AlfalfaGEDB | MS.gene24073

M. sativa cultivar XinJiangDaYe / MS.gene24073

KEGG: K07901
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24073.t1	XP_013468318.1	100	216	0	0	1	216	1	216	1.10E-114	422.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24073.t1	O24466	90.7	216	20	0	1	216	1	216	1.0e-108	394.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24073.t1	A0A072VWD9	100.0	216	0	0	1	216	1	216	8.2e-115	422.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000342	MS.gene24073	PPI
MS.gene001096	MS.gene24073	PPI
MS.gene003158	MS.gene24073	PPI
MS.gene004991	MS.gene24073	PPI
MS.gene005920	MS.gene24073	PPI
MS.gene006087	MS.gene24073	PPI
MS.gene006652	MS.gene24073	PPI
MS.gene007373	MS.gene24073	PPI
MS.gene007571	MS.gene24073	PPI
MS.gene008351	MS.gene24073	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24073.t1	MTR_1g068740	100.000	216	0	0	1	216	1	216	2.46e-162	446
MS.gene24073.t1	MTR_1g068730	99.537	216	1	0	1	216	1	216	1.22e-161	445
MS.gene24073.t1	MTR_1g115325	92.195	205	16	0	11	215	11	215	6.26e-142	395
MS.gene24073.t1	MTR_7g100020	95.146	206	10	0	11	216	11	216	2.05e-140	391
MS.gene24073.t1	MTR_4g063160	87.923	207	22	2	11	215	11	216	2.13e-133	374
MS.gene24073.t1	MTR_2g096550	75.926	216	48	3	1	215	1	213	1.10e-115	328
MS.gene24073.t1	MTR_1g068740	98.582	141	2	0	1	141	1	141	2.96e-100	289
MS.gene24073.t1	MTR_1g068730	97.872	141	3	0	1	141	1	141	4.12e-99	285
MS.gene24073.t1	MTR_7g081700	61.058	208	70	4	11	216	4	202	1.41e-86	254
MS.gene24073.t1	MTR_8g006970	59.903	207	71	4	13	216	20	217	2.34e-82	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24073.t1	AT3G53610	90.777	206	19	0	11	216	11	216	9.03e-143	397
MS.gene24073.t1	AT3G53610	90.777	206	19	0	11	216	11	216	9.03e-143	397
MS.gene24073.t1	AT3G53610	90.777	206	19	0	11	216	11	216	9.03e-143	397
MS.gene24073.t1	AT5G59840	91.262	206	18	0	11	216	11	216	3.88e-142	395
MS.gene24073.t1	AT3G46060	90.291	206	20	0	11	216	11	216	3.33e-141	393
MS.gene24073.t1	AT3G46060	90.291	206	20	0	11	216	11	216	3.33e-141	393
MS.gene24073.t1	AT3G46060	90.291	206	20	0	11	216	11	216	3.33e-141	393
MS.gene24073.t1	AT5G03520	85.514	214	30	1	1	214	1	213	3.10e-129	363
MS.gene24073.t1	AT3G09900	85.116	215	31	1	1	214	1	215	1.31e-128	362
MS.gene24073.t1	AT5G03520	83.636	165	26	1	50	214	40	203	1.24e-101	293

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Find 49 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAACCTGACCAGGGAGC+TGG	0.525034	1.4:-54852627	MS.gene24073:CDS
