.36e-22 95.5
Msa0609460 AT1G68540.2 30.275 218 134 6 131 334 1 214 7.98e-20 87.0
Msa0609460 AT4G33360.2 24.453 274 163 12 23 278 14 261 4.97e-16 77.8
Msa0609460 AT4G33360.1 24.453 274 163 12 23 278 14 261 5.46e-16 78.2
Msa0609460 AT4G33360.3 24.453 274 163 12 23 278 2 249 7.54e-16 77.8
Msa0609460 AT1G15950.7 28.571 231 143 9 119 334 1 224 1.62e-15 75.5
Msa0609460 AT2G23910.4 27.404 208 126 7 69 266 24 216 5.34e-15 74.3
Msa0609460 AT5G14700.1 26.255 259 162 9 25 263 56 305 3.17e-14 73.2
Msa0609460 AT5G14700.2 26.168 214 140 7 25 229 56 260 3.93e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTTGCTAAAGATAA+TGG 0.183537 4_2:-56812486 Msa0609460:CDS
GCAAGATTTGAGCAGGTTTA+TGG 0.190488 4_2:+56812786 None:intergenic
CAATGCACACATATTCTTAA+TGG 0.229405 4_2:-56812013 Msa0609460:CDS
ACACAGTGTCAGTTTGTATT+TGG 0.230014 4_2:+56812659 None:intergenic
ATTATGTGTTGCCTAGATTA+TGG 0.244579 4_2:-56811683 Msa0609460:CDS
GGCACCTGTAACACAATATT+TGG 0.281952 4_2:+56817699 None:intergenic
TTTATGGTTCCTTTGATTGC+AGG 0.296003 4_2:+56812802 None:intergenic
ACTGCCAAATATTGTGTTAC+AGG 0.302149 4_2:-56817703 Msa0609460:CDS
CTCAAAGAAACTAAAAGATC+TGG 0.318600 4_2:-56811750 Msa0609460:CDS
TTAAATTTGCTAAAGATAAT+GGG 0.324810 4_2:-56812485 Msa0609460:CDS
ACAGGTGCCACAGGGTATAT+TGG 0.354757 4_2:-56817685 Msa0609460:CDS
AGTTGGATTAGAATACTCTT+TGG 0.355460 4_2:+56811915 None:intergenic
TGAAATCCAATTCTGTGAAA+AGG 0.362071 4_2:-56812762 Msa0609460:CDS
CCACAGGGTATATTGGTTCA+TGG 0.374216 4_2:-56817678 Msa0609460:CDS
AGCTTCGATGAGGCAGTAAA+AGG 0.376180 4_2:-56813038 Msa0609460:CDS
GTTATAACAAGCACTGTTGC+AGG 0.378815 4_2:-56812447 Msa0609460:CDS
TGGCAAGATTCATCAACAAT+AGG 0.382737 4_2:+56812679 None:intergenic
TTTGATGTACTATTTCTTCA+AGG 0.382990 4_2:+56811708 None:intergenic
CGCGCTGATTTGCACGAAGA+AGG 0.398678 4_2:-56813062 Msa0609460:CDS
TAATGGGATTGATCTTGTTT+CGG 0.400774 4_2:-56812469 Msa0609460:CDS
GAGTGTTACCTTAGCGTAGT+TGG 0.408387 4_2:+56811898 None:intergenic
GAAATCCAATTCTGTGAAAA+GGG 0.430378 4_2:-56812761 Msa0609460:CDS
GGTGGTAATGAAGGAAGAAA+TGG 0.456131 4_2:-56817770 None:intergenic
TCTGCTGTAAATGCACGAAT+GGG 0.461394 4_2:-56812069 Msa0609460:CDS
CATGCTACTGTCAGAGATCC+TGG 0.464239 4_2:-56817619 Msa0609460:intron
AAGCTGTACACTGTCTAACT+TGG 0.483131 4_2:-56811950 Msa0609460:CDS
TTATGGTTCCTTTGATTGCA+GGG 0.488008 4_2:+56812803 None:intergenic
AAGGTAAATAACCATAATCT+AGG 0.489051 4_2:+56811672 None:intergenic
CCATTACTTACCCATCCACT+TGG 0.492651 4_2:+56812625 None:intergenic
ATCTGCTGTAAATGCACGAA+TGG 0.493103 4_2:-56812070 Msa0609460:CDS
TCAAAGAAACTAAAAGATCT+GGG 0.495370 4_2:-56811749 Msa0609460:CDS
ATTTCAAGCAAGATTTGAGC+AGG 0.496756 4_2:+56812779 None:intergenic
ACACCTCCTGTCATTGTGGA+AGG 0.512956 4_2:-56813108 Msa0609460:CDS
TATTGTGTTACAGGTGCCAC+AGG 0.519643 4_2:-56817694 Msa0609460:CDS
CTAAAGATAGCAATGGAAAG+TGG 0.532380 4_2:-56812705 Msa0609460:CDS
CACCACCCTTCCACAATGAC+AGG 0.541255 4_2:+56813102 None:intergenic
GTTGAAGCTCTTCTTCAAAG+AGG 0.555164 4_2:-56817652 Msa0609460:CDS
GGAATACACAACCAAGTGGA+TGG 0.556204 4_2:-56812636 Msa0609460:CDS
ATCTCTGACAGTAGCATGAA+CGG 0.558337 4_2:+56817624 None:intergenic
ATAATTGACCCTGCAATCAA+AGG 0.559331 4_2:-56812811 Msa0609460:CDS
AATGGAGGAAGCAATGAGGA+TGG 0.563316 4_2:-56817752 Msa0609460:CDS
ATTACTGCTAAAGATAGCAA+TGG 0.565154 4_2:-56812712 Msa0609460:CDS
CGTTACACCTCCTGTCATTG+TGG 0.567359 4_2:-56813112 Msa0609460:CDS
ATGGAACATGCTAAAGCAGA+AGG 0.567942 4_2:-56811994 Msa0609460:CDS
CACCTCCTGTCATTGTGGAA+GGG 0.580068 4_2:-56813107 Msa0609460:CDS
TTCTTTGAGGAAATTTCAGT+AGG 0.582662 4_2:+56811764 None:intergenic
ATTCTAATCCAACTACGCTA+AGG 0.591677 4_2:-56811906 Msa0609460:intron
GGTAATGAAGGAAGAAATGG+AGG 0.593995 4_2:-56817767 None:intergenic
GTAACACAATATTTGGCAGT+AGG 0.604825 4_2:+56817706 None:intergenic
AAGAAATGGAGGAAGCAATG+AGG 0.616615 4_2:-56817756 Msa0609460:CDS
GAATACACAACCAAGTGGAT+GGG 0.623474 4_2:-56812635 Msa0609460:intron
