AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20024


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20024.t1 MTR_7g117910 82.895 228 23 2 1 228 1 212 4.68e-135 378
MS.gene20024.t1 MTR_8g027220 82.326 215 36 1 14 228 20 232 2.14e-131 369
MS.gene20024.t1 MTR_8g089985 65.403 211 70 2 15 223 12 221 6.13e-97 282
MS.gene20024.t1 MTR_3g086980 65.700 207 68 2 15 219 11 216 3.60e-96 280
MS.gene20024.t1 MTR_0262s0050 67.010 194 62 1 16 207 11 204 4.25e-91 267
MS.gene20024.t1 MTR_1g052475 64.286 196 67 1 15 207 10 205 1.31e-90 266
MS.gene20024.t1 MTR_2g005510 59.346 214 84 1 14 227 9 219 1.41e-88 261
MS.gene20024.t1 MTR_2g075950 54.630 216 94 1 12 227 5 216 2.88e-83 247
MS.gene20024.t1 MTR_2g014990 55.251 219 94 2 10 228 3 217 1.05e-82 246
MS.gene20024.t1 MTR_4g088090 54.795 219 95 2 10 228 3 217 2.89e-82 244
MS.gene20024.t1 MTR_4g064897 56.373 204 89 0 10 213 2 205 3.60e-82 244
MS.gene20024.t1 MTR_4g079350 53.881 219 97 2 10 228 3 217 1.38e-81 243
MS.gene20024.t1 MTR_3g069510 56.500 200 87 0 10 209 2 201 4.69e-81 241
MS.gene20024.t1 MTR_2g083860 59.669 181 73 0 12 192 5 185 8.67e-79 236
MS.gene20024.t1 MTR_2g090865 54.930 213 91 3 15 227 6 213 2.15e-78 234
MS.gene20024.t1 MTR_8g036220 51.327 226 105 2 5 226 1 225 1.33e-77 233
MS.gene20024.t1 MTR_1g078200 60.000 175 70 0 18 192 12 186 5.08e-75 226
MS.gene20024.t1 MTR_7g405790 51.923 208 97 1 19 226 14 218 6.90e-73 221
MS.gene20024.t1 MTR_7g051940 51.905 210 94 2 19 228 12 214 6.05e-71 216
MS.gene20024.t1 MTR_6g079550 48.198 222 103 2 10 227 2 215 4.40e-70 214
MS.gene20024.t1 MTR_8g107070 53.125 192 90 0 15 206 9 200 3.50e-65 203
MS.gene20024.t1 MTR_8g031870 52.147 163 78 0 19 181 5 167 7.48e-59 184
MS.gene20024.t1 MTR_8g031660 51.497 167 81 0 19 185 5 171 9.29e-58 182
MS.gene20024.t1 MTR_2g027660 47.514 181 95 0 19 199 5 185 1.09e-57 182
MS.gene20024.t1 MTR_8g031680 50.000 170 85 0 19 188 5 174 3.03e-56 178
MS.gene20024.t1 MTR_6g021790 50.000 164 82 0 18 181 4 167 9.37e-56 177
MS.gene20024.t1 MTR_2g005500 45.263 190 103 1 18 207 7 195 6.51e-55 174
MS.gene20024.t1 MTR_8g031830 49.701 167 83 1 19 184 5 171 8.64e-54 171
MS.gene20024.t1 MTR_8g006970 43.878 196 107 2 18 212 20 213 8.27e-53 169
MS.gene20024.t1 MTR_7g081700 43.077 195 109 1 18 212 6 198 8.95e-53 169
MS.gene20024.t1 MTR_1g068730 40.887 203 114 2 12 213 7 204 2.58e-51 166
MS.gene20024.t1 MTR_1g068740 40.887 203 114 2 12 213 7 204 5.40e-51 165
MS.gene20024.t1 MTR_8g006970 48.171 164 85 0 18 181 6 169 5.92e-51 164
MS.gene20024.t1 MTR_7g100020 41.146 192 107 2 18 208 13 199 5.82e-49 160
MS.gene20024.t1 MTR_1g115325 43.713 167 93 1 18 183 13 179 2.26e-48 158
MS.gene20024.t1 MTR_3g064390 42.945 163 93 0 22 184 12 174 7.26e-47 154
MS.gene20024.t1 MTR_5g076590 42.593 162 93 0 22 183 12 173 4.58e-46 152
MS.gene20024.t1 MTR_8g093740 42.188 192 105 4 8 197 1 188 5.97e-46 152
MS.gene20024.t1 MTR_1g094220 42.941 170 92 2 22 190 33 198 1.36e-45 150
MS.gene20024.t1 MTR_2g102060 39.326 178 107 1 12 189 3 179 5.58e-45 149
MS.gene20024.t1 MTR_2g096550 37.688 199 118 4 14 206 9 207 2.34e-44 148
MS.gene20024.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 4.11e-44 147
MS.gene20024.t1 MTR_8g103550 40.120 167 100 0 22 188 11 177 4.15e-44 147
MS.gene20024.t1 MTR_1g029450 40.513 195 113 3 16 208 13 206 5.01e-44 147
MS.gene20024.t1 MTR_3g096350 41.451 193 106 5 8 198 1 188 6.41e-44 147
