AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021166


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021166.t1 MTR_4g064897 100.000 215 0 0 1 215 1 215 1.98e-161 444
MS.gene021166.t1 MTR_3g069510 84.651 215 32 1 1 214 1 215 3.39e-134 375
MS.gene021166.t1 MTR_2g005510 75.000 212 51 2 6 215 9 220 8.14e-117 332
MS.gene021166.t1 MTR_2g075950 68.692 214 66 1 3 215 4 217 1.46e-109 313
MS.gene021166.t1 MTR_2g014990 68.519 216 63 3 2 214 3 216 5.76e-106 304
MS.gene021166.t1 MTR_4g088090 67.593 216 65 3 2 214 3 216 6.84e-105 301
MS.gene021166.t1 MTR_2g083860 69.626 214 63 2 3 214 4 217 1.31e-104 301
MS.gene021166.t1 MTR_4g079350 67.593 216 65 3 2 214 3 216 1.61e-104 300
MS.gene021166.t1 MTR_2g090865 67.136 213 66 3 5 215 4 214 6.52e-101 291
MS.gene021166.t1 MTR_8g089985 65.566 212 69 1 6 213 11 222 3.44e-97 282
MS.gene021166.t1 MTR_3g086980 63.208 212 74 1 6 213 10 221 1.13e-95 278
MS.gene021166.t1 MTR_1g052475 62.617 214 74 3 6 213 9 222 1.61e-92 270
MS.gene021166.t1 MTR_0262s0050 62.802 207 74 2 10 213 13 219 1.57e-91 268
MS.gene021166.t1 MTR_1g078200 58.491 212 81 2 10 214 12 223 1.40e-87 258
MS.gene021166.t1 MTR_8g027220 61.458 192 74 0 3 194 17 208 1.18e-85 253
MS.gene021166.t1 MTR_7g405790 55.556 207 89 1 11 214 14 220 8.51e-84 248
MS.gene021166.t1 MTR_7g051940 56.373 204 89 0 11 214 12 215 2.73e-81 241
MS.gene021166.t1 MTR_6g079550 54.630 216 95 3 1 214 1 215 7.13e-81 240
MS.gene021166.t1 MTR_8g036220 53.394 221 93 3 5 215 8 228 8.89e-81 241
MS.gene021166.t1 MTR_8g107070 53.883 206 94 1 6 210 8 213 5.19e-72 219
MS.gene021166.t1 MTR_7g117910 52.500 200 79 2 2 201 10 193 1.29e-68 209
MS.gene021166.t1 MTR_7g081700 46.445 211 104 2 5 215 1 202 1.18e-65 201
MS.gene021166.t1 MTR_8g006970 47.573 206 100 2 10 215 20 217 3.36e-64 198
MS.gene021166.t1 MTR_2g027660 45.755 212 106 3 9 214 3 211 6.22e-61 189
MS.gene021166.t1 MTR_8g006970 52.663 169 80 0 5 173 1 169 1.23e-60 188
MS.gene021166.t1 MTR_6g021790 54.430 158 72 0 9 166 3 160 3.37e-60 188
MS.gene021166.t1 MTR_1g115325 45.755 212 101 5 8 213 11 214 7.90e-60 187
MS.gene021166.t1 MTR_1g068740 44.495 218 107 5 4 215 7 216 3.04e-59 186
MS.gene021166.t1 MTR_1g068730 44.037 218 108 5 4 215 7 216 1.09e-58 184
MS.gene021166.t1 MTR_8g031660 44.928 207 110 2 9 214 3 206 1.37e-58 184
MS.gene021166.t1 MTR_7g100020 45.327 214 103 5 8 215 11 216 5.38e-58 182
MS.gene021166.t1 MTR_2g005500 46.316 190 101 1 7 195 4 193 2.47e-57 180
MS.gene021166.t1 MTR_8g031870 55.128 156 70 0 11 166 5 160 3.78e-57 179
MS.gene021166.t1 MTR_8g031830 45.366 205 100 3 11 214 5 198 4.64e-54 172
MS.gene021166.t1 MTR_4g063160 42.326 215 105 4 8 213 11 215 5.08e-54 172
MS.gene021166.t1 MTR_8g031680 50.000 166 83 0 9 174 3 168 1.90e-53 171
MS.gene021166.t1 MTR_2g096550 47.059 170 88 2 6 173 9 178 2.27e-53 171
MS.gene021166.t1 MTR_4g099470 45.087 173 86 2 43 215 15 178 3.05e-51 164
MS.gene021166.t1 MTR_3g064390 42.781 187 99 2 14 197 12 193 1.65e-49 160
MS.gene021166.t1 MTR_5g076590 42.781 187 99 2 14 197 12 193 3.28e-49 159
MS.gene021166.t1 MTR_1g094220 48.101 158 81 1 14 170 33 190 3.23e-48 157
MS.gene021166.t1 MTR_1g094220 48.408 157 80 1 14 169 33 189 4.74e-48 156
MS.gene021166.t1 MTR_1g094220 48.101 158 81 1 14 170 33 190 8.29e-48 156
MS.gene021166.t1 MTR_1g068730 50.758 132 65 0 4 135 7 138 1.97e-47 154
MS.gene021166.t1 MTR_8g093740 37.799 209 120 5 7 213 8 208 2.40e-47 155
MS.gene021166.t1 MTR_1g068740 50.000 134 67 0 4 137 7 140 4.65e-47 154
MS.gene021166.t1 MTR_7g103070 41.827 208 113 4 9 214 13 214 5.72e-47 154
MS.gene021166.t1 MTR_1g094220 48.387 155 79 1 14 167 33 187 7.34e-47 154
MS.gene021166.t1 MTR_8g090215 36.408 206 118 3 13 214 10 206 2.89e-45 149
MS.gene021166.t1 MTR_3g087160 41.401 157 92 0 13 169 10 166 3.00e-45 149
