AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058973


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058973.t1 MTR_1g068730 99.537 216 1 0 1 216 1 216 1.83e-161 444
MS.gene058973.t1 MTR_1g068740 99.074 216 2 0 1 216 1 216 6.76e-161 443
MS.gene058973.t1 MTR_1g115325 91.220 205 18 0 11 215 11 215 1.26e-140 392
MS.gene058973.t1 MTR_7g100020 94.175 206 12 0 11 216 11 216 1.58e-139 389
MS.gene058973.t1 MTR_4g063160 87.440 207 23 2 11 215 11 216 1.06e-132 372
MS.gene058973.t1 MTR_2g096550 75.926 216 48 3 1 215 1 213 6.99e-116 329
MS.gene058973.t1 MTR_1g068740 98.582 141 2 0 1 141 1 141 3.13e-100 289
MS.gene058973.t1 MTR_1g068730 97.872 141 3 0 1 141 1 141 4.70e-99 285
MS.gene058973.t1 MTR_7g081700 61.353 207 71 4 11 216 4 202 6.67e-86 253
MS.gene058973.t1 MTR_8g006970 59.314 204 77 2 13 216 20 217 7.89e-82 243
MS.gene058973.t1 MTR_8g006970 65.882 170 57 1 11 180 4 172 1.15e-78 234
MS.gene058973.t1 MTR_2g005500 53.555 211 86 4 8 215 2 203 1.70e-78 234
MS.gene058973.t1 MTR_4g099470 53.846 182 73 4 37 216 6 178 1.00e-65 201
MS.gene058973.t1 MTR_4g064897 42.523 214 117 3 7 216 4 215 3.30e-59 185
MS.gene058973.t1 MTR_6g021790 44.498 209 109 3 12 214 3 210 2.49e-58 183
MS.gene058973.t1 MTR_2g027660 44.976 209 107 3 12 213 3 210 4.43e-58 182
MS.gene058973.t1 MTR_3g069510 45.070 213 104 5 10 214 7 214 8.15e-58 182
MS.gene058973.t1 MTR_2g014990 45.413 218 106 5 7 216 5 217 1.09e-56 179
MS.gene058973.t1 MTR_2g005510 42.654 211 115 2 11 216 11 220 1.20e-56 179
MS.gene058973.t1 MTR_4g079350 45.662 219 104 5 7 216 5 217 2.27e-56 178
MS.gene058973.t1 MTR_7g103070 47.115 208 98 5 12 214 13 213 5.50e-56 177
MS.gene058973.t1 MTR_1g062760 48.558 208 94 6 12 214 11 210 5.66e-56 177
MS.gene058973.t1 MTR_8g031660 43.062 209 107 3 12 214 3 205 1.02e-55 176
MS.gene058973.t1 MTR_4g088090 44.292 219 107 5 7 216 5 217 1.62e-55 176
MS.gene058973.t1 MTR_1g078200 42.453 212 111 2 13 214 12 222 1.63e-55 176
MS.gene058973.t1 MTR_2g075950 50.292 171 84 1 7 177 5 174 9.13e-55 174
MS.gene058973.t1 MTR_3g086980 41.589 214 117 4 8 214 9 221 8.00e-54 172
MS.gene058973.t1 MTR_8g089985 41.667 216 109 4 13 216 15 225 1.31e-53 171
MS.gene058973.t1 MTR_1g029450 45.933 209 100 7 11 214 13 213 3.06e-53 170
MS.gene058973.t1 MTR_8g031870 48.485 165 84 1 14 178 5 168 4.16e-53 169
MS.gene058973.t1 MTR_7g051940 43.627 204 111 3 14 214 12 214 5.05e-53 170
MS.gene058973.t1 MTR_2g083860 48.538 171 87 1 7 177 5 174 5.83e-53 169
MS.gene058973.t1 MTR_8g093740 44.811 212 103 8 8 214 6 208 7.12e-52 166
MS.gene058973.t1 MTR_2g090865 42.453 212 112 3 11 216 7 214 7.71e-52 167
MS.gene058973.t1 MTR_8g031680 41.905 210 112 5 12 214 3 209 1.48e-51 166
MS.gene058973.t1 MTR_1g090717 44.240 217 112 6 1 214 1 211 2.48e-51 165
MS.gene058973.t1 MTR_3g096350 44.976 209 101 7 11 214 8 207 3.02e-51 165
MS.gene058973.t1 MTR_8g027220 46.061 165 88 1 13 177 24 187 2.45e-50 163
MS.gene058973.t1 MTR_1g052475 39.720 214 115 4 13 215 13 223 4.44e-50 162
MS.gene058973.t1 MTR_8g036220 42.439 205 112 3 13 213 14 216 6.23e-50 162
MS.gene058973.t1 MTR_7g405790 40.097 207 117 4 14 214 14 219 1.45e-49 161
MS.gene058973.t1 MTR_6g079550 40.291 206 118 2 13 214 10 214 4.68e-49 159
MS.gene058973.t1 MTR_8g031830 48.718 156 79 1 14 169 5 159 5.37e-49 159
MS.gene058973.t1 MTR_0262s0050 44.848 165 90 1 13 177 13 176 4.38e-47 155
MS.gene058973.t1 MTR_3g064390 38.693 199 110 4 17 214 12 199 4.55e-46 151