MS.gene20024.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 8.36e-44 146
MS.gene20024.t1 MTR_4g099470 43.558 163 88 2 51 212 15 174 1.11e-43 145
MS.gene20024.t1 MTR_1g094220 44.156 154 85 1 22 174 33 186 1.60e-43 146
MS.gene20024.t1 MTR_4g063160 42.012 169 95 2 18 183 13 181 2.63e-43 145
MS.gene20024.t1 MTR_7g103070 45.062 162 87 2 18 177 14 175 3.05e-43 145
MS.gene20024.t1 MTR_1g062760 44.444 171 92 3 18 186 12 181 1.90e-42 143
MS.gene20024.t1 MTR_1g068730 44.444 135 75 0 9 143 4 138 5.95e-42 140
MS.gene20024.t1 MTR_1g068740 44.604 139 76 1 9 146 4 142 9.28e-42 140
MS.gene20024.t1 MTR_5g013900 39.490 157 95 0 21 177 10 166 2.92e-41 140
MS.gene20024.t1 MTR_4g098950 39.490 157 95 0 21 177 10 166 7.19e-41 139
MS.gene20024.t1 MTR_3g087160 37.580 157 98 0 21 177 10 166 3.55e-40 137
MS.gene20024.t1 MTR_8g090215 37.580 157 98 0 21 177 10 166 1.10e-39 135
MS.gene20024.t1 MTR_1g090717 43.678 174 95 3 18 188 13 186 4.78e-39 134
MS.gene20024.t1 MTR_3g096350 43.662 142 74 5 8 145 1 140 1.87e-35 123
MS.gene20024.t1 MTR_3g096350 46.617 133 67 4 8 138 1 131 2.50e-35 123
MS.gene20024.t1 MTR_3g064390 42.969 128 73 0 22 149 12 139 1.64e-34 121
MS.gene20024.t1 MTR_8g093740 43.243 148 79 3 51 196 10 154 1.80e-33 119
MS.gene20024.t1 MTR_8g092020 38.650 163 93 3 20 175 12 174 9.49e-33 118
MS.gene20024.t1 MTR_1g097420 38.037 163 94 3 20 175 8 170 7.03e-32 115
MS.gene20024.t1 MTR_4g069850 38.889 162 92 3 20 174 8 169 4.04e-31 114
MS.gene20024.t1 MTR_7g103070 45.763 118 62 2 62 177 2 119 2.86e-30 110
MS.gene20024.t1 MTR_2g101890 37.654 162 94 3 20 174 10 171 3.38e-30 111
MS.gene20024.t1 MTR_4g012940 37.654 162 94 3 20 174 8 169 7.55e-30 110
MS.gene20024.t1 MTR_6g039490 36.196 163 97 3 20 175 8 170 1.21e-27 105
MS.gene20024.t1 MTR_2g005500 33.158 190 86 2 18 207 7 155 1.99e-26 100
MS.gene20024.t1 MTR_1g097420 35.152 165 98 4 18 175 35 197 4.51e-26 101
MS.gene20024.t1 MTR_8g031810 43.269 104 45 1 19 122 5 94 6.08e-23 89.4
MS.gene20024.t1 MTR_3g107717 33.136 169 109 3 14 181 6 171 6.36e-23 92.8
MS.gene20024.t1 MTR_3g107713 33.136 169 109 3 14 181 6 171 6.64e-23 92.8
MS.gene20024.t1 MTR_3g107707 33.136 169 109 3 14 181 6 171 6.85e-23 92.8
MS.gene20024.t1 MTR_1g069245 47.368 95 46 2 33 127 109 199 5.03e-21 87.8
MS.gene20024.t1 MTR_5g022600 33.333 165 96 5 22 174 8 170 1.16e-20 86.3
MS.gene20024.t1 MTR_4g088055 36.364 121 74 3 22 141 8 126 1.13e-19 83.6
MS.gene20024.t1 MTR_8g075240 33.333 165 96 5 22 174 8 170 1.13e-19 83.6
MS.gene20024.t1 MTR_2g090875 31.515 165 99 5 22 174 8 170 2.52e-19 82.8
MS.gene20024.t1 MTR_4g073250 36.975 119 72 3 22 139 8 124 5.93e-19 81.6
MS.gene20024.t1 MTR_6g087980 37.190 121 73 3 22 141 8 126 1.02e-18 81.3
MS.gene20024.t1 MTR_2g078000 65.306 49 17 0 81 129 46 94 1.79e-18 78.2
MS.gene20024.t1 MTR_3g078260 33.333 165 96 5 22 174 10 172 4.66e-18 79.7
MS.gene20024.t1 MTR_1452s0010 46.377 69 37 0 50 118 11 79 5.16e-17 74.3
MS.gene20024.t1 MTR_3g078260 36.842 114 69 3 22 134 10 121 2.69e-16 73.6
MS.gene20024.t1 MTR_1g059590 32.934 167 105 3 23 189 398 557 9.13e-16 76.3
MS.gene20024.t1 MTR_1g059590 32.934 167 105 3 23 189 431 590 9.97e-16 75.9
MS.gene20024.t1 MTR_4g113620 30.994 171 104 6 13 181 4 162 1.09e-15 73.6
MS.gene20024.t1 MTR_1686s0010 35.714 84 54 0 48 131 9 92 7.39e-14 65.5
MS.gene20024.t1 MTR_8g099250 51.724 58 28 0 5 62 1 58 1.59e-13 63.9