AACTAATATGAATGTGGAGG+AGG	0.516237	1.4:-54852938	MS.gene24073:CDS
AACTTCAAAGGGTCAAGCTC+TGG	0.455648	1.4:-54853089	MS.gene24073:CDS
AAGATTAACCAACCTGACCA+GGG	0.664294	1.4:-54852633	MS.gene24073:CDS
AATGTCAACAAAATATTAGT+GGG	0.485156	1.4:-54853257	MS.gene24073:CDS
ACGAACCGCTATCACCGATG+AGG	0.719307	1.4:+54859278	None:intergenic
ACTGTTAAAAGACGACTCAT+CGG	0.609470	1.4:+54853551	None:intergenic
AGAAAGTGACTCAAAGACGG+AGG	0.703164	1.4:-54852875	MS.gene24073:intron
AGAGCTTGACCCTTTGAAGT+TGG	0.487525	1.4:+54853091	None:intergenic
AGCCAGCTCCCTGGTCAGGT+TGG	0.522144	1.4:+54852625	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACCAGCAATATCA+AGG	+	chr1.4:54859179-54859198	None:intergenic	30.0%
AACATTAGCACAATATGACA+TGG	-	chr1.4:54855570-54855589	MS.gene24073:intron	30.0%
AAGTTTACTGTAACAAATGG+AGG	-	chr1.4:54852772-54852791	MS.gene24073:intron	30.0%
AATTTGCCAATTCAAGAAGT+TGG	-	chr1.4:54857810-54857829	MS.gene24073:intron	30.0%
ACAAAGTAATAAAGGAGGAA+TGG	+	chr1.4:54858425-54858444	None:intergenic	30.0%
ACAAGTAGTGTCCAAAATAT+AGG	-	chr1.4:54856742-54856761	MS.gene24073:intron	30.0%
ACTCTGCATAAACATAATCT+CGG	+	chr1.4:54858955-54858974	None:intergenic	30.0%
ACTGCAGTATTATTAGTGTA+TGG	-	chr1.4:54854649-54854668	MS.gene24073:intron	30.0%
AGAAGGAGCAATAAATAAGT+AGG	+	chr1.4:54855167-54855186	None:intergenic	30.0%
AGCGAATCAAATTGCAAATA+TGG	-	chr1.4:54854955-54854974	MS.gene24073:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	54852584	54859356	54852584	ID=MS.gene24073
chr1.4	mRNA	54852584	54859356	54852584	ID=MS.gene24073.t1;Parent=MS.gene24073
chr1.4	exon	54859284	54859356	54859284	ID=MS.gene24073.t1.exon1;Parent=MS.gene24073.t1
chr1.4	CDS	54859284	54859356	54859284	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54857139	54857211	54857139	ID=MS.gene24073.t1.exon2;Parent=MS.gene24073.t1
chr1.4	CDS	54857139	54857211	54857139	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54856923	54857023	54856923	ID=MS.gene24073.t1.exon3;Parent=MS.gene24073.t1
chr1.4	CDS	54856923	54857023	54856923	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54853553	54853618	54853553	ID=MS.gene24073.t1.exon4;Parent=MS.gene24073.t1
chr1.4	CDS	54853553	54853618	54853553	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54853226	54853323	54853226	ID=MS.gene24073.t1.exon5;Parent=MS.gene24073.t1
chr1.4	CDS	54853226	54853323	54853226	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54853057	54853119	54853057	ID=MS.gene24073.t1.exon6;Parent=MS.gene24073.t1
