AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068532


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068532.t1 MTR_1g068730 99.537 216 1 0 1 216 1 216 3.24e-161 444
MS.gene068532.t1 MTR_1g068740 99.074 216 2 0 1 216 1 216 1.36e-160 442
MS.gene068532.t1 MTR_1g115325 91.220 205 18 0 11 215 11 215 2.16e-140 391
MS.gene068532.t1 MTR_7g100020 94.175 206 12 0 11 216 11 216 1.86e-139 389
MS.gene068532.t1 MTR_4g063160 87.440 207 23 2 11 215 11 216 1.79e-132 371
MS.gene068532.t1 MTR_2g096550 75.926 216 48 3 1 215 1 213 1.18e-115 328
MS.gene068532.t1 MTR_1g068740 98.582 141 2 0 1 141 1 141 3.41e-100 289
MS.gene068532.t1 MTR_1g068730 97.872 141 3 0 1 141 1 141 4.91e-99 285
MS.gene068532.t1 MTR_7g081700 60.577 208 71 4 11 216 4 202 9.47e-86 252
MS.gene068532.t1 MTR_8g006970 59.420 207 72 4 13 216 20 217 1.09e-81 243
MS.gene068532.t1 MTR_8g006970 65.882 170 57 1 11 180 4 172 1.05e-78 234
MS.gene068532.t1 MTR_2g005500 53.555 211 86 4 8 215 2 203 1.80e-78 234
MS.gene068532.t1 MTR_4g099470 53.846 182 73 4 37 216 6 178 8.53e-66 201
MS.gene068532.t1 MTR_4g064897 42.056 214 118 3 7 216 4 215 1.06e-58 184
MS.gene068532.t1 MTR_6g021790 44.498 209 109 3 12 214 3 210 2.93e-58 183
MS.gene068532.t1 MTR_2g027660 44.976 209 107 3 12 213 3 210 3.88e-58 182
MS.gene068532.t1 MTR_3g069510 45.070 213 104 5 10 214 7 214 8.33e-58 182
MS.gene068532.t1 MTR_2g014990 45.413 218 106 5 7 216 5 217 1.11e-56 179
MS.gene068532.t1 MTR_2g005510 42.654 211 115 2 11 216 11 220 1.54e-56 179
MS.gene068532.t1 MTR_4g079350 44.954 218 107 5 7 216 5 217 2.64e-56 178
MS.gene068532.t1 MTR_7g103070 47.115 208 98 5 12 214 13 213 5.33e-56 177
MS.gene068532.t1 MTR_1g062760 48.558 208 94 6 12 214 11 210 7.27e-56 177
MS.gene068532.t1 MTR_8g031660 43.415 205 112 3 12 214 3 205 1.01e-55 176
MS.gene068532.t1 MTR_1g078200 42.453 212 111 2 13 214 12 222 1.90e-55 176
MS.gene068532.t1 MTR_4g088090 43.578 218 110 5 7 216 5 217 2.13e-55 176
MS.gene068532.t1 MTR_2g075950 50.292 171 84 1 7 177 5 174 1.01e-54 174
MS.gene068532.t1 MTR_3g086980 46.471 170 90 1 8 177 9 177 1.00e-53 172
MS.gene068532.t1 MTR_8g089985 41.667 216 109 4 13 216 15 225 1.62e-53 171
MS.gene068532.t1 MTR_1g029450 45.933 209 100 7 11 214 13 213 3.61e-53 170
MS.gene068532.t1 MTR_8g031870 48.485 165 84 1 14 178 5 168 4.40e-53 169
MS.gene068532.t1 MTR_7g051940 43.627 204 111 3 14 214 12 214 4.43e-53 170
MS.gene068532.t1 MTR_2g083860 48.538 171 87 1 7 177 5 174 5.52e-53 170
MS.gene068532.t1 MTR_8g093740 44.811 212 103 8 8 214 6 208 8.56e-52 166
MS.gene068532.t1 MTR_8g031680 41.905 210 112 5 12 214 3 209 1.18e-51 166
MS.gene068532.t1 MTR_2g090865 42.056 214 110 4 11 216 7 214 1.67e-51 166
MS.gene068532.t1 MTR_1g090717 44.240 217 112 6 1 214 1 211 2.06e-51 166
MS.gene068532.t1 MTR_3g096350 44.976 209 101 7 11 214 8 207 2.86e-51 165
MS.gene068532.t1 MTR_8g027220 46.061 165 88 1 13 177 24 187 2.20e-50 163
MS.gene068532.t1 MTR_1g052475 39.720 214 115 4 13 215 13 223 7.16e-50 162
MS.gene068532.t1 MTR_8g036220 42.439 205 112 3 13 213 14 216 9.50e-50 162
MS.gene068532.t1 MTR_7g405790 40.097 207 117 4 14 214 14 219 1.43e-49 161
MS.gene068532.t1 MTR_8g031830 48.718 156 79 1 14 169 5 159 4.98e-49 159
MS.gene068532.t1 MTR_6g079550 40.291 206 118 2 13 214 10 214 7.95e-49 159
MS.gene068532.t1 MTR_0262s0050 44.848 165 90 1 13 177 13 176 4.68e-47 155
MS.gene068532.t1 MTR_3g064390 38.693 199 110 4 17 214 12 199 4.80e-46 151
MS.gene068532.t1 MTR_8g103550 42.697 178 97 2 8 185 2 174 4.99e-46 151
