AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26865


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26865.t1 MTR_4g088090 100.000 217 0 0 1 217 1 217 1.26e-161 445
MS.gene26865.t1 MTR_2g014990 95.392 217 10 0 1 217 1 217 1.68e-155 429
MS.gene26865.t1 MTR_4g079350 94.009 217 13 0 1 217 1 217 1.64e-154 427
MS.gene26865.t1 MTR_2g090865 80.556 216 39 2 1 216 1 213 3.82e-128 360
MS.gene26865.t1 MTR_2g075950 78.539 219 43 3 1 217 1 217 2.08e-125 353
MS.gene26865.t1 MTR_2g083860 76.256 219 47 2 1 216 1 217 9.28e-118 334
MS.gene26865.t1 MTR_3g069510 67.593 216 66 2 3 216 2 215 1.18e-107 308
MS.gene26865.t1 MTR_2g005510 66.977 215 66 2 6 217 8 220 1.11e-106 306
MS.gene26865.t1 MTR_4g064897 67.593 216 65 3 3 216 2 214 6.91e-105 301
MS.gene26865.t1 MTR_1g052475 61.905 210 75 2 11 215 13 222 3.28e-94 275
MS.gene26865.t1 MTR_0262s0050 60.190 211 78 3 11 217 13 221 2.56e-89 262
MS.gene26865.t1 MTR_8g089985 57.870 216 87 1 6 217 10 225 4.45e-88 259
MS.gene26865.t1 MTR_8g027220 57.407 216 90 1 4 217 17 232 2.63e-87 257
MS.gene26865.t1 MTR_6g079550 56.808 213 88 2 7 217 6 216 3.94e-87 256
MS.gene26865.t1 MTR_3g086980 55.814 215 88 2 6 215 9 221 1.52e-86 255
MS.gene26865.t1 MTR_7g405790 57.005 207 87 1 12 216 14 220 1.62e-79 237
MS.gene26865.t1 MTR_8g036220 53.304 227 95 4 1 216 1 227 8.43e-79 236
MS.gene26865.t1 MTR_1g078200 54.717 212 90 3 11 216 12 223 1.28e-78 235
MS.gene26865.t1 MTR_7g051940 54.327 208 88 2 12 216 12 215 4.09e-75 226
MS.gene26865.t1 MTR_8g107070 57.212 208 84 2 7 211 8 213 6.66e-75 227
MS.gene26865.t1 MTR_7g117910 47.945 219 94 3 3 217 10 212 8.39e-67 204
MS.gene26865.t1 MTR_2g027660 47.619 210 106 2 10 216 3 211 2.00e-65 201
MS.gene26865.t1 MTR_6g021790 45.070 213 107 3 10 216 3 211 9.46e-63 194
MS.gene26865.t1 MTR_7g081700 45.498 211 105 1 7 217 2 202 1.46e-59 186
MS.gene26865.t1 MTR_8g031660 46.667 210 103 4 10 216 3 206 1.40e-57 181
MS.gene26865.t1 MTR_8g006970 46.154 208 101 2 11 217 20 217 1.47e-57 181
MS.gene26865.t1 MTR_1g115325 42.925 212 108 3 9 215 11 214 3.20e-56 178
MS.gene26865.t1 MTR_1g068740 44.037 218 109 5 5 217 7 216 4.57e-56 177
MS.gene26865.t1 MTR_1g068730 43.578 218 110 5 5 217 7 216 2.11e-55 176
MS.gene26865.t1 MTR_7g100020 44.860 214 105 5 9 217 11 216 1.39e-54 174
MS.gene26865.t1 MTR_8g006970 52.410 166 79 0 9 174 4 169 1.84e-54 172
MS.gene26865.t1 MTR_8g031870 51.899 158 76 0 12 169 5 162 2.16e-54 172
MS.gene26865.t1 MTR_8g031680 40.670 209 121 2 10 216 3 210 2.10e-53 171
MS.gene26865.t1 MTR_2g005500 47.929 169 88 0 6 174 2 170 2.36e-51 165
MS.gene26865.t1 MTR_4g063160 42.453 212 110 5 9 215 11 215 1.51e-50 163
MS.gene26865.t1 MTR_8g031830 50.327 153 76 0 12 164 5 157 3.30e-50 162
MS.gene26865.t1 MTR_2g096550 39.631 217 116 5 4 215 6 212 3.20e-49 160
MS.gene26865.t1 MTR_3g064390 39.109 202 110 2 15 216 12 200 1.99e-48 157
MS.gene26865.t1 MTR_8g093740 40.000 220 115 5 1 215 1 208 2.36e-48 157
MS.gene26865.t1 MTR_1g068730 56.349 126 55 0 5 130 7 132 6.11e-48 155
MS.gene26865.t1 MTR_5g076590 39.109 202 110 2 15 216 12 200 6.70e-48 156
MS.gene26865.t1 MTR_1g068740 56.349 126 55 0 5 130 7 132 8.31e-48 155
MS.gene26865.t1 MTR_1g094220 44.785 163 89 1 15 176 33 195 3.98e-47 154
MS.gene26865.t1 MTR_7g103070 42.723 213 105 4 10 216 13 214 1.24e-46 153
MS.gene26865.t1 MTR_1g029450 40.092 217 106 6 9 216 13 214 1.61e-46 153
MS.gene26865.t1 MTR_3g096350 41.509 212 107 5 9 215 8 207 1.81e-46 152
MS.gene26865.t1 MTR_1g094220 44.937 158 86 1 15 171 33 190 5.34e-46 151
MS.gene26865.t1 MTR_4g099470 43.103 174 89 1 44 217 15 178 3.13e-45 149
