AlfalfaGEDB | MS.gene003158

M. sativa cultivar XinJiangDaYe / MS.gene003158

KEGG: K07877
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003158.t1	XP_003594353.1	100	211	0	0	1	211	1	211	1.30E-115	425.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003158.t1	P92963	97.1	210	6	0	1	210	1	210	2.1e-114	412.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003158.t1	A2Q5G2	100.0	211	0	0	1	211	1	211	9.5e-116	425.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000342	MS.gene003158	PPI
MS.gene001096	MS.gene003158	PPI
MS.gene003158	MS.gene061580	PPI
MS.gene003158	MS.gene006652	PPI
MS.gene003158	MS.gene060519	PPI
MS.gene003158	MS.gene073174	PPI
MS.gene003158	MS.gene061904	PPI
MS.gene003158	MS.gene065824	PPI
MS.gene003158	MS.gene068531	PPI
MS.gene003158	MS.gene58905	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003158.t1	MTR_2g027660	100.000	211	0	0	1	211	1	211	7.47e-160	440
MS.gene003158.t1	MTR_6g021790	88.626	211	24	0	1	211	1	211	5.84e-140	390
MS.gene003158.t1	MTR_8g031680	68.720	211	65	1	1	211	1	210	5.91e-105	301
MS.gene003158.t1	MTR_8g031660	66.351	211	66	1	1	211	1	206	3.48e-104	299
MS.gene003158.t1	MTR_8g031870	78.049	164	36	0	1	164	1	164	6.10e-95	275
MS.gene003158.t1	MTR_8g031830	64.019	214	58	3	1	211	1	198	1.53e-94	274
MS.gene003158.t1	MTR_2g014990	48.095	210	105	2	3	211	10	216	2.54e-66	203
MS.gene003158.t1	MTR_4g088090	47.619	210	106	2	3	211	10	216	1.95e-65	201
MS.gene003158.t1	MTR_2g005510	53.073	179	84	0	3	181	12	190	1.31e-64	199
MS.gene003158.t1	MTR_4g079350	47.143	210	107	2	3	211	10	216	1.94e-64	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003158.t1	AT4G17170	97.143	210	6	0	1	210	1	210	7.64e-155	427
MS.gene003158.t1	AT4G35860	85.238	210	31	0	1	210	1	210	1.25e-136	381
MS.gene003158.t1	AT4G17160	78.673	211	37	2	1	210	1	204	8.15e-121	341
MS.gene003158.t1	AT4G35860	81.707	164	30	0	47	210	1	164	1.50e-100	288
MS.gene003158.t1	AT5G45750	46.479	213	103	2	3	211	10	215	7.10e-66	202
MS.gene003158.t1	AT5G60860	48.095	210	105	2	3	211	10	216	8.82e-66	202
MS.gene003158.t1	AT3G12160	47.393	211	101	2	5	210	14	219	2.30e-64	199
MS.gene003158.t1	AT4G18430	48.095	210	105	2	3	211	10	216	3.63e-64	198
MS.gene003158.t1	AT3G15060	47.368	209	108	1	3	211	10	216	7.95e-64	197
MS.gene003158.t1	AT2G33870	47.664	214	101	3	3	211	10	217	1.28e-63	196