MS.gene20024.t1 MTR_3g053480 49.180 61 31 0 5 65 1 61 1.83e-13 63.5
MS.gene20024.t1 MTR_2g078560 58.696 46 19 0 82 127 54 99 2.13e-13 68.6
MS.gene20024.t1 MTR_5g092060 29.193 161 104 3 21 174 105 262 1.52e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20024.t1 AT1G01200 69.038 239 61 5 1 228 1 237 5.90e-115 328
MS.gene20024.t1 AT5G65270 65.728 213 71 1 13 223 10 222 1.18e-101 294
MS.gene20024.t1 AT4G39990 66.337 202 67 1 16 217 13 213 3.86e-96 280
MS.gene20024.t1 AT3G12160 65.347 202 68 1 15 214 10 211 1.68e-94 276
MS.gene20024.t1 AT5G47960 63.721 215 71 3 15 226 10 220 2.27e-93 273
MS.gene20024.t1 AT1G09630 57.339 218 89 1 10 227 2 215 2.39e-90 265
MS.gene20024.t1 AT4G18800 55.556 216 89 2 12 227 5 213 1.57e-83 248
MS.gene20024.t1 AT5G45750 58.586 198 81 1 12 209 5 201 2.23e-82 245
MS.gene20024.t1 AT1G07410 57.500 200 84 1 10 209 2 200 1.16e-81 243
MS.gene20024.t1 AT5G60860 53.670 218 97 2 10 227 3 216 3.99e-81 242
MS.gene20024.t1 AT5G59150 63.128 179 66 0 10 188 2 180 5.91e-81 241
MS.gene20024.t1 AT1G16920 53.241 216 96 2 12 227 5 215 1.78e-80 240
MS.gene20024.t1 AT3G15060 52.752 218 99 2 10 227 3 216 2.32e-80 240
MS.gene20024.t1 AT4G18430 52.752 218 99 2 10 227 3 216 7.95e-80 238
MS.gene20024.t1 AT3G46830 62.921 178 66 0 11 188 3 180 1.26e-79 238
MS.gene20024.t1 AT3G46830 62.921 178 66 0 11 188 3 180 1.26e-79 238
MS.gene20024.t1 AT1G06400 57.071 198 84 1 12 209 5 201 2.08e-79 237
MS.gene20024.t1 AT1G28550 52.294 218 101 2 10 227 3 217 3.59e-79 237
MS.gene20024.t1 AT2G33870 50.463 216 104 2 12 227 5 217 4.57e-77 231
MS.gene20024.t1 AT5G47520 53.774 212 93 2 18 227 12 220 1.89e-75 228
MS.gene20024.t1 AT3G07410 51.364 220 100 3 7 226 2 214 2.11e-72 219
MS.gene20024.t1 AT1G05810 57.955 176 74 0 18 193 10 185 4.19e-72 219
MS.gene20024.t1 AT2G43130 55.978 184 78 1 11 194 6 186 8.34e-72 218
MS.gene20024.t1 AT1G05810 57.955 176 74 0 18 193 56 231 8.40e-72 219
MS.gene20024.t1 AT1G73640 55.851 188 82 1 14 201 7 193 1.66e-71 218
MS.gene20024.t1 AT2G31680 56.250 176 77 0 18 193 10 185 1.02e-70 215
MS.gene20024.t1 AT1G18200 49.020 204 97 1 11 207 4 207 2.92e-67 207
MS.gene20024.t1 AT4G17170 47.514 181 95 0 19 199 5 185 4.88e-58 183
MS.gene20024.t1 AT4G35860 49.171 181 88 1 18 194 4 184 6.40e-58 182
MS.gene20024.t1 AT4G17160 50.898 167 82 0 19 185 5 171 4.84e-56 177
MS.gene20024.t1 AT3G11730 44.737 190 105 0 18 207 6 195 5.96e-55 175
MS.gene20024.t1 AT4G17530 43.590 195 108 1 18 212 6 198 1.24e-52 169
MS.gene20024.t1 AT5G47200 48.780 164 84 0 18 181 6 169 2.12e-52 168
MS.gene20024.t1 AT1G02130 42.105 190 109 1 18 207 6 194 3.30e-52 167
MS.gene20024.t1 AT5G59150 61.417 127 49 0 62 188 3 129 5.16e-52 166
MS.gene20024.t1 AT3G46060 41.624 197 109 2 18 213 13 204 2.87e-50 163
MS.gene20024.t1 AT3G46060 41.624 197 109 2 18 213 13 204 2.87e-50 163
MS.gene20024.t1 AT3G46060 41.624 197 109 2 18 213 13 204 2.87e-50 163
MS.gene20024.t1 AT5G59840 41.117 197 110 2 18 213 13 204 7.30e-50 162
MS.gene20024.t1 AT3G53610 43.713 167 93 1 18 183 13 179 3.20e-48 158
MS.gene20024.t1 AT3G53610 43.713 167 93 1 18 183 13 179 3.20e-48 158
MS.gene20024.t1 AT3G53610 43.713 167 93 1 18 183 13 179 3.20e-48 158
MS.gene20024.t1 AT3G09900 42.135 178 102 1 7 183 2 179 1.26e-47 156
MS.gene20024.t1 AT3G54840 42.541 181 99 2 13 192 26 202 2.10e-47 155
MS.gene20024.t1 AT3G54840 43.860 171 91 2 23 192 2 168 1.29e-46 152