MS.gene26865.t1 MTR_1g094220 46.104 154 82 1 15 167 33 186 3.25e-45 149
MS.gene26865.t1 MTR_1g094220 43.017 179 92 2 15 192 33 202 6.11e-45 150
MS.gene26865.t1 MTR_2g102060 37.438 203 111 3 15 216 12 199 7.80e-44 145
MS.gene26865.t1 MTR_1g090717 41.014 217 110 6 6 216 8 212 9.37e-44 146
MS.gene26865.t1 MTR_1g062760 41.981 212 105 6 10 215 11 210 2.68e-43 145
MS.gene26865.t1 MTR_4g098950 34.197 193 109 1 14 206 10 184 8.34e-42 140
MS.gene26865.t1 MTR_5g013900 33.679 193 110 1 14 206 10 184 9.25e-42 140
MS.gene26865.t1 MTR_8g103550 40.000 160 96 0 15 174 11 170 2.56e-41 139
MS.gene26865.t1 MTR_3g087160 36.306 157 100 0 14 170 10 166 9.34e-40 135
MS.gene26865.t1 MTR_8g090215 36.306 157 100 0 14 170 10 166 1.08e-39 135
MS.gene26865.t1 MTR_4g069850 36.190 210 113 7 13 214 8 204 8.08e-39 133
MS.gene26865.t1 MTR_2g101890 38.071 197 104 6 13 201 10 196 6.58e-38 131
MS.gene26865.t1 MTR_4g012940 37.500 200 103 7 13 202 8 195 2.67e-37 129
MS.gene26865.t1 MTR_3g064390 46.400 125 67 0 15 139 12 136 3.38e-37 127
MS.gene26865.t1 MTR_3g096350 52.846 123 55 3 9 129 8 129 5.78e-37 126
MS.gene26865.t1 MTR_1g097420 39.506 162 91 3 13 167 8 169 7.83e-37 128
MS.gene26865.t1 MTR_3g096350 52.846 123 55 3 9 129 8 129 1.01e-36 126
MS.gene26865.t1 MTR_8g092020 41.358 162 88 3 13 167 12 173 1.42e-36 127
MS.gene26865.t1 MTR_8g093740 38.418 177 93 4 44 215 10 175 3.24e-33 118
MS.gene26865.t1 MTR_1g069245 66.316 95 28 2 26 120 109 199 4.34e-33 119
MS.gene26865.t1 MTR_7g103070 41.071 168 82 4 55 216 2 158 2.76e-32 115
MS.gene26865.t1 MTR_6g039490 37.654 162 94 3 13 167 8 169 7.62e-32 115
MS.gene26865.t1 MTR_1g097420 30.734 218 117 4 13 196 8 225 1.23e-30 113
MS.gene26865.t1 MTR_3g107707 30.526 190 126 4 14 203 14 197 3.63e-26 100
MS.gene26865.t1 MTR_3g107713 30.526 190 126 4 14 203 14 197 3.71e-26 100
MS.gene26865.t1 MTR_2g078000 89.796 49 5 0 74 122 46 94 4.56e-26 97.4
MS.gene26865.t1 MTR_3g107717 31.016 187 123 4 14 200 14 194 8.04e-26 100
MS.gene26865.t1 MTR_2g005500 32.544 169 74 1 6 174 2 130 2.67e-22 89.4
MS.gene26865.t1 MTR_8g031810 43.689 103 44 1 12 114 5 93 2.99e-22 87.4
MS.gene26865.t1 MTR_2g078560 84.783 46 7 0 75 120 54 99 1.09e-20 88.6
MS.gene26865.t1 MTR_1452s0010 43.038 79 45 0 33 111 1 79 5.51e-20 81.6
MS.gene26865.t1 MTR_4g113620 26.425 193 127 5 14 206 14 191 7.04e-20 84.3
MS.gene26865.t1 MTR_3g078260 30.387 181 112 5 13 181 8 186 7.35e-20 84.3
MS.gene26865.t1 MTR_4g088055 37.500 120 72 3 13 131 6 123 7.96e-20 84.0
MS.gene26865.t1 MTR_4g073250 29.834 181 113 5 13 181 6 184 2.71e-19 82.4
MS.gene26865.t1 MTR_6g087980 36.290 124 76 3 13 135 6 127 2.74e-19 82.8
MS.gene26865.t1 MTR_2g090875 31.138 167 101 5 13 167 6 170 5.81e-19 81.6
MS.gene26865.t1 MTR_5g022600 31.737 167 100 5 13 167 6 170 1.00e-18 80.9
MS.gene26865.t1 MTR_8g075240 31.737 167 100 5 13 167 6 170 2.40e-18 79.7
MS.gene26865.t1 MTR_3g053480 55.172 58 23 1 1 55 1 58 7.03e-16 69.7
MS.gene26865.t1 MTR_1686s0010 32.609 92 62 0 33 124 1 92 2.82e-15 68.9
MS.gene26865.t1 MTR_3g078260 34.483 116 73 3 13 127 8 121 3.35e-15 70.5
MS.gene26865.t1 MTR_8g099250 55.172 58 23 1 1 55 1 58 2.96e-14 65.5
MS.gene26865.t1 MTR_1g059590 30.058 173 111 4 10 182 428 590 3.35e-14 71.2
MS.gene26865.t1 MTR_1g059590 30.058 173 111 4 10 182 395 557 3.75e-14 70.9
MS.gene26865.t1 MTR_5g092060 23.958 192 137 4 3 187 95 284 2.43e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26865.t1 AT5G60860 92.130 216 17 0 1 216 1 216 4.89e-152 421
MS.gene26865.t1 AT3G15060 88.479 217 25 0 1 217 1 217 1.90e-146 407
MS.gene26865.t1 AT1G28550 86.697 218 28 1 1 217 1 218 8.95e-143 397
MS.gene26865.t1 AT2G33870 85.714 217 30 1 1 216 1 217 2.00e-140 391