MS.gene068532.t1 MTR_1g094220 44.242 165 90 2 16 179 32 195 4.16e-45 149
MS.gene068532.t1 MTR_5g076590 37.688 199 112 4 17 214 12 199 7.28e-45 148
MS.gene068532.t1 MTR_8g107070 49.068 161 81 1 13 173 12 171 2.67e-44 149
MS.gene068532.t1 MTR_2g005500 38.863 211 77 5 8 215 2 163 3.20e-44 145
MS.gene068532.t1 MTR_1g094220 45.283 159 85 2 16 173 32 189 7.94e-44 146
MS.gene068532.t1 MTR_1g094220 45.513 156 83 2 16 170 32 186 2.16e-43 145
MS.gene068532.t1 MTR_1g094220 45.513 156 83 2 16 170 32 186 3.39e-43 145
MS.gene068532.t1 MTR_7g117910 37.089 213 116 4 7 213 12 212 2.20e-42 142
MS.gene068532.t1 MTR_2g102060 40.860 186 104 3 17 201 12 192 3.02e-41 139
MS.gene068532.t1 MTR_3g096350 52.846 123 55 3 11 131 8 129 8.11e-41 136
MS.gene068532.t1 MTR_8g090215 43.038 158 89 1 17 174 11 167 9.96e-41 138
MS.gene068532.t1 MTR_4g069850 39.409 203 109 7 5 198 2 199 1.01e-40 138
MS.gene068532.t1 MTR_3g096350 51.938 129 59 3 11 137 8 135 1.46e-40 136
MS.gene068532.t1 MTR_3g087160 37.563 197 120 2 17 213 11 204 3.34e-39 134
MS.gene068532.t1 MTR_5g013900 37.143 210 125 4 5 214 3 205 9.06e-39 133
MS.gene068532.t1 MTR_8g093740 48.062 129 64 3 44 170 8 135 2.48e-38 131
MS.gene068532.t1 MTR_7g103070 45.912 159 74 5 61 214 6 157 4.62e-38 129
MS.gene068532.t1 MTR_4g098950 39.412 170 98 2 5 174 3 167 7.78e-38 130
MS.gene068532.t1 MTR_8g092020 39.521 167 95 2 15 175 12 178 1.80e-36 127
MS.gene068532.t1 MTR_2g101890 36.098 205 120 5 15 213 10 209 2.13e-36 127
MS.gene068532.t1 MTR_4g012940 36.893 206 118 5 15 214 8 207 2.48e-36 127
MS.gene068532.t1 MTR_1g097420 38.922 167 96 2 15 175 8 174 5.09e-35 123
MS.gene068532.t1 MTR_6g039490 35.533 197 121 3 15 205 8 204 5.94e-34 121
MS.gene068532.t1 MTR_3g064390 40.496 121 72 0 17 137 12 132 2.55e-31 112
MS.gene068532.t1 MTR_1g097420 33.505 194 96 3 15 175 8 201 8.44e-29 108
MS.gene068532.t1 MTR_4g088055 34.132 167 97 5 15 170 6 170 1.02e-26 101
MS.gene068532.t1 MTR_4g073250 33.511 188 112 6 15 191 6 191 6.42e-26 99.8
MS.gene068532.t1 MTR_2g090875 33.533 167 98 5 15 170 6 170 6.68e-26 99.8
MS.gene068532.t1 MTR_1g059590 40.588 170 90 4 10 179 393 551 3.39e-25 102
MS.gene068532.t1 MTR_1g059590 40.588 170 90 4 10 179 426 584 3.54e-25 102
MS.gene068532.t1 MTR_3g078260 32.934 167 99 5 15 170 8 172 6.98e-25 97.4
MS.gene068532.t1 MTR_3g107707 28.866 194 129 5 3 192 2 190 5.24e-24 95.5
MS.gene068532.t1 MTR_3g107713 28.866 194 129 5 3 192 2 190 5.47e-24 95.5
MS.gene068532.t1 MTR_3g107717 28.866 194 129 5 3 192 2 190 6.61e-24 95.1
MS.gene068532.t1 MTR_8g075240 32.934 167 99 6 15 170 6 170 1.65e-23 93.6
MS.gene068532.t1 MTR_6g087980 31.737 167 101 5 15 170 6 170 2.43e-23 93.2
MS.gene068532.t1 MTR_5g022600 32.934 167 99 6 15 170 6 170 4.55e-23 92.4
MS.gene068532.t1 MTR_8g031810 40.952 105 48 1 14 118 5 95 4.47e-22 86.7
MS.gene068532.t1 MTR_3g078260 34.483 116 73 3 15 129 8 121 1.40e-18 79.3
MS.gene068532.t1 MTR_4g113620 27.778 162 104 4 16 177 14 162 8.25e-18 79.0
MS.gene068532.t1 MTR_1452s0010 47.143 70 37 0 40 109 6 75 1.36e-17 75.5
MS.gene068532.t1 MTR_1686s0010 40.000 70 42 0 40 109 6 75 7.16e-14 65.1
MS.gene068532.t1 MTR_5g092060 26.190 168 114 4 10 170 98 262 4.60e-13 67.0
MS.gene068532.t1 MTR_2g078000 50.000 46 23 0 76 121 46 91 4.37e-12 60.8
MS.gene068532.t1 MTR_5g078090 31.707 164 93 6 16 170 20 173 6.49e-12 62.4
MS.gene068532.t1 MTR_1g069245 39.744 78 46 1 44 121 122 198 1.24e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068532.t1 AT3G53610 89.806 206 21 0 11 216 11 216 3.45e-141 393