MS.gene20024.t1 AT4G19640 41.104 163 96 0 22 184 12 174 1.34e-46 153
MS.gene20024.t1 AT5G03520 41.573 178 103 1 7 183 2 179 3.50e-46 152
MS.gene20024.t1 AT3G54840 44.172 163 90 1 13 174 26 188 5.57e-46 151
MS.gene20024.t1 AT5G45130 40.491 163 97 0 22 184 12 174 2.68e-45 150
MS.gene20024.t1 AT5G45130 40.373 161 96 0 24 184 22 182 7.61e-44 146
MS.gene20024.t1 AT1G43890 41.489 188 107 3 14 199 7 193 1.12e-43 146
MS.gene20024.t1 AT1G43890 41.489 188 107 3 14 199 7 193 1.12e-43 146
MS.gene20024.t1 AT1G43890 41.489 188 107 3 14 199 7 193 1.12e-43 146
MS.gene20024.t1 AT4G35860 50.365 137 64 1 62 194 2 138 1.24e-43 144
MS.gene20024.t1 AT5G10260 39.490 157 95 0 21 177 10 166 4.11e-42 142
MS.gene20024.t1 AT2G44610 36.316 190 111 2 21 200 10 199 5.29e-41 139
MS.gene20024.t1 AT5G03530 42.857 175 97 3 14 186 7 180 5.93e-40 136
MS.gene20024.t1 AT5G03530 42.857 175 97 3 14 186 7 180 5.93e-40 136
MS.gene20024.t1 AT2G22290 37.580 157 98 0 21 177 10 166 5.90e-39 134
MS.gene20024.t1 AT4G39890 37.342 158 98 1 21 177 10 167 5.59e-38 132
MS.gene20024.t1 AT3G09910 42.286 175 98 3 14 186 7 180 1.57e-37 130
MS.gene20024.t1 AT3G09910 42.286 175 98 3 14 186 7 180 1.57e-37 130
MS.gene20024.t1 AT3G09910 42.286 175 98 3 14 186 7 180 1.57e-37 130
MS.gene20024.t1 AT3G09910 41.860 172 97 3 14 183 7 177 4.73e-37 129
MS.gene20024.t1 AT3G09910 41.860 172 97 3 14 183 7 177 4.73e-37 129
MS.gene20024.t1 AT5G64990 36.943 157 99 0 21 177 8 164 8.94e-37 128
MS.gene20024.t1 AT4G19640 41.600 125 73 0 22 146 12 136 3.63e-35 122
MS.gene20024.t1 AT5G03520 42.308 130 74 1 55 183 40 169 1.11e-34 123
MS.gene20024.t1 AT4G19640 40.458 131 78 0 22 152 12 142 1.37e-34 122
MS.gene20024.t1 AT5G64990 35.366 164 99 1 21 177 8 171 5.21e-34 121
MS.gene20024.t1 AT1G52280 39.877 163 89 4 20 174 8 169 8.98e-32 115
MS.gene20024.t1 AT3G18820 39.506 162 91 3 20 174 8 169 9.99e-32 115
MS.gene20024.t1 AT4G09720 38.182 165 95 3 20 177 8 172 1.60e-31 115
MS.gene20024.t1 AT1G22740 36.810 163 96 3 20 175 8 170 1.91e-31 114
MS.gene20024.t1 AT2G21880 36.970 165 97 3 20 177 9 173 3.54e-31 114
MS.gene20024.t1 AT4G09720 37.059 170 95 3 20 177 8 177 6.47e-31 113
MS.gene20024.t1 AT1G49300 38.037 163 94 3 20 175 8 170 4.53e-30 111
MS.gene20024.t1 AT1G49300 38.037 163 94 3 20 175 8 170 4.53e-30 111
MS.gene20024.t1 AT4G09720 35.795 176 95 3 20 177 8 183 6.83e-30 110
MS.gene20024.t1 AT3G16100 38.650 163 91 4 20 174 8 169 1.17e-29 110
MS.gene20024.t1 AT5G39620 35.366 164 99 3 21 177 6 169 2.14e-26 101
MS.gene20024.t1 AT5G55080 31.953 169 111 3 14 181 6 171 1.15e-24 97.4
MS.gene20024.t1 AT5G55190 33.136 169 109 3 14 181 6 171 8.48e-23 92.4
MS.gene20024.t1 AT5G20020 33.136 169 109 3 14 181 6 171 8.57e-23 92.4
MS.gene20024.t1 AT2G21880 34.459 148 90 3 37 177 1 148 8.87e-23 91.7
MS.gene20024.t1 AT2G21880 34.459 148 90 3 37 177 1 148 8.87e-23 91.7
MS.gene20024.t1 AT5G20010 33.136 169 109 3 14 181 6 171 9.32e-23 92.4
MS.gene20024.t1 AT5G46025 45.794 107 56 2 82 186 6 112 1.15e-22 89.4
MS.gene20024.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.84e-22 90.1
MS.gene20024.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.84e-22 90.1
MS.gene20024.t1 AT4G09720 38.519 135 76 3 50 177 4 138 2.84e-22 90.1
MS.gene20024.t1 AT2G21880 32.121 165 97 4 20 177 9 165 1.75e-21 88.6
MS.gene20024.t1 AT2G44690 33.333 165 96 5 22 174 20 182 3.50e-21 88.2