MS.gene26865.t1 AT4G18430 82.488 217 38 0 1 217 1 217 7.59e-140 390
MS.gene26865.t1 AT4G18800 82.028 217 34 2 1 216 1 213 4.00e-129 363
MS.gene26865.t1 AT5G45750 80.645 217 39 2 1 216 1 215 2.27e-127 358
MS.gene26865.t1 AT1G16920 77.419 217 46 2 1 216 1 215 1.22e-121 344
MS.gene26865.t1 AT1G06400 74.194 217 53 2 1 216 1 215 1.42e-118 336
MS.gene26865.t1 AT1G09630 67.742 217 66 2 3 217 2 216 9.73e-108 308
MS.gene26865.t1 AT1G07410 66.047 215 69 2 3 216 2 213 3.10e-104 300
MS.gene26865.t1 AT5G59150 66.055 218 67 3 3 216 2 216 4.13e-100 289
MS.gene26865.t1 AT3G46830 65.138 218 69 3 4 217 3 217 7.59e-99 286
MS.gene26865.t1 AT3G46830 65.138 218 69 3 4 217 3 217 7.59e-99 286
MS.gene26865.t1 AT3G12160 61.722 209 74 2 11 215 13 219 2.43e-93 272
MS.gene26865.t1 AT5G47960 63.507 211 68 3 11 215 13 220 1.58e-92 270
MS.gene26865.t1 AT4G39990 58.095 210 84 3 11 217 15 223 2.57e-87 257
MS.gene26865.t1 AT5G65270 57.075 212 86 1 11 217 15 226 1.26e-85 253
MS.gene26865.t1 AT5G47520 54.955 222 94 3 1 217 1 221 5.33e-84 249
MS.gene26865.t1 AT2G43130 55.093 216 88 3 6 216 2 213 5.40e-79 236
MS.gene26865.t1 AT1G05810 56.604 212 83 3 11 217 10 217 9.23e-79 235
MS.gene26865.t1 AT1G73640 59.574 188 75 1 7 193 7 194 9.32e-79 236
MS.gene26865.t1 AT1G05810 55.405 222 88 4 3 217 46 263 1.99e-78 236
MS.gene26865.t1 AT2G31680 54.067 209 94 1 11 217 10 218 1.19e-77 233
MS.gene26865.t1 AT1G18200 60.571 175 69 0 7 181 7 181 2.14e-76 229
MS.gene26865.t1 AT3G07410 55.072 207 92 1 11 216 10 216 7.14e-76 228
MS.gene26865.t1 AT1G01200 56.132 212 88 3 11 217 26 237 4.43e-75 226
MS.gene26865.t1 AT5G59150 62.048 166 56 3 55 216 3 165 7.72e-66 201
MS.gene26865.t1 AT4G17170 46.411 209 110 1 10 216 3 211 1.68e-64 199
MS.gene26865.t1 AT4G35860 44.498 209 114 1 10 216 3 211 6.55e-63 195
MS.gene26865.t1 AT4G17160 44.660 206 110 1 10 215 3 204 3.89e-62 192
MS.gene26865.t1 AT1G02130 45.972 211 103 2 7 216 2 202 3.07e-59 185
MS.gene26865.t1 AT4G17530 44.076 211 108 1 7 217 2 202 6.68e-58 182
MS.gene26865.t1 AT5G47200 44.076 211 108 1 7 217 2 202 1.20e-57 181
MS.gene26865.t1 AT5G03520 44.907 216 107 4 5 216 7 214 1.40e-55 176
MS.gene26865.t1 AT3G46060 44.811 212 104 4 9 215 11 214 3.10e-55 175
MS.gene26865.t1 AT3G46060 44.811 212 104 4 9 215 11 214 3.10e-55 175
MS.gene26865.t1 AT3G46060 44.811 212 104 4 9 215 11 214 3.10e-55 175
MS.gene26865.t1 AT3G53610 43.396 212 107 3 9 215 11 214 7.32e-55 174
MS.gene26865.t1 AT3G53610 43.396 212 107 3 9 215 11 214 7.32e-55 174
MS.gene26865.t1 AT3G53610 43.396 212 107 3 9 215 11 214 7.32e-55 174
MS.gene26865.t1 AT5G59840 43.458 214 108 4 9 217 11 216 1.11e-54 174
MS.gene26865.t1 AT3G09900 43.519 216 112 3 5 216 7 216 3.76e-53 170
MS.gene26865.t1 AT3G11730 42.857 210 109 3 8 215 3 203 3.92e-53 170
MS.gene26865.t1 AT5G45130 40.594 202 107 3 15 216 12 200 8.86e-51 164
MS.gene26865.t1 AT1G43890 46.739 184 95 3 1 182 1 183 8.66e-50 161
MS.gene26865.t1 AT1G43890 46.739 184 95 3 1 182 1 183 8.66e-50 161
MS.gene26865.t1 AT1G43890 46.739 184 95 3 1 182 1 183 8.66e-50 161
MS.gene26865.t1 AT4G19640 44.785 163 90 0 15 177 12 174 9.05e-50 161
MS.gene26865.t1 AT5G45130 40.500 200 106 3 17 216 22 208 1.41e-49 160
MS.gene26865.t1 AT3G54840 46.012 163 87 1 15 176 35 197 1.79e-47 155
MS.gene26865.t1 AT5G03530 41.892 222 111 6 1 216 1 210 3.32e-47 155
MS.gene26865.t1 AT5G03530 41.892 222 111 6 1 216 1 210 3.32e-47 155
MS.gene26865.t1 AT3G54840 45.679 162 87 1 16 176 2 163 5.48e-47 153
MS.gene26865.t1 AT3G54840 47.403 154 80 1 15 167 35 188 6.11e-46 151
MS.gene26865.t1 AT4G35860 40.854 164 95 1 55 216 2 165 5.16e-44 145