MS.gene068532.t1 AT3G53610 89.806 206 21 0 11 216 11 216 3.45e-141 393
MS.gene068532.t1 AT3G53610 89.806 206 21 0 11 216 11 216 3.45e-141 393
MS.gene068532.t1 AT5G59840 90.291 206 20 0 11 216 11 216 2.06e-140 391
MS.gene068532.t1 AT3G46060 89.320 206 22 0 11 216 11 216 9.77e-140 389
MS.gene068532.t1 AT3G46060 89.320 206 22 0 11 216 11 216 9.77e-140 389
MS.gene068532.t1 AT3G46060 89.320 206 22 0 11 216 11 216 9.77e-140 389
MS.gene068532.t1 AT5G03520 84.579 214 32 1 1 214 1 213 1.03e-127 359
MS.gene068532.t1 AT3G09900 84.186 215 33 1 1 214 1 215 2.58e-127 358
MS.gene068532.t1 AT5G03520 82.424 165 28 1 50 214 40 203 5.03e-100 289
MS.gene068532.t1 AT1G02130 59.330 209 73 4 11 216 4 203 9.45e-87 255
MS.gene068532.t1 AT4G17530 58.654 208 75 4 11 216 4 202 7.09e-83 245
MS.gene068532.t1 AT5G47200 58.654 208 75 4 11 216 4 202 1.68e-82 244
MS.gene068532.t1 AT3G11730 56.190 210 80 4 10 215 3 204 1.02e-79 237
MS.gene068532.t1 AT4G35860 47.143 210 104 3 12 215 3 211 2.47e-63 196
MS.gene068532.t1 AT4G17160 46.602 206 105 3 12 215 3 205 1.87e-62 193
MS.gene068532.t1 AT4G17170 45.972 211 105 4 12 215 3 211 8.22e-61 189
MS.gene068532.t1 AT1G09630 43.458 214 116 2 7 216 4 216 7.03e-60 187
MS.gene068532.t1 AT3G07410 45.411 207 107 3 13 214 10 215 2.08e-57 181
MS.gene068532.t1 AT1G07410 42.056 214 117 3 7 216 4 214 2.09e-57 181
MS.gene068532.t1 AT4G18430 43.981 216 108 4 7 214 5 215 3.70e-57 180
MS.gene068532.t1 AT5G59150 48.538 171 87 1 7 177 4 173 7.03e-57 179
MS.gene068532.t1 AT1G16920 49.708 171 85 1 7 177 5 174 1.91e-56 178
MS.gene068532.t1 AT3G46830 49.123 171 86 1 7 177 4 173 4.92e-56 177
MS.gene068532.t1 AT3G46830 49.123 171 86 1 7 177 4 173 4.92e-56 177
MS.gene068532.t1 AT4G39990 44.340 212 107 4 13 216 15 223 4.95e-56 177
MS.gene068532.t1 AT2G43130 42.157 204 115 2 13 214 10 212 3.21e-55 175
MS.gene068532.t1 AT5G45750 43.192 213 113 4 7 214 5 214 1.13e-54 174
MS.gene068532.t1 AT1G28550 44.240 217 111 4 7 216 5 218 1.46e-54 174
MS.gene068532.t1 AT5G60860 43.056 216 110 4 7 214 5 215 1.78e-54 173
MS.gene068532.t1 AT1G01200 46.893 177 94 0 13 189 26 202 4.23e-54 173
MS.gene068532.t1 AT3G15060 43.946 223 112 5 1 216 1 217 5.04e-54 172
MS.gene068532.t1 AT1G05810 42.857 210 112 4 13 216 10 217 8.37e-54 172
MS.gene068532.t1 AT5G47520 42.991 214 108 4 13 216 12 221 9.06e-54 172
MS.gene068532.t1 AT4G18800 43.602 211 113 3 7 214 5 212 1.07e-53 171
MS.gene068532.t1 AT1G05810 42.857 210 112 4 13 216 56 263 2.08e-53 172
MS.gene068532.t1 AT2G33870 42.326 215 118 3 7 216 5 218 3.22e-53 170
MS.gene068532.t1 AT5G65270 40.845 213 116 4 13 216 15 226 9.95e-53 169
MS.gene068532.t1 AT2G31680 47.879 165 85 1 13 177 10 173 2.42e-52 168
MS.gene068532.t1 AT1G06400 47.399 173 90 1 7 179 5 176 2.49e-52 168
MS.gene068532.t1 AT5G47960 41.232 211 116 3 13 216 13 222 5.22e-52 167
MS.gene068532.t1 AT5G03530 45.755 212 102 7 8 214 6 209 6.44e-52 167
MS.gene068532.t1 AT5G03530 45.755 212 102 7 8 214 6 209 6.44e-52 167
MS.gene068532.t1 AT1G73640 46.114 193 99 2 13 201 11 202 1.92e-51 166
MS.gene068532.t1 AT1G43890 50.299 167 79 4 6 170 4 168 3.56e-51 165
MS.gene068532.t1 AT1G43890 50.299 167 79 4 6 170 4 168 3.56e-51 165
MS.gene068532.t1 AT1G43890 50.299 167 79 4 6 170 4 168 3.56e-51 165
MS.gene068532.t1 AT1G18200 49.123 171 86 1 13 183 11 180 1.19e-50 164
MS.gene068532.t1 AT3G12160 41.148 209 116 3 13 215 13 220 2.26e-50 163