MS.gene021166.t1 MTR_8g103550 36.453 203 112 3 14 214 11 198 4.80e-45 149
MS.gene021166.t1 MTR_1g029450 38.278 209 120 5 8 214 13 214 6.75e-45 149
MS.gene021166.t1 MTR_5g013900 36.893 206 117 2 13 214 10 206 8.09e-45 148
MS.gene021166.t1 MTR_1g062760 45.349 172 91 3 9 178 11 181 8.98e-45 148
MS.gene021166.t1 MTR_3g096350 37.963 216 122 7 1 213 1 207 1.99e-44 147
MS.gene021166.t1 MTR_4g098950 34.634 205 122 2 13 214 10 205 3.82e-43 144
MS.gene021166.t1 MTR_4g069850 38.462 208 110 5 12 212 8 204 3.95e-43 144
MS.gene021166.t1 MTR_2g102060 38.614 202 111 3 14 215 12 200 9.40e-43 143
MS.gene021166.t1 MTR_1g090717 43.353 173 95 3 9 178 12 184 4.58e-42 141
MS.gene021166.t1 MTR_3g064390 47.200 125 66 0 14 138 12 136 1.88e-38 130
MS.gene021166.t1 MTR_4g012940 35.885 209 116 5 12 213 8 205 3.03e-38 132
MS.gene021166.t1 MTR_2g101890 40.000 165 92 3 12 169 10 174 4.52e-38 131
MS.gene021166.t1 MTR_3g096350 46.565 131 65 4 1 128 1 129 1.66e-36 125
MS.gene021166.t1 MTR_3g096350 46.565 131 65 4 1 128 1 129 4.23e-36 124
MS.gene021166.t1 MTR_1g097420 34.615 208 119 5 12 212 8 205 6.83e-36 125
MS.gene021166.t1 MTR_8g092020 36.471 170 101 2 7 169 7 176 1.05e-35 125
MS.gene021166.t1 MTR_7g103070 40.491 163 89 4 54 214 2 158 3.09e-32 114
MS.gene021166.t1 MTR_8g093740 34.682 173 104 4 43 213 10 175 5.40e-32 114
MS.gene021166.t1 MTR_6g039490 35.329 167 97 4 12 169 8 172 2.16e-31 114
MS.gene021166.t1 MTR_1g097420 31.963 219 129 7 1 212 27 232 2.73e-30 112
MS.gene021166.t1 MTR_1g069245 57.895 95 36 2 25 119 109 199 7.89e-28 105
MS.gene021166.t1 MTR_2g005500 32.821 195 90 2 7 200 4 158 2.93e-27 102
MS.gene021166.t1 MTR_3g107717 31.667 180 115 3 13 187 14 190 6.80e-25 97.8
MS.gene021166.t1 MTR_3g107707 31.667 180 115 3 13 187 14 190 7.32e-25 97.4
MS.gene021166.t1 MTR_3g107713 31.667 180 115 3 13 187 14 190 7.88e-25 97.4
MS.gene021166.t1 MTR_8g031810 45.192 104 43 1 11 114 5 94 8.75e-24 91.3
MS.gene021166.t1 MTR_2g078000 77.551 49 11 0 73 121 46 94 8.41e-23 89.0
MS.gene021166.t1 MTR_6g087980 29.293 198 123 6 12 194 6 201 2.65e-20 85.5
MS.gene021166.t1 MTR_4g088055 31.737 167 100 6 12 166 6 170 7.66e-20 84.0
MS.gene021166.t1 MTR_2g090875 31.737 167 100 5 12 166 6 170 8.42e-20 83.6
MS.gene021166.t1 MTR_4g113620 31.720 186 100 7 13 188 14 182 1.41e-19 83.6
MS.gene021166.t1 MTR_1452s0010 41.772 79 46 0 32 110 1 79 2.33e-19 80.1
MS.gene021166.t1 MTR_4g073250 31.757 148 91 4 12 158 6 144 7.66e-19 81.3
MS.gene021166.t1 MTR_3g078260 30.539 167 102 5 12 166 8 172 1.28e-18 80.9
MS.gene021166.t1 MTR_8g075240 32.609 138 83 4 12 148 6 134 5.51e-18 79.0
MS.gene021166.t1 MTR_2g078560 73.913 46 12 0 74 119 54 99 1.95e-17 79.3
MS.gene021166.t1 MTR_5g022600 31.884 138 84 4 12 148 6 134 8.05e-17 75.9
MS.gene021166.t1 MTR_3g078260 34.483 116 73 3 12 126 8 121 2.51e-16 73.2
MS.gene021166.t1 MTR_1g059590 30.909 165 104 4 9 173 395 549 4.85e-16 76.6
MS.gene021166.t1 MTR_1g059590 30.909 165 104 4 9 173 428 582 5.24e-16 76.3
MS.gene021166.t1 MTR_5g092060 28.824 170 113 2 13 176 105 272 8.94e-16 74.7
MS.gene021166.t1 MTR_1686s0010 35.165 91 59 0 32 122 1 91 2.65e-15 68.9
MS.gene021166.t1 MTR_3g053480 60.784 51 19 1 5 54 8 58 4.07e-15 67.8
MS.gene021166.t1 MTR_8g099250 60.784 51 19 1 5 54 8 58 2.85e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021166.t1 AT1G07410 90.233 215 20 1 1 215 1 214 1.75e-146 406
MS.gene021166.t1 AT3G46830 86.175 217 28 1 1 215 1 217 1.58e-136 381
MS.gene021166.t1 AT3G46830 86.175 217 28 1 1 215 1 217 1.58e-136 381
MS.gene021166.t1 AT5G59150 85.714 217 29 1 1 215 1 217 2.98e-136 380
MS.gene021166.t1 AT1G09630 74.537 216 54 1 1 215 1 216 5.44e-122 345
MS.gene021166.t1 AT4G18800 70.283 212 61 2 3 214 4 213 1.46e-109 313