ATTAATGAGAAAGAAAACAT+TGG 0.630403 4_2:-56812972 Msa0609460:intron
AAGACTAGTAGCTAAACAGA+AGG 0.645126 4_2:+56811653 None:intergenic
ATTGCATTGAAGCTGCAACA+TGG 0.647004 4_2:+56813000 None:intergenic
CTCCTGTCATTGTGGAAGGG+TGG 0.654676 4_2:-56813104 Msa0609460:CDS
GAGGCAGTAAAAGGATGTGA+TGG 0.658885 4_2:-56813029 Msa0609460:CDS
CGAAGAAGGAAGCTTCGATG+AGG 0.670075 4_2:-56813048 Msa0609460:CDS
CACCCTTCCACAATGACAGG+AGG 0.673181 4_2:+56813105 None:intergenic
AACATGCTAAAGCAGAAGGT+AGG 0.675020 4_2:-56811990 Msa0609460:CDS
AAATACAAACTGACACTGTG+TGG 0.677088 4_2:-56812657 Msa0609460:CDS
CTGCTGTAAATGCACGAATG+GGG 0.681829 4_2:-56812068 Msa0609460:CDS
GTGTGGAATACACAACCAAG+TGG 0.719552 4_2:-56812640 Msa0609460:CDS
CTTCTTCGTGCAAATCAGCG+CGG 0.720406 4_2:+56813063 None:intergenic
ATTGTGTTACAGGTGCCACA+GGG 0.721235 4_2:-56817693 Msa0609460:CDS
GAAGAGTCAGAAATATGACA+AGG 0.727881 4_2:-56811789 Msa0609460:CDS
CCATGAACCAATATACCCTG+TGG 0.749348 4_2:+56817678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATAAAATATAATCAA+CGG - chr4_2:56812175-56812194 Msa0609460:intron 10.0%
!!! TCTTAATTTGTATTAATTTT+AGG - chr4_2:56812356-56812375 Msa0609460:intron 10.0%
!!! CTTAATTTGTATTAATTTTA+GGG - chr4_2:56812357-56812376 Msa0609460:intron 10.0%
!!! TAAGTAATTTTTTTTTTGTA+GGG + chr4_2:56812460-56812479 None:intergenic 10.0%
!!! ATAAGTAATTTTTTTTTTGT+AGG + chr4_2:56812461-56812480 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr4_2:56812522-56812541 None:intergenic 10.0%
!! AGATATAAGTAATAAAAATA+TGG - chr4_2:56812653-56812672 Msa0609460:CDS 10.0%
!!! TAGTGTTATTTTTTTTAAAA+AGG - chr4_2:56813062-56813081 Msa0609460:CDS 10.0%
!!! ATATAATTTCTCTTTAAAAT+TGG - chr4_2:56814187-56814206 Msa0609460:intron 10.0%
!! TTAAAATGTTTAAATTAACT+TGG - chr4_2:56814432-56814451 Msa0609460:intron 10.0%
!! GAAATAATATTAAAATATGA+TGG - chr4_2:56815368-56815387 Msa0609460:intron 10.0%
!! ATAAATTAATTTATTTATCG+AGG + chr4_2:56816090-56816109 None:intergenic 10.0%
!! TGTTTATTTAATTGATCAAT+AGG - chr4_2:56811944-56811963 Msa0609460:CDS 15.0%
!!! AACAAATAATTTAGTTTGTT+TGG + chr4_2:56812138-56812157 None:intergenic 15.0%
!!! ACAAATTAAGACTTTTTTTA+GGG + chr4_2:56812347-56812366 None:intergenic 15.0%
!!! TACAAATTAAGACTTTTTTT+AGG + chr4_2:56812348-56812367 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_2:56812844-56812863 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr4_2:56812493-56812512 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr4_2:56812494-56812513 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr4_2:56812688-56812707 Msa0609460:CDS 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_2:56812772-56812791 Msa0609460:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr4_2:56812844-56812863 Msa0609460:intron 15.0%
!! TTCCTTAAAAATAAATAAGT+TGG - chr4_2:56813317-56813336 Msa0609460:intron 15.0%
!!! TACCAACTTATTTATTTTTA+AGG + chr4_2:56813322-56813341 None:intergenic 15.0%
!! TAAAACTAAATGATTAGAAA+AGG + chr4_2:56813418-56813437 None:intergenic 15.0%
!! TGATATTTGAACAATTATTT+CGG - chr4_2:56814071-56814090 Msa0609460:intron 15.0%
!!! TATTTAGTTTCATCTTAAAA+TGG + chr4_2:56814229-56814248 None:intergenic 15.0%
!!! TTTTAAAGGATTTTTCTTTT+AGG + chr4_2:56814379-56814398 None:intergenic 15.0%
!!! GTTAATTTAAACATTTTAAG+AGG + chr4_2:56814431-56814450 None:intergenic 15.0%
!!! AAAAACAAGTTTGTTTTATT+TGG - chr4_2:56814928-56814947 Msa0609460:intron 15.0%
!!! TTTAAATTTGCTAAAGATAA+TGG - chr4_2:56816941-56816960 Msa0609460:intron 15.0%
!!! TTAAATTTGCTAAAGATAAT+GGG - chr4_2:56816942-56816961 Msa0609460:intron 15.0%
!! TATAAAATGTTGTTAAATAG+TGG - chr4_2:56817098-56817117 Msa0609460:intron 15.0%
!!! ATAAACGTTTTTTAATGTAT+AGG - chr4_2:56817275-56817294 Msa0609460:intron 15.0%
!! ATATGTATATTAAATTCTTC+AGG - chr4_2:56817565-56817584 Msa0609460:intron 15.0%
!! TATGTATATTAAATTCTTCA+GGG - chr4_2:56817566-56817585 Msa0609460:intron 15.0%
!! AAGAAAAAAAGAGATTGAAT+GGG + chr4_2:56811842-56811861 None:intergenic 20.0%