MS.gene20024.t1 AT1G75840 33.333 165 96 5 22 174 8 170 1.30e-20 86.3
MS.gene20024.t1 AT1G20090 32.727 165 97 5 22 174 7 169 3.55e-20 85.1
MS.gene20024.t1 AT4G35020 32.727 165 97 5 22 174 8 170 7.48e-20 84.3
MS.gene20024.t1 AT4G35020 32.727 165 97 5 22 174 8 170 7.48e-20 84.3
MS.gene20024.t1 AT4G35020 32.727 165 97 5 22 174 8 170 7.48e-20 84.3
MS.gene20024.t1 AT3G51300 32.727 165 97 5 22 174 8 170 2.15e-19 83.2
MS.gene20024.t1 AT4G35950 33.333 165 96 5 22 174 8 170 2.51e-19 82.8
MS.gene20024.t1 AT2G17800 32.727 165 97 5 22 174 8 170 4.14e-19 82.4
MS.gene20024.t1 AT2G17800 32.727 165 97 5 22 174 8 170 4.14e-19 82.4
MS.gene20024.t1 AT4G28950 28.934 197 123 6 21 202 7 201 1.24e-18 81.3
MS.gene20024.t1 AT3G48040 29.557 203 125 6 22 212 10 206 1.35e-17 78.6
MS.gene20024.t1 AT5G45970 34.711 121 76 3 22 141 8 126 1.50e-17 78.2
MS.gene20024.t1 AT5G62880 30.387 181 98 5 22 183 10 181 2.33e-17 78.2
MS.gene20024.t1 AT3G48040 36.364 121 74 3 22 141 10 128 3.71e-17 76.6
MS.gene20024.t1 AT4G35020 35.088 114 71 3 22 134 8 119 8.17e-17 74.7
MS.gene20024.t1 AT4G35020 35.088 114 71 3 22 134 8 119 8.17e-17 74.7
MS.gene20024.t1 AT5G62880 34.000 150 87 5 22 170 10 148 8.38e-17 75.9
MS.gene20024.t1 AT4G07524 66.667 33 11 0 44 76 2 34 4.74e-11 57.4

Find 46 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGATTATGTGTTTA+AGG 0.114114 7.4:-1055314 MS.gene20024:CDS
AACAATGTTGCTACACTTAA+AGG 0.136675 7.4:-1053859 MS.gene20024:CDS
ACTAGAACTGTCACAATTAA+TGG 0.238881 7.4:-1055184 MS.gene20024:CDS
CTTCCGTGTGCACCACTCTT+TGG 0.290440 7.4:+1054031 None:intergenic
ATTAGATTCTAACGACCTTT+TGG 0.294249 7.4:+1053891 None:intergenic
ATTGCTTGAAGAGATTAATA+AGG 0.303173 7.4:-1053920 MS.gene20024:CDS
TCCATCGTCGTCATGCTAAT+TGG 0.307865 7.4:-1054075 MS.gene20024:CDS
GCATACTACAGAGGAGCATT+AGG 0.316511 7.4:-1054186 MS.gene20024:CDS
TCGAAAATAGATATAATTTC+AGG 0.332950 7.4:-1053835 MS.gene20024:CDS
GGAAGAAAAGAAACCTTTCT+TGG 0.341516 7.4:+1055125 None:intergenic
AACTCATCAAAGCTCAGATC+TGG 0.360411 7.4:-1055159 MS.gene20024:CDS
CGTTTGATCATGTAGCTAGA+TGG 0.371088 7.4:-1054128 MS.gene20024:CDS
TGTGGAGTTTGCAGAGGATC+AGG 0.380249 7.4:-1054004 MS.gene20024:CDS
CATACTACAGAGGAGCATTA+GGG 0.398256 7.4:-1054185 MS.gene20024:CDS
GTGTTTAAGGTTGTTGTGAT+TGG 0.414253 7.4:-1055301 MS.gene20024:CDS
TTGATCGAAGAAAATGAATC+AGG 0.424173 7.4:-1055371 None:intergenic
ACAATGTTGCTACACTTAAA+GGG 0.474727 7.4:-1053858 MS.gene20024:CDS
TTTGACTCAAAATCAACCAT+TGG 0.498039 7.4:-1055220 MS.gene20024:CDS
TTAATAAGGTTGTCTCCAAA+AGG 0.501126 7.4:-1053906 MS.gene20024:CDS
CATGACGACGATGGAGTTGT+CGG 0.508461 7.4:+1054083 None:intergenic
GGGATACTGCTGGCCAAGAA+AGG 0.510670 7.4:-1055138 MS.gene20024:intron
AGGAGCATTAGGGGCCATGC+TGG 0.520247 7.4:-1054175 MS.gene20024:CDS
AGTCTGAAATTCAACTCCAA+TGG 0.545485 7.4:+1055204 None:intergenic
GTGGAGTTTGCAGAGGATCA+GGG 0.547643 7.4:-1054003 MS.gene20024:CDS
ACTCATCAAAGCTCAGATCT+GGG 0.560858 7.4:-1055158 MS.gene20024:CDS
GAAAGACTCAAATGCTGTCA+AGG 0.561718 7.4:-1055264 MS.gene20024:CDS
TCTGAGACTTCAGCGTTCAG+TGG 0.562534 7.4:-1053970 MS.gene20024:CDS
GCTCAGATCTGGGATACTGC+TGG 0.566767 7.4:-1055148 MS.gene20024:CDS
TGGTAACAAAGGTGATCTTG+TGG 0.577617 7.4:-1054055 MS.gene20024:CDS
TCATGTAGCTAGATGGATTG+AGG 0.580303 7.4:-1054121 MS.gene20024:CDS
AAAATGAATCAGGAAATGAA+TGG 0.586232 7.4:-1055361 MS.gene20024:CDS
ACCAATTAGCATGACGACGA+TGG 0.601530 7.4:+1054074 None:intergenic