MS.gene021166.t1 AT1G16920 69.626 214 63 2 2 214 3 215 8.41e-108 309
MS.gene021166.t1 AT5G45750 69.159 214 62 3 3 214 4 215 5.18e-107 306
MS.gene021166.t1 AT5G60860 68.981 216 62 3 2 214 3 216 6.88e-106 304
MS.gene021166.t1 AT1G06400 67.130 216 65 3 2 214 3 215 8.50e-104 298
MS.gene021166.t1 AT1G28550 65.741 216 70 2 2 214 3 217 5.79e-103 296
MS.gene021166.t1 AT3G15060 66.820 217 67 3 2 215 3 217 6.97e-103 296
MS.gene021166.t1 AT2G33870 65.741 216 70 2 3 215 4 218 8.41e-103 296
MS.gene021166.t1 AT4G18430 64.352 216 72 3 2 214 3 216 2.64e-101 292
MS.gene021166.t1 AT5G47960 64.019 214 73 2 6 215 9 222 2.27e-97 283
MS.gene021166.t1 AT5G59150 82.927 164 26 1 54 215 3 166 1.09e-95 276
MS.gene021166.t1 AT3G12160 63.507 211 74 2 6 213 9 219 1.65e-94 275
MS.gene021166.t1 AT5G65270 61.395 215 77 2 7 215 12 226 3.14e-93 272
MS.gene021166.t1 AT4G39990 59.535 215 72 3 10 215 15 223 3.18e-90 265
MS.gene021166.t1 AT5G47520 57.477 214 87 2 6 215 8 221 4.67e-87 256
MS.gene021166.t1 AT3G07410 56.019 216 93 1 1 214 1 216 3.81e-83 246
MS.gene021166.t1 AT1G05810 55.769 208 90 1 10 215 10 217 1.46e-82 245
MS.gene021166.t1 AT1G05810 55.769 208 90 1 10 215 56 263 3.76e-82 245
MS.gene021166.t1 AT2G31680 55.714 210 88 2 10 215 10 218 5.61e-82 243
MS.gene021166.t1 AT1G73640 56.039 207 86 1 6 207 7 213 2.23e-81 242
MS.gene021166.t1 AT2G43130 62.428 173 65 0 10 182 10 182 2.44e-79 236
MS.gene021166.t1 AT1G18200 52.036 221 93 2 6 213 7 227 5.60e-78 234
MS.gene021166.t1 AT1G01200 59.574 188 73 2 10 194 26 213 2.87e-75 227
MS.gene021166.t1 AT1G02130 46.919 211 104 2 5 215 1 203 1.87e-67 206
MS.gene021166.t1 AT5G47200 46.445 211 104 2 5 215 1 202 7.79e-66 202
MS.gene021166.t1 AT4G17530 46.445 211 104 2 5 215 1 202 8.05e-66 202
MS.gene021166.t1 AT4G35860 48.325 209 103 3 9 213 3 210 5.48e-64 197
MS.gene021166.t1 AT3G11730 46.411 209 106 2 5 213 1 203 6.67e-62 192
MS.gene021166.t1 AT4G17170 45.972 211 105 3 9 213 3 210 4.55e-61 190
MS.gene021166.t1 AT3G53610 45.327 214 103 4 8 215 11 216 6.87e-60 187
MS.gene021166.t1 AT3G53610 45.327 214 103 4 8 215 11 216 6.87e-60 187
MS.gene021166.t1 AT3G53610 45.327 214 103 4 8 215 11 216 6.87e-60 187
MS.gene021166.t1 AT5G59840 43.056 216 105 3 8 215 11 216 9.56e-59 184
MS.gene021166.t1 AT5G03520 45.283 212 111 3 4 214 7 214 1.01e-58 184
MS.gene021166.t1 AT3G09900 44.340 212 115 3 4 214 7 216 2.00e-58 184
MS.gene021166.t1 AT4G17160 45.146 206 108 2 9 213 3 204 3.33e-58 182
MS.gene021166.t1 AT3G46060 44.498 209 112 2 8 215 11 216 3.69e-58 183
MS.gene021166.t1 AT3G46060 44.498 209 112 2 8 215 11 216 3.69e-58 183
MS.gene021166.t1 AT3G46060 44.498 209 112 2 8 215 11 216 3.69e-58 183
MS.gene021166.t1 AT3G54840 49.682 157 78 1 14 169 35 191 9.28e-50 161
MS.gene021166.t1 AT3G54840 49.359 156 78 1 15 169 2 157 1.72e-49 159
MS.gene021166.t1 AT4G19640 39.303 201 110 2 14 214 12 200 1.99e-49 160
MS.gene021166.t1 AT3G54840 49.677 155 77 1 14 167 35 189 3.34e-49 159
MS.gene021166.t1 AT5G45130 40.594 202 106 4 14 214 12 200 4.69e-48 156
MS.gene021166.t1 AT1G43890 43.784 185 98 4 7 189 8 188 4.91e-47 154
MS.gene021166.t1 AT1G43890 43.784 185 98 4 7 189 8 188 4.91e-47 154
MS.gene021166.t1 AT1G43890 43.784 185 98 4 7 189 8 188 4.91e-47 154
MS.gene021166.t1 AT5G45130 40.500 200 105 4 16 214 22 208 8.46e-47 154
MS.gene021166.t1 AT5G03530 42.788 208 110 5 9 214 10 210 8.97e-47 154
MS.gene021166.t1 AT5G03530 42.788 208 110 5 9 214 10 210 8.97e-47 154
MS.gene021166.t1 AT4G35860 46.914 162 81 3 56 213 4 164 1.84e-45 149
MS.gene021166.t1 AT4G39890 41.772 158 91 1 13 169 10 167 2.00e-44 147
MS.gene021166.t1 AT5G03520 43.195 169 91 3 47 214 40 204 5.41e-44 146
MS.gene021166.t1 AT5G10260 34.951 206 121 2 13 214 10 206 8.51e-43 143