MS.gene26865.t1 AT2G44610 33.679 193 110 1 14 206 10 184 1.72e-40 137
MS.gene26865.t1 AT2G22290 36.306 157 100 0 14 170 10 166 3.73e-40 137
MS.gene26865.t1 AT4G19640 47.328 131 69 0 15 145 12 142 1.28e-39 135
MS.gene26865.t1 AT4G39890 36.709 158 99 1 14 170 10 167 1.71e-39 135
MS.gene26865.t1 AT4G19640 46.875 128 68 0 15 142 12 139 3.31e-39 132
MS.gene26865.t1 AT5G03520 41.040 173 90 4 48 216 40 204 4.43e-39 134
MS.gene26865.t1 AT3G09910 39.726 219 116 6 1 217 1 205 1.77e-38 132
MS.gene26865.t1 AT3G09910 39.726 219 116 6 1 217 1 205 1.77e-38 132
MS.gene26865.t1 AT3G09910 39.726 219 116 6 1 217 1 205 1.77e-38 132
MS.gene26865.t1 AT5G10260 31.606 193 114 1 14 206 10 184 2.17e-38 132
MS.gene26865.t1 AT1G22740 40.741 162 89 3 13 167 8 169 4.19e-38 131
MS.gene26865.t1 AT3G18820 36.667 210 112 7 13 214 8 204 4.45e-38 131
MS.gene26865.t1 AT1G52280 39.881 168 93 4 13 173 8 174 7.31e-38 130
MS.gene26865.t1 AT3G09910 40.816 196 105 4 1 194 1 187 1.60e-37 129
MS.gene26865.t1 AT3G09910 40.816 196 105 4 1 194 1 187 1.60e-37 129
MS.gene26865.t1 AT2G21880 40.000 165 92 3 13 170 9 173 6.10e-37 129
MS.gene26865.t1 AT5G64990 34.161 161 106 0 14 174 8 168 1.18e-36 127
MS.gene26865.t1 AT3G16100 39.506 162 91 3 13 167 8 169 3.30e-36 126
MS.gene26865.t1 AT5G46025 57.547 106 44 1 75 179 6 111 8.45e-36 122
MS.gene26865.t1 AT4G09720 38.788 165 94 3 13 170 8 172 1.54e-35 125
MS.gene26865.t1 AT1G49300 33.971 209 119 5 13 214 8 204 4.86e-35 123
MS.gene26865.t1 AT1G49300 33.971 209 119 5 13 214 8 204 4.86e-35 123
MS.gene26865.t1 AT4G09720 37.059 170 95 3 13 170 8 177 4.36e-34 121
MS.gene26865.t1 AT5G64990 32.738 168 106 1 14 174 8 175 6.20e-34 120
MS.gene26865.t1 AT5G39620 39.024 164 93 3 14 170 6 169 1.96e-33 119
MS.gene26865.t1 AT4G09720 35.795 176 95 3 13 170 8 183 4.39e-33 119
MS.gene26865.t1 AT2G21880 37.162 148 86 3 30 170 1 148 6.99e-28 104
MS.gene26865.t1 AT2G21880 37.162 148 86 3 30 170 1 148 6.99e-28 104
MS.gene26865.t1 AT2G21880 35.152 165 92 4 13 170 9 165 4.25e-27 103
MS.gene26865.t1 AT5G20010 30.526 190 126 4 14 203 14 197 3.69e-26 101
MS.gene26865.t1 AT5G20020 30.000 190 127 4 14 203 14 197 4.01e-26 100
MS.gene26865.t1 AT5G55190 30.256 195 130 4 14 208 14 202 4.56e-26 100
MS.gene26865.t1 AT5G55080 30.899 178 117 4 14 191 14 185 1.15e-25 99.8
MS.gene26865.t1 AT4G09720 36.957 138 80 3 40 170 1 138 3.37e-24 94.7
MS.gene26865.t1 AT4G09720 36.957 138 80 3 40 170 1 138 3.37e-24 94.7
MS.gene26865.t1 AT4G09720 36.957 138 80 3 40 170 1 138 3.37e-24 94.7
MS.gene26865.t1 AT2G44690 31.667 180 109 5 13 180 18 195 1.76e-21 88.6
MS.gene26865.t1 AT4G08190 56.338 71 28 1 97 167 60 127 2.15e-20 83.6
MS.gene26865.t1 AT4G35020 34.667 150 88 4 13 161 6 146 2.16e-20 85.5
MS.gene26865.t1 AT4G35020 34.667 150 88 4 13 161 6 146 2.16e-20 85.5
MS.gene26865.t1 AT4G35020 34.667 150 88 4 13 161 6 146 2.16e-20 85.5
MS.gene26865.t1 AT4G28950 28.492 179 116 5 13 181 6 182 2.06e-19 83.2
MS.gene26865.t1 AT3G48040 30.601 183 109 6 13 183 8 184 3.16e-19 82.4
MS.gene26865.t1 AT5G45970 32.934 167 98 5 13 167 6 170 6.88e-19 81.6
MS.gene26865.t1 AT1G75840 36.667 120 73 3 13 131 6 123 9.44e-19 80.9
MS.gene26865.t1 AT1G20090 35.833 120 74 3 13 131 5 122 1.29e-18 80.5
MS.gene26865.t1 AT5G62880 29.545 176 110 5 13 176 8 181 1.52e-18 80.9
MS.gene26865.t1 AT3G51300 32.121 165 98 5 15 167 8 170 4.06e-18 79.3
MS.gene26865.t1 AT2G17800 35.833 120 74 3 13 131 6 123 9.15e-18 78.6
MS.gene26865.t1 AT2G17800 35.833 120 74 3 13 131 6 123 9.15e-18 78.6
MS.gene26865.t1 AT4G35950 35.833 120 74 3 13 131 6 123 1.01e-17 78.2
MS.gene26865.t1 AT3G48040 31.210 157 94 5 13 157 8 162 3.40e-17 76.6