!! TAAGAAAAAAAGAGATTGAA+TGG + chr4_2:56811843-56811862 None:intergenic 20.0%
!! TGATTTCATTTGAACTTAAT+TGG - chr4_2:56811921-56811940 Msa0609460:CDS 20.0%
!! TAAAGTATGAAATTAGTCAA+CGG - chr4_2:56812281-56812300 Msa0609460:intron 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG - chr4_2:56812373-56812392 Msa0609460:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr4_2:56812742-56812761 None:intergenic 20.0%
!!! TTAAGGGTTAATTATGTTTT+TGG + chr4_2:56812902-56812921 None:intergenic 20.0%
!! TAATTAACCCTTAATTTCAA+TGG - chr4_2:56812908-56812927 Msa0609460:intron 20.0%
!! GTTAAAACCATTGAAATTAA+GGG + chr4_2:56812918-56812937 None:intergenic 20.0%
!! TGTTAAAACCATTGAAATTA+AGG + chr4_2:56812919-56812938 None:intergenic 20.0%
!! AGAAAAAGAAAGAAAAAAAG+TGG - chr4_2:56812978-56812997 Msa0609460:CDS 20.0%
!! CTATCTATCTATATTATGAA+TGG - chr4_2:56813352-56813371 Msa0609460:intron 20.0%
!!! TGGAAGCATATAAATTTTTT+TGG - chr4_2:56813503-56813522 Msa0609460:intron 20.0%
!!! ATATTTTGATCGATTTGTAT+GGG + chr4_2:56813675-56813694 None:intergenic 20.0%
!! AGTTGAGCATAAATAATAAA+TGG - chr4_2:56814003-56814022 Msa0609460:intron 20.0%
!!! TTTCTTTTAGGTTAATTCTT+TGG + chr4_2:56814367-56814386 None:intergenic 20.0%
!!! AAAATTTATATGACTGACTT+TGG + chr4_2:56814716-56814735 None:intergenic 20.0%
!! TTCGAATCAATTAAAATAGT+CGG - chr4_2:56814856-56814875 Msa0609460:intron 20.0%
!!! TTTGTTTTATTTGGTTCAAT+CGG - chr4_2:56814937-56814956 Msa0609460:intron 20.0%
!!! AAAGATTATTTCTTATGTGT+CGG + chr4_2:56815312-56815331 None:intergenic 20.0%
!! CTAAACAAATTCAACTAAAT+TGG + chr4_2:56815533-56815552 None:intergenic 20.0%
!!! TTGAATTTGTTTAGATCTTT+GGG - chr4_2:56815539-56815558 Msa0609460:intron 20.0%
!!! ATATTTTACTCTTCTAGTTA+GGG + chr4_2:56815603-56815622 None:intergenic 20.0%
!!! ATTTTTTTCTTCATATGCAT+CGG + chr4_2:56816030-56816049 None:intergenic 20.0%
!! GGTAACTGAAATTTATTTAA+GGG + chr4_2:56816069-56816088 None:intergenic 20.0%
!! AGGTAACTGAAATTTATTTA+AGG + chr4_2:56816070-56816089 None:intergenic 20.0%
!!! TTTTTTACCATTACATTTGA+CGG + chr4_2:56816193-56816212 None:intergenic 20.0%
!! TCAAATGTAATGGTAAAAAA+TGG - chr4_2:56816193-56816212 Msa0609460:intron 20.0%
!! ATTAATGAGAAAGAAAACAT+TGG - chr4_2:56816455-56816474 Msa0609460:intron 20.0%
!! TTTAAATATTGTTTGTGCAT+TGG - chr4_2:56816528-56816547 Msa0609460:intron 20.0%
!!! TTTCTTGAGTTTTTCTTTTT+TGG - chr4_2:56816873-56816892 Msa0609460:intron 20.0%
!! ATATGCATACATAATCAATT+TGG + chr4_2:56817310-56817329 None:intergenic 20.0%
!! AATTGATTATGTATGCATAT+AGG - chr4_2:56817310-56817329 Msa0609460:intron 20.0%
! AGAAAAAAAGAGATTGAATG+GGG + chr4_2:56811841-56811860 None:intergenic 25.0%
!!! ATCTCTTTTTTTCTTAGTAC+AGG - chr4_2:56811847-56811866 Msa0609460:intron 25.0%
!!! TCTCTTTTTTTCTTAGTACA+GGG - chr4_2:56811848-56811867 Msa0609460:intron 25.0%
! GGTTTGTAAAATTAGATACT+AGG - chr4_2:56811965-56811984 Msa0609460:CDS 25.0%
!!! CTACATTCAATTTTGATGAA+GGG - chr4_2:56812008-56812027 Msa0609460:CDS 25.0%
!!! TACATTCAATTTTGATGAAG+GGG - chr4_2:56812009-56812028 Msa0609460:CDS 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr4_2:56812718-56812737 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_2:56812783-56812802 Msa0609460:CDS 25.0%
!!! TAGTTTTAGCAAAGCATTTA+TGG - chr4_2:56813430-56813449 Msa0609460:intron 25.0%
! ATCATTGATATCCTAAAATG+TGG - chr4_2:56813483-56813502 Msa0609460:intron 25.0%
!! TTTATATGCTTCCACATTTT+AGG + chr4_2:56813497-56813516 None:intergenic 25.0%
!!! GATATTTTGATCGATTTGTA+TGG + chr4_2:56813676-56813695 None:intergenic 25.0%
! TCAAATTCAAATTGTCTCTA+TGG + chr4_2:56814047-56814066 None:intergenic 25.0%
! AGAGAATAAGAACATAATGT+GGG - chr4_2:56814116-56814135 Msa0609460:intron 25.0%
! GTCTAAAAGTTGTACTAAAA+TGG - chr4_2:56814156-56814175 Msa0609460:intron 25.0%
!!! TCTTCAAACGTTTTTTCTTT+TGG + chr4_2:56814278-56814297 None:intergenic 25.0%