MS.gene068532.t1 AT3G54840 44.382 178 94 3 3 179 24 197 5.09e-48 156
MS.gene068532.t1 AT3G54840 46.154 169 86 3 3 170 24 188 1.86e-47 155
MS.gene068532.t1 AT3G54840 45.399 163 87 2 18 179 2 163 8.74e-47 152
MS.gene068532.t1 AT4G19640 38.693 199 112 4 17 215 12 200 2.57e-44 147
MS.gene068532.t1 AT3G09910 45.946 185 96 4 8 190 6 188 3.24e-44 147
MS.gene068532.t1 AT3G09910 45.946 185 96 4 8 190 6 188 3.24e-44 147
MS.gene068532.t1 AT4G35860 44.848 165 84 3 57 215 2 165 1.48e-43 144
MS.gene068532.t1 AT3G09910 47.701 174 87 4 8 179 6 177 5.39e-43 144
MS.gene068532.t1 AT3G09910 47.701 174 87 4 8 179 6 177 5.39e-43 144
MS.gene068532.t1 AT3G09910 47.701 174 87 4 8 179 6 177 5.39e-43 144
MS.gene068532.t1 AT5G45130 36.181 199 117 4 17 215 12 200 2.03e-41 139
MS.gene068532.t1 AT3G18820 38.614 202 113 5 5 200 2 198 2.93e-41 139
MS.gene068532.t1 AT4G39890 43.396 159 88 2 17 174 11 168 1.51e-40 138
MS.gene068532.t1 AT2G22290 37.879 198 120 2 17 214 11 205 1.87e-40 137
MS.gene068532.t1 AT5G45130 35.533 197 117 4 19 215 22 208 1.12e-39 135
MS.gene068532.t1 AT5G10260 37.688 199 121 3 17 215 11 206 1.13e-38 133
MS.gene068532.t1 AT1G52280 38.537 205 114 5 15 213 8 206 1.41e-38 132
MS.gene068532.t1 AT4G09720 38.974 195 111 3 15 201 8 202 2.77e-38 132
MS.gene068532.t1 AT1G49300 35.814 215 122 6 5 213 2 206 6.15e-38 131
MS.gene068532.t1 AT1G49300 35.814 215 122 6 5 213 2 206 6.15e-38 131
MS.gene068532.t1 AT1G22740 38.579 197 113 4 15 205 8 202 7.58e-38 130
MS.gene068532.t1 AT2G44610 35.714 210 129 3 5 214 3 206 1.02e-37 130
MS.gene068532.t1 AT5G64990 37.563 197 122 1 17 213 9 204 1.87e-37 129
MS.gene068532.t1 AT5G59150 47.934 121 62 1 57 177 3 122 2.72e-37 128
MS.gene068532.t1 AT2G21880 37.019 208 109 4 15 205 9 211 4.67e-37 129
MS.gene068532.t1 AT3G16100 41.667 168 92 2 15 176 8 175 4.97e-37 129
MS.gene068532.t1 AT4G09720 38.500 200 110 4 15 201 8 207 2.05e-36 127
MS.gene068532.t1 AT4G09720 35.922 206 113 3 15 201 8 213 4.76e-35 124
MS.gene068532.t1 AT5G64990 36.275 204 122 2 17 213 9 211 1.34e-34 122
MS.gene068532.t1 AT5G39620 37.870 169 93 3 16 175 6 171 2.40e-33 119
MS.gene068532.t1 AT4G19640 39.669 121 73 0 17 137 12 132 2.41e-30 109
MS.gene068532.t1 AT4G19640 39.669 121 73 0 17 137 12 132 1.36e-29 109
MS.gene068532.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.52e-29 107
MS.gene068532.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.52e-29 107
MS.gene068532.t1 AT4G09720 39.157 166 93 3 44 201 3 168 3.52e-29 107
MS.gene068532.t1 AT2G21880 36.612 183 94 4 40 205 9 186 4.90e-29 107
MS.gene068532.t1 AT2G21880 36.612 183 94 4 40 205 9 186 4.90e-29 107
MS.gene068532.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.02e-27 103
MS.gene068532.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.02e-27 103
MS.gene068532.t1 AT4G35020 36.527 167 93 6 15 170 6 170 3.02e-27 103
MS.gene068532.t1 AT2G21880 33.173 208 109 5 15 205 9 203 3.10e-27 103
MS.gene068532.t1 AT2G44690 33.533 167 98 5 15 170 18 182 2.27e-26 101
MS.gene068532.t1 AT3G48040 33.533 167 98 5 15 170 8 172 4.97e-26 100
MS.gene068532.t1 AT5G62880 32.402 179 108 5 15 182 8 184 1.44e-25 99.4
MS.gene068532.t1 AT5G45970 31.737 167 101 5 15 170 6 170 1.68e-25 99.0
MS.gene068532.t1 AT1G20090 34.731 167 96 6 15 170 5 169 5.91e-25 97.4
MS.gene068532.t1 AT3G51300 32.934 167 99 6 15 170 6 170 6.07e-25 97.4
MS.gene068532.t1 AT1G75840 34.132 167 97 6 15 170 6 170 8.96e-25 96.7
MS.gene068532.t1 AT5G55190 28.972 214 140 6 3 209 2 210 1.50e-24 97.1