GTCATGCTAATTGGTAACAA+AGG 0.622802 7.4:-1054066 MS.gene20024:CDS
AGTTATGTCATACACCAGCA+TGG 0.629305 7.4:+1054161 None:intergenic
GGTGCACACGGAAGATGCTG+TGG 0.634616 7.4:-1054022 MS.gene20024:CDS
CTAGATCAACAAGAACATGA+AGG 0.637055 7.4:+1053778 None:intergenic
GAATCAGGAAATGAATGGTG+TGG 0.639083 7.4:-1055356 MS.gene20024:CDS
GGACCAAAGAGTGGTGCACA+CGG 0.641793 7.4:-1054034 MS.gene20024:CDS
GTGATTGGTGACTCAGCAGT+AGG 0.649343 7.4:-1055286 MS.gene20024:CDS
AGATGCTGTGGAGTTTGCAG+AGG 0.660975 7.4:-1054010 MS.gene20024:CDS
ATACTACAGAGGAGCATTAG+GGG 0.672037 7.4:-1054184 MS.gene20024:CDS
TGAATGGTGTGGAAGCTGAA+AGG 0.673720 7.4:-1055345 MS.gene20024:CDS
CTAGATGGATTGAGGAACTG+CGG 0.688972 7.4:-1054113 MS.gene20024:CDS
TGATCTTGTGGACCAAAGAG+TGG 0.691658 7.4:-1054043 MS.gene20024:CDS
GTTACAAGTGCATACTACAG+AGG 0.706445 7.4:-1054195 MS.gene20024:CDS
ATAATAATATAGGTACAGAG+CGG 0.790789 7.4:-1054217 MS.gene20024:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCTAAAAATATAAAAAATAA+AGG - chr7.4:1054573-1054592 MS.gene20024:intron 10.0%
!!! AACTAAAGTTTTTTTTTTAT+AGG + chr7.4:1054646-1054665 None:intergenic 10.0%
!! GATTTAGTTAGTAAAAAATT+TGG - chr7.4:1054371-1054390 MS.gene20024:intron 15.0%
!!! TTTTCATTAAGAAAATTTAC+AGG - chr7.4:1054777-1054796 MS.gene20024:intron 15.0%
!! ACAGAAATTTATTAATCACT+TGG + chr7.4:1054440-1054459 None:intergenic 20.0%
!! ACCTATAAATTAACATAATC+AGG + chr7.4:1054599-1054618 None:intergenic 20.0%
!! ATAATATAAAAGACATGTCT+CGG - chr7.4:1054866-1054885 MS.gene20024:intron 20.0%
!! CAGAAATTTATTAATCACTT+GGG + chr7.4:1054439-1054458 None:intergenic 20.0%
!! CTAAAAAAAGTTAAAAGTGA+TGG + chr7.4:1054062-1054081 None:intergenic 20.0%
!! CTAAATATGGCAATTATAAT+AGG + chr7.4:1054211-1054230 None:intergenic 20.0%
!! GAAAATAGATTATGTGTTTA+AGG - chr7.4:1053827-1053846 MS.gene20024:CDS 20.0%
!! TCGAAAATAGATATAATTTC+AGG - chr7.4:1055306-1055325 MS.gene20024:CDS 20.0%
!!! TTTTTTTTGTCTAAAGTTTG+TGG + chr7.4:1054172-1054191 None:intergenic 20.0%
! ATAATAATATAGGTACAGAG+CGG - chr7.4:1054924-1054943 MS.gene20024:intron 25.0%
! ATTGCTTGAAGAGATTAATA+AGG - chr7.4:1055221-1055240 MS.gene20024:CDS 25.0%
! CAATTAGAGAAACATCTAAT+TGG + chr7.4:1054714-1054733 None:intergenic 25.0%
! CTTACTATAATTGCCATATT+TGG - chr7.4:1054129-1054148 MS.gene20024:CDS 25.0%
! GAAAATTGGTCGTAATAATT+CGG + chr7.4:1054527-1054546 None:intergenic 25.0%
! GCCTGATTATGTTAATTTAT+AGG - chr7.4:1054595-1054614 MS.gene20024:intron 25.0%
! TATATTATCATGTGCATGTT+TGG + chr7.4:1054854-1054873 None:intergenic 25.0%
! TTCAAGTAAGAAACCAAATA+TGG + chr7.4:1054145-1054164 None:intergenic 25.0%
!! ACATAATCTATTTTCTCTTG+TGG + chr7.4:1053822-1053841 None:intergenic 25.0%
!!! CAAATAGTAGAAAGTACTAA+TGG - chr7.4:1054330-1054349 MS.gene20024:intron 25.0%
!!! GATTTTGAATACATTGGTTT+TGG + chr7.4:1054275-1054294 None:intergenic 25.0%
AACAATGTTGCTACACTTAA+AGG - chr7.4:1055282-1055301 MS.gene20024:CDS 30.0%
ACAATGTTGCTACACTTAAA+GGG - chr7.4:1055283-1055302 MS.gene20024:CDS 30.0%
ACTAGAACTGTCACAATTAA+TGG - chr7.4:1053957-1053976 MS.gene20024:CDS 30.0%
ATGTATTCAAAATCCCAATC+TGG - chr7.4:1054281-1054300 MS.gene20024:intron 30.0%
GGTAAGTAGGAAACTAAATA+TGG + chr7.4:1054224-1054243 None:intergenic 30.0%
TGTATTCAAAATCCCAATCT+GGG - chr7.4:1054282-1054301 MS.gene20024:intron 30.0%
TGTCAATAAGATAGCTCATT+CGG + chr7.4:1054690-1054709 None:intergenic 30.0%