! GTCAGACTTTACTTATTTAT+TGG - chr4_2:56814331-56814350 Msa0609460:intron 25.0%
! TGTTGTTGGATATTTATGTT+TGG + chr4_2:56814653-56814672 None:intergenic 25.0%
! ATCAATTAAAATAGTCGGTT+TGG - chr4_2:56814861-56814880 Msa0609460:intron 25.0%
!!! CAAACTTGTTTTTCATTGTT+TGG + chr4_2:56814921-56814940 None:intergenic 25.0%
! AAAAATATGATGGTTTGATC+AGG - chr4_2:56815421-56815440 Msa0609460:intron 25.0%
! AAACCCGAATTTATAAAAGT+CGG - chr4_2:56815462-56815481 Msa0609460:intron 25.0%
!! AAACCCGACTTTTATAAATT+CGG + chr4_2:56815469-56815488 None:intergenic 25.0%
!! GTTGAATTTGTTTAGATCTT+TGG - chr4_2:56815538-56815557 Msa0609460:intron 25.0%
!!! TATTTTACTCTTCTAGTTAG+GGG + chr4_2:56815602-56815621 None:intergenic 25.0%
!!! GATATTTTACTCTTCTAGTT+AGG + chr4_2:56815604-56815623 None:intergenic 25.0%
! AAATACTAAAATACTCCTAG+CGG + chr4_2:56815811-56815830 None:intergenic 25.0%
! ATGAAATTGTATGATCAACA+AGG - chr4_2:56815942-56815961 Msa0609460:intron 25.0%
! ACTGAAATTTATTTAAGGGT+TGG + chr4_2:56816065-56816084 None:intergenic 25.0%
! AAGAGATTATTAGTAAGCAT+TGG + chr4_2:56816249-56816268 None:intergenic 25.0%
!!! AGTTTTTCTTTTTTGGTGAT+AGG - chr4_2:56816880-56816899 Msa0609460:intron 25.0%
! TCAAAGAAACTAAAAGATCT+GGG - chr4_2:56817678-56817697 Msa0609460:CDS 25.0%
!! TTTGATGTACTATTTCTTCA+AGG + chr4_2:56817722-56817741 None:intergenic 25.0%
! AAGGTAAATAACCATAATCT+AGG + chr4_2:56817758-56817777 None:intergenic 25.0%
CCTTCATCAAAATTGAATGT+AGG + chr4_2:56812010-56812029 None:intergenic 30.0%
!! CCTACATTCAATTTTGATGA+AGG - chr4_2:56812007-56812026 Msa0609460:CDS 30.0%
!! ACATTCAATTTTGATGAAGG+GGG - chr4_2:56812010-56812029 Msa0609460:CDS 30.0%
ACAATTTGATGCACAAGATA+TGG - chr4_2:56812058-56812077 Msa0609460:CDS 30.0%
!! CATACTTTAAAGTGTGTGTT+TGG + chr4_2:56812270-56812289 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_2:56812859-56812878 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr4_2:56812556-56812575 Msa0609460:intron 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr4_2:56812691-56812710 Msa0609460:CDS 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_2:56812814-56812833 Msa0609460:CDS 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_2:56812815-56812834 Msa0609460:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_2:56812859-56812878 Msa0609460:intron 30.0%
AAGAAAAAAAGTGGCGTAAT+TGG - chr4_2:56812987-56813006 Msa0609460:CDS 30.0%
CCTTAAGACACAAGTTTAAA+AGG + chr4_2:56813282-56813301 None:intergenic 30.0%
! CCTTTTAAACTTGTGTCTTA+AGG - chr4_2:56813279-56813298 Msa0609460:intron 30.0%
TATAGTAGTACTACTACTTG+TGG - chr4_2:56813578-56813597 Msa0609460:intron 30.0%
TAAAAGATGAAATGATGCCA+CGG + chr4_2:56813605-56813624 None:intergenic 30.0%
TCAAATTGTCTCTATGGATT+TGG + chr4_2:56814041-56814060 None:intergenic 30.0%
!! AATTATTTCGGTGCAACTTT+TGG - chr4_2:56814083-56814102 Msa0609460:intron 30.0%
GAGAGAATAAGAACATAATG+TGG - chr4_2:56814115-56814134 Msa0609460:intron 30.0%
!! TTAACTTGGCGAAAAAGTTT+TGG - chr4_2:56814446-56814465 Msa0609460:intron 30.0%
TATCGTTTATCAGTTTCACA+TGG + chr4_2:56814508-56814527 None:intergenic 30.0%
GTCATATGCAAATATGTTGT+TGG + chr4_2:56814667-56814686 None:intergenic 30.0%
!! AATCATCCATGTTGGTTTAA+TGG - chr4_2:56814800-56814819 Msa0609460:intron 30.0%
!! ATCATCCATGTTGGTTTAAT+GGG - chr4_2:56814801-56814820 Msa0609460:intron 30.0%
ATCATTTCACGATATCTGTT+TGG - chr4_2:56815249-56815268 Msa0609460:intron 30.0%
AACCCGAATTTATAAAAGTC+GGG - chr4_2:56815463-56815482 Msa0609460:intron 30.0%
! AACCCGACTTTTATAAATTC+GGG + chr4_2:56815468-56815487 None:intergenic 30.0%
! ATTTGGTTTACACCTGAATA+AGG - chr4_2:56815494-56815513 Msa0609460:intron 30.0%
!!! TCGATTTTTTGTCCTTATTC+AGG + chr4_2:56815509-56815528 None:intergenic 30.0%
!! ATTTTACTCTTCTAGTTAGG+GGG + chr4_2:56815601-56815620 None:intergenic 30.0%
TAAATGACTAAAAAACCCTG+CGG - chr4_2:56815736-56815755 Msa0609460:intron 30.0%
GTGTTAAGAAGAAATGAACA+AGG + chr4_2:56815914-56815933 None:intergenic 30.0%