MS.gene021166.t1 AT2G44610 34.783 207 121 2 13 214 10 207 2.55e-42 142
MS.gene021166.t1 AT2G22290 38.854 157 96 0 13 169 10 166 6.85e-42 141
MS.gene021166.t1 AT3G18820 37.500 208 112 5 12 212 8 204 5.03e-41 139
MS.gene021166.t1 AT1G52280 36.058 208 115 5 12 212 8 204 7.31e-40 135
MS.gene021166.t1 AT5G64990 38.854 157 96 0 13 169 8 164 2.30e-39 134
MS.gene021166.t1 AT4G19640 44.615 130 72 0 14 143 12 141 1.23e-38 130
MS.gene021166.t1 AT4G19640 38.650 163 98 2 14 176 12 172 1.64e-38 132
MS.gene021166.t1 AT1G49300 36.058 208 115 5 12 212 8 204 1.31e-37 130
MS.gene021166.t1 AT1G49300 36.058 208 115 5 12 212 8 204 1.31e-37 130
MS.gene021166.t1 AT3G09910 42.442 172 96 3 9 178 10 180 2.83e-37 129
MS.gene021166.t1 AT3G09910 42.442 172 96 3 9 178 10 180 2.83e-37 129
MS.gene021166.t1 AT3G09910 42.442 172 96 3 9 178 10 180 2.83e-37 129
MS.gene021166.t1 AT3G16100 34.135 208 119 5 12 212 8 204 5.55e-37 128
MS.gene021166.t1 AT5G64990 37.195 164 96 1 13 169 8 171 1.62e-36 127
MS.gene021166.t1 AT3G09910 42.515 167 93 3 9 173 10 175 5.57e-36 125
MS.gene021166.t1 AT3G09910 42.515 167 93 3 9 173 10 175 5.57e-36 125
MS.gene021166.t1 AT1G22740 37.576 165 96 3 12 169 8 172 1.01e-35 125
MS.gene021166.t1 AT2G21880 36.970 165 97 3 12 169 9 173 5.53e-35 123
MS.gene021166.t1 AT4G09720 37.576 165 96 3 12 169 8 172 7.74e-35 123
MS.gene021166.t1 AT4G09720 36.471 170 96 3 12 169 8 177 7.56e-34 120
MS.gene021166.t1 AT5G46025 52.830 106 49 1 74 178 6 111 2.42e-33 116
MS.gene021166.t1 AT4G09720 35.227 176 96 3 12 169 8 183 7.70e-33 118
MS.gene021166.t1 AT5G39620 35.976 164 98 3 13 169 6 169 6.07e-30 110
MS.gene021166.t1 AT4G08190 78.125 64 11 1 103 166 67 127 2.74e-28 103
MS.gene021166.t1 AT2G21880 35.135 148 89 3 29 169 1 148 1.47e-26 101
MS.gene021166.t1 AT2G21880 35.135 148 89 3 29 169 1 148 1.47e-26 101
MS.gene021166.t1 AT5G55080 34.416 154 98 3 13 166 14 164 1.97e-26 101
MS.gene021166.t1 AT2G21880 32.121 165 97 4 12 169 9 165 3.17e-25 98.2
MS.gene021166.t1 AT5G20010 30.500 200 121 4 13 207 14 200 4.97e-25 98.2
MS.gene021166.t1 AT5G20020 31.667 180 115 3 13 187 14 190 7.27e-25 97.8
MS.gene021166.t1 AT5G55190 31.844 179 114 3 13 186 14 189 7.67e-25 97.4
MS.gene021166.t1 AT4G09720 37.681 138 79 3 39 169 1 138 1.19e-24 95.9
MS.gene021166.t1 AT4G09720 37.681 138 79 3 39 169 1 138 1.19e-24 95.9
MS.gene021166.t1 AT4G09720 37.681 138 79 3 39 169 1 138 1.19e-24 95.9
MS.gene021166.t1 AT2G44690 33.333 180 106 6 12 179 18 195 2.22e-24 96.3
MS.gene021166.t1 AT4G28950 28.571 182 118 5 12 183 6 185 2.66e-20 85.5
MS.gene021166.t1 AT4G35020 33.793 145 86 4 12 155 6 141 2.87e-20 85.1
MS.gene021166.t1 AT4G35020 33.793 145 86 4 12 155 6 141 2.87e-20 85.1
MS.gene021166.t1 AT4G35020 33.793 145 86 4 12 155 6 141 2.87e-20 85.1
MS.gene021166.t1 AT3G48040 29.208 202 125 6 12 201 8 203 6.03e-20 84.3
MS.gene021166.t1 AT3G48040 34.483 145 85 4 12 155 8 143 1.10e-19 83.2
MS.gene021166.t1 AT5G62880 33.793 145 86 4 12 155 8 143 4.07e-19 81.6
MS.gene021166.t1 AT5G62880 29.282 181 100 5 12 173 8 179 4.21e-19 82.4
MS.gene021166.t1 AT5G45970 33.793 145 86 4 12 155 6 141 4.28e-19 82.0
MS.gene021166.t1 AT1G75840 33.333 138 82 4 12 148 6 134 2.70e-18 79.7
MS.gene021166.t1 AT1G20090 32.609 138 83 4 12 148 5 133 4.50e-18 79.0
MS.gene021166.t1 AT3G51300 30.909 165 100 6 14 166 8 170 1.20e-17 78.2
MS.gene021166.t1 AT4G35950 32.609 138 83 4 12 148 6 134 1.49e-17 77.8
MS.gene021166.t1 AT2G17800 32.609 138 83 4 12 148 6 134 1.58e-17 77.8
MS.gene021166.t1 AT2G17800 32.609 138 83 4 12 148 6 134 1.58e-17 77.8
MS.gene021166.t1 AT4G35020 35.088 114 71 3 14 126 8 119 1.09e-16 74.3
MS.gene021166.t1 AT4G35020 35.088 114 71 3 14 126 8 119 1.09e-16 74.3

Find 55 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGGTGGCTGCGTGAATTA+AGG 0.233394 4.4:+41530961 MS.gene021166:CDS