MS.gene26865.t1 AT4G35020 36.066 122 75 3 15 135 8 127 5.33e-17 75.1
MS.gene26865.t1 AT4G35020 36.066 122 75 3 15 135 8 127 5.33e-17 75.1
MS.gene26865.t1 AT5G62880 35.000 120 75 3 13 131 8 125 8.00e-17 75.9

Find 39 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTTGTTAAAGCTCAGATT+TGG 0.353549 4.1:-22286288 MS.gene26865:CDS
GTGGTATTGATTGGTGATTC+AGG 0.360317 4.1:-22286421 MS.gene26865:CDS
CTATTCAAAGTGGTATTGAT+TGG 0.383098 4.1:-22286430 MS.gene26865:CDS
CTATCGTGTGGTAAGCAAAA+AGG 0.392175 4.1:-22285094 MS.gene26865:CDS
AAGCATTCATGTTGATGATA+AGG 0.404191 4.1:-22286308 MS.gene26865:CDS
GGTTGTTAAAGCTCAGATTT+GGG 0.406299 4.1:-22286287 MS.gene26865:CDS
ACATTAATCGTCTGTCCCTT+AGG 0.435771 4.1:+22285039 None:intergenic
AACATCGTCGTGATGCTTGT+AGG 0.462903 4.1:-22285264 MS.gene26865:CDS
GAAAGCACTTTCAACGTTCA+AGG 0.472065 4.1:+22285137 None:intergenic
TTGATTGGTGATTCAGGTGT+TGG 0.487252 4.1:-22286415 MS.gene26865:CDS
CCATGTTACATTTGAAAATG+TGG 0.513693 4.1:-22285325 MS.gene26865:CDS
GCTTACTATCGTGGAGCTGT+TGG 0.514723 4.1:-22285375 MS.gene26865:CDS
TGATCCAGCTGCTTTACCTA+AGG 0.527209 4.1:-22285055 MS.gene26865:CDS
AGGGACAGACGATTAATGTT+GGG 0.538607 4.1:-22285035 MS.gene26865:CDS
GTATCGGCTGTGAAGAAAGC+TGG 0.539767 4.1:-22285000 MS.gene26865:CDS
GGGATACTGCTGGTCAAGAA+AGG 0.539914 4.1:-22286267 MS.gene26865:intron
AAGGGACAGACGATTAATGT+TGG 0.545050 4.1:-22285036 MS.gene26865:CDS
CATTTGAAAATGTGGAGAGA+TGG 0.551036 4.1:-22285317 MS.gene26865:CDS
CTCGAATCTAAATCCACCAT+TGG 0.555704 4.1:-22286349 MS.gene26865:CDS
CTGGATCATCACCAATCTCA+AGG 0.559042 4.1:+22285070 None:intergenic
TTTCAACGTTCAAGGACTCA+AGG 0.559306 4.1:+22285145 None:intergenic
GCTCAGATTTGGGATACTGC+TGG 0.571910 4.1:-22286277 MS.gene26865:CDS
TGTCCCTTAGGTAAAGCAGC+TGG 0.572395 4.1:+22285051 None:intergenic
AGTAAGCACTTGTAATTGCT+CGG 0.574407 4.1:+22285391 None:intergenic
AGCGAATTCAACACCAATGG+TGG 0.577629 4.1:+22286336 None:intergenic
TACAAGCATCACGACGATGT+TGG 0.583030 4.1:+22285266 None:intergenic
TGGGTCCCGTGATGATGTAT+CGG 0.586366 4.1:-22285016 MS.gene26865:CDS
CACAGCCGATACATCATCAC+GGG 0.588334 4.1:+22285011 None:intergenic
TAGATAATCGTAATCATCGT+CGG 0.591501 4.1:+22286450 None:intergenic
GATCCAGCTGCTTTACCTAA+GGG 0.596088 4.1:-22285054 MS.gene26865:CDS
ATAGATCTGCGTCAACACTT+CGG 0.604271 4.1:+22285113 None:intergenic
ATTACAAGTGCTTACTATCG+TGG 0.615261 4.1:-22285384 MS.gene26865:CDS
TTACGATTATCTATTCAAAG+TGG 0.630384 4.1:-22286440 MS.gene26865:CDS
TGGATCATCACCAATCTCAA+GGG 0.633161 4.1:+22285071 None:intergenic
TTCAACGTTCAAGGACTCAA+GGG 0.634550 4.1:+22285146 None:intergenic
AAACTGCTCGTAAATGACGC+AGG 0.673148 4.1:+22285229 None:intergenic
TCACAGCCGATACATCATCA+CGG 0.674525 4.1:+22285010 None:intergenic
AGTAGCGAATTCAACACCAA+TGG 0.678218 4.1:+22286333 None:intergenic
GTTGACGCAGATCTATCGTG+TGG 0.716753 4.1:-22285106 MS.gene26865:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTAATATTCCATTTT+TGG - chr4.1:22285831-22285850 MS.gene26865:intron 15.0%
!! AAAATGTAATTCACCAAAAA+TGG + chr4.1:22285847-22285866 None:intergenic 20.0%
!! TGTAGTAATTTATAGCAAAA+TGG - chr4.1:22285246-22285265 MS.gene26865:CDS 20.0%
!!! AAAAGTTGATAAAATACAGT+AGG + chr4.1:22285995-22286014 None:intergenic 20.0%
!!! AAAGTTGATAAAATACAGTA+GGG + chr4.1:22285994-22286013 None:intergenic 20.0%
!!! ATTTTTGGTGAATTACATTT+TGG - chr4.1:22285846-22285865 MS.gene26865:intron 20.0%
!!! TTGTAAGTTATTTGGTAATT+TGG - chr4.1:22285269-22285288 MS.gene26865:CDS 20.0%
! CAAAAAATTGTGGTTACAAA+CGG + chr4.1:22285662-22285681 None:intergenic 25.0%
! CAAAATGGTTGTAAGTTATT+TGG - chr4.1:22285261-22285280 MS.gene26865:CDS 25.0%