AATTGTATGATCAACAAGGT+CGG - chr4_2:56815946-56815965 Msa0609460:intron 30.0%
!!! AAGTGGTAGATTTTTGGTAA+TGG - chr4_2:56815982-56816001 Msa0609460:intron 30.0%
ATGAAACTCTATGATTGATC+AGG - chr4_2:56816155-56816174 Msa0609460:intron 30.0%
TGAAATCCAATTCTGTGAAA+AGG - chr4_2:56816665-56816684 Msa0609460:intron 30.0%
GAAATCCAATTCTGTGAAAA+GGG - chr4_2:56816666-56816685 Msa0609460:intron 30.0%
ATTACTGCTAAAGATAGCAA+TGG - chr4_2:56816715-56816734 Msa0609460:intron 30.0%
! TAATGGGATTGATCTTGTTT+CGG - chr4_2:56816958-56816977 Msa0609460:intron 30.0%
AGCATAACTTTAACACTTGA+AGG + chr4_2:56817028-56817047 None:intergenic 30.0%
ATGTGTTTGTAATGAAAGCT+AGG - chr4_2:56817230-56817249 Msa0609460:intron 30.0%
CAATGCACACATATTCTTAA+TGG - chr4_2:56817414-56817433 Msa0609460:intron 30.0%
! AGTTGGATTAGAATACTCTT+TGG + chr4_2:56817515-56817534 None:intergenic 30.0%
! TTCTTTGAGGAAATTTCAGT+AGG + chr4_2:56817666-56817685 None:intergenic 30.0%
!!! CAGATCTTTTAGTTTCTTTG+AGG + chr4_2:56817679-56817698 None:intergenic 30.0%
CTCAAAGAAACTAAAAGATC+TGG - chr4_2:56817677-56817696 Msa0609460:CDS 30.0%
ATTATGTGTTGCCTAGATTA+TGG - chr4_2:56817744-56817763 Msa0609460:CDS 30.0%
GTAACACAATATTTGGCAGT+AGG + chr4_2:56811724-56811743 None:intergenic 35.0%
ACTGCCAAATATTGTGTTAC+AGG - chr4_2:56811724-56811743 Msa0609460:CDS 35.0%
TAGTACAGGGAGAAAGAATT+AGG - chr4_2:56811861-56811880 Msa0609460:intron 35.0%
!! CATTCAATTTTGATGAAGGG+GGG - chr4_2:56812011-56812030 Msa0609460:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_2:56812875-56812894 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_2:56812874-56812893 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr4_2:56812874-56812893 Msa0609460:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr4_2:56812875-56812894 Msa0609460:intron 35.0%
AAAAGATGAAATGATGCCAC+GGG + chr4_2:56813604-56813623 None:intergenic 35.0%
!!! GGGAGTGAATGTTTTTTGTT+GGG + chr4_2:56813655-56813674 None:intergenic 35.0%
!!! TGGGAGTGAATGTTTTTTGT+TGG + chr4_2:56813656-56813675 None:intergenic 35.0%
TACGTGAGTTAACTTACGTT+CGG - chr4_2:56813699-56813718 Msa0609460:intron 35.0%
TGTATGAGTTAACTTACGCT+GGG - chr4_2:56813770-56813789 Msa0609460:intron 35.0%
CAACATGGATGATTACTGTA+AGG + chr4_2:56814794-56814813 None:intergenic 35.0%
CTTACAGTAATCATCCATGT+TGG - chr4_2:56814792-56814811 Msa0609460:intron 35.0%
!! TTTAATGGGTTGGCTTAGTT+CGG - chr4_2:56814815-56814834 Msa0609460:intron 35.0%
!!! TCTGTTTGGCATGTTTTGAT+TGG - chr4_2:56815263-56815282 Msa0609460:intron 35.0%
AAAGTCGGGTTTGATTGATT+TGG - chr4_2:56815477-56815496 Msa0609460:intron 35.0%
! GTTTAGATCTTTGGGTTCAT+CGG - chr4_2:56815547-56815566 Msa0609460:intron 35.0%
!! TTTTACTCTTCTAGTTAGGG+GGG + chr4_2:56815600-56815619 None:intergenic 35.0%
AAAATATCCCTTCCCTTGAA+TGG - chr4_2:56815616-56815635 Msa0609460:intron 35.0%
TGGTCCAACAAATACCAAAT+GGG + chr4_2:56815648-56815667 None:intergenic 35.0%
ATGGTCCAACAAATACCAAA+TGG + chr4_2:56815649-56815668 None:intergenic 35.0%
!!! GTTGATGGGTTTTTAGCATA+TGG + chr4_2:56815668-56815687 None:intergenic 35.0%
TTCTGACATCCAATATGTCT+TGG - chr4_2:56815704-56815723 Msa0609460:intron 35.0%
CTTGTGTTTCCAAGACATAT+TGG + chr4_2:56815716-56815735 None:intergenic 35.0%
CTGGCTTATAACTAGAAAAC+CGG + chr4_2:56815775-56815794 None:intergenic 35.0%
!!! GTTTTCTAGTTATAAGCCAG+CGG - chr4_2:56815775-56815794 Msa0609460:intron 35.0%
! CAACACAAGTGGTAGATTTT+TGG - chr4_2:56815976-56815995 Msa0609460:intron 35.0%
GTGATTTCCGTCAAATGTAA+TGG - chr4_2:56816183-56816202 Msa0609460:intron 35.0%
CAAGCATGTATCGAAATGAA+AGG + chr4_2:56816219-56816238 None:intergenic 35.0%
! AACGCATTGATAATCATCGA+AGG - chr4_2:56816484-56816503 Msa0609460:intron 35.0%
ATAATTGACCCTGCAATCAA+AGG - chr4_2:56816616-56816635 Msa0609460:intron 35.0%
TTATGGTTCCTTTGATTGCA+GGG + chr4_2:56816627-56816646 None:intergenic 35.0%
TTTATGGTTCCTTTGATTGC+AGG + chr4_2:56816628-56816647 None:intergenic 35.0%