TTAATAAGGTTGTCTCCAAA+AGG - chr7.4:1055235-1055254 MS.gene20024:CDS 30.0%
TTTGACTCAAAATCAACCAT+TGG - chr7.4:1053921-1053940 MS.gene20024:CDS 30.0%
! ATTAGATTCTAACGACCTTT+TGG + chr7.4:1055253-1055272 None:intergenic 30.0%
! GATTGGGATTTTGAATACAT+TGG + chr7.4:1054281-1054300 None:intergenic 30.0%
! TATTACGACCAATTTTCACT+AGG - chr7.4:1054530-1054549 MS.gene20024:intron 30.0%
!!! CATTGGTTTTGGTAGTTTTT+TGG + chr7.4:1054264-1054283 None:intergenic 30.0%
!!! TTTTTTGGTCTGAAGTTTGT+GGG + chr7.4:1054249-1054268 None:intergenic 30.0%
AGGTGATTTCAACAAATCCA+TGG - chr7.4:1054823-1054842 MS.gene20024:intron 35.0%
ATTTCAAGACAACCCAGATT+GGG + chr7.4:1054297-1054316 None:intergenic 35.0%
GGAAGAAAAGAAACCTTTCT+TGG + chr7.4:1054019-1054038 None:intergenic 35.0%
TATTTCAAGACAACCCAGAT+TGG + chr7.4:1054298-1054317 None:intergenic 35.0%
TTAGCTTAAGACAATCCATC+TGG + chr7.4:1054558-1054577 None:intergenic 35.0%
! AATTTTCACTAGGAACCAGA+TGG - chr7.4:1054540-1054559 MS.gene20024:intron 35.0%
! AGTCTGAAATTCAACTCCAA+TGG + chr7.4:1053940-1053959 None:intergenic 35.0%
! ATCTGGTTCCTAGTGAAAAT+TGG + chr7.4:1054541-1054560 None:intergenic 35.0%
! CAGGTTTTGCAAAATCATGT+TGG - chr7.4:1054796-1054815 MS.gene20024:intron 35.0%
! GTCATGCTAATTGGTAACAA+AGG - chr7.4:1055075-1055094 MS.gene20024:intron 35.0%
! GTGTTTAAGGTTGTTGTGAT+TGG - chr7.4:1053840-1053859 MS.gene20024:CDS 35.0%
!! TGCAAAATCATGTTGGTTCA+AGG - chr7.4:1054803-1054822 MS.gene20024:intron 35.0%
!!! GTTTTTTGGTCTGAAGTTTG+TGG + chr7.4:1054250-1054269 None:intergenic 35.0%
AACACATACAACTAGCCAAC+CGG - chr7.4:1054405-1054424 MS.gene20024:intron 40.0%
AACTCATCAAAGCTCAGATC+TGG - chr7.4:1053982-1054001 MS.gene20024:CDS 40.0%
AAGTTTGTGGGATGGTAAGT+AGG + chr7.4:1054237-1054256 None:intergenic 40.0%
AATCACTTGGGATCAACAAC+CGG + chr7.4:1054427-1054446 None:intergenic 40.0%
ACTCATCAAAGCTCAGATCT+GGG - chr7.4:1053983-1054002 MS.gene20024:CDS 40.0%
AGTTATGTCATACACCAGCA+TGG + chr7.4:1054983-1055002 None:intergenic 40.0%
CGTTTGATCATGTAGCTAGA+TGG - chr7.4:1055013-1055032 MS.gene20024:intron 40.0%
CTGAAGTCTCAGAGAAAAAG+AGG + chr7.4:1055164-1055183 None:intergenic 40.0%
GAAAGACTCAAATGCTGTCA+AGG - chr7.4:1053877-1053896 MS.gene20024:CDS 40.0%
GAATCAGGAAATGAATGGTG+TGG - chr7.4:1053785-1053804 MS.gene20024:CDS 40.0%
GACAAGCAAGTAAAACAGAG+AGG + chr7.4:1054040-1054059 None:intergenic 40.0%
GTGCATGTTTGGTATTTCCA+TGG + chr7.4:1054843-1054862 None:intergenic 40.0%
GTTACAAGTGCATACTACAG+AGG - chr7.4:1054946-1054965 MS.gene20024:intron 40.0%
TGGTAACAAAGGTGATCTTG+TGG - chr7.4:1055086-1055105 MS.gene20024:intron 40.0%
!! ATACTACAGAGGAGCATTAG+GGG - chr7.4:1054957-1054976 MS.gene20024:intron 40.0%
!! CATACTACAGAGGAGCATTA+GGG - chr7.4:1054956-1054975 MS.gene20024:intron 40.0%
!! TCATGTAGCTAGATGGATTG+AGG - chr7.4:1055020-1055039 MS.gene20024:intron 40.0%
ACCAATTAGCATGACGACGA+TGG + chr7.4:1055070-1055089 None:intergenic 45.0%
TCCATCGTCGTCATGCTAAT+TGG - chr7.4:1055066-1055085 MS.gene20024:intron 45.0%
TGAATGGTGTGGAAGCTGAA+AGG - chr7.4:1053796-1053815 MS.gene20024:CDS 45.0%
TGATCTTGTGGACCAAAGAG+TGG - chr7.4:1055098-1055117 MS.gene20024:intron 45.0%
! TTGGTCTGAAGTTTGTGGGA+TGG + chr7.4:1054245-1054264 None:intergenic 45.0%
!! CTAGATGGATTGAGGAACTG+CGG - chr7.4:1055028-1055047 MS.gene20024:intron 45.0%
!! GCATACTACAGAGGAGCATT+AGG - chr7.4:1054955-1054974 MS.gene20024:intron 45.0%
!! ATGTTATATAATAATAATAT+AGG - chr7.4:1054914-1054933 MS.gene20024:intron 5.0%