GACTGTAAAGGCACAGATTT+GGG 0.346030 4.4:+41530827 MS.gene021166:CDS
GAACCATCTTAGAGCTGTTT+CGG 0.347178 4.4:+41531037 MS.gene021166:CDS
ACCAACAGCTCCTCTGTAAT+AGG 0.370535 4.4:-41530889 None:intergenic
TGGAAGTACCTGAAGGGTTC+TGG 0.372210 4.4:-41529888 None:intergenic
TTGGAGTCTAAATCTACTAT+TGG 0.376344 4.4:+41529851 MS.gene021166:CDS
ATGATAAATCTCTGTCAATA+TGG 0.378805 4.4:-41531153 None:intergenic
ATTCGCCACCAGAACCCTTC+AGG 0.400128 4.4:+41529880 MS.gene021166:CDS
AGACTGTAAAGGCACAGATT+TGG 0.408612 4.4:+41530826 MS.gene021166:CDS
CAGGTGGCTGCGTGAATTAA+GGG 0.408791 4.4:+41530962 MS.gene021166:CDS
CAACATTGATGGTGGTTCCT+TGG 0.417789 4.4:-41531232 None:intergenic
GCAGCTGGTACCTCACTTCC+TGG 0.431529 4.4:+41531209 MS.gene021166:CDS
ACAGCAGCCTCTCTTTGTAT+TGG 0.436355 4.4:-41531267 None:intergenic
GTAAATCCAACATTCTCTCT+AGG 0.462112 4.4:+41529807 MS.gene021166:CDS
AAATCTCTGTCAATATGGTC+TGG 0.463166 4.4:-41531148 None:intergenic
GATTTGGGACACAGCCGGTC+AGG 0.472434 4.4:+41530842 MS.gene021166:CDS
CTGGAATGCCTTCTCAATGT+TGG 0.480200 4.4:-41531129 None:intergenic
TTGATCGGAGATTCTGGTGT+TGG 0.486858 4.4:+41529785 MS.gene021166:CDS
GAGAAGATCTATGGCGCATA+GGG 0.496739 4.4:+41529727 None:intergenic
TTGATGGTGGTTCCTTGGCC+AGG 0.497262 4.4:-41531227 None:intergenic
CCACCTGTTGACATTGTCAA+AGG 0.506270 4.4:-41530946 None:intergenic
AAACCTTTGACAATGTCAAC+AGG 0.509017 4.4:+41530943 MS.gene021166:CDS
TTGTATATGACATTACTAAG+AGG 0.510206 4.4:+41530919 MS.gene021166:CDS
CGGTCAAGCATTGGCAGAGA+AGG 0.513673 4.4:+41531067 MS.gene021166:CDS
CCTCCGAAACAGCTCTAAGA+TGG 0.521686 4.4:-41531040 None:intergenic
GGAGGATGACGGTCAAGCAT+TGG 0.525571 4.4:+41531058 MS.gene021166:CDS
AGATGAATCTGCAACATTGA+TGG 0.526989 4.4:-41531243 None:intergenic
GCCTATTACAGAGGAGCTGT+TGG 0.537767 4.4:+41530888 MS.gene021166:CDS
AGCTCCTCTGTAATAGGCAC+TGG 0.538985 4.4:-41530883 None:intergenic
CTTGCAGCTCAGGAAGCAGC+TGG 0.539441 4.4:+41531194 MS.gene021166:CDS
TGTAAACCTAGAGAGAATGT+TGG 0.541295 4.4:-41529813 None:intergenic
GGTTCCTTGGCCAGGAAGTG+AGG 0.548018 4.4:-41531219 None:intergenic
AACATAGTGATCATGATGGC+AGG 0.549455 4.4:+41530999 MS.gene021166:CDS
AAGATCTATGGCGCATAGGG+TGG 0.554795 4.4:+41529730 None:intergenic
GGAGAAGATCTATGGCGCAT+AGG 0.558633 4.4:+41529726 None:intergenic
TGTCTTCCTCCACAGGTAGA+GGG 0.565584 4.4:+41530801 MS.gene021166:intron
TGCACGGTACCGCTCCTGAC+CGG 0.575514 4.4:-41530856 None:intergenic
GCACAGATTTGGGACACAGC+CGG 0.589077 4.4:+41530837 MS.gene021166:CDS
AGAGCTGTTTCGGAGGATGA+CGG 0.603075 4.4:+41531047 MS.gene021166:CDS
TCATCTGCCAATACAAAGAG+AGG 0.610381 4.4:+41531260 MS.gene021166:CDS
ATTACCAGTGCCTATTACAG+AGG 0.615988 4.4:+41530879 MS.gene021166:CDS
CCATCTTAGAGCTGTTTCGG+AGG 0.619143 4.4:+41531040 MS.gene021166:CDS
GGTACCTCACTTCCTGGCCA+AGG 0.623787 4.4:+41531215 MS.gene021166:CDS
CAAGCATTGGCAGAGAAGGA+AGG 0.624298 4.4:+41531071 MS.gene021166:CDS
GGAAGCAACCAACATTGAGA+AGG 0.627086 4.4:+41531121 MS.gene021166:CDS
AGAAATTGGAAGTACCTGAA+GGG 0.628923 4.4:-41529894 None:intergenic
AATAGGCACTGGTAATTGCA+CGG 0.632997 4.4:-41530872 None:intergenic
GGTAGAGGGAAAGACTGTAA+AGG 0.636965 4.4:+41530815 MS.gene021166:intron
GGGACACAGCCGGTCAGGAG+CGG 0.638848 4.4:+41530847 MS.gene021166:CDS
TTCTAACATAGTGATCATGA+TGG 0.639950 4.4:+41530995 MS.gene021166:CDS
TCACTATGTTAGAATCCGCA+TGG 0.651563 4.4:-41530986 None:intergenic
AAGTACCTGAAGGGTTCTGG+TGG 0.681997 4.4:-41529885 None:intergenic
CCTTTGACAATGTCAACAGG+TGG 0.683264 4.4:+41530946 MS.gene021166:CDS
GCGTGAATTAAGGGACCATG+CGG 0.710292 4.4:+41530971 MS.gene021166:CDS
TGAATCTGCAACATTGATGG+TGG 0.711567 4.4:-41531240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAACTTAAATAACT+TGG - chr4.4:41530009-41530028 None:intergenic 10.0%