MS.gene058973.t1 MTR_8g103550 42.697 178 97 2 8 185 2 174 5.50e-46 151
MS.gene058973.t1 MTR_1g094220 44.242 165 90 2 16 179 32 195 4.64e-45 149
MS.gene058973.t1 MTR_5g076590 37.688 199 112 4 17 214 12 199 8.20e-45 148
MS.gene058973.t1 MTR_8g107070 49.068 161 81 1 13 173 12 171 2.79e-44 149
MS.gene058973.t1 MTR_2g005500 38.863 211 77 5 8 215 2 163 3.14e-44 145
MS.gene058973.t1 MTR_1g094220 45.283 159 85 2 16 173 32 189 7.86e-44 146
MS.gene058973.t1 MTR_1g094220 45.513 156 83 2 16 170 32 186 2.41e-43 145
MS.gene058973.t1 MTR_1g094220 45.513 156 83 2 16 170 32 186 3.50e-43 145
MS.gene058973.t1 MTR_7g117910 37.089 213 116 4 7 213 12 212 1.83e-42 142
MS.gene058973.t1 MTR_2g102060 40.860 186 104 3 17 201 12 192 3.19e-41 139
MS.gene058973.t1 MTR_3g096350 52.846 123 55 3 11 131 8 129 7.51e-41 136
MS.gene058973.t1 MTR_8g090215 43.038 158 89 1 17 174 11 167 1.06e-40 138
MS.gene058973.t1 MTR_4g069850 39.409 203 109 7 5 198 2 199 1.20e-40 138
MS.gene058973.t1 MTR_3g096350 51.938 129 59 3 11 137 8 135 1.54e-40 136
MS.gene058973.t1 MTR_3g087160 37.563 197 120 2 17 213 11 204 4.05e-39 134
MS.gene058973.t1 MTR_5g013900 37.143 210 125 4 5 214 3 205 9.35e-39 133
MS.gene058973.t1 MTR_8g093740 48.062 129 64 3 44 170 8 135 2.30e-38 131
MS.gene058973.t1 MTR_7g103070 45.912 159 74 5 61 214 6 157 4.14e-38 130
MS.gene058973.t1 MTR_4g098950 39.412 170 98 2 5 174 3 167 7.94e-38 130
MS.gene058973.t1 MTR_8g092020 39.521 167 95 2 15 175 12 178 1.81e-36 127
MS.gene058973.t1 MTR_2g101890 36.098 205 120 5 15 213 10 209 1.96e-36 127
MS.gene058973.t1 MTR_4g012940 37.198 207 114 6 15 214 8 205 1.98e-36 127
MS.gene058973.t1 MTR_1g097420 38.922 167 96 2 15 175 8 174 5.49e-35 123
MS.gene058973.t1 MTR_6g039490 36.041 197 120 3 15 205 8 204 2.12e-34 122
MS.gene058973.t1 MTR_3g064390 40.496 121 72 0 17 137 12 132 2.72e-31 112
MS.gene058973.t1 MTR_1g097420 31.416 226 120 4 15 205 8 233 7.84e-29 108
MS.gene058973.t1 MTR_4g088055 34.132 167 97 5 15 170 6 170 9.33e-27 102
MS.gene058973.t1 MTR_4g073250 33.511 188 112 6 15 191 6 191 6.70e-26 99.8
MS.gene058973.t1 MTR_2g090875 33.533 167 98 5 15 170 6 170 6.97e-26 99.8
MS.gene058973.t1 MTR_1g059590 40.588 170 90 4 10 179 393 551 3.63e-25 102
MS.gene058973.t1 MTR_1g059590 40.588 170 90 4 10 179 426 584 3.71e-25 102
MS.gene058973.t1 MTR_3g078260 32.934 167 99 5 15 170 8 172 7.20e-25 97.4
MS.gene058973.t1 MTR_3g107707 28.866 194 129 5 3 192 2 190 5.24e-24 95.5
MS.gene058973.t1 MTR_3g107713 28.866 194 129 5 3 192 2 190 6.08e-24 95.1
MS.gene058973.t1 MTR_3g107717 28.866 194 129 5 3 192 2 190 6.27e-24 95.1
MS.gene058973.t1 MTR_8g075240 32.934 167 99 6 15 170 6 170 1.81e-23 93.2
MS.gene058973.t1 MTR_6g087980 31.737 167 101 5 15 170 6 170 2.43e-23 93.2
MS.gene058973.t1 MTR_5g022600 32.934 167 99 6 15 170 6 170 4.80e-23 92.4
MS.gene058973.t1 MTR_8g031810 40.952 105 48 1 14 118 5 95 4.38e-22 86.7
MS.gene058973.t1 MTR_3g078260 34.483 116 73 3 15 129 8 121 1.41e-18 79.3
MS.gene058973.t1 MTR_4g113620 27.778 162 104 4 16 177 14 162 8.78e-18 78.6
MS.gene058973.t1 MTR_1452s0010 47.143 70 37 0 40 109 6 75 1.34e-17 75.5
MS.gene058973.t1 MTR_1686s0010 40.000 70 42 0 40 109 6 75 6.79e-14 65.5
MS.gene058973.t1 MTR_5g092060 26.190 168 114 4 10 170 98 262 4.60e-13 67.0
MS.gene058973.t1 MTR_2g078000 50.000 46 23 0 76 121 46 91 4.37e-12 60.8
MS.gene058973.t1 MTR_5g078090 30.488 164 95 6 16 170 20 173 7.40e-12 62.0
MS.gene058973.t1 MTR_1g069245 39.744 78 46 1 44 121 122 198 1.25e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058973.t1 AT3G53610 89.806 206 21 0 11 216 11 216 1.62e-141 394
MS.gene058973.t1 AT3G53610 89.806 206 21 0 11 216 11 216 1.62e-141 394
MS.gene058973.t1 AT3G53610 89.806 206 21 0 11 216 11 216 1.62e-141 394
MS.gene058973.t1 AT5G59840 90.291 206 20 0 11 216 11 216 1.36e-140 392
MS.gene058973.t1 AT3G46060 89.320 206 22 0 11 216 11 216 5.59e-140 390
MS.gene058973.t1 AT3G46060 89.320 206 22 0 11 216 11 216 5.59e-140 390
MS.gene058973.t1 AT3G46060 89.320 206 22 0 11 216 11 216 5.59e-140 390
MS.gene058973.t1 AT5G03520 84.579 214 32 1 1 214 1 213 5.72e-128 360
MS.gene058973.t1 AT3G09900 84.186 215 33 1 1 214 1 215 2.10e-127 358
MS.gene058973.t1 AT5G03520 82.424 165 28 1 50 214 40 203 3.32e-100 289
MS.gene058973.t1 AT1G02130 59.330 209 73 4 11 216 4 203 9.45e-87 255
MS.gene058973.t1 AT4G17530 58.654 208 75 4 11 216 4 202 7.09e-83 245
MS.gene058973.t1 AT5G47200 58.654 208 75 4 11 216 4 202 1.66e-82 244
MS.gene058973.t1 AT3G11730 56.190 210 80 4 10 215 3 204 1.09e-79 237
MS.gene058973.t1 AT4G35860 47.143 210 104 3 12 215 3 211 2.06e-63 196
MS.gene058973.t1 AT4G17160 46.602 206 105 3 12 215 3 205 1.77e-62 193
MS.gene058973.t1 AT4G17170 46.190 210 106 4 12 215 3 211 8.13e-61 189
MS.gene058973.t1 AT1G09630 43.458 214 116 2 7 216 4 216 5.02e-60 187
MS.gene058973.t1 AT1G07410 42.056 214 117 3 7 216 4 214 9.77e-58 182
MS.gene058973.t1 AT3G07410 45.411 207 107 3 13 214 10 215 1.73e-57 181
MS.gene058973.t1 AT4G18430 43.981 216 108 4 7 214 5 215 3.54e-57 180
MS.gene058973.t1 AT5G59150 48.538 171 87 1 7 177 4 173 7.18e-57 179
MS.gene058973.t1 AT1G16920 49.708 171 85 1 7 177 5 174 2.07e-56 178
MS.gene058973.t1 AT4G39990 44.340 212 107 4 13 216 15 223 3.81e-56 178
MS.gene058973.t1 AT3G46830 42.326 215 118 3 7 216 4 217 3.83e-56 177
MS.gene058973.t1 AT3G46830 42.326 215 118 3 7 216 4 217 3.83e-56 177
MS.gene058973.t1 AT2G43130 42.157 204 115 2 13 214 10 212 3.25e-55 175
MS.gene058973.t1 AT5G60860 44.186 215 113 4 7 216 5 217 8.30e-55 174
MS.gene058973.t1 AT5G45750 43.192 213 113 4 7 214 5 214 9.48e-55 174
MS.gene058973.t1 AT1G28550 44.240 217 111 4 7 216 5 218 1.85e-54 173
MS.gene058973.t1 AT3G15060 44.690 226 106 6 1 216 1 217 1.94e-54 173
MS.gene058973.t1 AT1G01200 46.893 177 94 0 13 189 26 202 4.14e-54 173
MS.gene058973.t1 AT1G05810 42.857 210 112 4 13 216 10 217 7.27e-54 172
MS.gene058973.t1 AT5G47520 42.991 214 108 4 13 216 12 221 8.31e-54 172
MS.gene058973.t1 AT4G18800 43.602 211 113 3 7 214 5 212 1.17e-53 171
MS.gene058973.t1 AT2G33870 42.791 215 117 3 7 216 5 218 1.17e-53 171
MS.gene058973.t1 AT1G05810 42.857 210 112 4 13 216 56 263 1.83e-53 172
MS.gene058973.t1 AT5G65270 40.845 213 116 4 13 216 15 226 8.74e-53 169
MS.gene058973.t1 AT2G31680 42.381 210 114 3 13 216 10 218 1.39e-52 169
MS.gene058973.t1 AT1G06400 47.399 173 90 1 7 179 5 176 2.39e-52 168
MS.gene058973.t1 AT5G47960 41.232 211 116 3 13 216 13 222 3.81e-52 168
MS.gene058973.t1 AT5G03530 45.755 212 102 7 8 214 6 209 5.47e-52 167
MS.gene058973.t1 AT5G03530 45.755 212 102 7 8 214 6 209 5.47e-52 167
MS.gene058973.t1 AT1G73640 46.114 193 99 2 13 201 11 202 1.82e-51 166
MS.gene058973.t1 AT1G43890 50.299 167 79 4 6 170 4 168 2.96e-51 165
MS.gene058973.t1 AT1G43890 50.299 167 79 4 6 170 4 168 2.96e-51 165
MS.gene058973.t1 AT1G43890 50.299 167 79 4 6 170 4 168 2.96e-51 165
MS.gene058973.t1 AT1G18200 49.123 171 86 1 13 183 11 180 1.15e-50 164
MS.gene058973.t1 AT3G12160 41.148 209 116 3 13 215 13 220 1.45e-50 164
MS.gene058973.t1 AT3G54840 44.382 178 94 3 3 179 24 197 6.06e-48 156
MS.gene058973.t1 AT3G54840 46.154 169 86 3 3 170 24 188 1.78e-47 155
MS.gene058973.t1 AT3G54840 45.399 163 87 2 18 179 2 163 8.74e-47 152
MS.gene058973.t1 AT3G09910 45.946 185 96 4 8 190 6 188 3.17e-44 147
MS.gene058973.t1 AT3G09910 45.946 185 96 4 8 190 6 188 3.17e-44 147
MS.gene058973.t1 AT4G19640 38.693 199 112 4 17 215 12 200 4.60e-44 146
MS.gene058973.t1 AT4G35860 44.848 165 84 3 57 215 2 165 1.23e-43 144
MS.gene058973.t1 AT3G09910 47.701 174 87 4 8 179 6 177 4.99e-43 144
MS.gene058973.t1 AT3G09910 47.701 174 87 4 8 179 6 177 4.99e-43 144
MS.gene058973.t1 AT3G09910 47.701 174 87 4 8 179 6 177 4.99e-43 144
MS.gene058973.t1 AT5G45130 36.181 199 117 4 17 215 12 200 2.03e-41 139
MS.gene058973.t1 AT3G18820 38.140 215 117 6 5 213 2 206 2.57e-41 139
MS.gene058973.t1 AT4G39890 43.396 159 88 2 17 174 11 168 1.43e-40 138
MS.gene058973.t1 AT2G22290 37.879 198 120 2 17 214 11 205 2.04e-40 137
MS.gene058973.t1 AT5G45130 35.533 197 117 4 19 215 22 208 1.10e-39 135
MS.gene058973.t1 AT5G10260 37.688 199 121 3 17 215 11 206 1.10e-38 133
MS.gene058973.t1 AT1G52280 38.537 205 114 5 15 213 8 206 1.35e-38 132
MS.gene058973.t1 AT4G09720 38.974 195 111 3 15 201 8 202 2.86e-38 132
MS.gene058973.t1 AT1G49300 35.814 215 122 6 5 213 2 206 4.45e-38 131
MS.gene058973.t1 AT1G49300 35.814 215 122 6 5 213 2 206 4.45e-38 131
MS.gene058973.t1 AT2G44610 35.714 210 129 3 5 214 3 206 6.71e-38 131
MS.gene058973.t1 AT1G22740 38.579 197 113 4 15 205 8 202 7.34e-38 130
MS.gene058973.t1 AT5G64990 37.563 197 122 1 17 213 9 204 1.54e-37 130
MS.gene058973.t1 AT3G16100 37.864 206 112 5 15 213 8 204 2.06e-37 129
MS.gene058973.t1 AT5G59150 47.934 121 62 1 57 177 3 122 2.49e-37 128
MS.gene058973.t1 AT2G21880 37.019 208 109 4 15 205 9 211 5.91e-37 129
MS.gene058973.t1 AT4G09720 38.500 200 110 4 15 201 8 207 2.28e-36 127
MS.gene058973.t1 AT4G09720 35.922 206 113 3 15 201 8 213 4.66e-35 124
MS.gene058973.t1 AT5G64990 36.275 204 122 2 17 213 9 211 1.07e-34 122
MS.gene058973.t1 AT5G39620 37.870 169 93 3 16 175 6 171 2.48e-33 119
MS.gene058973.t1 AT4G19640 39.669 121 73 0 17 137 12 132 2.34e-30 109
MS.gene058973.t1 AT4G19640 39.669 121 73 0 17 137 12 132 1.28e-29 109
MS.gene058973.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.68e-29 107
MS.gene058973.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.68e-29 107
MS.gene058973.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.68e-29 107
MS.gene058973.t1 AT2G21880 36.612 183 94 4 40 205 9 186 6.06e-29 107
MS.gene058973.t1 AT2G21880 36.612 183 94 4 40 205 9 186 6.06e-29 107
MS.gene058973.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.22e-27 103
MS.gene058973.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.22e-27 103
MS.gene058973.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.22e-27 103
MS.gene058973.t1 AT2G21880 33.173 208 109 5 15 205 9 203 4.14e-27 103
MS.gene058973.t1 AT2G44690 33.533 167 98 5 15 170 18 182 2.25e-26 101
MS.gene058973.t1 AT3G48040 33.533 167 98 5 15 170 8 172 5.24e-26 100
MS.gene058973.t1 AT5G62880 32.402 179 108 5 15 182 8 184 1.47e-25 99.4
MS.gene058973.t1 AT5G45970 31.737 167 101 5 15 170 6 170 1.85e-25 98.6
MS.gene058973.t1 AT3G51300 32.934 167 99 6 15 170 6 170 5.88e-25 97.4
MS.gene058973.t1 AT1G20090 34.731 167 96 6 15 170 5 169 6.04e-25 97.1
MS.gene058973.t1 AT1G75840 34.132 167 97 6 15 170 6 170 8.50e-25 97.1
MS.gene058973.t1 AT5G55190 28.972 214 140 6 3 209 2 210 1.41e-24 97.1
MS.gene058973.t1 AT5G55080 32.099 162 106 3 16 177 14 171 1.89e-24 96.7
MS.gene058973.t1 AT2G17800 33.533 167 98 6 15 170 6 170 2.85e-24 95.5
MS.gene058973.t1 AT2G17800 33.533 167 98 6 15 170 6 170 2.85e-24 95.5
MS.gene058973.t1 AT5G20010 28.037 214 144 6 3 212 2 209 3.17e-24 95.9
MS.gene058973.t1 AT4G28950 32.121 165 101 5 15 170 6 168 7.08e-24 94.7
MS.gene058973.t1 AT5G20020 28.866 194 129 5 3 192 2 190 1.06e-23 94.7
MS.gene058973.t1 AT3G48040 32.704 159 94 5 15 162 8 164 2.30e-23 92.8
MS.gene058973.t1 AT4G35950 32.934 167 99 6 15 170 6 170 2.50e-23 93.2
MS.gene058973.t1 AT5G62880 32.704 159 94 5 15 162 8 164 2.51e-22 90.1
MS.gene058973.t1 AT4G35020 37.069 116 70 3 15 129 6 119 3.02e-19 80.9
MS.gene058973.t1 AT4G35020 37.069 116 70 3 15 129 6 119 3.02e-19 80.9
MS.gene058973.t1 AT5G46025 34.314 102 65 2 77 177 6 106 2.79e-15 69.7
MS.gene058973.t1 AT3G51290 31.884 138 81 6 44 170 636 771 8.87e-14 70.1
MS.gene058973.t1 AT5G37680 28.049 164 99 5 16 170 20 173 3.08e-12 63.2
MS.gene058973.t1 AT3G49870 29.167 168 112 4 16 180 1 164 1.33e-11 61.2
MS.gene058973.t1 AT5G67560 31.707 164 93 6 16 170 20 173 1.35e-11 61.6
MS.gene058973.t1 AT2G15310 27.338 139 89 6 16 153 18 145 3.06e-11 60.8
MS.gene058973.t1 AT3G49870 29.167 168 112 4 16 180 20 183 4.46e-11 60.1

Find 48 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGAATCAAGTTGCAAATA+TGG 0.255433 1.2:-51362786 MS.gene058973:CDS
TTAGCATTGATTTCAAAATA+AGG 0.283837 1.2:-51362828 MS.gene058973:intron
GTTGGTTAATCTTGAGTGTC+TGG 0.301047 1.2:+51357939 None:intergenic
TAATCGGATCGAGCTCTTGC+AGG 0.360612 1.2:+51365076 None:intergenic
TCGCTTACCATCAAGCTCTA+TGG 0.377596 1.2:+51362804 None:intergenic
TTGGTTAATCTTGAGTGTCT+GGG 0.416091 1.2:+51357940 None:intergenic
CGGTTTCGAACCATTACAAC+TGG 0.420732 1.2:-51362745 MS.gene058973:intron
CTTGATTAGGTAATCGTAAT+CGG 0.424837 1.2:+51365060 None:intergenic
CATCTGAGAAACGTAATAGA+AGG 0.443048 1.2:+51362988 None:intergenic
CTTCTATTACGTTTCTCAGA+TGG 0.443228 1.2:-51362987 MS.gene058973:CDS
CGATGAGGAGAAGCTTGATT+AGG 0.449067 1.2:+51365047 None:intergenic
CCGACATGGATGAAAGCAAA+AGG 0.450345 1.2:-51358544 MS.gene058973:CDS
GCAGAGCCAACTCCCTGGTC+TGG 0.454797 1.2:+51357917 None:intergenic
AACTTCAAAGGGTCAAGCTC+TGG 0.455648 1.2:-51358408 MS.gene058973:CDS
GCGAATCAAGTTGCAAATAT+GGG 0.458264 1.2:-51362785 MS.gene058973:CDS
GCTTATTACCGTGGAGCAAT+GGG 0.460469 1.2:-51358917 MS.gene058973:CDS
CAATGTCAACAAAATATTAG+TGG 0.483464 1.2:-51358576 MS.gene058973:CDS
ATAAGGACCATAGAGCTTGA+TGG 0.484066 1.2:-51362811 MS.gene058973:CDS
AATGTCAACAAAATATTAGT+GGG 0.485156 1.2:-51358575 MS.gene058973:CDS
AGAGCTTGACCCTTTGAAGT+TGG 0.487525 1.2:+51358410 None:intergenic
AGCTTATTACCGTGGAGCAA+TGG 0.491934 1.2:-51358918 MS.gene058973:CDS
TTAGGCTGTTCCAACTTCAA+AGG 0.500392 1.2:-51358420 MS.gene058973:intron
CTGAAACTAACCAGTTGTAA+TGG 0.502216 1.2:+51362735 None:intergenic
TAGGCTGTTCCAACTTCAAA+GGG 0.502333 1.2:-51358419 MS.gene058973:CDS
AGCCAACTCCCTGGTCTGGT+TGG 0.504165 1.2:+51357921 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 1.2:-51357930 MS.gene058973:CDS
CAAGCTCTGGCAGATGAATA+CGG 0.517609 1.2:-51358395 MS.gene058973:CDS
CAAAATATTAGTGGGGAACA+AGG 0.518907 1.2:-51358567 MS.gene058973:CDS
CGACATGGATGAAAGCAAAA+GGG 0.563915 1.2:-51358543 MS.gene058973:intron
CTAATCAAGCTTCTCCTCAT+CGG 0.565419 1.2:-51365046 MS.gene058973:CDS
CTTGAGCAGAGCCAACTCCC+TGG 0.575603 1.2:+51357912 None:intergenic
AACCAACCAGACCAGGGAGT+TGG 0.575720 1.2:-51357923 MS.gene058973:CDS
TTGCAAATATGGGACACGGC+TGG 0.578666 1.2:-51362775 MS.gene058973:CDS
AACTAATATGAATGTAGATG+AGG 0.592652 1.2:-51358263 MS.gene058973:CDS
TCACAAACGTCTTCTTGCTG+TGG 0.593063 1.2:-51357887 MS.gene058973:CDS
TGGTTAATCTTGAGTGTCTG+GGG 0.601058 1.2:+51357941 None:intergenic
CTTCTCCTCATCGGTGATAG+CGG 0.601359 1.2:-51365037 MS.gene058973:intron
AGTGGGGAACAAGGCCGACA+TGG 0.603133 1.2:-51358558 MS.gene058973:CDS
CAAGTTGCAAATATGGGACA+CGG 0.605581 1.2:-51362779 MS.gene058973:CDS
TATTGGGCAGCTTATTACCG+TGG 0.608798 1.2:-51358926 MS.gene058973:intron
TCGGATCGAGCTCTTGCAGG+TGG 0.611640 1.2:+51365079 None:intergenic
GCAAAATACCCATTGCTCCA+CGG 0.620774 1.2:+51358909 None:intergenic
ACTGTTAAAAGATGACTCAT+CGG 0.623062 1.2:+51358871 None:intergenic
GGGACACGGCTGGTCAAGAG+CGG 0.673808 1.2:-51362765 MS.gene058973:CDS
AAGATTAACCAACCAGACCA+GGG 0.675765 1.2:-51357929 MS.gene058973:CDS
ATGTCAACAAAATATTAGTG+GGG 0.680013 1.2:-51358574 MS.gene058973:CDS
AGAAAGCGACTCAAAGACTG+AGG 0.689584 1.2:-51358200 MS.gene058973:intron
ACGAACCGCTATCACCGATG+AGG 0.719307 1.2:+51365032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.2 gene 51357880 51365110 51357880 ID=MS.gene058973
chr1.2 mRNA 51357880 51365110 51357880 ID=MS.gene058973.t1;Parent=MS.gene058973
chr1.2 exon 51365038 51365110 51365038 ID=MS.gene058973.t1.exon1;Parent=MS.gene058973.t1
chr1.2 CDS 51365038 51365110 51365038 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51362954 51363026 51362954 ID=MS.gene058973.t1.exon2;Parent=MS.gene058973.t1
chr1.2 CDS 51362954 51363026 51362954 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51362746 51362846 51362746 ID=MS.gene058973.t1.exon3;Parent=MS.gene058973.t1
chr1.2 CDS 51362746 51362846 51362746 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51358873 51358938 51358873 ID=MS.gene058973.t1.exon4;Parent=MS.gene058973.t1
chr1.2 CDS 51358873 51358938 51358873 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51358544 51358641 51358544 ID=MS.gene058973.t1.exon5;Parent=MS.gene058973.t1
chr1.2 CDS 51358544 51358641 51358544 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51358376 51358438 51358376 ID=MS.gene058973.t1.exon6;Parent=MS.gene058973.t1
chr1.2 CDS 51358376 51358438 51358376 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51358201 51358293 51358201 ID=MS.gene058973.t1.exon7;Parent=MS.gene058973.t1
chr1.2 CDS 51358201 51358293 51358201 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
chr1.2 exon 51357880 51357963 51357880 ID=MS.gene058973.t1.exon8;Parent=MS.gene058973.t1
chr1.2 CDS 51357880 51357963 51357880 ID=cds.MS.gene058973.t1;Parent=MS.gene058973.t1
Gene Sequence

>MS.gene058973

ATGGCTGCTCCACCTGCAAGAGCTCGATCCGATTACGATTACCTAATCAAGCTTCTCCTCATCGGTGATAGCGGTTCGTACTTTTTCAATTCTTTTTCTTTTCGCACTTTAGATTTTGATTCTGCTTAATATTTCATTAGGTTTTATTATTTTCAGCGGTAATTCGATTATTATTAGTGTAATCATACAAGTTTACTATAACAAATGGAGGTAGTAACTTATTTTTGTCAATGATAAAGTAAAAGGGTTACAACTAATTATTAAGGCTTAGCTCAACTGATCATGTGTAAGAAAATCAGTTATTTATTAATCAAATGTGACCTATTTGGATAAACAACTTAATTACACTTGTTTATGTTTGTATAAGCTATTTCTATAACAAAATATATAATAAAATTAAACGGCTTTCATATAAAATAAGGTGGTTTGGGGGTAAGGGACGTGAGAGTGGTCAACTTGAGTCTTTTGGCAAAATGGCGTTGGCGTATTCTACAACATGATTCTCCTTTGTGGAAAGAAGTCCTTGTCAAAAAGTTTGATCGGAGTGGAGTCACTTGGCCGAGAAGTGCTTCTGTATGGTGGAGAAATCTAACTTCATTGGAGGATTCGGTATTCGGGTGGAGGAGATTGGTTCAAAAGGGAAGTATTTAAGAAAGTTTGTGATCTTTTCCTGCGGTTGCTTGCTATTACAGATAGAAAGGATGCGAAGTTGAGTGAGGTTTGTGTTAGAAATGGGGAAGAGTGGAATTGGACGTGGTTGTGGAGAAGGTTGTTGTTTGTATGGGATGAGAGTTTACTTGAGCAATTATTGATGTTGTTGAATGATTTGGTACCAAATACCGAGAGAGATAGTTGGGGGTAGAGACTGGAAGGTGGAGGTGTGTTCTCAGTAAAATCAACTTATGACTTGTTGGAGGGGATTTTTGTGTTGGAAAATGATCTAGGTGAATTGGAAAAAATGGTTTTTGGAGGCCTTTGGAAAAGTCTGGCACCTTCAAAAGAGTGGCTTTCTCTTGGAAAATGCTCCTACATAGATTTCCAGCCCGGAATAATTTGTGGAAAAGGCATACTATTGCTCCCGAAGGTGTCTTTTGTGGGAATGATGAGGAATCTTCTATCCACCTTTTTCTTCATTGTTATTTTGCTGCTCAAGTGTGGGATAAGATTTTGAGATGGATAGGTGTGGAATTTATTATACCCCCAAACCATTTGTTCAAATTGAATGTTTGATAGGATGTGCTCAAAATAAAAAGTGGAAAAAAAGGGTTTTGGCTTATTTGGCACACTACCGTTTGGGTGATTTGGAGTACGAGAAATAGGAAGATTTTCAAGAATCGAGATTTTGAGGTTGATGCAATGGTGGAGGAAATCAAAGTCCTCTTATGGAAGCGGAGCTTGAGTAGATTGGAAGCATCACCATGCATGTTCTATGAATGAAATTGGTGTACGGGAGATTGCTTTGCTAGGTAGGAAGTTGGGATTGCTGTGCATGGTTCTTTTTCAGTGCTGTTTTGGGGTTGCTGGGCGGTGGTGTACGTGGCTGTCGATCGGTGTGTATTGGGGGTAACCAAATACTGGGTGGTTGTTTTGATGTGTTTTCCTCTTTTTTGGACGGGGTCAGGGGTGTGTTTTTTGTCCCTGTTTGTTGCGTTGTTCATGAGGTGCTCCTGCGGGTTCTCTGTTTTGTTTGTTGTTCCAGTATCAGTTTAGGGTACTGGATTGTGGCTTTGTTTAAGTTGTATCTGCTCTTTTTGCCCGGTCATCATGGCGACTTGTGATGGTACGGCGTGCGTAATAAAATTTGTTGCTTAAAAAAAACGGTTTGCATTTAAGCCGTACTAGGTTTTCATATAGCTATCCTGGGGAGCTTATGGAAATAAGTTGAAAACAAATTACGGGCATGCTAAAAGCTGTTTCCACAAGCTCTCACAAAAATCATCATAAGTGCGAATGTCTGCAAATAAGCTAATCCAAACATGCCTTTTTATCTCCTCTCTCTCCTTTTTATTATTAGTAGTGTATTGAATGTATCTTATCTTATTGGGTTTTGTTTGTATATTACATTCTTTTTTTCACGTTGGCAGGTGTGGGTAAAAGTTGCCTTCTATTACGTTTCTCAGATGGTTCATTCACAACTAGTTTTATCACAACCATCGGGTAGGTTCTCTTTGTGTGAACTTGCTTATTTTATGTTTTTCGTTGTTATTCTTGTCTTTCTTGAGGAGATGGCCCTGTACTTACTAGAATGGGTTATTTTTCTTTAGCATTGATTTCAAAATAAGGACCATAGAGCTTGATGGTAAGCGAATCAAGTTGCAAATATGGGACACGGCTGGTCAAGAGCGGTTTCGAACCATTACAACTGGTTAGTTTCAGTTACTGAATTTATTTGTTTTGTTCTCTTTCCTTCCCAACATAACTAGAATAATAAGTGAGAGCTTAATTGTGGTTCTTTATATTCAACTTATGTACACTTCTTATGCAACATGTGCTTGTCATGATATTAATCAGTTGCTACTTATTTATTGCTCCTTCTATTCTTGCACATTGGATAGGAACCACTATAAATATTAAATAGTATATTTTGATATTATTTGTTGATTGAGGCAAATAGATTTCCCTTTCTTCTCTAACTTGCTAAACCATTTTTTATTGAAAACCATCCTGTTTTGAATAAGATTTAAACTTCCATTTGCCAGATCAATGTATAAGGTACCTGATATGATTGGTGGCCTATTAATAGATCTTTTAAGATTGCTGACTGTTTGAGACGATATGCTTTTTTACTAGATTGTATGGGCTGGATCTCTTTATTAGATTGGTTTAGACTTTTATCTAAAAATTCTGAATATTATCAGACCTGTGAAGTAGTTGGATATCCGGTGTTGTACCCACTAATTATCACCTTACACGTGATTGAGGTTTAGTTCTACTGTATGAAGCTCGGATACTTGATACAACATGAACACAATATGACACATATATGGAAATTCTTGAAAACTGAAGATATTAGATGGCCTAAATTCATTTACACTAATTTGTGAAAAATTTACTTACTTTATTATTTTACAGAAATGCAATAATATTTGTAAAAAAACATTGATGTTTTTTTTATCAATATATAACTATGTTTATTTGCATATGATGATCACAAGTTCACAACTCACAAAAATACTTGTTTTTTTGAAACAACCAATGTTAGTATTGTTAGTTTTTTGTTGGGAGTGGGGATCGAATTCTCCATCTCCTTATCACTCGACTCCTTACAAAAGACACTTCTAATCATTGCAAAAAACCATAGAGGCATATTTTTACTCTTACCCATATCAATTATTTATTATTTTCCTTGTGACGTGTCATAAATGTATTATTTTTCCCTAACCACTGTCAAAATGTCACAAAGTACCACTGCTCCTATTTAAACTAAGTCTAGACCTATGAAGCATAGACTTTGACATACGGACACGACACACATTGAGACACGAGTAGTGTCCAAAATATAGGACACCGGGACACCTCATACTTGTGTATATTTTTATTTATGTGTATGCGTGTGTATATAATTGACTTAGCAAAATTCTAAATTAAGAATTTAGATTCATATGTTAACCTTCTAAAGATAAATTCATGTTAATGATATGACTCACCAAAAAGAATACTAATACTGTATTAGGAATATGCCTTATGCTGTTATAATTGCGTCAGAGGATCAATCCTCTTCTCTTCCTCCAGAATTCTGTTAGGACAGCTGTCCTAACCTAGGACAACTGACACTTGTGTTAGAGTTAGTTAGGATCTAGCTACTCTATAAATACTTGATCGTATCTCCTTTCAAAACTATCTAGAACTTTCCCTCTCTTTCTCTCATTTCTCTGAATCCTCTACTTCTAACACGGTATCTTAGAGCTTCTTTTCAATCTTTAGCCATGGCTATTGGCCACTCCTCCTACCTCTTCTCATGTCACTGATCGAGTTACTGCGGCAGCAGCACCAACAACATTCAAGCAAAAGATCTATCTTAAACTTGATGATAAACACTAGGCTAAAGTGCAACTTTGGCCCCCTATCTTTCAAAAAGTTGCGATTTTGGCCCCCTAAGTTTGAAAACTACAATTTTGGTCCCCTATGTTTTAGCCCCTTTGCATATTTGGTCCTTTTGACCAAGTCAACGCACCACGTGTGTAATTAATTAATTAAAAAAATAAAAAATCGAAAAAATCAGTTTTTAAATTAAATAAATGAAAAAAATAATAAAAAAATATTAAAAAATTCTGGAAAAATGAAAAATAATGAAAAAATAATTTTTTTTTCCAGATTTTAAATTAAATAAATCAAAAAAAATCCAGAAAATCAATTTTTAAATTAAATAAATGAAAAAATAATAATAAAAAATTTAAAAATAATGAAAAAATTCGAAAAAAAATTTCAAATTTTCCAGATTTTTTAAAAAATTCGAAAAAAATACGGAATTTTTTTTAAAAAATCTGGAAAATTTGACATTATTTTTTTCGAATTTTTTTCAGAATTTTTTTCGAAATTTTTTCCATAATCTTTTACAAAATTTTCTAATGTTGAAAATTTGACATTCTAAAGGCGCAAGAAAACGAAAAAAGTATACACAAAAACACCGACGAGAATACAACTTGGCCACAAATTTGGTACATATTTCTTCTTTAGGGAAATGAATGTTTCCATGACATTACTTTTTCGAATAAGTGATTCTTGGAATTGTCCATGAATTTTTGTGAATTTTTTTTCGTTTTTTTAATCATTTTTATTAATATTTTTATTTTTCAAGAATTTATTTCATTTTTTTGTTTTTTAAATTTTTTTATTTTTTAATTATTTTTCATTTTTCCAGAATTTTTTAATATTTTTTCATTTTTCCAGAATTTTTTAATTTTTTTTATTATTTTTCATTTTTCCAGAATTTTTTAATTTTTTTGTTCATTTATTTAATTTAAAAATTGATTTTTTCGATTTTTTATTTTTTTAATTAATTAATTACACACGTGGCATGCCACGTATGCGTTGACTTGGTCAAAATTGCCCAAAAGGACCAAATATGCTAAGGGGCTAAAACATAGGGGACCAAAATTGTAGTTTTCAAATTTAAGGGGCCAAAATCACAACTTTTTGAAAGATAGTGGGCCAAAGTTGCACTTTAGCCTAAAAACTATCTTCAATGAAAGCAACTAGTTAAAGGCGTTCGTTGAGGAAGTAACTTGGTGAAATACGCTGTTCTACAAAAATTTTTGAGTATTGATCCTCTGATACAATTATAACAGCATAAAGTATATTCCTAATAAACAAGACCAAGGGGAATCATTTATAAGGCAATCCTTATCTATATGACATAAGATAAGAATATAAATCATGTCTATTATAACAATTTAATCCTATGATGATGATCCTCACAAAAAATGATAAGACATCATTGTTTTAGTTCTCATAAAAAGGAAAAGATCTAATCTAGAATTAGAAGTTGTCTGAGACAAGTGTTTGGCCAAGAGCATGCGTCGGCACAGTCTTTGCTCGCGTGTTCAAGGCTTGTCTAATAGGTGTCTGTACCAGTTTTATTTATTTAATTGGACTATATTAAAAGGTGTCTGACATGTGTCCAAGGGATCTTCATCTTCCCATTATCATCATCCAAAACAGCATAGCTTCTGAATTTAATTTGCCAATTCAAGAAGTTGGTAACCTTCGTCATCAAATGAATCACACACATCACTACTAATATCCCACAAATATCCCTCTCCCTCTTTCCATATCATCAAACATGAATAAAGTATCTACTCCAGTTATGCTCATAATTTGAGGGAGAACAAGGCTCAAGTTACTGGAGCTGTATGCCAAAGTGTTGAAGAGGCATCCCTTATTTATCTGTCAAATATTATCTTTTAAAATCTTAAAAAGGTGGAGGGTACTTTTTGGATACTGATCTAGGAGTATTATATGCATACGGGAATACGGCTATGACACCTATACTTTAGCAATTTTAGAGTATTATAGCGTTATAGGTTCTACTCTATATACTAATGTGATTATGTATTGCAAGATGTTGCTTGTTTGTCAATATCAGTGCATATTGTGATATTGATTGACAGCCGTCACTATTTCAAACACATATTTCTACTCTGATGATGTGTTCAATCTTTTTATTGGGCAGCTTATTACCGTGGAGCAATGGGTATTTTGCTTGTGTATGATGTCACCGATGAGTCATCTTTTAACAGTAAGTTCTTTTTCCACCTTCTGGTTTTAGTTTTGCGCCATTCCTCCTTTATTATTTCCTCCACATTCTAATCTTCTAATATGCTTGTTTCTTTAAATCCACACGAATCATTGGAACAAGTGTTTTTGTCGGCAAACTCTACTTTTCAACTGTGTACTTTGGGGAGATCCCAGTGCTTAAATTTGTATCAAGATGGAACTGACTTCTATATTTGTTTCATCTCATATCCAGACATCAAAAATTGGATTCGCAACATTGAGCAGCATGCTTCTGACAATGTCAACAAAATATTAGTGGGGAACAAGGCCGACATGGATGAAAGCAAAAGGGTTTGCCTCACACACTTACTCTTTGTCCATCCTTTTGGTTTTCCATGTACACGTATATCCTGTGATTACTATGCTACACTTGATACTGGAAATTATTCTCCTTAGGCTGTTCCAACTTCAAAGGGTCAAGCTCTGGCAGATGAATACGGCATCAAATTTTTCGAAACTGTAAGCAGCACTTATTACTCTTGTTGGAAAAGCATTCCAAAACCGCTGTGCTGTTTCTAATTCCGAGATTATGTTTATGCAGAGTGCAAAAACTAATATGAATGTAGATGAGGTTTTCTTTTCAATAGCTCGGGACATCAAACAAAGACTTGCAGAAAGCGACTCAAAGACTGAGGTTTTTATTTCGACCTTTCTTTTGTTATATGATGGATTCATTATCTTGGAAGTTGCAACAGTTTATAATTGCATTATTTTTTGATTTATTTGAAGTTAATGCACGACGCTTCCTTGATATTGCTGGTTTTCTTTTTTAGACAACTGTTATGTTGCATGTTTGGTTGAATAAGAAAATCTATATCAGATTTAATTGCTTCATCATCTTCACGCTAAATTTTCATTTGGTTCTTTGCAGCCCCAGACACTCAAGATTAACCAACCAGACCAGGGAGTTGGCTCTGCTCAAGCATCACAAACGTCTTCTTGCTGTGGTTCTTAG

Protein sequence

>MS.gene058973.t1

MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQRLAESDSKTEPQTLKINQPDQGVGSAQASQTSSCCGS