ACTTGGGATCAACAACCGGT+TGG + chr7.4:1054423-1054442 None:intergenic 50.0%
AGATGCTGTGGAGTTTGCAG+AGG - chr7.4:1055131-1055150 MS.gene20024:intron 50.0%
CATGACGACGATGGAGTTGT+CGG + chr7.4:1055061-1055080 None:intergenic 50.0%
GTGGAGTTTGCAGAGGATCA+GGG - chr7.4:1055138-1055157 MS.gene20024:intron 50.0%
TGTGGAGTTTGCAGAGGATC+AGG - chr7.4:1055137-1055156 MS.gene20024:intron 50.0%
! GTGATTGGTGACTCAGCAGT+AGG - chr7.4:1053855-1053874 MS.gene20024:CDS 50.0%
! TCTGAGACTTCAGCGTTCAG+TGG - chr7.4:1055171-1055190 MS.gene20024:CDS 50.0%
CTTCCGTGTGCACCACTCTT+TGG + chr7.4:1055113-1055132 None:intergenic 55.0%
GGACCAAAGAGTGGTGCACA+CGG - chr7.4:1055107-1055126 MS.gene20024:intron 55.0%
GGGATACTGCTGGCCAAGAA+AGG - chr7.4:1054003-1054022 MS.gene20024:CDS 55.0%
! GCTCAGATCTGGGATACTGC+TGG - chr7.4:1053993-1054012 MS.gene20024:CDS 55.0%
GGTGCACACGGAAGATGCTG+TGG - chr7.4:1055119-1055138 MS.gene20024:intron 60.0%
!! AGGAGCATTAGGGGCCATGC+TGG - chr7.4:1054966-1054985 MS.gene20024:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 1053783 1055380 1053783 ID=MS.gene20024
chr7.4 mRNA 1053783 1055380 1053783 ID=MS.gene20024.t1;Parent=MS.gene20024
chr7.4 exon 1055139 1055380 1055139 ID=MS.gene20024.t1.exon1;Parent=MS.gene20024.t1
chr7.4 CDS 1055139 1055380 1055139 ID=cds.MS.gene20024.t1;Parent=MS.gene20024.t1
chr7.4 exon 1053783 1054227 1053783 ID=MS.gene20024.t1.exon2;Parent=MS.gene20024.t1
chr7.4 CDS 1053783 1054227 1053783 ID=cds.MS.gene20024.t1;Parent=MS.gene20024.t1
Gene Sequence

>MS.gene20024

ATGAATCAGGAAATGAATGGTGTGGAAGCTGAAAGGCCACAAGAGAAAATAGATTATGTGTTTAAGGTTGTTGTGATTGGTGACTCAGCAGTAGGAAAGACTCAAATGCTGTCAAGGTTTGCAAAGAATGAGTTCTGTTTTGACTCAAAATCAACCATTGGAGTTGAATTTCAGACTAGAACTGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTTTCTTTTCTTCCTCTCTGTTTTACTTGCTTGTCCATCACTTTTAACTTTTTTTAGTTTATTGCATAACAATGTTATTGTGATCTCAATTTGACATTAAGAATCTTACTATAATTGCCATATTTGGTTTCTTACTTGAAAATTCCACAAACTTTAGACAAAAAAAAATACTACATTAAGAATCCTATTATAATTGCCATATTTAGTTTCCTACTTACCATCCCACAAACTTCAGACCAAAAAACTACCAAAACCAATGTATTCAAAATCCCAATCTGGGTTGTCTTGAAATAGATATCTGTTTTCAAATAGTAGAAAGTACTAATGGATGTTAAATAATGAAATTGATTTAGTTAGTAAAAAATTTGGTTATGCAATGCAACACATACAACTAGCCAACCGGTTGTTGATCCCAAGTGATTAATAAATTTCTGTTAAGATCGAATCAATCAGAGCAATTCGAGTTCTATTTATGACTTAAACAACTATTGATTCGAGTCCGAATTATTACGACCAATTTTCACTAGGAACCAGATGGATTGTCTTAAGCTAAAAATATAAAAAATAAAGGCCTGATTATGTTAATTTATAGGTAAATATTCATAATTTATCTTTCAGCCTATAAAAAAAAAACTTTAGTTACATCTAATTAATTTATATTTCCGAATGAGCTATCTTATTGACATCCAATTAGATGTTTCTCTAATTGAAAAATCAGCAAAATGACATTAATAATCATTTTTAGATAAGTTTTTTCATTAAGAAAATTTACAGGTTTTGCAAAATCATGTTGGTTCAAGGTGATTTCAACAAATCCATGGAAATACCAAACATGCACATGATAATATAAAAGACATGTCTCGGATAAATTATCATGATTTTGTTGCTAATGTTATATAATAATAATATAGGTACAGAGCGGTTACAAGTGCATACTACAGAGGAGCATTAGGGGCCATGCTGGTGTATGACATAACTAAAAGACAAACGTTTGATCATGTAGCTAGATGGATTGAGGAACTGCGGTCACACGCCGACAACTCCATCGTCGTCATGCTAATTGGTAACAAAGGTGATCTTGTGGACCAAAGAGTGGTGCACACGGAAGATGCTGTGGAGTTTGCAGAGGATCAGGGCCTCTTTTTCTCTGAGACTTCAGCGTTCAGTGGTGAAAATGTGAACTCTGCATTTTTCAAATTGCTTGAAGAGATTAATAAGGTTGTCTCCAAAAGGTCGTTAGAATCTAATAATAGTAACAACAATGTTGCTACACTTAAAGGGTCGAAAATAGATATAATTTCAGGTTCTGAATTAGAAATTACTGAAATGAAGAACGTACCTTCATGTTCTTGTTGA

Protein sequence

>MS.gene20024.t1

MNQEMNGVEAERPQEKIDYVFKVVVIGDSAVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWIEELRSHADNSIVVMLIGNKGDLVDQRVVHTEDAVEFAEDQGLFFSETSAFSGENVNSAFFKLLEEINKVVSKRSLESNNSNNNVATLKGSKIDIISGSELEITEMKNVPSCSC