!!! GTTCGTAATATTTTTTAAAA+CGG - chr4.4:41530620-41530639 None:intergenic 15.0%
!! CTTAAATAACTTGGAAAATT+AGG - chr4.4:41530000-41530019 None:intergenic 20.0%
!!! ATTTTAAGTTATAACAACAG+AGG - chr4.4:41530650-41530669 None:intergenic 20.0%
! AGAAATCAAAAGAGAGAAAT+TGG - chr4.4:41529911-41529930 None:intergenic 25.0%
! ATGATAAATCTCTGTCAATA+TGG - chr4.4:41531156-41531175 None:intergenic 25.0%
! GGAAAATTAGGATTATTACA+AGG - chr4.4:41529988-41530007 None:intergenic 25.0%
! GTAACATTGTAATACAAACA+AGG - chr4.4:41530766-41530785 None:intergenic 25.0%
! TTGTATATGACATTACTAAG+AGG + chr4.4:41530919-41530938 MS.gene021166:CDS 25.0%
! TTGTATTACAATGTTACCAA+TGG + chr4.4:41530769-41530788 MS.gene021166:intron 25.0%
!! AAATTTTCTTTTGCTTGTGT+TGG + chr4.4:41530700-41530719 MS.gene021166:intron 25.0%
!!! TACAAGAAATGAGTTTTGTT+TGG + chr4.4:41529832-41529851 MS.gene021166:CDS 25.0%
CCAATAAAATTACATTCACC+TGG - chr4.4:41530340-41530359 None:intergenic 30.0%
GGATTATTACAAGGATCAAT+CGG - chr4.4:41529979-41529998 None:intergenic 30.0%
TGATATATGGTGTAATGAAG+TGG - chr4.4:41530548-41530567 None:intergenic 30.0%
TTACAAATACACGCATTCAA+AGG - chr4.4:41529943-41529962 None:intergenic 30.0%
TTCTAACATAGTGATCATGA+TGG + chr4.4:41530995-41531014 MS.gene021166:CDS 30.0%
TTGGAGTCTAAATCTACTAT+TGG + chr4.4:41529851-41529870 MS.gene021166:CDS 30.0%
TTGTTTGAACTGATGGTATA+AGG + chr4.4:41530385-41530404 MS.gene021166:intron 30.0%
! CCAGGTGAATGTAATTTTAT+TGG + chr4.4:41530337-41530356 MS.gene021166:intron 30.0%
!! TTGTTCAAGATCGTTTTGAT+CGG + chr4.4:41529770-41529789 MS.gene021166:CDS 30.0%
AAACCTTTGACAATGTCAAC+AGG + chr4.4:41530943-41530962 MS.gene021166:CDS 35.0%
AAATCTCTGTCAATATGGTC+TGG - chr4.4:41531151-41531170 None:intergenic 35.0%
AAGGTGGAATCGAATTTAGT+TGG - chr4.4:41530461-41530480 None:intergenic 35.0%
AAGTTTCTGCTAGTACCTTT+CGG + chr4.4:41530313-41530332 MS.gene021166:intron 35.0%
ACCATATATCACCATTCCAA+AGG + chr4.4:41530557-41530576 MS.gene021166:intron 35.0%
AGATGAATCTGCAACATTGA+TGG - chr4.4:41531246-41531265 None:intergenic 35.0%
CTACATTGATCTTAGCCAAA+AGG - chr4.4:41530492-41530511 None:intergenic 35.0%
GAAGACAAAGAAACAACCAT+TGG - chr4.4:41530788-41530807 None:intergenic 35.0%
GTAAATCCAACATTCTCTCT+AGG + chr4.4:41529807-41529826 MS.gene021166:CDS 35.0%
TATGGTGTAATGAAGTGGAA+TGG - chr4.4:41530543-41530562 None:intergenic 35.0%
TGTAAACCTAGAGAGAATGT+TGG - chr4.4:41529816-41529835 None:intergenic 35.0%
TTTGAACTGATGGTATAAGG+TGG + chr4.4:41530388-41530407 MS.gene021166:intron 35.0%
! AAATTCGATTCCACCTTTTC+CGG + chr4.4:41530464-41530483 MS.gene021166:intron 35.0%
! TTTTCTCGAAACATCTGCAT+TGG + chr4.4:41531100-41531119 MS.gene021166:CDS 35.0%
!! ACCTTTGGAATGGTGATATA+TGG - chr4.4:41530561-41530580 None:intergenic 35.0%
!! AGAAATTGGAAGTACCTGAA+GGG - chr4.4:41529897-41529916 None:intergenic 35.0%
!! GGTTCTGAATTCAGCATATT+TGG - chr4.4:41530236-41530255 None:intergenic 35.0%
AACATAGTGATCATGATGGC+AGG + chr4.4:41530999-41531018 MS.gene021166:CDS 40.0%
AATTCAGAACCCCAATGGTT+TGG + chr4.4:41530245-41530264 MS.gene021166:intron 40.0%
ACTGATGGTATAAGGTGGAA+TGG + chr4.4:41530393-41530412 MS.gene021166:intron 40.0%
ACTTCACTCAACCAAACCAT+TGG - chr4.4:41530259-41530278 None:intergenic 40.0%
AGCTTCAATTGCTGTGATCA+AGG + chr4.4:41530106-41530125 MS.gene021166:intron 40.0%
AGTTTCTGCTAGTACCTTTC+GGG + chr4.4:41530314-41530333 MS.gene021166:intron 40.0%
ATTACCAGTGCCTATTACAG+AGG + chr4.4:41530879-41530898 MS.gene021166:CDS 40.0%
CTTCACTCAACCAAACCATT+GGG - chr4.4:41530258-41530277 None:intergenic 40.0%
GAACCATCTTAGAGCTGTTT+CGG + chr4.4:41531037-41531056 MS.gene021166:CDS 40.0%
GCTTCAATTGCTGTGATCAA+GGG + chr4.4:41530107-41530126 MS.gene021166:intron 40.0%
GTACTAGCAGAAACTTGAAC+CGG - chr4.4:41530309-41530328 None:intergenic 40.0%