MS.gene068532.t1 AT5G55080 32.099 162 106 3 16 177 14 171 1.78e-24 96.7
MS.gene068532.t1 AT2G17800 33.533 167 98 6 15 170 6 170 2.91e-24 95.5
MS.gene068532.t1 AT2G17800 33.533 167 98 6 15 170 6 170 2.91e-24 95.5
MS.gene068532.t1 AT5G20010 28.037 214 144 6 3 212 2 209 3.31e-24 95.9
MS.gene068532.t1 AT4G28950 32.121 165 101 5 15 170 6 168 6.65e-24 94.7
MS.gene068532.t1 AT5G20020 28.866 194 129 5 3 192 2 190 1.01e-23 94.7
MS.gene068532.t1 AT3G48040 32.704 159 94 5 15 162 8 164 2.09e-23 92.8
MS.gene068532.t1 AT4G35950 32.934 167 99 6 15 170 6 170 2.50e-23 93.2
MS.gene068532.t1 AT5G62880 32.704 159 94 5 15 162 8 164 2.53e-22 90.1
MS.gene068532.t1 AT4G35020 37.069 116 70 3 15 129 6 119 2.72e-19 81.3
MS.gene068532.t1 AT4G35020 37.069 116 70 3 15 129 6 119 2.72e-19 81.3
MS.gene068532.t1 AT5G46025 34.314 102 65 2 77 177 6 106 3.04e-15 69.7
MS.gene068532.t1 AT3G51290 31.469 143 85 6 44 175 636 776 8.12e-13 67.4
MS.gene068532.t1 AT5G37680 28.049 164 99 5 16 170 20 173 2.84e-12 63.2
MS.gene068532.t1 AT5G67560 31.707 164 93 6 16 170 20 173 1.07e-11 61.6
MS.gene068532.t1 AT3G49870 29.167 168 112 4 16 180 1 164 1.25e-11 61.2
MS.gene068532.t1 AT2G15310 27.338 139 89 6 16 153 18 145 3.16e-11 60.8
MS.gene068532.t1 AT3G49870 29.167 168 112 4 16 180 20 183 4.29e-11 60.1

Find 48 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGAATCAAGTTGCAAATA+TGG 0.255433 1.1:-50159992 MS.gene068532:CDS
TTAGCATTGATTTCAAAATA+AGG 0.283837 1.1:-50160034 MS.gene068532:intron
GTTGGTTAATCTTGAGTGTC+TGG 0.301047 1.1:+50154885 None:intergenic
TAATCGGATCGAGCTCTTGC+AGG 0.360612 1.1:+50162275 None:intergenic
TCGCTTACCATCAAGCTCTA+TGG 0.377596 1.1:+50160010 None:intergenic
TTGGTTAATCTTGAGTGTCT+GGG 0.416091 1.1:+50154886 None:intergenic
CGGTTTCGAACCATTACAAC+TGG 0.420732 1.1:-50159951 MS.gene068532:intron
CTTGATTAGGTAATCGTAAT+CGG 0.424837 1.1:+50162259 None:intergenic
CATCTGAGAAACGTAATAGA+AGG 0.443048 1.1:+50160194 None:intergenic
CTTCTATTACGTTTCTCAGA+TGG 0.443228 1.1:-50160193 MS.gene068532:CDS
CGATGAGGAGAAGCTTGATT+AGG 0.449067 1.1:+50162246 None:intergenic
CCGACATGGATGAAAGCAAA+AGG 0.450345 1.1:-50155490 MS.gene068532:CDS
AACTTCAAAGGGTCAAGCTC+TGG 0.455648 1.1:-50155354 MS.gene068532:CDS
GCGAATCAAGTTGCAAATAT+GGG 0.458264 1.1:-50159991 MS.gene068532:CDS
GCTTATTACCGTGGAGCAAT+GGG 0.460469 1.1:-50155863 MS.gene068532:CDS
CAATGTCAACAAAATATTAG+TGG 0.483464 1.1:-50155522 MS.gene068532:CDS
ATAAGGACCATAGAGCTTGA+TGG 0.484066 1.1:-50160017 MS.gene068532:CDS
AATGTCAACAAAATATTAGT+GGG 0.485156 1.1:-50155521 MS.gene068532:CDS
AGAGCTTGACCCTTTGAAGT+TGG 0.487525 1.1:+50155356 None:intergenic
AGCTTATTACCGTGGAGCAA+TGG 0.491934 1.1:-50155864 MS.gene068532:CDS
GCAGAGCCAAGTCCCTGGTC+TGG 0.495657 1.1:+50154863 None:intergenic
TTAGGCTGTTCCAACTTCAA+AGG 0.500392 1.1:-50155366 MS.gene068532:intron
CTGAAACTAACCAGTTGTAA+TGG 0.502216 1.1:+50159941 None:intergenic
TAGGCTGTTCCAACTTCAAA+GGG 0.502333 1.1:-50155365 MS.gene068532:CDS
AGCCAAGTCCCTGGTCTGGT+TGG 0.506337 1.1:+50154867 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 1.1:-50154876 MS.gene068532:CDS
CAAGCTCTGGCAGATGAATA+CGG 0.517609 1.1:-50155341 MS.gene068532:CDS
CAAAATATTAGTGGGGAACA+AGG 0.518907 1.1:-50155513 MS.gene068532:CDS
AACCAACCAGACCAGGGACT+TGG 0.519310 1.1:-50154869 MS.gene068532:CDS
CTTGAGCAGAGCCAAGTCCC+TGG 0.557826 1.1:+50154858 None:intergenic
CGACATGGATGAAAGCAAAA+GGG 0.563915 1.1:-50155489 MS.gene068532:intron
CTAATCAAGCTTCTCCTCAT+CGG 0.565419 1.1:-50162245 MS.gene068532:CDS