! CAATGCACTTAATTGTTAAA+CGG - chr4.1:22285714-22285733 MS.gene26865:intron 25.0%
! CATTAACTGTTGAATAATAG+AGG - chr4.1:22285303-22285322 MS.gene26865:CDS 25.0%
! GTTTAACAATTAAGTGCATT+GGG + chr4.1:22285715-22285734 None:intergenic 25.0%
! TAAACCTAATGATTAAGCAT+CGG - chr4.1:22285419-22285438 MS.gene26865:intron 25.0%
! TTACGATTATCTATTCAAAG+TGG - chr4.1:22285010-22285029 MS.gene26865:CDS 25.0%
! TTTGCTTCAAATCTACATTT+CGG + chr4.1:22285457-22285476 None:intergenic 25.0%
!! AGTTATTTGGTAATTTGGTT+AGG - chr4.1:22285274-22285293 MS.gene26865:CDS 25.0%
!! GTTATTTGGTAATTTGGTTA+GGG - chr4.1:22285275-22285294 MS.gene26865:CDS 25.0%
!! TTTTGATATTTTCATGTTGG+TGG + chr4.1:22285619-22285638 None:intergenic 25.0%
!!! GTAACCACAATTTTTTGATA+AGG - chr4.1:22285665-22285684 MS.gene26865:intron 25.0%
AATTAGGATGAGGAAGTTAA+AGG + chr4.1:22285886-22285905 None:intergenic 30.0%
AATTGTTAAACGGTTTATCC+AGG - chr4.1:22285724-22285743 MS.gene26865:intron 30.0%
AGAAAAACTTGTAGCATCTT+CGG + chr4.1:22286250-22286269 None:intergenic 30.0%
AGGCTGTCAAATTACTAAAA+AGG - chr4.1:22285906-22285925 MS.gene26865:intron 30.0%
AGTAATTTGACAGCCTAATT+AGG + chr4.1:22285902-22285921 None:intergenic 30.0%
CCATGTTACATTTGAAAATG+TGG - chr4.1:22286125-22286144 MS.gene26865:intron 30.0%
CGTTTAACAATTAAGTGCAT+TGG + chr4.1:22285716-22285735 None:intergenic 30.0%
GTTGCCTTATCAAAAAATTG+TGG + chr4.1:22285672-22285691 None:intergenic 30.0%
TAGATAATCGTAATCATCGT+CGG + chr4.1:22285003-22285022 None:intergenic 30.0%
TTAACTTCCTCATCCTAATT+AGG - chr4.1:22285886-22285905 MS.gene26865:intron 30.0%
! ACGGGAGAATACATATTTTA+TGG - chr4.1:22286272-22286291 MS.gene26865:CDS 30.0%
! ATGCTACAAGTTTTTCTGAA+CGG - chr4.1:22286253-22286272 MS.gene26865:intron 30.0%
! ATTTTCAAATGTAACATGGC+GGG + chr4.1:22286124-22286143 None:intergenic 30.0%
! CATTTTCAAATGTAACATGG+CGG + chr4.1:22286125-22286144 None:intergenic 30.0%
! CCACATTTTCAAATGTAACA+TGG + chr4.1:22286128-22286147 None:intergenic 30.0%
!! AAGCATTCATGTTGATGATA+AGG - chr4.1:22285142-22285161 MS.gene26865:CDS 30.0%
!! CGGTTTTGATATTTTCATGT+TGG + chr4.1:22285622-22285641 None:intergenic 30.0%
!! CTATTCAAAGTGGTATTGAT+TGG - chr4.1:22285020-22285039 MS.gene26865:CDS 30.0%
!!! AGTTTGCTTTTTTTCACTGA+AGG - chr4.1:22286034-22286053 MS.gene26865:intron 30.0%
AACAATTAAGTGCATTGGGT+GGG + chr4.1:22285711-22285730 None:intergenic 35.0%
ACTTTCATTTCAGCCATTCA+TGG + chr4.1:22285374-22285393 None:intergenic 35.0%
AGGGTAGATCATTAGTAACA+TGG + chr4.1:22285975-22285994 None:intergenic 35.0%
AGGTTGTTAAAGCTCAGATT+TGG - chr4.1:22285162-22285181 MS.gene26865:CDS 35.0%
AGTAAGCACTTGTAATTGCT+CGG + chr4.1:22286062-22286081 None:intergenic 35.0%
ATTACAAGTGCTTACTATCG+TGG - chr4.1:22286066-22286085 MS.gene26865:intron 35.0%
CATTTGAAAATGTGGAGAGA+TGG - chr4.1:22286133-22286152 MS.gene26865:intron 35.0%
CTGCTATTACGAATGTCATT+TGG - chr4.1:22285344-22285363 MS.gene26865:CDS 35.0%
GGTTGTTAAAGCTCAGATTT+GGG - chr4.1:22285163-22285182 MS.gene26865:CDS 35.0%
TAACAATTAAGTGCATTGGG+TGG + chr4.1:22285712-22285731 None:intergenic 35.0%
! TGCTACAAGTTTTTCTGAAC+GGG - chr4.1:22286254-22286273 MS.gene26865:intron 35.0%
! TTCGAGACTGAATTCGTTTT+TGG + chr4.1:22285087-22285106 None:intergenic 35.0%
AAGGGACAGACGATTAATGT+TGG - chr4.1:22286414-22286433 MS.gene26865:CDS 40.0%
ACATTAATCGTCTGTCCCTT+AGG + chr4.1:22286414-22286433 None:intergenic 40.0%
AGGGACAGACGATTAATGTT+GGG - chr4.1:22286415-22286434 MS.gene26865:CDS 40.0%
AGTAGCGAATTCAACACCAA+TGG + chr4.1:22285120-22285139 None:intergenic 40.0%
ATAGATCTGCGTCAACACTT+CGG + chr4.1:22286340-22286359 None:intergenic 40.0%
CTATCGTGTGGTAAGCAAAA+AGG - chr4.1:22286356-22286375 MS.gene26865:CDS 40.0%