TCAAACAAGCCTTCAAGCTT+CGG - chr4.4:41530373-41530392 None:intergenic 40.0%
TCACTATGTTAGAATCCGCA+TGG - chr4.4:41530989-41531008 None:intergenic 40.0%
TCATCTGCCAATACAAAGAG+AGG + chr4.4:41531260-41531279 MS.gene021166:CDS 40.0%
TGAATCTGCAACATTGATGG+TGG - chr4.4:41531243-41531262 None:intergenic 40.0%
TTCACTCAACCAAACCATTG+GGG - chr4.4:41530257-41530276 None:intergenic 40.0%
! AATTCGATTCCACCTTTTCC+GGG + chr4.4:41530465-41530484 MS.gene021166:intron 40.0%
! AGACTGTAAAGGCACAGATT+TGG + chr4.4:41530826-41530845 MS.gene021166:CDS 40.0%
! GACTGTAAAGGCACAGATTT+GGG + chr4.4:41530827-41530846 MS.gene021166:CDS 40.0%
! TGAAGGCTTGTTTGAACTGA+TGG + chr4.4:41530378-41530397 MS.gene021166:intron 40.0%
!! AATAGGCACTGGTAATTGCA+CGG - chr4.4:41530875-41530894 None:intergenic 40.0%
!! ATCGTTTTGATCGGAGATTC+TGG + chr4.4:41529779-41529798 MS.gene021166:CDS 40.0%
!! GAGAAATTGGAAGTACCTGA+AGG - chr4.4:41529898-41529917 None:intergenic 40.0%
AAACACTCACCGAAGCTTGA+AGG + chr4.4:41530361-41530380 MS.gene021166:intron 45.0%
ACAGCAGCCTCTCTTTGTAT+TGG - chr4.4:41531270-41531289 None:intergenic 45.0%
ACCAACAGCTCCTCTGTAAT+AGG - chr4.4:41530892-41530911 None:intergenic 45.0%
AGTGATGAGATGTCACTCCA+AGG - chr4.4:41530587-41530606 None:intergenic 45.0%
CCACCTGTTGACATTGTCAA+AGG - chr4.4:41530949-41530968 None:intergenic 45.0%
CCTTTGACAATGTCAACAGG+TGG + chr4.4:41530946-41530965 MS.gene021166:CDS 45.0%
CTGGAATGCCTTCTCAATGT+TGG - chr4.4:41531132-41531151 None:intergenic 45.0%
GGAAGCAACCAACATTGAGA+AGG + chr4.4:41531121-41531140 MS.gene021166:CDS 45.0%
GGTAGAGGGAAAGACTGTAA+AGG + chr4.4:41530815-41530834 MS.gene021166:intron 45.0%
GTTTCTTTGTCTTCCTCCAC+AGG + chr4.4:41530794-41530813 MS.gene021166:intron 45.0%
TGCTGAATTCAGAACCCCAA+TGG + chr4.4:41530240-41530259 MS.gene021166:intron 45.0%
TTGATCGGAGATTCTGGTGT+TGG + chr4.4:41529785-41529804 MS.gene021166:CDS 45.0%
! ATTCGATTCCACCTTTTCCG+GGG + chr4.4:41530466-41530485 MS.gene021166:intron 45.0%
! TCCAAGGAACACCTTTGGAA+TGG - chr4.4:41530571-41530590 None:intergenic 45.0%
!! ACCATTCCAAAGGTGTTCCT+TGG + chr4.4:41530567-41530586 MS.gene021166:intron 45.0%
!! CAAAAAAGCACTTGCAGCTC+AGG + chr4.4:41531184-41531203 MS.gene021166:CDS 45.0%
!! CAACATTGATGGTGGTTCCT+TGG - chr4.4:41531235-41531254 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTCATTTT+TGG + chr4.4:41530020-41530039 MS.gene021166:intron 5.0%
ACAGGTGGCTGCGTGAATTA+AGG + chr4.4:41530961-41530980 MS.gene021166:CDS 50.0%
ACAGTCTTTCCCTCTACCTG+TGG - chr4.4:41530813-41530832 None:intergenic 50.0%
AGAAACTTGAACCGGCGACA+TGG - chr4.4:41530301-41530320 None:intergenic 50.0%
AGCTCCTCTGTAATAGGCAC+TGG - chr4.4:41530886-41530905 None:intergenic 50.0%
CAGGTGGCTGCGTGAATTAA+GGG + chr4.4:41530962-41530981 MS.gene021166:CDS 50.0%
GCCTATTACAGAGGAGCTGT+TGG + chr4.4:41530888-41530907 MS.gene021166:CDS 50.0%
GCGTGAATTAAGGGACCATG+CGG + chr4.4:41530971-41530990 MS.gene021166:CDS 50.0%
GTCACTCCAAGGAACACCTT+TGG - chr4.4:41530576-41530595 None:intergenic 50.0%
GTTTGTATGCACCATGTCGC+CGG + chr4.4:41530287-41530306 MS.gene021166:intron 50.0%
TGATCTTAGCCAAAAGGCCC+CGG - chr4.4:41530486-41530505 None:intergenic 50.0%
TGTCTTCCTCCACAGGTAGA+GGG + chr4.4:41530801-41530820 MS.gene021166:intron 50.0%
TTACATTCACCTGGCCCGAA+AGG - chr4.4:41530331-41530350 None:intergenic 50.0%
TTGTCTTCCTCCACAGGTAG+AGG + chr4.4:41530800-41530819 MS.gene021166:intron 50.0%
! AAGTACCTGAAGGGTTCTGG+TGG - chr4.4:41529888-41529907 None:intergenic 50.0%
! AGAGCTGTTTCGGAGGATGA+CGG + chr4.4:41531047-41531066 MS.gene021166:CDS 50.0%
! CCATCTTAGAGCTGTTTCGG+AGG + chr4.4:41531040-41531059 MS.gene021166:CDS 50.0%
!! CAAGCATTGGCAGAGAAGGA+AGG + chr4.4:41531071-41531090 MS.gene021166:CDS 50.0%
!! CCTCCGAAACAGCTCTAAGA+TGG - chr4.4:41531043-41531062 None:intergenic 50.0%