TTGCAAATATGGGACACGGC+TGG 0.578666 1.1:-50159981 MS.gene068532:CDS
AACTAATATGAATGTAGATG+AGG 0.592652 1.1:-50155209 MS.gene068532:CDS
TCACAAACGTCTTCTTGCTG+TGG 0.593063 1.1:-50154833 MS.gene068532:CDS
TGGTTAATCTTGAGTGTCTG+GGG 0.601058 1.1:+50154887 None:intergenic
CTTCTCCTCATCGGTGATAG+CGG 0.601359 1.1:-50162236 MS.gene068532:intron
AGTGGGGAACAAGGCCGACA+TGG 0.603133 1.1:-50155504 MS.gene068532:CDS
CAAGTTGCAAATATGGGACA+CGG 0.605581 1.1:-50159985 MS.gene068532:CDS
TATTGGGCAGCTTATTACCG+TGG 0.608798 1.1:-50155872 MS.gene068532:intron
TCGGATCGAGCTCTTGCAGG+TGG 0.611640 1.1:+50162278 None:intergenic
GCAAAATACCCATTGCTCCA+CGG 0.620774 1.1:+50155855 None:intergenic
ACTGTTAAAAGATGACTCAT+CGG 0.623062 1.1:+50155817 None:intergenic
AAGATTAACCAACCAGACCA+GGG 0.664294 1.1:-50154875 MS.gene068532:CDS
GGGACACGGCTGGTCAAGAG+CGG 0.673808 1.1:-50159971 MS.gene068532:CDS
ATGTCAACAAAATATTAGTG+GGG 0.680013 1.1:-50155520 MS.gene068532:CDS
AGAAAGCGACTCAAAGACTG+AGG 0.689584 1.1:-50155146 MS.gene068532:intron
ACGAACCGCTATCACCGATG+AGG 0.719307 1.1:+50162231 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.1 gene 50154826 50162309 50154826 ID=MS.gene068532
chr1.1 mRNA 50154826 50162309 50154826 ID=MS.gene068532.t1;Parent=MS.gene068532
chr1.1 exon 50162237 50162309 50162237 ID=MS.gene068532.t1.exon1;Parent=MS.gene068532.t1
chr1.1 CDS 50162237 50162309 50162237 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50160160 50160232 50160160 ID=MS.gene068532.t1.exon2;Parent=MS.gene068532.t1
chr1.1 CDS 50160160 50160232 50160160 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50159952 50160052 50159952 ID=MS.gene068532.t1.exon3;Parent=MS.gene068532.t1
chr1.1 CDS 50159952 50160052 50159952 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50155819 50155884 50155819 ID=MS.gene068532.t1.exon4;Parent=MS.gene068532.t1
chr1.1 CDS 50155819 50155884 50155819 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50155490 50155587 50155490 ID=MS.gene068532.t1.exon5;Parent=MS.gene068532.t1
chr1.1 CDS 50155490 50155587 50155490 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50155322 50155384 50155322 ID=MS.gene068532.t1.exon6;Parent=MS.gene068532.t1
chr1.1 CDS 50155322 50155384 50155322 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50155147 50155239 50155147 ID=MS.gene068532.t1.exon7;Parent=MS.gene068532.t1
chr1.1 CDS 50155147 50155239 50155147 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
chr1.1 exon 50154826 50154909 50154826 ID=MS.gene068532.t1.exon8;Parent=MS.gene068532.t1
chr1.1 CDS 50154826 50154909 50154826 ID=cds.MS.gene068532.t1;Parent=MS.gene068532.t1
Gene Sequence

>MS.gene068532

ATGGCTGCTCCACCTGCAAGAGCTCGATCCGATTACGATTACCTAATCAAGCTTCTCCTCATCGGTGATAGCGGTTCGTACTTTTTCAATTCTTTTTCTTTTCGCACTTTAGATTTTAATTCTGCTAAATATCTCATTAGGTTTTATTATTTTTAGCGGTAATTCGATTCTTAGTTGCGTAATCATACAAGTTTACTATAACAAATGGAGGCAGTAACTTATTTTTGTCAATGATAAAGTAAAAGGGTTACAACTAATTATTAAGGCTTAACTCAACTGATCATGTGTAAGAAAATCAGTTATTTATTAATCAAATGTGACCTATTTGGATAAACAACTTAATTACACTTGTTTATGTTTGTATAAGCTATTTCTATAACAAAATATATAATAAAATTAAACGGCTTTCATATAAAATAAGGTGGTTTGGGGGTAAGGGATGTGAGAGTGGTCAACTTGAGTCTTTTGGCAAAATGGCGTTGGCGTATTCTACAACATGATTCTCCTTTGTGGAAAGAAGTCCTTGTCAAAAAGTTTGATCGGAGTGGAGTCACTTGGCCGAGAAGTGCTTCTGTATGGTGGAGAGATTTAACTTCATTGGAGTATTCGGGTGGAGGAGATTGGTTCAAAAGGGAAGTATTTAAGAAAGTTTGTGATCTTTTCCCGCGGTTGCTTGCTATTACAGATAGAAAGGATGCGAAGTTGAGTGAGGTTTGTGTTAGAAATGGGGAAGAGTGGAATTGGACGTGGTTGTGGAGAAGGTTGTTGTTTGTATGGGATGAGAGTTTACTTGAGCAATTATTGATGTTGTTGAATGATTTGGTACCAAATACCGAGAGAGATAGTTGGGGGTAGAGACTGGAAGGTGGAGGTGTGTTCTCAGTAAAATCAACTTATGACTTGTTGGAGGGGATTTTTGTGTTGGAAAATGATCTAGGTGAATTGGAAAAAATGGTTTTTGGAGGCCTTTGGAAAAGTCTGGCACCTTCAAAAGAGTGGCTTTCTCTTGGAAAATGCTCCTACATAGATTTCCAGCCCGGAATAATTTGTGGAAAAGGCATACTATTGCTCCCGAAGGTGTCTTTTGTGGGAATGATGAGGAATCTTCTATCCACCTTTTTCTTCATTGTTATTTTGCTGCTCAAGTGTGGGATAAGATTTTGAGATGGATAGGTGTGGAATTTATTATACCCCCAAACCATTTGTTCAAATTGAATGTTTGATAGGATGTGCTCAAAATAAAAAGTGGAAAAAAAGGGTTTTGGCTTATTTGGCACACTACCGTTTGGGTGATTTGGAGTACGAGAAATAGGAAGATTTTCAAGAATCGAGATTTTGAGGTTGATGCAATGGTGGAGGAAATCAAAGTCCTCTTATGGAAGCGGAGCTTGAGTAGATTGGAAGCATCACCATGCATGTTCTATGAATGAAATTGGTGTACGGGAGATTGCTTTGCTAGGTAGGAAGTTGGGATTGCTGTGCATGGTTCTTTTTCAGTGCTGTTTTGGGGTTGCTGGGCGGTGGTGTACGTGGCTGTCGATCGGTGTGTATTGGGGGTAACCAAATACTGGGTGGTTGTTTTGATGTGTTTTCCTCTTTTTTGGACGGGGTCAGGGGTGTGTTTTTTGTCCCTGTTTGTTGCGTTGTTCATGAGGTGCTCCTGCGGGTTCTCTGTTTTGTTTGTTGTTCCAGTATCAGTTTAGGGTACTGGATTGTGGCTTTGTTTAAGTTGTATCTGCTCTTTTTGCCCGGTCATCATGGCGACTTGTGATGGTACGGCGTGCGTAATAAAATTTGTTGCTTAAAAAAAACGGTTTGCATTTAAGCCGTACTAGGTTTTCATATAGCTATCCTGGGGAGCTTATGGAAATAAGTTGAAAACAAATTACGGGCATGCTAAAAGCTATTTCCACAAGCTCTCACAAAAATCATCATAAGTGCGAATGTCTGCAAATAAGCTAATCCAAACATGCCTTTTTATCTCCTCTCTCTCCTTTTTATTATTAGTAGTGTATTGAATGTATCTTATCTTATTGGGTTTTGTTTGTATATTACATTCTTTTTTTCACGTTGGCAGGTGTGGGTAAAAGTTGCCTTCTATTACGTTTCTCAGATGGTTCATTCACAACTAGTTTTATCACAACCATCGGGTAGGTTCTCTTTGTGTGAACTTGCTTATTTTATGTTTTTCGTTGTTATTCTTGTCTTTCTTGAGGAGATGGCCCTGTACTTACTAGAATGGGTTATTTTTCTTTAGCATTGATTTCAAAATAAGGACCATAGAGCTTGATGGTAAGCGAATCAAGTTGCAAATATGGGACACGGCTGGTCAAGAGCGGTTTCGAACCATTACAACTGGTTAGTTTCAGTTACTGAATTTATTTGTTTTGTTCTCTTTCCTTCCCAACATAACTAGAATAATAAGTGAGAGCTTAATTGTGGTTCTTTATATTCAACTTATGTACACTTCTTATGCAACATGTGCTTGTCATGATATTAATCAGTTGCTACTTATTTATTGCTCCTTCTATTCTTGCACATTGGATAGGAACCACTATAAATATTAAATAGTATATTTTGATATTATTTGTTGATTGAGGCAAATAGATTTCCCTTTCTTCTCTAACTTGCCAAACCATTTTTTATTGAAAACCATCCTGTTTTGAATAAGATTTAAACTTCCATTTGCCAGATCAATGTATAAGGTACCTGATATGATTGGTGGCCTATTAATAGATCTTTTAAGATTGCTGACTGTTTGAGACGATATGCTTTTTTACTAGATTGTATGGGCTGGATCTCTTTATTAGATTGGTTTAGACTTTTATCTAAAAATTCTGAATATTATCAGACCTGTGAAGTAGTTGGATATCCGGTGTTGTACCCACTAATTATCACCTTACACGTGATTGAGGTTTAGTTCTACTGTATGAAGCTCGGATACTTGATACAACATGAACACAATATGACACATATATGGAAATTCTTGAAAACTGAAGATATTAGATGGCCTAAATTCATTTACACTAATTTGTGAAAAATTTACTTACTTTATTATTTTACAGAAATGCAATAATATTTGTAAAAAAACATTGATGTTTTTTTTATCAATATATAACTATGTTTATTTGCATATGATGATCACAAGTTCACAACTCACAAAAATACTTGTTTTTTTGAAACAACCAATGTTAGTATTGTTAGTTTTTTGTTGGGAGTGGGGATCGAATTCTCCATCTCCTTATCACTCGACTCCTTACAAAAGACACTTCTAATCATTGCAAAAAACCATAGAGGCATATTTTTACTCTTACCCATATCAATTATTTATTATTTTCCTTGTGACGTGTCATAAATGTATTATTTTTCCCTAACCACTGTCAAAATGTCACAAAGTACCACTGCTCCTATTTAAACTAAGTCTAGACCTATGAAGCATAGACTTTGACATACGGACACGACACACATTGAGACACGAGTAGTGTCCAAAATATAGGACACCGGGACACCTCATACTTGTGTATATTTTTATTTATGTGTATGCGTGTGTATATAATTGACTTAGCAAAATTCTAAATTAAGAATTTAGATTCATATGTTAACCTTCTAAAGATAAATTCATGTTAATGATATGACTCACAAAAAAGAATACTAATACTGTATTAGGAATATGCCTTATGCTGTTATAATTGCGTCAGAGGATCAATCCTCTTCTCTTCCTCCAGAATTCTGTTAGGACAGCTGTCCTAACCTAGGACAACTGACACTTGTGTTAGAGTTAGTTAGGATCTAGCTACTCTATAAATACTTGATCGTATCTCCTTTCAAAACTATCTAGAACTTTCCCTCTCTTTCTCTCATTTCTCTGAATCCTCTACTTCTAACACGGTATCTTAGAGCTTCTTTTCAATCTTTAGCCATGGCTATTGGCCACTCCTCCTACCTCTTCTCATGTCACTGATCGAGTTACTGCGGCAGCAGCACCAACAACATTCAAGCAAAAGATCTATCTTAAACTTGATGATAAACACTAGGCTAAAGTGCAACTTTGGCCCCCTATCTTTCAAAAAGTTGCGATTTTGGCCCCCTAAGTTTGAAAACTACAATTTTGGTCCCCTATGTTTTAGCCCCTTTGCATATTTGGTCCTTTTGACCAAGTCAACGCACCACGTGTGTAATTAATTAATTAAAAAAATAAAAAATCGAAAAAATCAATTTTTAAATTAAATAAATGAAAAAATAATAAAAAAATATTAAAAAATTCTGGAAAAATGAAAAATAATGAAAAAATAAATTTTTTTTCCAGATTTTAAATTAAATAAATCAAAAAAAATCCAGAAAATCAATTTTTAAATTAAATAAATGAAAAAATAATAATAAAAAATTTAAAAATAATGAAAAAATTCGAAAAAAAATGTCAAATTTTCCAGATTTTTTAAAAAATTCGAAAAAAATACGGAATTTTTTTTTAAAAAATCTGGAAAATTTGACATTATTTTTTTCGAATTTTTTTCAGAATTTTTTTCGAAATTTTTTCCATAATCTTTTACAAAATTTTCTAATGTTGAAAATTTGACATTCTAAAGGCGCAAGAAAACGAAAAAAGTATACACAAAAACACCGACGAGAATACAACTTGGCCACAAATTTGGTACATATTTCTTCTTTAGGGAAATGAATGTTTCCATGACATTACTTTTTCGAATAAGTGATTCTTGGAATTGTCCATGAATTTTTGTGAAATTTTTTTCGTTTTTTTAATCATTTTTATTAATATTTTTATTTTTCAAGAATTTATTTCATTTTTTTGTTTTTTAAATTTTTTTATTTTTTAATTATTTTTCATTTTTCCAGATTTTTTTAATATTTTTTCATTTTTCCAGAATTTTTTAAATTTTTTTATTATTTTTCATTTTTCCAGAATTTTTTAATATTTTTGTTCATTTATTTAATTTAAAAATTGATTTTTTCGATTTTTTATTTTTTTAATTAATTAATTACACACGTGGCATGCCACGTTTGCGTTGGTCAAAATTGACCAAAAGGACCAAATATGCTAAGGGGCTAAAACATAGGGGACCAAAATTGTAGTTTTCAAATTTAAGGGGCCAAAATCACAACTTTTTGAAAGATAGTGGGCCAAAGTTGCACTTTAGCCTAAAAACTATCTTCAATGAAAGCAACTAGTTAAAGGCGTTCGTTGAGGAAGTAACTTGGTGAAATACGCTGTTCTACAAAAATTTTTGAGTATTGATCCTCTGATACAATTATAACAGCATAAAGTATATTCCTAATAAACAAGACCAAGGGGAATCATTTATAAGGCAATCCTTATCTATATGACATAAGATAAGAATATAAATCATGTCTATTATAACAATTTAATCCTATGATAATGATCCTCACAAAAAATGATAAGACATCATTGTTTTAGTTCTCATAAAAAGGAAAAGATCTAATCTAGAATTAGAAGTTGTCTGAGACAAGTGTTTGGCCAAGAGCATGCGTCGGCACAGTCTTTGCTCGCGTGTTCAAGGCTTGTCTAATAGGTGTCTGTACCAGTTTTATTTATTTAATTGGACTATATTAAAAGGTGTCTGACATGTGTCCAAGGGATCTTCATCTTCCCATTATCATCATTATAATTTAATCCTATGATAATGATCCTCACAAAAAATGATAAGACATCATTGTTTTAGTTCTCATAAAAAGGAAAAGATCTAATCTAGAATTAGAAGTTGTCTGAGACAAGTGTTTGGCCAAGAGCATGCGTCGGCACAGTCTTTGCTCGCGTGTTCAAGGCTTGTCTAATAGGTGTCTGTACCAGTTTTATTTATTTAATTGGACTATATTAAAAGGTGTCTGACATGTGTCCAAGGGATCTTCATCTTCCCATTATCATCATCCAAAACAGCATAGCTTCTGAATTTAATTTGCCAATTCAAGAAGTTGGTAACCTTCGTCATCAAATGAATCACACACATCACTACTAATATCCCACAAATATCCCTCTCCCTCTTTCCATATCATCAAACATGAATAAAGTATCTACTCCAGTTATGCTCATAATTTGAGGGAGAACAAGGCTCAAGTTACTGGAGCTGTATGCCAAAGTGTTGAAGAGGCATCCCTTATTTATCTGTCAAATATTATCTTTTAAAATCTTAAAAAGGTGGAGGGTACTTTTTGGATACTGATCTAGGAGTATTATATGCATACGGGAATACGGCTATGACACCTATACTTTAGCAATTTTAGAGTATTATAGCGTTATAGGTTCTACTCTATATACTAATGTGATTATGTATTGCAAGATGTTGCTTGTTTGTCAATATCAGTGCATATTGTGATATTGATTGACAGCCGTCACTATTTCAAACACATATTTCTACTCTGATGATGTGTTCAATCTTTTTATTGGGCAGCTTATTACCGTGGAGCAATGGGTATTTTGCTTGTGTATGATGTCACCGATGAGTCATCTTTTAACAGTAAGTTCTTTTTCCACCTTCTGGTTTTAGTTTTGCGCCATTCCTCCTTTATTATTTCCTCCACATTCTAATCTTCTAATATGCTTGTTTCTTTAAATCCACACGAATCATTGGAACAAGTGTTTTTGTCGGCAAACTCTACTTTTCAACTGTGTACTTTGGGGAGATCCCAGTGCTTAAATTTGTATCAAGATGGAACTGACTTCTCTATTTGTTTCATCTCATATCCAGACATCAAAAATTGGATTCGCAACATTGAGCAGCATGCTTCTGACAATGTCAACAAAATATTAGTGGGGAACAAGGCCGACATGGATGAAAGCAAAAGGGTTTGCCTCACACACTTACTCTTTGTCCATCCTTTTGGTTTTCCATGTACACGTATATCCTGTGATTACTATGCTACACTTGATACTGGAAATTATTCTCCTTAGGCTGTTCCAACTTCAAAGGGTCAAGCTCTGGCAGATGAATACGGCATCAAATTTTTCGAAACTGTAAGCAGCACTTATTACTCTTGTTGGAAAAGCATTCCAAAACCGCTGTGCTGTTTCTAATTCCGAGATTATGTTTATGCAGAGTGCAAAAACTAATATGAATGTAGATGAGGTTTTCTTTTCAATAGCTCGGGACATCAAACAAAGACTTGCAGAAAGCGACTCAAAGACTGAGGTTTTTATTTCGACCTTTCTTTTGTTATATGATGGATTCATTATCTTGGAAGTTGCAACAGTTTATAATTGCATTATTTTTTGATTTATTTGAAGTTAATGCACGACGCTTCCTTGATATTGCTGGTTTTCTTTTTTAGACAACTGTTATGTTGCATGTTTGGTTGAATAAGAAAATCTATATCAGATTTAATTGCTTCATCATCTTCACGCTAAATTTTCATTTGGTTCTTTGCAGCCCCAGACACTCAAGATTAACCAACCAGACCAGGGACTTGGCTCTGCTCAAGCATCACAAACGTCTTCTTGCTGTGGTTCTTAG

Protein sequence

>MS.gene068532.t1

MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQRLAESDSKTEPQTLKINQPDQGLGSAQASQTSSCCGS