! AACAACCCTTTTCACAGAAT+TGG + chr4_2:56816674-56816693 None:intergenic 35.0%
CTAAAGATAGCAATGGAAAG+TGG - chr4_2:56816722-56816741 Msa0609460:intron 35.0%
TGGCAAGATTCATCAACAAT+AGG + chr4_2:56816751-56816770 None:intergenic 35.0%
ACACAGTGTCAGTTTGTATT+TGG + chr4_2:56816771-56816790 None:intergenic 35.0%
AAATACAAACTGACACTGTG+TGG - chr4_2:56816770-56816789 Msa0609460:intron 35.0%
TGAACAATGCTAGTAGTAGT+AGG + chr4_2:56816837-56816856 None:intergenic 35.0%
GTACATTAGCAGTGAAAAAC+GGG + chr4_2:56817006-56817025 None:intergenic 35.0%
GGTACATTAGCAGTGAAAAA+CGG + chr4_2:56817007-56817026 None:intergenic 35.0%
TATAAAGTCACCTGTTAGTG+AGG + chr4_2:56817053-56817072 None:intergenic 35.0%
GCAGCAGAATTTGAACAAAT+TGG - chr4_2:56817075-56817094 Msa0609460:intron 35.0%
ATTCTAATCCAACTACGCTA+AGG - chr4_2:56817521-56817540 Msa0609460:intron 35.0%
TTCCTACATATATATGCAGC+AGG - chr4_2:56817616-56817635 Msa0609460:intron 35.0%
TTCCTGCTGCATATATATGT+AGG + chr4_2:56817621-56817640 None:intergenic 35.0%
GAAGAGTCAGAAATATGACA+AGG - chr4_2:56817638-56817657 Msa0609460:CDS 35.0%
AAGAAATGGAGGAAGCAATG+AGG - chr4_2:56811671-56811690 Msa0609460:CDS 40.0%
GGCACCTGTAACACAATATT+TGG + chr4_2:56811731-56811750 None:intergenic 40.0%
GTTGAAGCTCTTCTTCAAAG+AGG - chr4_2:56811775-56811794 Msa0609460:CDS 40.0%
ATCTCTGACAGTAGCATGAA+CGG + chr4_2:56811806-56811825 None:intergenic 40.0%
ATTGAATGGGGATACTAACC+AGG + chr4_2:56811829-56811848 None:intergenic 40.0%
ATAGCTATGTCCATCCTAGT+TGG + chr4_2:56812038-56812057 None:intergenic 40.0%
ACGTAAGTTAACTCACGTAG+AGG + chr4_2:56813698-56813717 None:intergenic 40.0%
CAGCGTAAGTTAACTCATAC+AGG + chr4_2:56813771-56813790 None:intergenic 40.0%
CTGTATGAGTTAACTTACGC+TGG - chr4_2:56813769-56813788 Msa0609460:intron 40.0%
GTATGAGTTAACTTACGCTG+GGG - chr4_2:56813771-56813790 Msa0609460:intron 40.0%
CTTATATCACGTTCGCTACA+TGG + chr4_2:56813863-56813882 None:intergenic 40.0%
AACGTGATATAAGTCACGCT+GGG - chr4_2:56813870-56813889 Msa0609460:intron 40.0%
CATGAGTGAGTTAATTCTCG+CGG - chr4_2:56813900-56813919 Msa0609460:intron 40.0%
ATGAGTGAGTTAATTCTCGC+GGG - chr4_2:56813901-56813920 Msa0609460:intron 40.0%
!! TCCATGTTGGTTTAATGGGT+TGG - chr4_2:56814805-56814824 Msa0609460:intron 40.0%
!! GTTGGCTTAGTTCGGTTTTT+AGG - chr4_2:56814823-56814842 Msa0609460:intron 40.0%
! ATCTTTGGGTTCATCGGAAT+CGG - chr4_2:56815553-56815572 Msa0609460:intron 40.0%
CGGAATCGGATCATTTGATT+AGG - chr4_2:56815567-56815586 Msa0609460:intron 40.0%
GCTAAAAACCCATCAACAAC+CGG - chr4_2:56815671-56815690 Msa0609460:intron 40.0%
TTGTCATTGTCCAACAACCA+AGG - chr4_2:56815872-56815891 Msa0609460:intron 40.0%
TGTCATTGTCCAACAACCAA+GGG - chr4_2:56815873-56815892 Msa0609460:intron 40.0%
CTCTATGATTGATCAGGACT+CGG - chr4_2:56816161-56816180 Msa0609460:intron 40.0%
ATTGCATTGAAGCTGCAACA+TGG + chr4_2:56816430-56816449 None:intergenic 40.0%
GCAAGATTTGAGCAGGTTTA+TGG + chr4_2:56816644-56816663 None:intergenic 40.0%
GAATACACAACCAAGTGGAT+GGG - chr4_2:56816792-56816811 Msa0609460:intron 40.0%
ATGCTAGTAGTAGTAGGCTA+AGG + chr4_2:56816831-56816850 None:intergenic 40.0%
! GTTATAACAAGCACTGTTGC+AGG - chr4_2:56816980-56816999 Msa0609460:intron 40.0%
TATGCTACAACTCTACAGCA+CGG + chr4_2:56817130-56817149 None:intergenic 40.0%
TGCGAAAAATAGCAGTGTGT+AGG + chr4_2:56817159-56817178 None:intergenic 40.0%
ATCTGCTGTAAATGCACGAA+TGG - chr4_2:56817357-56817376 Msa0609460:intron 40.0%
TCTGCTGTAAATGCACGAAT+GGG - chr4_2:56817358-56817377 Msa0609460:intron 40.0%
ATGGAACATGCTAAAGCAGA+AGG - chr4_2:56817433-56817452 Msa0609460:intron 40.0%
AACATGCTAAAGCAGAAGGT+AGG - chr4_2:56817437-56817456 Msa0609460:intron 40.0%
AAGCTGTACACTGTCTAACT+TGG - chr4_2:56817477-56817496 Msa0609460:intron 40.0%
AATGGAGGAAGCAATGAGGA+TGG - chr4_2:56811675-56811694 Msa0609460:CDS 45.0%
! TATTGTGTTACAGGTGCCAC+AGG - chr4_2:56811733-56811752 Msa0609460:CDS 45.0%
! ATTGTGTTACAGGTGCCACA+GGG - chr4_2:56811734-56811753 Msa0609460:CDS 45.0%