CTCGAATCTAAATCCACCAT+TGG - chr4.1:22285101-22285120 MS.gene26865:CDS 40.0%
TAAACGGTTTATCCAGGTTG+CGG - chr4.1:22285730-22285749 MS.gene26865:intron 40.0%
TGGATCATCACCAATCTCAA+GGG + chr4.1:22286382-22286401 None:intergenic 40.0%
TTCAACGTTCAAGGACTCAA+GGG + chr4.1:22286307-22286326 None:intergenic 40.0%
TTGACAGCCTAATTAGGATG+AGG + chr4.1:22285896-22285915 None:intergenic 40.0%
TTGTCGAGCATTCTCACTTA+GGG + chr4.1:22285778-22285797 None:intergenic 40.0%
TTTCAACGTTCAAGGACTCA+AGG + chr4.1:22286308-22286327 None:intergenic 40.0%
! TTGATTGGTGATTCAGGTGT+TGG - chr4.1:22285035-22285054 MS.gene26865:CDS 40.0%
!! CCTAATGATTAAGCATCGGT+CGG - chr4.1:22285423-22285442 MS.gene26865:intron 40.0%
!! GAAAGCACTTTCAACGTTCA+AGG + chr4.1:22286316-22286335 None:intergenic 40.0%
!! GTGGTATTGATTGGTGATTC+AGG - chr4.1:22285029-22285048 MS.gene26865:CDS 40.0%
!!! TGCATTGGGTGGGTTATTTT+GGG + chr4.1:22285701-22285720 None:intergenic 40.0%
AAACTGCTCGTAAATGACGC+AGG + chr4.1:22286224-22286243 None:intergenic 45.0%
AACATCGTCGTGATGCTTGT+AGG - chr4.1:22286186-22286205 MS.gene26865:intron 45.0%
AGCAAAAAGGCCCTTGAGAT+TGG - chr4.1:22286369-22286388 MS.gene26865:CDS 45.0%
AGCAAGCTTGTGGTTTAGTC+GGG - chr4.1:22285511-22285530 MS.gene26865:intron 45.0%
AGCGAATTCAACACCAATGG+TGG + chr4.1:22285117-22285136 None:intergenic 45.0%
CCGACCGATGCTTAATCATT+AGG + chr4.1:22285426-22285445 None:intergenic 45.0%
CGAAACTGGGTGCATATTTC+AGG + chr4.1:22285487-22285506 None:intergenic 45.0%
CTGGATCATCACCAATCTCA+AGG + chr4.1:22286383-22286402 None:intergenic 45.0%
CTTGTCGAGCATTCTCACTT+AGG + chr4.1:22285779-22285798 None:intergenic 45.0%
GAGCAAGCTTGTGGTTTAGT+CGG - chr4.1:22285510-22285529 MS.gene26865:intron 45.0%
TACAAACGGTTGAACGTGGT+CGG + chr4.1:22285648-22285667 None:intergenic 45.0%
TACAAGCATCACGACGATGT+TGG + chr4.1:22286187-22286206 None:intergenic 45.0%
TCACAGCCGATACATCATCA+CGG + chr4.1:22286443-22286462 None:intergenic 45.0%
TGGTTACAAACGGTTGAACG+TGG + chr4.1:22285652-22285671 None:intergenic 45.0%
TGTCGAGCATTCTCACTTAG+GGG + chr4.1:22285777-22285796 None:intergenic 45.0%
! GACTAAACCACAAGCTTGCT+CGG + chr4.1:22285511-22285530 None:intergenic 45.0%
! GATCCAGCTGCTTTACCTAA+GGG - chr4.1:22286396-22286415 MS.gene26865:CDS 45.0%
! GGGTGCATATTTCAGGTCAT+CGG + chr4.1:22285480-22285499 None:intergenic 45.0%
! GTCATTTGGAGTGCCATGAA+TGG - chr4.1:22285358-22285377 MS.gene26865:CDS 45.0%
! TGATCCAGCTGCTTTACCTA+AGG - chr4.1:22286395-22286414 MS.gene26865:CDS 45.0%
!!! GATTAAGCATCGGTCGGTTT+TGG - chr4.1:22285429-22285448 MS.gene26865:intron 45.0%
!!! GTGCATTGGGTGGGTTATTT+TGG + chr4.1:22285702-22285721 None:intergenic 45.0%
CACAGCCGATACATCATCAC+GGG + chr4.1:22286442-22286461 None:intergenic 50.0%
GCTTACTATCGTGGAGCTGT+TGG - chr4.1:22286075-22286094 MS.gene26865:intron 50.0%
GGGATACTGCTGGTCAAGAA+AGG - chr4.1:22285183-22285202 MS.gene26865:CDS 50.0%
GTTGACGCAGATCTATCGTG+TGG - chr4.1:22286344-22286363 MS.gene26865:CDS 50.0%
TGTCCCTTAGGTAAAGCAGC+TGG + chr4.1:22286402-22286421 None:intergenic 50.0%
! AAGCTTGCTCGGTCGAAACT+GGG + chr4.1:22285500-22285519 None:intergenic 50.0%
! ATTCTCTGTGCGGTCGGTTT+GGG - chr4.1:22285590-22285609 MS.gene26865:intron 50.0%
! GCTCAGATTTGGGATACTGC+TGG - chr4.1:22285173-22285192 MS.gene26865:CDS 50.0%
! TGGGTCCCGTGATGATGTAT+CGG - chr4.1:22286434-22286453 MS.gene26865:CDS 50.0%
! TTTGCACGGGAGGGTTTGTT+TGG - chr4.1:22285556-22285575 MS.gene26865:intron 50.0%
!! GTATCGGCTGTGAAGAAAGC+TGG - chr4.1:22286450-22286469 MS.gene26865:CDS 50.0%
!!! GGGTGGGTTATTTTGGGCTT+CGG + chr4.1:22285695-22285714 None:intergenic 50.0%
!!! GGTGGGTTATTTTGGGCTTC+GGG + chr4.1:22285694-22285713 None:intergenic 50.0%