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Find 54 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGTTGAAAGCGCTTGT+CGG	0.490151	2.1:+63024169	None:intergenic
AACAGTTTGCAAAGGAGAAC+GGG	0.430066	2.1:-63022116	MS.gene003158:CDS
AACTGCTCAGAATGTTGAAG+AGG	0.551651	2.1:-63022067	MS.gene003158:intron
AATATGACAATTATGCTGAT+TGG	0.496339	2.1:-63022189	MS.gene003158:CDS
AATCCTTCAGATCTATCACA+AGG	0.690302	2.1:-63023002	MS.gene003158:CDS
AGAAGGTGAACAGTTTGCAA+AGG	0.650461	2.1:-63022124	MS.gene003158:CDS
AGCCAATCAAGTTGCAAATA+TGG	0.213769	2.1:-63024091	MS.gene003158:CDS
AGGGATGGACCTTCTGCTGC+GGG	0.454453	2.1:-63021516	MS.gene003158:CDS
AGTGTGATCTTGCTCACAGA+CGG	0.590726	2.1:-63022161	MS.gene003158:CDS
ATCACAAGGTCATATTACAG+AGG	0.688361	2.1:-63022988	MS.gene003158:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGAACCTAACTATATG+GGG	-	chr2.1:63022922-63022941	MS.gene003158:intron	30.0%
AATGATTATCCAGATTTCAG+TGG	-	chr2.1:63023367-63023386	MS.gene003158:intron	30.0%
AATGGAACAACATACTATGT+GGG	-	chr2.1:63024101-63024120	MS.gene003158:CDS	30.0%
ACAAGATTGACTACAGAAAT+AGG	-	chr2.1:63023160-63023179	MS.gene003158:intron	30.0%
ACAATCTGTGTATGTTTCAA+GGG	-	chr2.1:63024781-63024800	MS.gene003158:intron	30.0%
AGAATGAGAACCTAACTATA+TGG	-	chr2.1:63022920-63022939	MS.gene003158:intron	30.0%
AGATTTGTCATTCTTTACCT+CGG	-	chr2.1:63024680-63024699	MS.gene003158:intron	30.0%
AGTATGAACATTGAACAAGT+TGG	+	chr2.1:63022468-63022487	None:intergenic	30.0%
ATAATAGAAGTCAAAGCTTG+AGG	+	chr2.1:63023558-63023577	None:intergenic	30.0%
ATGCAGATAGGAACTATATT+TGG	-	chr2.1:63022683-63022702	MS.gene003158:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	63021497	63025005	63021497	ID=MS.gene003158
chr2.1	mRNA	63021497	63025005	63021497	ID=MS.gene003158.t1;Parent=MS.gene003158
chr2.1	exon	63024960	63025005	63024960	ID=MS.gene003158.t1.exon1;Parent=MS.gene003158.t1
chr2.1	CDS	63024960	63025005	63024960	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1
chr2.1	exon	63024085	63024224	63024085	ID=MS.gene003158.t1.exon2;Parent=MS.gene003158.t1
chr2.1	CDS	63024085	63024224	63024085	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1
chr2.1	exon	63022952	63023034	63022952	ID=MS.gene003158.t1.exon3;Parent=MS.gene003158.t1
chr2.1	CDS	63022952	63023034	63022952	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1
chr2.1	exon	63022068	63022272	63022068	ID=MS.gene003158.t1.exon4;Parent=MS.gene003158.t1
chr2.1	CDS	63022068	63022272	63022068	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1
chr2.1	exon	63021847	63021915	63021847	ID=MS.gene003158.t1.exon5;Parent=MS.gene003158.t1
chr2.1	CDS	63021847	63021915	63021847	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1
chr2.1	exon	63021497	63021589	63021497	ID=MS.gene003158.t1.exon6;Parent=MS.gene003158.t1
chr2.1	CDS	63021497	63021589	63021497	ID=cds.MS.gene003158.t1;Parent=MS.gene003158.t1