!! TGGAAGTACCTGAAGGGTTC+TGG - chr4.4:41529891-41529910 None:intergenic 50.0%
ATTCGCCACCAGAACCCTTC+AGG + chr4.4:41529880-41529899 MS.gene021166:CDS 55.0%
GTCTTTCCCTCTACCTGTGG+AGG - chr4.4:41530810-41530829 None:intergenic 55.0%
TAGCCAAAAGGCCCCGGAAA+AGG - chr4.4:41530480-41530499 None:intergenic 55.0%
! GCACAGATTTGGGACACAGC+CGG + chr4.4:41530837-41530856 MS.gene021166:CDS 55.0%
! GGAGGATGACGGTCAAGCAT+TGG + chr4.4:41531058-41531077 MS.gene021166:CDS 55.0%
!! CGGTCAAGCATTGGCAGAGA+AGG + chr4.4:41531067-41531086 MS.gene021166:CDS 55.0%
!! TTGATGGTGGTTCCTTGGCC+AGG - chr4.4:41531230-41531249 None:intergenic 55.0%
CCAAAAGGCCCCGGAAAAGG+TGG - chr4.4:41530477-41530496 None:intergenic 60.0%
CTGCTAGTACCTTTCGGGCC+AGG + chr4.4:41530319-41530338 MS.gene021166:intron 60.0%
CTTGCAGCTCAGGAAGCAGC+TGG + chr4.4:41531194-41531213 MS.gene021166:CDS 60.0%
GCAGCTGGTACCTCACTTCC+TGG + chr4.4:41531209-41531228 MS.gene021166:CDS 60.0%
GGTACCTCACTTCCTGGCCA+AGG + chr4.4:41531215-41531234 MS.gene021166:CDS 60.0%
GGTTCCTTGGCCAGGAAGTG+AGG - chr4.4:41531222-41531241 None:intergenic 60.0%
! CCACCTTTTCCGGGGCCTTT+TGG + chr4.4:41530474-41530493 MS.gene021166:intron 60.0%
! GATTTGGGACACAGCCGGTC+AGG + chr4.4:41530842-41530861 MS.gene021166:CDS 60.0%
TGCACGGTACCGCTCCTGAC+CGG - chr4.4:41530859-41530878 None:intergenic 65.0%
GGGACACAGCCGGTCAGGAG+CGG + chr4.4:41530847-41530866 MS.gene021166:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 41529737 41531298 41529737 ID=MS.gene021166
chr4.4 mRNA 41529737 41531298 41529737 ID=MS.gene021166.t1;Parent=MS.gene021166
chr4.4 exon 41529737 41529901 41529737 ID=MS.gene021166.t1.exon1;Parent=MS.gene021166.t1
chr4.4 CDS 41529737 41529901 41529737 ID=cds.MS.gene021166.t1;Parent=MS.gene021166.t1
chr4.4 exon 41530816 41531298 41530816 ID=MS.gene021166.t1.exon2;Parent=MS.gene021166.t1
chr4.4 CDS 41530816 41531298 41530816 ID=cds.MS.gene021166.t1;Parent=MS.gene021166.t1
Gene Sequence

>MS.gene021166

ATGGCGCATAGGGTGGATCATGAGTATGATTACTTGTTCAAGATCGTTTTGATCGGAGATTCTGGTGTTGGTAAATCCAACATTCTCTCTAGGTTTACAAGAAATGAGTTTTGTTTGGAGTCTAAATCTACTATTGGTGTTGAATTCGCCACCAGAACCCTTCAGGTACTTCCAATTTCTCTCTTTTGATTTCTCGATCAATACCTTTGAATGCGTGTATTTGTAATGTGTATCTTTTTCCGATTGATCCTTGTAATAATCCTAATTTTCCAAGTTATTTAAGTTTTTTTTTTTTTTCATTTTTGGTTGATTTTTCGATTGATTAGAATTTTGAAAATTGCAACTAGTTTGTTATAGTTGAATGATTTTAGCTTCAATTGCTGTGATCAAGGGCAGAGAACTAAAATTCATGTTTAAGCTTGACTTGTTGTAACTTAATTTAAATATATAGCTTTTCAAATGCAAACTCATCTTGTGTGTTTAAGCATATCAGTAACCAAATATGCTGAATTCAGAACCCCAATGGTTTGGTTGAGTGAAGTGTGACAATGTTTGTATGCACCATGTCGCCGGTTCAAGTTTCTGCTAGTACCTTTCGGGCCAGGTGAATGTAATTTTATTGGTAAACACTCACCGAAGCTTGAAGGCTTGTTTGAACTGATGGTATAAGGTGGAATGGAGTGAAATGAAATTGAATGCGATAACATCTATTTTTAAAAATCCAACTAAATTCGATTCCACCTTTTCCGGGGCCTTTTGGCTAAGATCAATGTAGTATATGTTCTTATCAGTTTTATAGTATTCCATTCCACTTCATTACACCATATATCACCATTCCAAAGGTGTTCCTTGGAGTGACATCTCATCACTCTAATTTTTTCCGTTTTAAAAAATATTACGAACTCATTGACCTCTGTTGTTATAACTTAAAATAAATATTATGATATGATGTATATCGAGAGTAAATTTTCTTTTGCTTGTGTTGGATTTTTTTAATATGCTGTTGTGCAGAGATTGTCTATGAATCCTTGTTTGTATTACAATGTTACCAATGGTTGTTTCTTTGTCTTCCTCCACAGGTAGAGGGAAAGACTGTAAAGGCACAGATTTGGGACACAGCCGGTCAGGAGCGGTACCGTGCAATTACCAGTGCCTATTACAGAGGAGCTGTTGGTGCTCTTCTTGTATATGACATTACTAAGAGGCAAACCTTTGACAATGTCAACAGGTGGCTGCGTGAATTAAGGGACCATGCGGATTCTAACATAGTGATCATGATGGCAGGAAATAAGTCTGATTTGAACCATCTTAGAGCTGTTTCGGAGGATGACGGTCAAGCATTGGCAGAGAAGGAAGGTCTCTCTTTTCTCGAAACATCTGCATTGGAAGCAACCAACATTGAGAAGGCATTCCAGACCATATTGACAGAGATTTATCATATTGTAAGCAAAAAAGCACTTGCAGCTCAGGAAGCAGCTGGTACCTCACTTCCTGGCCAAGGAACCACCATCAATGTTGCAGATTCATCTGCCAATACAAAGAGAGGCTGCTGTTCGACTTAA

Protein sequence

>MS.gene021166.t1

MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVNRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGQALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAGTSLPGQGTTINVADSSANTKRGCCST