CCATGAACCAATATACCCTG+TGG + chr4_2:56811752-56811771 None:intergenic 45.0%
!! CCACAGGGTATATTGGTTCA+TGG - chr4_2:56811749-56811768 Msa0609460:CDS 45.0%
TGTGTGTTTGGTTGTGTCGT+GGG + chr4_2:56812258-56812277 None:intergenic 45.0%
AGTGGCGTAATTGGAGATTC+AGG - chr4_2:56812996-56813015 Msa0609460:CDS 45.0%
CAGCGTGAGTTAACTCATGT+AGG + chr4_2:56813740-56813759 None:intergenic 45.0%
CTACATGAGTTAACTCACGC+TGG - chr4_2:56813738-56813757 Msa0609460:intron 45.0%
TCACGTGAGTTAACTCATGC+AGG + chr4_2:56813834-56813853 None:intergenic 45.0%
GAACGTGATATAAGTCACGC+TGG - chr4_2:56813869-56813888 Msa0609460:intron 45.0%
GCCAACCCATTAAACCAACA+TGG + chr4_2:56814809-56814828 None:intergenic 45.0%
ATCCCTTCCCTTGAATGGTT+TGG - chr4_2:56815621-56815640 Msa0609460:intron 45.0%
TCCCTTCCCTTGAATGGTTT+GGG - chr4_2:56815622-56815641 Msa0609460:intron 45.0%
AATGGGCCCAAACCATTCAA+GGG + chr4_2:56815631-56815650 None:intergenic 45.0%
AAATGGGCCCAAACCATTCA+AGG + chr4_2:56815632-56815651 None:intergenic 45.0%
! TTGAATGGTTTGGGCCCATT+TGG - chr4_2:56815631-56815650 Msa0609460:intron 45.0%
TGGGCCCATTTGGTATTTGT+TGG - chr4_2:56815641-56815660 Msa0609460:intron 45.0%
ATGTCAGAACAGCAACAGTC+CGG + chr4_2:56815693-56815712 None:intergenic 45.0%
GTTCATTGTGAGCATTCCCT+TGG + chr4_2:56815892-56815911 None:intergenic 45.0%
! TGCATCGGTCACGAATTTGA+CGG + chr4_2:56816015-56816034 None:intergenic 45.0%
CAGCGCGGAAAAATCTCAAT+TGG + chr4_2:56816352-56816371 None:intergenic 45.0%
AGCTTCGATGAGGCAGTAAA+AGG - chr4_2:56816389-56816408 Msa0609460:intron 45.0%
GAGGCAGTAAAAGGATGTGA+TGG - chr4_2:56816398-56816417 Msa0609460:intron 45.0%
GTGTGGAATACACAACCAAG+TGG - chr4_2:56816787-56816806 Msa0609460:intron 45.0%
GGAATACACAACCAAGTGGA+TGG - chr4_2:56816791-56816810 Msa0609460:intron 45.0%
CCATTACTTACCCATCCACT+TGG + chr4_2:56816805-56816824 None:intergenic 45.0%
CCAAGTGGATGGGTAAGTAA+TGG - chr4_2:56816802-56816821 Msa0609460:intron 45.0%
GTTATGCTGTCCTCACTAAC+AGG - chr4_2:56817040-56817059 Msa0609460:intron 45.0%
CTGCTGTAAATGCACGAATG+GGG - chr4_2:56817359-56817378 Msa0609460:intron 45.0%
GAGTGTTACCTTAGCGTAGT+TGG + chr4_2:56817532-56817551 None:intergenic 45.0%
!!! TTTTTTTTTATGTAAAAAAA+AGG - chr4_2:56813101-56813120 Msa0609460:CDS 5.0%
!!! TATTTTCTTAAAAATAAAAA+AGG - chr4_2:56813168-56813187 Msa0609460:intron 5.0%
!!! ATTTTTTTATGTAAAAAAAA+AGG - chr4_2:56813209-56813228 Msa0609460:intron 5.0%
!!! ATATTTTTCTTTTTTTAAAA+GGG + chr4_2:56813561-56813580 None:intergenic 5.0%
!!! TATATTTTTCTTTTTTTAAA+AGG + chr4_2:56813562-56813581 None:intergenic 5.0%
!!! TAAATAATTCTTTTTTTTAA+AGG + chr4_2:56814393-56814412 None:intergenic 5.0%
!!! TAAAAAAATTATTTTTTTGA+AGG + chr4_2:56815103-56815122 None:intergenic 5.0%
!! AATAATATTAAAAAATATGA+TGG - chr4_2:56815411-56815430 Msa0609460:intron 5.0%
!! TTAATATACATATTAAAAAA+AGG + chr4_2:56817558-56817577 None:intergenic 5.0%
! ACAGGTGCCACAGGGTATAT+TGG - chr4_2:56811742-56811761 Msa0609460:CDS 50.0%
CATGCTACTGTCAGAGATCC+TGG - chr4_2:56811808-56811827 Msa0609460:intron 50.0%
GTGTGTGTTTGGTTGTGTCG+TGG + chr4_2:56812259-56812278 None:intergenic 50.0%
CAGCGTGAGTTAACTCATGC+AGG + chr4_2:56813802-56813821 None:intergenic 50.0%
GCATGAGTTAACTCACGCTG+TGG - chr4_2:56813802-56813821 Msa0609460:intron 50.0%
TTGATCAGGTCTCGAGTGAC+TGG - chr4_2:56815435-56815454 Msa0609460:intron 50.0%
GCCCAAACCATTCAAGGGAA+GGG + chr4_2:56815626-56815645 None:intergenic 50.0%
GCAACAGTCCGGTTGTTGAT+GGG + chr4_2:56815682-56815701 None:intergenic 50.0%
AGCAACAGTCCGGTTGTTGA+TGG + chr4_2:56815683-56815702 None:intergenic 50.0%
TAGCGGTAGTTAACTACCGC+TGG + chr4_2:56815794-56815813 None:intergenic 50.0%
AGCGGTAGTTAACTACCGCT+AGG - chr4_2:56815793-56815812 Msa0609460:intron 50.0%
GTGAGCATTCCCTTGGTTGT+TGG + chr4_2:56815885-56815904 None:intergenic 50.0%
TCGGTGTGACACAACACAAG+TGG - chr4_2:56815965-56815984 Msa0609460:intron 50.0%
CGTTACACCTCCTGTCATTG+TGG - chr4_2:56816315-56816334 Msa0609460:intron 50.0%
ACACCTCCTGTCATTGTGGA+AGG - chr4_2:56816319-56816338 Msa0609460:intron 50.0%
CACCTCCTGTCATTGTGGAA+GGG - chr4_2:56816320-56816339 Msa0609460:intron 50.0%
CTTCTTCGTGCAAATCAGCG+CGG + chr4_2:56816367-56816386 None:intergenic 50.0%
CGAAGAAGGAAGCTTCGATG+AGG - chr4_2:56816379-56816398 Msa0609460:intron 50.0%
TGATGAAGGGGGGACCAACT+AGG - chr4_2:56812021-56812040 Msa0609460:CDS 55.0%
GTACTACTACTTGTGGCCCG+TGG - chr4_2:56813585-56813604 Msa0609460:intron 55.0%
GGCCCAAACCATTCAAGGGA+AGG + chr4_2:56815627-56815646 None:intergenic 55.0%
GGCAGCAGTTAACTACCGCA+GGG + chr4_2:56815754-56815773 None:intergenic 55.0%
CTGCGGTAGTTAACTGCTGC+CGG - chr4_2:56815753-56815772 Msa0609460:intron 55.0%
CACCCTTCCACAATGACAGG+AGG + chr4_2:56816325-56816344 None:intergenic 55.0%
CTCCTGTCATTGTGGAAGGG+TGG - chr4_2:56816323-56816342 Msa0609460:intron 55.0%
CACCACCCTTCCACAATGAC+AGG + chr4_2:56816328-56816347 None:intergenic 55.0%
!! CGCGCTGATTTGCACGAAGA+AGG - chr4_2:56816365-56816384 Msa0609460:intron 55.0%
GAAGGGGGGACCAACTAGGA+TGG - chr4_2:56812025-56812044 Msa0609460:CDS 60.0%
CGGCAGCAGTTAACTACCGC+AGG + chr4_2:56815755-56815774 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56811664 56817785 56811664 ID=Msa0609460;Name=Msa0609460
chr4_2 mRNA 56811664 56817785 56811664 ID=Msa0609460-mRNA-1;Parent=Msa0609460;Name=Msa0609460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.8|0.83|6|0|337
chr4_2 exon 56817620 56817785 56817620 ID=Msa0609460-mRNA-1:exon:14745;Parent=Msa0609460-mRNA-1
chr4_2 exon 56812973 56813140 56812973 ID=Msa0609460-mRNA-1:exon:14744;Parent=Msa0609460-mRNA-1
chr4_2 exon 56812636 56812853 56812636 ID=Msa0609460-mRNA-1:exon:14743;Parent=Msa0609460-mRNA-1
chr4_2 exon 56812428 56812547 56812428 ID=Msa0609460-mRNA-1:exon:14742;Parent=Msa0609460-mRNA-1
chr4_2 exon 56811907 56812097 56811907 ID=Msa0609460-mRNA-1:exon:14741;Parent=Msa0609460-mRNA-1
chr4_2 exon 56811664 56811814 56811664 ID=Msa0609460-mRNA-1:exon:14740;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56817620 56817785 56817620 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56812973 56813140 56812973 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56812636 56812853 56812636 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56812428 56812547 56812428 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56811907 56812097 56811907 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
chr4_2 CDS 56811664 56811814 56811664 ID=Msa0609460-mRNA-1:cds;Parent=Msa0609460-mRNA-1
Gene Sequence

>Msa0609460

ATGAAGGAAGAAATGGAGGAAGCAATGAGGATGGTGAGAAGCAGTGTTCAAATTGTTCCTACTGCCAAATATTGTGTTACAGGTGCCACAGGGTATATTGGTTCATGGCTTGTTGAAGCTCTTCTTCAAAGAGGTTGCACCGTTCATGCTACTGTCAGAGATCCTGAAAAGTCGTTACACCTCCTGTCATTGTGGAAGGGTGGTGACCAATTGAGATTTTTCCGCGCTGATTTGCACGAAGAAGGAAGCTTCGATGAGGCAGTAAAAGGATGTGATGGTGTGTTCCATGTTGCAGCTTCAATGCAATTCAATATTAATGAGAAAGAAAACATTGAGAACTTTGTTCAAACAAATATAATTGACCCTGCAATCAAAGGAACCATAAACCTGCTCAAATCTTGCTTGAAATCCAATTCTGTGAAAAGGGTTGTTTTCACATCTTCTATAAGTACTATTACTGCTAAAGATAGCAATGGAAAGTGGAAACCTATTGTTGATGAATCTTGCCAAATACAAACTGACACTGTGTGGAATACACAACCAAGTGGATGGGTTTATGCACTTTCAAAGCTTCTCACAGAAGAAGCAGCATTTAAATTTGCTAAAGATAATGGGATTGATCTTGTTTCGGTTATAACAAGCACTGTTGCAGGCCCGTTTTTCACTGCTAATATATTATCTGCTGTAAATGCACGAATGGGGTCAATTGCTTTAGTTCACATTGAAGATATATGCAATGCACACATATTCTTAATGGAACATGCTAAAGCAGAAGGTAGGTACATATGCAGCGCACAAAGCTGTACACTGTCTAACTTGGCAGCTCTTGTTTCCAAAGAGTATTCTAATCCAACTACGCTAAGCAGGAAGAGTCAGAAATATGACAAGGTTCCTACTGAAATTTCCTCAAAGAAACTAAAAGATCTGGGTTTTAGTTACAAGCATAGCCTTGAAGAAATAGTACATCAAACAATTATGTGTTGCCTAGATTATGGTTATTTACCTTCTGTTTAG

Protein sequence

>Msa0609460

MKEEMEEAMRMVRSSVQIVPTAKYCVTGATGYIGSWLVEALLQRGCTVHATVRDPEKSLHLLSLWKGGDQLRFFRADLHEEGSFDEAVKGCDGVFHVAASMQFNINEKENIENFVQTNIIDPAIKGTINLLKSCLKSNSVKRVVFTSSISTITAKDSNGKWKPIVDESCQIQTDTVWNTQPSGWVYALSKLLTEEAAFKFAKDNGIDLVSVITSTVAGPFFTANILSAVNARMGSIALVHIEDICNAHIFLMEHAKAEGRYICSAQSCTLSNLAALVSKEYSNPTTLSRKSQKYDKVPTEISSKKLKDLGFSYKHSLEEIVHQTIMCCLDYGYLPSV*