Gene Sequence

>MS.gene003158

ATGTCTTACGCATACCTCTTCAAATACATCATCATCGGCGATACTGGTAATTATAATCTCAATTAACCCCTTTCTAATCTCTTTTTATTTATCTTAATTAATCTCAATTTATTCTATTCTCTTAATCATGCGTCTTCCAGCTTCGATTTCCGATCGGATTTATTCATTTTTCTTTTCAGGGTTTTTGTTTTGTTTGAGAATTATTTTATATACATGTATAATATGATGATGATGATGATTATTTGATGTTGATTCTCTTGTGTTATTTTAACAAGCTAACAAAATTTTGATTATTACTAACTATTCATAAGTATTTAGTAGTAGTTAATGAGGTTTAATTAATGAAGAATCGATCAGAAGCACCCGAGTTCGATCACTGACCGGAACAATTATTGGTCAGTCAGACTTTAGTTACCTCTTGCCTAACTCCATCGCACTATTCATTATTTTTATGTAGTTTAGGGAAATTGGAGTTAAAGTGATAGTTTATTTTATGGACTAAATTGGAGAGAAAGTGATAGTTTAGGGACTAAATTGGAGAGAAATTGATAGTTTAGGGACTAAATGGATGGTTTATTCAATTTTGTTATTGTGATGGATCCTTTATTGTTAGTTTTGTTTCATTAACTATGAATGAAAACTGTTGAGTGTGTTATATATAGTTTGATCCTTATTTCGTTTAGTTTGTATTTTGTTAAATTATGTAGTTTAAGTTTTGGTAGTGGCAATTCATGCCAGAGGGCTTTGGTTTTATGACCTTATTTTGAAAAAAATTGTGTAGGAGTTGGGAAGTCATGTCTTCTACTTCAGTTCACCGACAAGCGCTTTCAACCTGTTCATGACTTGACCATCGGTGTTGAATTTGGTGCCCGGATGATCACGATTGATAATAAGCCAATCAAGTTGCAAATATGGGATACCGTATGTTTGTCAACTCTTTCATAGAACTTGTTTATTACTTACTCCTTCCAACTTGTTCAATGTTCATACTTAATTACTAATTTACATACAAATCTGTGAAAATTATTGTTGATTCTCGTTTCTAGGAATTGGTAATTGGTTGTGATCATCATTTCAATCCAGGGCCTTTTAGTTTCACCCTCAAGATTTCTATTTGGTTGAAAATGATATTTCATATTATTATCATTTTATGTTGATTCATTGGCTGATTTTCATATGAAGAGCTATGCAGATAGGAACTATATTTGGTAGTAGGCTTAGGGTTGATGCTGCTGTTTGTCATATTTGTAGGCTATCGCTATAATTTTAACATCCATGCCATTTTGTTTCAAAGAATACTCTGCTAAGTGTAATAATAACATGCCTTGTTATTTTGAAATGTTGTATCTATAACTCTCTTTATAATGTTAAAAAATCATCAGTGTTCCACTTAATATATAATCCATTTACATTTACATTGTTGAGAATGAGAACCTAACTATATGGGGATGAAAGTATTTGAATTTATCTGTAAAAGTTACTATATACATGAAATAAATTTATGGCTTTGTATATGTAAGATAGGTTTCTAAACTAATCTTCTCAAGTGGTCATAGGGTATGAATGGAAAGATTTTATCTAATAGATGGGAGTGTAGGGTGCGATATGGGATTTGGTAATGGTGACCCTTAAGGTACCTTCCAGTTTTCAAATGGTTAGTTTTACAAGATTGACTACAGAAATAGGTCCTCTCATTGAAATTTATGTCGCCTTGTTATTTTGAAATTTTGTATCTATAACTCTCTTTATAATGTTAAAAAATCTTCAGTTTTCCACTTAATATATAAACAGAGATATAAAAACAAAATTTGACCCAGATGAGGTTCTGTGAAATTTCAACATGAGATAATCCAGTCCCTTTTCAGCATAGAATGATTATCCAGATTTCAGTGGTGGAAACATTATTCATTTGTTGGTTGAGTTTAATAAATTGTGAAGCTGAAGGTACTGAACTTATTCACTATATTTCAGGCGGGCCAAGAATCCTTCAGATCTATCACAAGGTCATATTACAGAGGGGCTGCAGGTGCACTGCTTGTTTATGATATAACCAGGTATCCTCAAGCTTTGACTTCTATTATCTGAGTTTGAAATCCCAAAATACAATAATTATTTTCACTTAAAATTAAAGAAGCAATACATTGTGGGGGGATGATGAAAATCACTGGGACAAGTCATGAATGGAGTCGCTCGTATTAGACTATAAGTTACTCGGTTTGATTGTCTCTTAAATAATCTCACCAAAGTTTGGAAGAAAAGAGAGACACCATCGTCCGATGGCACTTAGCTAAGAATGATCTTCCTTAGGGTTAGGAACTACACCTGCCGCCACTTCACAGTCCATCTCAACGATTACATGAAATATTAATGTTATATCTTCCAGTTGCTTGAAATATGATTTGCAAATCATTTTGGTCTGTTTATTTCTAAAATGCAACTGTTTAAATACAATTTCATAACTTGGGCTAAATAGCTTTTAGATTTTTTCTAGGGAAGATATGACGAGTTTGTCCAACAAAAATCAATTTATTGAAAAACATTGATAACACGCATTTTGAGTTTTTATATGCCTTGGGAGATACATGTTTTGAGTGCATCCAATTTAATGGAACAACATACTATGTGGGACAATTTTGATGCATGGATGCCTATGTAGTTTCATGTTAGTTTTATGTGTTGTTTAATGTAAATAAGGCACAATATAAACAATCCTGACCCTGTGTTTATGAATAGGAGGGAGACATTTAATCACTTAGCTAGCTGGTTGGAAGATGCAAGGCAGCATGCAAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGTGATCTTGCTCACAGACGGGCTGTAAGCACGGAAGAAGGTGAACAGTTTGCAAAGGAGAACGGGTTGATCTTCATGGAGGCCTCGGCAAAAACTGCTCAGAATGTTGAAGAGGTCAGAACTCACATCATATCTATTGTTTTCTTCATTTATTTCCCATCCACCCTCCCACAAGGAAAGCCAGATTTTATACATAACAGGTTCTAGGTTGAATATTTTGGAAAATTATCTGTATAAAAGTTTTAATATAACCTATCCTTTTACAGGCATTCATAAAAACAGCTGGAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCGAATGAGGTTAGTTTCTTTTTTCATTTTTTTAGATTTGTCATTCTTTACCTCGGGTGTTTTGTCACTTCATTATTAATATCATTAAGAATTTGTGGGATATTCAATTTCACTGTGTCCTTTATTTTTGTAATACAATCTGTGTATGTTTCAAGGGAAGGCTAATGATTATTATAGAAAAGTGTAGCTCTTCTGGAGTTAATGATTATTATAAGGCTAATGATTATCCAACAAACAAGTCACTGATAATTTTCATATGCTTGCAGTCTTATGGAATAAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGACCTTCTGCTGCGGGTGGAGGCTGCTGCAGTTGA

Protein sequence

>MS.gene003158.t1

MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSAAGGGCCS