AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025879


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025879.t1 MTR_7g117910 83.333 228 22 2 1 228 1 212 3.05e-135 379
MS.gene025879.t1 MTR_8g027220 82.791 215 35 1 14 228 20 232 1.35e-131 370
MS.gene025879.t1 MTR_8g089985 65.877 211 69 2 15 223 12 221 3.83e-97 283
MS.gene025879.t1 MTR_3g086980 66.184 207 67 2 15 219 11 216 2.40e-96 280
MS.gene025879.t1 MTR_0262s0050 67.526 194 61 1 16 207 11 204 3.10e-91 268
MS.gene025879.t1 MTR_1g052475 64.796 196 66 1 15 207 10 205 7.52e-91 266
MS.gene025879.t1 MTR_2g005510 59.813 214 83 1 14 227 9 219 7.90e-89 261
MS.gene025879.t1 MTR_2g075950 54.167 216 95 1 12 227 5 216 4.23e-83 247
MS.gene025879.t1 MTR_2g014990 54.795 219 95 2 10 228 3 217 1.45e-82 245
MS.gene025879.t1 MTR_4g064897 56.863 204 88 0 10 213 2 205 2.35e-82 244
MS.gene025879.t1 MTR_4g088090 54.338 219 96 2 10 228 3 217 3.84e-82 244
MS.gene025879.t1 MTR_4g079350 54.338 219 96 2 10 228 3 217 7.99e-82 243
MS.gene025879.t1 MTR_3g069510 57.000 200 86 0 10 209 2 201 2.80e-81 242
MS.gene025879.t1 MTR_2g090865 55.399 213 90 3 15 227 6 213 1.20e-78 235
MS.gene025879.t1 MTR_2g083860 59.116 181 74 0 12 192 5 185 1.30e-78 235
MS.gene025879.t1 MTR_8g036220 50.885 226 106 2 5 226 1 225 1.92e-77 233
MS.gene025879.t1 MTR_1g078200 60.000 175 70 0 18 192 12 186 6.68e-75 226
MS.gene025879.t1 MTR_7g405790 51.923 208 97 1 19 226 14 218 5.20e-73 221
MS.gene025879.t1 MTR_7g051940 51.905 210 94 2 19 228 12 214 7.61e-71 216
MS.gene025879.t1 MTR_6g079550 48.649 222 102 2 10 227 2 215 2.72e-70 214
MS.gene025879.t1 MTR_8g107070 52.604 192 91 0 15 206 9 200 6.95e-65 202
MS.gene025879.t1 MTR_8g031870 52.761 163 77 0 19 181 5 167 5.45e-59 184
MS.gene025879.t1 MTR_8g031660 52.096 167 80 0 19 185 5 171 5.82e-58 182
MS.gene025879.t1 MTR_2g027660 48.066 181 94 0 19 199 5 185 6.25e-58 182
MS.gene025879.t1 MTR_8g031680 50.588 170 84 0 19 188 5 174 1.60e-56 179
MS.gene025879.t1 MTR_6g021790 50.610 164 81 0 18 181 4 167 5.04e-56 177
MS.gene025879.t1 MTR_2g005500 45.263 190 103 1 18 207 7 195 7.83e-55 174
MS.gene025879.t1 MTR_8g031830 50.299 167 82 1 19 184 5 171 5.30e-54 172
MS.gene025879.t1 MTR_7g081700 43.077 195 109 1 18 212 6 198 9.25e-53 169
MS.gene025879.t1 MTR_8g006970 43.878 196 107 2 18 212 20 213 9.52e-53 169
MS.gene025879.t1 MTR_1g068730 40.887 203 114 2 12 213 7 204 3.38e-51 166
MS.gene025879.t1 MTR_8g006970 48.171 164 85 0 18 181 6 169 7.04e-51 164
MS.gene025879.t1 MTR_1g068740 40.887 203 114 2 12 213 7 204 7.08e-51 165
MS.gene025879.t1 MTR_7g100020 41.146 192 107 2 18 208 13 199 7.55e-49 159
MS.gene025879.t1 MTR_1g115325 43.713 167 93 1 18 183 13 179 2.84e-48 158
MS.gene025879.t1 MTR_3g064390 42.945 163 93 0 22 184 12 174 6.37e-47 154
MS.gene025879.t1 MTR_8g093740 42.188 192 105 4 8 197 1 188 5.97e-46 152
MS.gene025879.t1 MTR_5g076590 41.975 162 94 0 22 183 12 173 6.61e-46 151
MS.gene025879.t1 MTR_1g094220 42.941 170 92 2 22 190 33 198 1.07e-45 151
MS.gene025879.t1 MTR_2g102060 39.326 178 107 1 12 189 3 179 4.64e-45 149
MS.gene025879.t1 MTR_2g096550 37.688 199 118 4 14 206 9 207 2.88e-44 147
MS.gene025879.t1 MTR_8g103550 40.120 167 100 0 22 188 11 177 3.07e-44 147
MS.gene025879.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 3.39e-44 147
MS.gene025879.t1 MTR_1g029450 41.026 195 112 3 16 208 13 206 3.47e-44 147
MS.gene025879.t1 MTR_3g096350 41.969 193 105 5 8 198 1 188 4.53e-44 147
MS.gene025879.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 6.96e-44 146
MS.gene025879.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 1.17e-43 147
MS.gene025879.t1 MTR_4g099470 43.558 163 88 2 51 212 15 174 1.38e-43 145
MS.gene025879.t1 MTR_4g063160 42.012 169 95 2 18 183 13 181 3.30e-43 145
MS.gene025879.t1 MTR_7g103070 45.062 162 87 2 18 177 14 175 3.47e-43 145
MS.gene025879.t1 MTR_1g062760 44.444 171 92 3 18 186 12 181 2.04e-42 143
MS.gene025879.t1 MTR_1g068730 44.444 135 75 0 9 143 4 138 7.71e-42 140
MS.gene025879.t1 MTR_1g068740 44.604 139 76 1 9 146 4 142 1.19e-41 140
MS.gene025879.t1 MTR_5g013900 40.127 157 94 0 21 177 10 166 1.65e-41 140
MS.gene025879.t1 MTR_4g098950 38.854 157 96 0 21 177 10 166 1.21e-40 138
MS.gene025879.t1 MTR_3g087160 38.217 157 97 0 21 177 10 166 1.90e-40 137
MS.gene025879.t1 MTR_8g090215 38.217 157 97 0 21 177 10 166 6.67e-40 136
MS.gene025879.t1 MTR_1g090717 44.253 174 94 3 18 188 13 186 3.69e-39 134
MS.gene025879.t1 MTR_3g096350 44.366 142 73 5 8 145 1 140 1.23e-35 124
MS.gene025879.t1 MTR_3g096350 47.368 133 66 4 8 138 1 131 1.70e-35 123
MS.gene025879.t1 MTR_3g064390 42.969 128 73 0 22 149 12 139 1.35e-34 121
MS.gene025879.t1 MTR_8g093740 43.243 148 79 3 51 196 10 154 1.76e-33 119
MS.gene025879.t1 MTR_8g092020 38.650 163 93 3 20 175 12 174 7.26e-33 118
MS.gene025879.t1 MTR_1g097420 38.037 163 94 3 20 175 8 170 5.32e-32 116
MS.gene025879.t1 MTR_4g069850 38.889 162 92 3 20 174 8 169 2.75e-31 114
MS.gene025879.t1 MTR_2g101890 37.654 162 94 3 20 174 10 171 2.28e-30 112
MS.gene025879.t1 MTR_7g103070 45.763 118 62 2 62 177 2 119 3.39e-30 110
MS.gene025879.t1 MTR_4g012940 37.654 162 94 3 20 174 8 169 5.66e-30 110
MS.gene025879.t1 MTR_6g039490 36.196 163 97 3 20 175 8 170 1.10e-27 105
MS.gene025879.t1 MTR_2g005500 33.158 190 86 2 18 207 7 155 2.46e-26 100
MS.gene025879.t1 MTR_1g097420 35.152 165 98 4 18 175 35 197 3.15e-26 102
MS.gene025879.t1 MTR_3g107717 33.728 169 108 3 14 181 6 171 3.65e-23 93.6
MS.gene025879.t1 MTR_3g107713 33.728 169 108 3 14 181 6 171 3.77e-23 93.6
MS.gene025879.t1 MTR_3g107707 33.728 169 108 3 14 181 6 171 4.10e-23 93.6
MS.gene025879.t1 MTR_8g031810 43.269 104 45 1 19 122 5 94 6.28e-23 89.4
MS.gene025879.t1 MTR_1g069245 47.368 95 46 2 33 127 109 199 4.93e-21 87.8
MS.gene025879.t1 MTR_5g022600 33.939 165 95 5 22 174 8 170 6.03e-21 87.0
MS.gene025879.t1 MTR_8g075240 33.939 165 95 5 22 174 8 170 6.04e-20 84.3
MS.gene025879.t1 MTR_4g088055 37.190 121 73 3 22 141 8 126 6.56e-20 84.3
MS.gene025879.t1 MTR_2g090875 32.121 165 98 5 22 174 8 170 1.34e-19 83.6
MS.gene025879.t1 MTR_4g073250 37.815 119 71 3 22 139 8 124 3.56e-19 82.4
MS.gene025879.t1 MTR_6g087980 38.017 121 72 3 22 141 8 126 5.64e-19 82.0
MS.gene025879.t1 MTR_2g078000 63.265 49 18 0 81 129 46 94 2.72e-18 77.4
MS.gene025879.t1 MTR_3g078260 32.727 165 97 5 22 174 10 172 7.13e-18 79.3
MS.gene025879.t1 MTR_1452s0010 42.683 82 47 0 50 131 11 92 5.00e-17 74.3
MS.gene025879.t1 MTR_3g078260 35.965 114 70 3 22 134 10 121 3.83e-16 73.2
MS.gene025879.t1 MTR_4g113620 31.579 171 103 6 13 181 4 162 6.52e-16 73.9
MS.gene025879.t1 MTR_1g059590 32.335 167 106 3 23 189 398 557 1.39e-15 75.5
MS.gene025879.t1 MTR_1g059590 32.335 167 106 3 23 189 431 590 1.42e-15 75.5
MS.gene025879.t1 MTR_1686s0010 36.905 84 53 0 48 131 9 92 4.34e-14 66.2
MS.gene025879.t1 MTR_8g099250 51.724 58 28 0 5 62 1 58 1.59e-13 63.9
MS.gene025879.t1 MTR_3g053480 49.180 61 31 0 5 65 1 61 1.86e-13 63.5
MS.gene025879.t1 MTR_2g078560 58.696 46 19 0 82 127 54 99 2.01e-13 68.6
MS.gene025879.t1 MTR_5g092060 29.814 161 103 3 21 174 105 262 9.73e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025879.t1 AT1G01200 69.456 239 60 5 1 228 1 237 3.06e-115 329
MS.gene025879.t1 AT5G65270 66.197 213 70 1 13 223 10 222 6.89e-102 295
MS.gene025879.t1 AT4G39990 66.832 202 66 1 16 217 13 213 2.72e-96 280
MS.gene025879.t1 AT3G12160 65.842 202 67 1 15 214 10 211 1.14e-94 276
MS.gene025879.t1 AT5G47960 64.186 215 70 3 15 226 10 220 1.53e-93 273
MS.gene025879.t1 AT1G09630 57.798 218 88 1 10 227 2 215 1.49e-90 266
MS.gene025879.t1 AT4G18800 55.093 216 90 2 12 227 5 213 2.79e-83 247
MS.gene025879.t1 AT5G45750 58.081 198 82 1 12 209 5 201 2.84e-82 244
MS.gene025879.t1 AT1G07410 58.000 200 83 1 10 209 2 200 6.02e-82 244
MS.gene025879.t1 AT5G60860 54.128 218 96 2 10 227 3 216 2.00e-81 243
MS.gene025879.t1 AT5G59150 63.687 179 65 0 10 188 2 180 3.50e-81 242
MS.gene025879.t1 AT3G15060 53.211 218 98 2 10 227 3 216 1.40e-80 240
MS.gene025879.t1 AT1G16920 52.778 216 97 2 12 227 5 215 2.24e-80 240
MS.gene025879.t1 AT4G18430 53.211 218 98 2 10 227 3 216 3.95e-80 239
MS.gene025879.t1 AT3G46830 63.483 178 65 0 11 188 3 180 8.22e-80 238
MS.gene025879.t1 AT3G46830 63.483 178 65 0 11 188 3 180 8.22e-80 238
MS.gene025879.t1 AT1G28550 52.752 218 100 2 10 227 3 217 2.06e-79 237
MS.gene025879.t1 AT1G06400 56.566 198 85 1 12 209 5 201 2.98e-79 237
MS.gene025879.t1 AT2G33870 50.926 216 103 2 12 227 5 217 2.51e-77 232
MS.gene025879.t1 AT5G47520 53.774 212 93 2 18 227 12 220 2.20e-75 227
MS.gene025879.t1 AT3G07410 51.364 220 100 3 7 226 2 214 2.74e-72 219
MS.gene025879.t1 AT1G05810 57.955 176 74 0 18 193 10 185 4.23e-72 219
MS.gene025879.t1 AT1G05810 57.955 176 74 0 18 193 56 231 8.22e-72 220
MS.gene025879.t1 AT2G43130 55.978 184 78 1 11 194 6 186 1.18e-71 218
MS.gene025879.t1 AT1G73640 55.319 188 83 1 14 201 7 193 2.98e-71 217
MS.gene025879.t1 AT2G31680 56.250 176 77 0 18 193 10 185 1.22e-70 215
MS.gene025879.t1 AT1G18200 48.529 204 98 1 11 207 4 207 4.66e-67 206
MS.gene025879.t1 AT4G17170 48.066 181 94 0 19 199 5 185 3.09e-58 183
MS.gene025879.t1 AT4G35860 49.724 181 87 1 18 194 4 184 3.88e-58 183
MS.gene025879.t1 AT4G17160 50.898 167 82 0 19 185 5 171 6.43e-56 177
MS.gene025879.t1 AT3G11730 44.737 190 105 0 18 207 6 195 8.82e-55 174
MS.gene025879.t1 AT4G17530 43.590 195 108 1 18 212 6 198 1.51e-52 169
MS.gene025879.t1 AT5G47200 43.077 195 109 1 18 212 6 198 2.75e-52 168
MS.gene025879.t1 AT5G59150 62.205 127 48 0 62 188 3 129 2.77e-52 167
MS.gene025879.t1 AT1G02130 42.105 190 109 1 18 207 6 194 3.71e-52 167
MS.gene025879.t1 AT3G46060 41.624 197 109 2 18 213 13 204 4.34e-50 162
MS.gene025879.t1 AT3G46060 41.624 197 109 2 18 213 13 204 4.34e-50 162
MS.gene025879.t1 AT3G46060 41.624 197 109 2 18 213 13 204 4.34e-50 162
MS.gene025879.t1 AT5G59840 41.117 197 110 2 18 213 13 204 8.49e-50 162
MS.gene025879.t1 AT3G53610 43.713 167 93 1 18 183 13 179 4.10e-48 157
MS.gene025879.t1 AT3G53610 43.713 167 93 1 18 183 13 179 4.10e-48 157
MS.gene025879.t1 AT3G53610 43.713 167 93 1 18 183 13 179 4.10e-48 157
MS.gene025879.t1 AT3G09900 42.135 178 102 1 7 183 2 179 1.34e-47 156
MS.gene025879.t1 AT3G54840 42.541 181 99 2 13 192 26 202 1.66e-47 155
MS.gene025879.t1 AT4G19640 41.104 163 96 0 22 184 12 174 9.86e-47 154
MS.gene025879.t1 AT3G54840 43.860 171 91 2 23 192 2 168 1.18e-46 152
MS.gene025879.t1 AT5G03520 41.573 178 103 1 7 183 2 179 3.90e-46 152
MS.gene025879.t1 AT3G54840 44.172 163 90 1 13 174 26 188 4.39e-46 152
MS.gene025879.t1 AT5G45130 40.491 163 97 0 22 184 12 174 2.33e-45 150
MS.gene025879.t1 AT5G45130 40.373 161 96 0 24 184 22 182 6.00e-44 147
MS.gene025879.t1 AT4G35860 51.095 137 63 1 62 194 2 138 7.45e-44 145
MS.gene025879.t1 AT1G43890 42.021 188 106 3 14 199 7 193 7.91e-44 146
MS.gene025879.t1 AT1G43890 42.021 188 106 3 14 199 7 193 7.91e-44 146
MS.gene025879.t1 AT1G43890 42.021 188 106 3 14 199 7 193 7.91e-44 146
MS.gene025879.t1 AT5G10260 40.127 157 94 0 21 177 10 166 2.53e-42 142
MS.gene025879.t1 AT2G44610 35.789 190 112 2 21 200 10 199 8.05e-41 139
MS.gene025879.t1 AT5G03530 42.857 175 97 3 14 186 7 180 6.53e-40 136
MS.gene025879.t1 AT5G03530 42.857 175 97 3 14 186 7 180 6.53e-40 136
MS.gene025879.t1 AT2G22290 38.217 157 97 0 21 177 10 166 3.13e-39 134
MS.gene025879.t1 AT4G39890 37.975 158 97 1 21 177 10 167 2.99e-38 132
MS.gene025879.t1 AT3G09910 42.857 175 97 3 14 186 7 180 1.14e-37 130
MS.gene025879.t1 AT3G09910 42.857 175 97 3 14 186 7 180 1.14e-37 130
MS.gene025879.t1 AT3G09910 42.857 175 97 3 14 186 7 180 1.14e-37 130
MS.gene025879.t1 AT3G09910 42.442 172 96 3 14 183 7 177 3.46e-37 129
MS.gene025879.t1 AT3G09910 42.442 172 96 3 14 183 7 177 3.46e-37 129
MS.gene025879.t1 AT5G64990 37.580 157 98 0 21 177 8 164 5.57e-37 129
MS.gene025879.t1 AT4G19640 41.600 125 73 0 22 146 12 136 2.54e-35 123
MS.gene025879.t1 AT4G19640 40.458 131 78 0 22 152 12 142 9.91e-35 122
MS.gene025879.t1 AT5G03520 42.308 130 74 1 55 183 40 169 1.33e-34 122
MS.gene025879.t1 AT5G64990 35.976 164 98 1 21 177 8 171 2.80e-34 122
MS.gene025879.t1 AT1G52280 39.877 163 89 4 20 174 8 169 6.73e-32 115
MS.gene025879.t1 AT3G18820 39.506 162 91 3 20 174 8 169 6.80e-32 115
MS.gene025879.t1 AT4G09720 38.182 165 95 3 20 177 8 172 1.11e-31 115
MS.gene025879.t1 AT1G22740 36.810 163 96 3 20 175 8 170 1.48e-31 115
MS.gene025879.t1 AT2G21880 36.970 165 97 3 20 177 9 173 2.68e-31 114
MS.gene025879.t1 AT4G09720 37.059 170 95 3 20 177 8 177 4.85e-31 114
MS.gene025879.t1 AT1G49300 38.037 163 94 3 20 175 8 170 3.29e-30 111
MS.gene025879.t1 AT1G49300 38.037 163 94 3 20 175 8 170 3.29e-30 111
MS.gene025879.t1 AT4G09720 35.795 176 95 3 20 177 8 183 5.29e-30 111
MS.gene025879.t1 AT3G16100 38.650 163 91 4 20 174 8 169 8.86e-30 110
MS.gene025879.t1 AT5G39620 35.366 164 99 3 21 177 6 169 1.79e-26 101
MS.gene025879.t1 AT5G55080 32.544 169 110 3 14 181 6 171 7.02e-25 98.2
MS.gene025879.t1 AT5G20020 33.728 169 108 3 14 181 6 171 5.07e-23 93.2
MS.gene025879.t1 AT5G55190 33.728 169 108 3 14 181 6 171 5.24e-23 93.2
MS.gene025879.t1 AT5G20010 33.728 169 108 3 14 181 6 171 5.35e-23 93.2
MS.gene025879.t1 AT2G21880 34.459 148 90 3 37 177 1 148 6.26e-23 92.0
MS.gene025879.t1 AT2G21880 34.459 148 90 3 37 177 1 148 6.26e-23 92.0
MS.gene025879.t1 AT5G46025 46.729 107 55 2 82 186 6 112 6.27e-23 90.1
MS.gene025879.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.01e-22 90.5
MS.gene025879.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.01e-22 90.5
MS.gene025879.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.01e-22 90.5
MS.gene025879.t1 AT2G21880 32.121 165 97 4 20 177 9 165 1.29e-21 89.0
MS.gene025879.t1 AT2G44690 34.545 165 94 5 22 174 20 182 1.90e-21 88.6
MS.gene025879.t1 AT1G75840 33.939 165 95 5 22 174 8 170 7.63e-21 86.7
MS.gene025879.t1 AT1G20090 33.333 165 96 5 22 174 7 169 1.92e-20 85.9
MS.gene025879.t1 AT4G35020 33.333 165 96 5 22 174 8 170 4.12e-20 85.1
MS.gene025879.t1 AT4G35020 33.333 165 96 5 22 174 8 170 4.12e-20 85.1
MS.gene025879.t1 AT4G35020 33.333 165 96 5 22 174 8 170 4.12e-20 85.1
MS.gene025879.t1 AT3G51300 33.333 165 96 5 22 174 8 170 1.18e-19 83.6
MS.gene025879.t1 AT4G35950 33.939 165 95 5 22 174 8 170 1.44e-19 83.6
MS.gene025879.t1 AT2G17800 33.333 165 96 5 22 174 8 170 2.17e-19 83.2
MS.gene025879.t1 AT2G17800 33.333 165 96 5 22 174 8 170 2.17e-19 83.2
MS.gene025879.t1 AT4G28950 29.442 197 122 6 21 202 7 201 7.51e-19 82.0
MS.gene025879.t1 AT3G48040 30.049 203 124 6 22 212 10 206 7.43e-18 79.3
MS.gene025879.t1 AT5G45970 35.537 121 75 3 22 141 8 126 9.14e-18 79.0
MS.gene025879.t1 AT5G62880 30.387 181 98 5 22 183 10 181 1.49e-17 78.6
MS.gene025879.t1 AT3G48040 37.190 121 73 3 22 141 10 128 2.16e-17 77.4
MS.gene025879.t1 AT4G35020 35.965 114 70 3 22 134 8 119 5.10e-17 75.5
MS.gene025879.t1 AT4G35020 35.965 114 70 3 22 134 8 119 5.10e-17 75.5
MS.gene025879.t1 AT5G62880 34.000 150 87 5 22 170 10 148 5.43e-17 76.6
MS.gene025879.t1 AT4G07524 66.667 33 11 0 44 76 2 34 4.84e-11 57.4

Find 45 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGATTATGTGTTTA+AGG 0.114114 7.1:-596575 MS.gene025879:CDS
AACAATGTTGCTACACTTAA+AGG 0.136675 7.1:-595118 MS.gene025879:CDS
ACTAGAACTGTCACAATTAA+TGG 0.238881 7.1:-596445 MS.gene025879:CDS
CTTCCGTGTGCACCACTCTT+TGG 0.290440 7.1:+595290 None:intergenic
ATTAGATTCTAACGACCTTT+TGG 0.294249 7.1:+595150 None:intergenic
ATTGCTTGAAGAGATTAATA+AGG 0.303173 7.1:-595179 MS.gene025879:CDS
TCCATCGTCATCATGCTAAT+TGG 0.315923 7.1:-595334 MS.gene025879:CDS
GCATACTACAGAGGAGCATT+AGG 0.316511 7.1:-595445 MS.gene025879:CDS
GGAAGAAAAGAAACCTTTCT+TGG 0.341516 7.1:+596386 None:intergenic
AACTCATCAAAGCTCAGATC+TGG 0.360411 7.1:-596420 MS.gene025879:CDS
CGTTTGATCATGTAGCTAGA+TGG 0.371088 7.1:-595387 MS.gene025879:CDS
TGTGGAGTTTGCAGAGGATC+AGG 0.380249 7.1:-595263 MS.gene025879:CDS
CATACTACAGAGGAGCATTA+GGG 0.398256 7.1:-595444 MS.gene025879:CDS
GTGTTTAAGGTTGTTGTGAT+TGG 0.414253 7.1:-596562 MS.gene025879:CDS
TTGATCGAAGAAAATGAATC+AGG 0.424173 7.1:-596632 None:intergenic
CATGATGACGATGGAGTTGT+CGG 0.445142 7.1:+595342 None:intergenic
ACAATGTTGCTACACTTAAA+GGG 0.474727 7.1:-595117 MS.gene025879:CDS
TTTGACTCAAAATCAACCAT+TGG 0.498039 7.1:-596481 MS.gene025879:CDS
TTAATAAGGTTGTCTCCAAA+AGG 0.501126 7.1:-595165 MS.gene025879:CDS
GGGATACTGCTGGCCAAGAA+AGG 0.510670 7.1:-596399 MS.gene025879:intron
AGGAGCATTAGGGGCCATGC+TGG 0.520247 7.1:-595434 MS.gene025879:CDS
AGTCTGAAATTCAACTCCAA+TGG 0.545485 7.1:+596465 None:intergenic
GTGGAGTTTGCAGAGGATCA+GGG 0.547643 7.1:-595262 MS.gene025879:CDS
ACTCATCAAAGCTCAGATCT+GGG 0.560858 7.1:-596419 MS.gene025879:CDS
GAAAGACTCAAATGCTGTCA+AGG 0.561718 7.1:-596525 MS.gene025879:CDS
TCTGAGACTTCAGCGTTCAG+TGG 0.562534 7.1:-595229 MS.gene025879:CDS
GCTCAGATCTGGGATACTGC+TGG 0.566767 7.1:-596409 MS.gene025879:CDS
TGGTAACAAAGGTGATCTTG+TGG 0.577617 7.1:-595314 MS.gene025879:CDS
TCATGTAGCTAGATGGATTG+AGG 0.580303 7.1:-595380 MS.gene025879:CDS
GTGATTGGTGATTCAGCAGT+AGG 0.583856 7.1:-596547 MS.gene025879:CDS
AAAATGAATCAGGAAATGAA+TGG 0.586232 7.1:-596622 MS.gene025879:CDS
ATCATGCTAATTGGTAACAA+AGG 0.587810 7.1:-595325 MS.gene025879:CDS
AGTTATGTCATACACCAGCA+TGG 0.629305 7.1:+595420 None:intergenic
GGTGCACACGGAAGATGCTG+TGG 0.634616 7.1:-595281 MS.gene025879:CDS
ACCAATTAGCATGATGACGA+TGG 0.636916 7.1:+595333 None:intergenic
CTAGATCAACAAGAACATGA+AGG 0.637055 7.1:+595037 None:intergenic
GAATCAGGAAATGAATGGTG+TGG 0.639083 7.1:-596617 MS.gene025879:CDS
GGACCAAAGAGTGGTGCACA+CGG 0.641793 7.1:-595293 MS.gene025879:CDS
AGATGCTGTGGAGTTTGCAG+AGG 0.660975 7.1:-595269 MS.gene025879:CDS
ATACTACAGAGGAGCATTAG+GGG 0.672037 7.1:-595443 MS.gene025879:CDS
TGAATGGTGTGGAAGCTGAA+AGG 0.673720 7.1:-596606 MS.gene025879:CDS
CTAGATGGATTGAGGAACTG+CGG 0.688972 7.1:-595372 MS.gene025879:CDS
TGATCTTGTGGACCAAAGAG+TGG 0.691658 7.1:-595302 MS.gene025879:CDS
GTTACAAGTGCATACTACAG+AGG 0.706445 7.1:-595454 MS.gene025879:CDS
ATAATAATATAGGTACAGAG+CGG 0.790789 7.1:-595476 MS.gene025879:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAATATAATAATAT+AGG - chr7.1:596175-596194 MS.gene025879:intron 0.0%
!!! TTTTCATTAAGAAAATTTAT+AGG - chr7.1:596033-596052 MS.gene025879:intron 10.0%
!! GATTTAGTTAGTAAAAAATT+TGG - chr7.1:595629-595648 MS.gene025879:intron 15.0%
!! GGTGAAAATATAAAAAATAA+AGG - chr7.1:595831-595850 MS.gene025879:intron 15.0%
!! TCAAAAATAGATATAATTTC+AGG - chr7.1:596567-596586 MS.gene025879:CDS 15.0%
!! ACAGAAATTTATTAATCACT+TGG + chr7.1:595698-595717 None:intergenic 20.0%
!! ACCTATAAATTAACATAATC+AGG + chr7.1:595857-595876 None:intergenic 20.0%
!! ATAATATAAAAGACATGTCT+CGG - chr7.1:596122-596141 MS.gene025879:intron 20.0%
!! CAGAAATTTATTAATCACTT+GGG + chr7.1:595697-595716 None:intergenic 20.0%
!! CTAAAAAAAGTTAAAAGTGA+TGG + chr7.1:595321-595340 None:intergenic 20.0%
!! CTAAATATGGCAATTATAAT+AGG + chr7.1:595469-595488 None:intergenic 20.0%
!! GAAAATAGATTATGTGTTTA+AGG - chr7.1:595086-595105 MS.gene025879:CDS 20.0%
!! GAAAATTGGTCATAATAATT+CGG + chr7.1:595785-595804 None:intergenic 20.0%
! ATAATAATATAGGTACAGAG+CGG - chr7.1:596185-596204 MS.gene025879:intron 25.0%
! ATTGCTTGAAGAGATTAATA+AGG - chr7.1:596482-596501 MS.gene025879:CDS 25.0%
! CAATTAGAGAAACATCTAAT+TGG + chr7.1:595970-595989 None:intergenic 25.0%
! CTTACTATAATTGCCATATT+TGG - chr7.1:595388-595407 MS.gene025879:CDS 25.0%
! GCCTGATTATGTTAATTTAT+AGG - chr7.1:595853-595872 MS.gene025879:intron 25.0%
! TATATTATCATGTGCATGTT+TGG + chr7.1:596110-596129 None:intergenic 25.0%
! TTCAAGTAAGAAACCAAATA+TGG + chr7.1:595404-595423 None:intergenic 25.0%
!! ACATAATCTATTTTCTCTTG+TGG + chr7.1:595081-595100 None:intergenic 25.0%
!! ATTAGATGCAACTAAAGTTT+TGG + chr7.1:595911-595930 None:intergenic 25.0%
!! TATTATGACCAATTTTCACT+AGG - chr7.1:595788-595807 MS.gene025879:intron 25.0%
!!! CAAATAGTAGAAAGTACTAA+TGG - chr7.1:595588-595607 MS.gene025879:intron 25.0%
!!! GATTTTGAATACATTGGTTT+TGG + chr7.1:595533-595552 None:intergenic 25.0%
!!! TAGGTTTTGTAAAATCATGT+TGG - chr7.1:596052-596071 MS.gene025879:intron 25.0%
!!! TTTTTTGTGTCTAAAGTTTG+TGG + chr7.1:595431-595450 None:intergenic 25.0%
AACAATGTTGCTACACTTAA+AGG - chr7.1:596543-596562 MS.gene025879:CDS 30.0%
ACAATGTTGCTACACTTAAA+GGG - chr7.1:596544-596563 MS.gene025879:CDS 30.0%
ACTAGAACTGTCACAATTAA+TGG - chr7.1:595216-595235 MS.gene025879:CDS 30.0%
ATGTATTCAAAATCCCAATC+TGG - chr7.1:595539-595558 MS.gene025879:intron 30.0%
GGTAAGTAGGAAACTAAATA+TGG + chr7.1:595482-595501 None:intergenic 30.0%
TGTATTCAAAATCCCAATCT+GGG - chr7.1:595540-595559 MS.gene025879:intron 30.0%
TGTCAATAAGATAGCTCATT+CGG + chr7.1:595946-595965 None:intergenic 30.0%
TTAATAAGGTTGTCTCCAAA+AGG - chr7.1:596496-596515 MS.gene025879:CDS 30.0%
TTTGACTCAAAATCAACCAT+TGG - chr7.1:595180-595199 MS.gene025879:CDS 30.0%
! ATCATGCTAATTGGTAACAA+AGG - chr7.1:596336-596355 MS.gene025879:intron 30.0%
! ATTAGATTCTAACGACCTTT+TGG + chr7.1:596514-596533 None:intergenic 30.0%
! GATTGGGATTTTGAATACAT+TGG + chr7.1:595539-595558 None:intergenic 30.0%
!! TGTAAAATCATGTTGGTTCA+AGG - chr7.1:596059-596078 MS.gene025879:intron 30.0%
!!! CATTGGTTTTGGTAGTTTTT+TGG + chr7.1:595522-595541 None:intergenic 30.0%
!!! GCAACTAAAGTTTTGGTTAT+AGG + chr7.1:595904-595923 None:intergenic 30.0%
!!! TTTTTTGGTCTGAAGTTTGT+GGG + chr7.1:595507-595526 None:intergenic 30.0%
AGGTGATTTCAACAAATCCA+TGG - chr7.1:596079-596098 MS.gene025879:intron 35.0%
ATTTCAAGACAACCCAGATT+GGG + chr7.1:595555-595574 None:intergenic 35.0%
GGAAGAAAAGAAACCTTTCT+TGG + chr7.1:595278-595297 None:intergenic 35.0%
TATTTCAAGACAACCCAGAT+TGG + chr7.1:595556-595575 None:intergenic 35.0%
! AATTTTCACTAGGAACCAGA+TGG - chr7.1:595798-595817 MS.gene025879:intron 35.0%
! AGTCTGAAATTCAACTCCAA+TGG + chr7.1:595199-595218 None:intergenic 35.0%
! ATCTGGTTCCTAGTGAAAAT+TGG + chr7.1:595799-595818 None:intergenic 35.0%
! GTGTTTAAGGTTGTTGTGAT+TGG - chr7.1:595099-595118 MS.gene025879:CDS 35.0%
!!! GTTTTTTGGTCTGAAGTTTG+TGG + chr7.1:595508-595527 None:intergenic 35.0%
AACACATACAACTAGCCAAC+CGG - chr7.1:595663-595682 MS.gene025879:intron 40.0%
AACTCATCAAAGCTCAGATC+TGG - chr7.1:595241-595260 MS.gene025879:CDS 40.0%
AAGTTTGTGGGATGGTAAGT+AGG + chr7.1:595495-595514 None:intergenic 40.0%
AATCACTTGGGATCAACAAC+CGG + chr7.1:595685-595704 None:intergenic 40.0%
ACTCATCAAAGCTCAGATCT+GGG - chr7.1:595242-595261 MS.gene025879:CDS 40.0%
AGTTATGTCATACACCAGCA+TGG + chr7.1:596244-596263 None:intergenic 40.0%
CGTTTGATCATGTAGCTAGA+TGG - chr7.1:596274-596293 MS.gene025879:intron 40.0%
CTGAAGTCTCAGAGAAAAAG+AGG + chr7.1:596425-596444 None:intergenic 40.0%
GAAAGACTCAAATGCTGTCA+AGG - chr7.1:595136-595155 MS.gene025879:CDS 40.0%
GAATCAGGAAATGAATGGTG+TGG - chr7.1:595044-595063 MS.gene025879:CDS 40.0%
GACAAGCAAGTAAAACAGAG+AGG + chr7.1:595299-595318 None:intergenic 40.0%
GTGCATGTTTGGTATTTCCA+TGG + chr7.1:596099-596118 None:intergenic 40.0%
GTTACAAGTGCATACTACAG+AGG - chr7.1:596207-596226 MS.gene025879:intron 40.0%
TCACCTTAAGACAATCCATC+TGG + chr7.1:595816-595835 None:intergenic 40.0%
TCCATCGTCATCATGCTAAT+TGG - chr7.1:596327-596346 MS.gene025879:intron 40.0%
TGGTAACAAAGGTGATCTTG+TGG - chr7.1:596347-596366 MS.gene025879:intron 40.0%
! ACCAATTAGCATGATGACGA+TGG + chr7.1:596331-596350 None:intergenic 40.0%
!! ATACTACAGAGGAGCATTAG+GGG - chr7.1:596218-596237 MS.gene025879:intron 40.0%
!! CATACTACAGAGGAGCATTA+GGG - chr7.1:596217-596236 MS.gene025879:intron 40.0%
!! GAACCAGATGGATTGTCTTA+AGG - chr7.1:595810-595829 MS.gene025879:intron 40.0%
!! TCATGTAGCTAGATGGATTG+AGG - chr7.1:596281-596300 MS.gene025879:intron 40.0%
TGAATGGTGTGGAAGCTGAA+AGG - chr7.1:595055-595074 MS.gene025879:CDS 45.0%
TGATCTTGTGGACCAAAGAG+TGG - chr7.1:596359-596378 MS.gene025879:intron 45.0%
! CATGATGACGATGGAGTTGT+CGG + chr7.1:596322-596341 None:intergenic 45.0%
! GTGATTGGTGATTCAGCAGT+AGG - chr7.1:595114-595133 MS.gene025879:CDS 45.0%
! TTGGTCTGAAGTTTGTGGGA+TGG + chr7.1:595503-595522 None:intergenic 45.0%
!! CTAGATGGATTGAGGAACTG+CGG - chr7.1:596289-596308 MS.gene025879:intron 45.0%
!! GCATACTACAGAGGAGCATT+AGG - chr7.1:596216-596235 MS.gene025879:intron 45.0%
ACTTGGGATCAACAACCGGT+TGG + chr7.1:595681-595700 None:intergenic 50.0%
AGATGCTGTGGAGTTTGCAG+AGG - chr7.1:596392-596411 MS.gene025879:intron 50.0%
GTGGAGTTTGCAGAGGATCA+GGG - chr7.1:596399-596418 MS.gene025879:intron 50.0%
TGTGGAGTTTGCAGAGGATC+AGG - chr7.1:596398-596417 MS.gene025879:intron 50.0%
! TCTGAGACTTCAGCGTTCAG+TGG - chr7.1:596432-596451 MS.gene025879:CDS 50.0%
CTTCCGTGTGCACCACTCTT+TGG + chr7.1:596374-596393 None:intergenic 55.0%
GGACCAAAGAGTGGTGCACA+CGG - chr7.1:596368-596387 MS.gene025879:intron 55.0%
GGGATACTGCTGGCCAAGAA+AGG - chr7.1:595262-595281 MS.gene025879:CDS 55.0%
! GCTCAGATCTGGGATACTGC+TGG - chr7.1:595252-595271 MS.gene025879:CDS 55.0%
GGTGCACACGGAAGATGCTG+TGG - chr7.1:596380-596399 MS.gene025879:intron 60.0%
!! AGGAGCATTAGGGGCCATGC+TGG - chr7.1:596227-596246 MS.gene025879:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 595042 596641 595042 ID=MS.gene025879
chr7.1 mRNA 595042 596641 595042 ID=MS.gene025879.t1;Parent=MS.gene025879
chr7.1 exon 596400 596641 596400 ID=MS.gene025879.t1.exon1;Parent=MS.gene025879.t1
chr7.1 CDS 596400 596641 596400 ID=cds.MS.gene025879.t1;Parent=MS.gene025879.t1
chr7.1 exon 595042 595486 595042 ID=MS.gene025879.t1.exon2;Parent=MS.gene025879.t1
chr7.1 CDS 595042 595486 595042 ID=cds.MS.gene025879.t1;Parent=MS.gene025879.t1
Gene Sequence

>MS.gene025879

ATGAATCAGGAAATGAATGGTGTGGAAGCTGAAAGGCCACAAGAGAAAATAGATTATGTGTTTAAGGTTGTTGTGATTGGTGATTCAGCAGTAGGAAAGACTCAAATGCTGTCAAGGTTTGCAAAGAATGAGTTCTGTTTTGACTCAAAATCAACCATTGGAGTTGAATTTCAGACTAGAACTGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTTTCTTTTCTTCCTCTCTGTTTTACTTGCTTGTCCATCACTTTTAACTTTTTTTAGTTTATTGCATAACAATGTTATTGTGATCTCAATTTGACATTAAGAATCTTACTATAATTGCCATATTTGGTTTCTTACTTGAAAATTCCACAAACTTTAGACACAAAAAATACTACATTAAGAATCCTATTATAATTGCCATATTTAGTTTCCTACTTACCATCCCACAAACTTCAGACCAAAAAACTACCAAAACCAATGTATTCAAAATCCCAATCTGGGTTGTCTTGAAATAGATATCTGTTTTCAAATAGTAGAAAGTACTAATGGATGTTAAATAATGAAATTGATTTAGTTAGTAAAAAATTTGGTTATGCAATGCAACACATACAACTAGCCAACCGGTTGTTGATCCCAAGTGATTAATAAATTTCTGTTAAGATCGAATCAGTCAGAGCAATTCGAGTTCGATTTATGACTTAAACAACTATTGATTCGAGTCCGAATTATTATGACCAATTTTCACTAGGAACCAGATGGATTGTCTTAAGGTGAAAATATAAAAAATAAAGGCCTGATTATGTTAATTTATAGGTAAATATTCATAATTTATCTTTCAGCCTATAACCAAAACTTTAGTTGCATCTAATTAATTTATATTTCCGAATGAGCTATCTTATTGACATCCAATTAGATGTTTCTCTAATTGAAATATCAGCAAAATAACATTAATAATCATTTTTAGATAAGTTTTTTCATTAAGAAAATTTATAGGTTTTGTAAAATCATGTTGGTTCAAGGTGATTTCAACAAATCCATGGAAATACCAAACATGCACATGATAATATAAAAGACATGTCTCGGATAAATTATCATGATTTTGTTGCTAATGTTATATAATAATATAATAATATAGGTACAGAGCGGTTACAAGTGCATACTACAGAGGAGCATTAGGGGCCATGCTGGTGTATGACATAACTAAAAGACAAACGTTTGATCATGTAGCTAGATGGATTGAGGAACTGCGGTCACACGCCGACAACTCCATCGTCATCATGCTAATTGGTAACAAAGGTGATCTTGTGGACCAAAGAGTGGTGCACACGGAAGATGCTGTGGAGTTTGCAGAGGATCAGGGCCTCTTTTTCTCTGAGACTTCAGCGTTCAGTGGTGAAAATGTGAACTCTGCATTTTTCAAATTGCTTGAAGAGATTAATAAGGTTGTCTCCAAAAGGTCGTTAGAATCTAATAATAGTAACAACAATGTTGCTACACTTAAAGGGTCAAAAATAGATATAATTTCAGGTTCTGAATTAGAAATTACTGAAATGAAGAACGTACCTTCATGTTCTTGTTGA

Protein sequence

>MS.gene025879.t1

MNQEMNGVEAERPQEKIDYVFKVVVIGDSAVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWIEELRSHADNSIVIMLIGNKGDLVDQRVVHTEDAVEFAEDQGLFFSETSAFSGENVNSAFFKLLEEINKVVSKRSLESNNSNNNVATLKGSKIDIISGSELEITEMKNVPSCSC