AGCGGAGAAGCTGTTTGCAC+GGG - chr4.1:22285543-22285562 MS.gene26865:intron 55.0%
CAGCGGAGAAGCTGTTTGCA+CGG - chr4.1:22285542-22285561 MS.gene26865:intron 55.0%
CATTCTCTGTGCGGTCGGTT+TGG - chr4.1:22285589-22285608 MS.gene26865:intron 55.0%
CGACACATTCTCTGTGCGGT+CGG - chr4.1:22285584-22285603 MS.gene26865:intron 55.0%
CGACCGCACAGAGAATGTGT+CGG + chr4.1:22285586-22285605 None:intergenic 55.0%
CTTGTGGTTTAGTCGGGTGC+GGG - chr4.1:22285517-22285536 MS.gene26865:intron 55.0%
GACCGCACAGAGAATGTGTC+GGG + chr4.1:22285585-22285604 None:intergenic 55.0%
GAGAAGCTGTTTGCACGGGA+GGG - chr4.1:22285547-22285566 MS.gene26865:intron 55.0%
GCTTGTGGTTTAGTCGGGTG+CGG - chr4.1:22285516-22285535 MS.gene26865:intron 55.0%
GTTTCGACCGAGCAAGCTTG+TGG - chr4.1:22285501-22285520 MS.gene26865:intron 55.0%
TATCCAGGTTGCGGTCGTCT+CGG - chr4.1:22285739-22285758 MS.gene26865:intron 55.0%
TGCCCGACACATTCTCTGTG+CGG - chr4.1:22285580-22285599 MS.gene26865:intron 55.0%
! CAAGCTTGCTCGGTCGAAAC+TGG + chr4.1:22285501-22285520 None:intergenic 55.0%
GGAGAAGCTGTTTGCACGGG+AGG - chr4.1:22285546-22285565 MS.gene26865:intron 60.0%
TTAGTCGGGTGCGGGTTCAG+CGG - chr4.1:22285525-22285544 MS.gene26865:intron 60.0%
! CGGTTGAACGTGGTCGGCTT+CGG + chr4.1:22285642-22285661 None:intergenic 60.0%
ACACCGAGACGACCGCAACC+TGG + chr4.1:22285745-22285764 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22284984 22286488 22284984 ID=MS.gene26865
chr4.1 mRNA 22284984 22286488 22284984 ID=MS.gene26865.t1;Parent=MS.gene26865
chr4.1 exon 22286268 22286488 22286268 ID=MS.gene26865.t1.exon1;Parent=MS.gene26865.t1
chr4.1 CDS 22286268 22286488 22286268 ID=cds.MS.gene26865.t1;Parent=MS.gene26865.t1
chr4.1 exon 22284984 22285416 22284984 ID=MS.gene26865.t1.exon2;Parent=MS.gene26865.t1
chr4.1 CDS 22284984 22285416 22284984 ID=cds.MS.gene26865.t1;Parent=MS.gene26865.t1
Gene Sequence

>MS.gene26865

ATGGGGGCATACAGAGCCGACGATGATTACGATTATCTATTCAAAGTGGTATTGATTGGTGATTCAGGTGTTGGTAAATCAAATCTTCTTTCTAGATTCACCAAAAACGAATTCAGTCTCGAATCTAAATCCACCATTGGTGTTGAATTCGCTACTAGAAGCATTCATGTTGATGATAAGGTTGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTATATATAAATCTCTATTTTCTTTTTTTTGTTGCATGTTTTGTAGTAATTTATAGCAAAATGGTTGTAAGTTATTTGGTAATTTGGTTAGGGTTGTGCATTAACTGTTGAATAATAGAGGAAATTACTAATGTAATGTCTGCTATTACGAATGTCATTTGGAGTGCCATGAATGGCTGAAATGAAAGTCAATATAGTAATGCTGTAAACAAGATAAACCTAATGATTAAGCATCGGTCGGTTTTGGTTCCGAAATGTAGATTTGAAGCAAACCGATGACCTGAAATATGCACCCAGTTTCGACCGAGCAAGCTTGTGGTTTAGTCGGGTGCGGGTTCAGCGGAGAAGCTGTTTGCACGGGAGGGTTTGTTTGGTTGCCCGACACATTCTCTGTGCGGTCGGTTTGGGTCACCACCAACATGAAAATATCAAAACCGAAGCCGACCACGTTCAACCGTTTGTAACCACAATTTTTTGATAAGGCAACCCGAAGCCCAAAATAACCCACCCAATGCACTTAATTGTTAAACGGTTTATCCAGGTTGCGGTCGTCTCGGTGTTCTTGCTCACCCCTAAGTGAGAATGCTCGACAAGATATTAATAAATAAAAACAAAACTAAAAAGACAAAAGTTAATATTCCATTTTTGGTGAATTACATTTTGGTTGTTTGATGATATCCTTTAACTTCCTCATCCTAATTAGGCTGTCAAATTACTAAAAAGGCGAAAATAATGTGAATATAATTTAATAAGACTGTTTCTAGATTCCATGTTACTAATGATCTACCCTACTGTATTTTATCAACTTTTCATATTACATGTTTATCTTAGTTTGCTTTTTTTCACTGAAGGTACCGAGCAATTACAAGTGCTTACTATCGTGGAGCTGTTGGCGCTTTGTTAGTCTATGATGTTACCCGCCATGTTACATTTGAAAATGTGGAGAGATGGCTAAAAGAGCTGAGAGATCACACAGATGCCAACATCGTCGTGATGCTTGTAGGCAACAAAGCAGACCTGCGTCATTTACGAGCAGTTTCGACCGAAGATGCTACAAGTTTTTCTGAACGGGAGAATACATATTTTATGGAGACATCTGCCCTTGAGTCCTTGAACGTTGAAAGTGCTTTCACCGAAGTGTTGACGCAGATCTATCGTGTGGTAAGCAAAAAGGCCCTTGAGATTGGTGATGATCCAGCTGCTTTACCTAAGGGACAGACGATTAATGTTGGGTCCCGTGATGATGTATCGGCTGTGAAGAAAGCTGGATGTTGTTCTGCTTGA

Protein sequence

>MS.gene26865.t1

MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVVMLVGNKADLRHLRAVSTEDATSFSERENTYFMETSALESLNVESAFTEVLTQIYRVVSKKALEIGDDPAALPKGQTINVGSRDDVSAVKKAGCCSA