chr1.4	CDS	54853057	54853119	54853057	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54852876	54852968	54852876	ID=MS.gene24073.t1.exon7;Parent=MS.gene24073.t1
chr1.4	CDS	54852876	54852968	54852876	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1
chr1.4	exon	54852584	54852667	54852584	ID=MS.gene24073.t1.exon8;Parent=MS.gene24073.t1
chr1.4	CDS	54852584	54852667	54852584	ID=cds.MS.gene24073.t1;Parent=MS.gene24073.t1

Gene Sequence

>MS.gene24073

ATGGCTGCTCCACCTGCAAGAGCTCGATCCGATTACGATTACTTAATCAAGCTTCTCCTCATCGGTGATAGCGGTTCGTACTTTTTCAATTCTTTCTCTTTTCGCACTTTAGATTTTAATTCTGCTAAATATCTCATTAGGTTTTATTATTTTTAGCGGTAATTCGATTCTTAGTTGCGTAATCATACAAGTTTACTGTAACAAATGGAGGTAGTAACTTATTTTTGTCAATGAAAAGGTAAAAGGGTTACAACTAATTATTATTTATTAAGGCTTAACTCAACTGACCATGTGATTGTCATGTAGACTTTTTGCCCTGTTTGGATAAACAACTTAATCAAACTTGCTTATGTATGTATAAGTTATTTCTATCACAAAATATATATAATAAAATCAAACGGTTTTCATATAGAATAAGGTTGTTTGAAGGTGAGGGATGTGAGAGCGGTCAACTTGAGTTTTTTGGCGCGTTGGCGTATACTACAACATGATTTTCCTTTGTGGAAAGAAGTGGTTGTCAAGAAAGTGTGGGGTGGATATTGAGAGGAAAGTTGATTGGAGTGGAGTCACTTGCCGAGAAGTGCTTCTATATGGTGGAGAGATTTAACTTCCTTGGAGGATTCGGTATTCGGTTGGAGGAGATTGGTTCAAAAGGGAAGTGTTTAAGAAAGTTGATAGTGCCAAGTTGATTTATTTTGGAGAGATAAGTGGTTGGGTAATAGGGTTTTTTGTGATCTTTTCCCGCGGTTGTTTGCTATTATAGATAGAAAGGATGCGAAATTGAGTGAGGTTTGTGTTAGAAATGGGGAAGAGTGGAATTGGACGTGGTTGTGGAGAAGGTGGTTGTTTGTATGGGAGGAGAGTTTAATTGAGCAATTATTTGATGTTGTTGAATGATTTGGTACTAAATACCGAGAGAGATAGTTGGGGGTAGAGACCGGAAGGTGGAGGTGTGTTCTCGCTAAAATCAACTTATGACTTTTTGGAGGGGATTTTTGTGTTGGAAAATGATCTAGGTGAATAGGAAAAAGGGGTTTTTGGAGGCCTTTGGAAAAGTCTGGCACCTTCAAAATAGTGGCTTGCTCTTGGAAAATGCTCCTAGATAGAATTCCAGTCCAGAATAATTTGTGGAAAAGGCATGCTATTGTTCCCGAAGCCTCTAGAGAGTGTTTTTTGTGGGAATGATGAGGAATCTTCTATCCACCTTTTTCTTCATTGTTATGTTGTTGCTCAAGTGTGGGATAAGATTTTGAGATGGATAGGTGGGGAATTTATTACACCCCCAAACCATTTGTTCATATTGAATGTTTGATCGGATGTTCTCAAAATAAATAGTGGAAAAAAGGGTTTTGGCTTATTTGGCACACTACCGTTTGGGTGATCTGGAGTACGAGAAATAGGAAGATTTTCAAGAATCAAGATTTTGAGGTTGATGCAATGATGGAGGAAATCAAAGTGCTCTTATGGAAGTGGAGCTTGAGTAGATTGAAAGCATCACCATGTATGTTCTATGAATGGAAATGGTGTACGGGAGATTGCTTTGCTAGGTGGGAAGTTGGGATTGCTGTGCATGGTTCTTTTTCAGCGCTGTTTTGGGTTGCTGGGCTGTGTACGTGGCTGTTGATTGGCGTGTGTTGGGGGTAACCAAATACTGGGTGGTTGTTTTGATGTTTTTCCTCTTTTTTTGGAGGGGGTCAGGGGTGTGTTTTTTGTCCCTGTTTGTTGCGTTGTTCAGGAGGTGCTCCTGCGATTCTCTGTTTTGTTTGTTGTTCCAGCATCGGTTTAGGGTACTGGATTGTGGTTTGTTTAAGTTGTATCCGCTCTTTTCGCCCGGCCATCATGGCTTGTGATGGTACCGTCTGCGTTATAAAATTTGTTGCTTAAAAAAAAACGGTTTTCATTTAAGCCATACTCTGTTTTCATATATCTACCTTGGGGAAATAAGTTGAAAACAAATTATGGGATGTTACAAGCTGTTTCCATAAGCTCTCACAAAAATTATCGTAAGTGCGCATGTCAGCAAATAAGCTAAACCAAACATGCCTTATATCTCCACTCTTTCTCCACTGCAGTATTATTAGTGTATGGAATGTATCTTATTGGGTCTCGTTTGTATTACATTACATTCTTTTTTCACATTGGCAGGTGTGGGTAAAAGTTGCCTTTTACTGCGTTTCTCAGATGGTTCATTCACAACCAGTTTTATTACAACCATTGGGTAGGTTCTCTGATCTCTGTGTGAACTTGCTTATTTTATGTTTCCGCTGTTCTTCTTTTGTCTCTTTCTTTAGGGGATGGGCCTGTACTTACTAAAATGTGTTATTTTTCTTTAGCATTGATTTCAAAATAAGGACCATAGAGCTTGATGGTAAGCGAATCAAATTGCAAATATGGGACACGGCTGGTCAAGAGCGGTTTCGAACCATTACAACTGGTTAGTTTCAGTTATTGAAATTTATTTGTTTTGTTCTCTTTCCCATCCAATATAACTAGAATAATTAGTGAGAGCTCAATCGTGGCTCTGTATATTCAACATATGTACACTTATGCAATGTGTGTTTGTCATGATATTAATCAATTCCTACTTATTTATTGCTCCTTCTGTTCTTGCAAATTAGATAGGAACCACTATAAATATTAAATAGTATATTTCAATATTATTTTTTGATTAAGGCAAATAGAGTTCCCTTTCTTCTCTAACTTGCTAAACCGTTTGTTATTGAAAACCGTCCTGTTTTGAATAAGATTTTAAGATTGGCGGCCTGTCAATAGATCTTTTAAGATTACTGACTGTTTGAGACGATATGCTTTTTTACTAGATTGTATGGGTTGGATCTCTTCATTAGATTGGTTTAGACTTTACCTAAAAATTCTGGATATTATCAGACCTGTAAAGTAGTTCGATCTCCAGTGCCGGACCCACTGATTATCACCTTACACGTGATTGAGGTTTAGTTCTACTATATGAAGCTCGGATGCTTGATACAACATTAGCACAATATGACATGGATGTGGAAATTCTTGAAAACTGAAGATATTAGATGGCCTAAATTCATTTACACAAATTTATGAAAAATTTACTTTATTATTATTTTACAGAAATGCAATAATATTTGTAAAGAAACATTGATGTTTTTTTTTTATTTTTTTTTTTATCAATATATAAGTATGTTTATTTGCATATTATGATCACAAGTTCACAACTCACAAAAATACCTGTTTTTTTTGAAACAACAAATGTTAGTATTGTTAGTTTTTTGTCGGGAGTGGGCAGGGACGGACCCAGGTTGCACACATTGTGGGCCTGGGCCCTCACTATATTTTGGGAAGAAAATTAAGTAATACCATTTGTATTCATTTCCCTTATTATTTTAGCTAAAAAAATGATATATGTAATATTATATGTACAAAGTAATATACATATTTTGTCTATATATCCTAAATCAACTGATAAAAATACCGAAATTGTTAGATTGAATATCGTGATCGAGGTTCGAACCTCGGCTCCTCCACTTGTGTGTGTGGATTTCATTAGTTATTTGTCATTTTATCTATTTATAAAAGATAAGTAATATACGTATTTTGACTAATATTATAAATATATATTCATCTTTCTATTAAGTTAGCGTAGACGAGAAAACATGTTGGATACTCGTTGATATATTTATTTTAAGAGTTATTCTTATATTAGATGTGACAATTGCAATTATTGAAAGAGTTTTCTCTACTATGAATATTTTCAAGAATTGAAAGGTTTTTAATAACATTGAAAAGGAAAAAATCATTTATTGTTTCCAAAGTAAAAAAAATTACCAAAACCAATTATATGATGTATGTTTATGTTTTAAAAAAAATACATATGTTGCCCTCACTACTCAAATCTTTTGGGTCCGTCCCTGGGAGTGGGGATCAAATTCTCCATCTCCTTATCACTCCACTCCTTACAAAAAATACTTCTAATCATTACAAAAAATATTGAGACATATTTTTCCTCTTCCCATATCAAATATTTATTATTTTCCTTGTGACATATCATAAATGTATTCTATTTCCCTAATCATTTTCAAAATGTCACTAAGTACCACTGCTCCTATTTAAACTAATCTAGACCTATGAAGTATAGACTCTGACATACGGACACGGCAAACACTTTGAGACACAAGTAGTGTCCAAAATATAGGACACTGGAACACCTCATACTTGTGTATATTTTTATTTATGCGTATGTGTGTATATATAATTGACTCAGCAAAATTCTAAATTAAGAATTTAGATTCATATATTAACCTTCTAAAAATAAATTCATGTTAATGATATGACTCTCACAAAGAAGAATACTAATATTGTATTAGGAATATACCTTATGCTGTTATAATTGTACCAGAGGATCAATCTTTTCTCTTCCTCCAGAATTCTGTTAGGACAGCTGTCCTAACATAGGAGATAGGACAACTGACACTTGTGTTAGAGTTAGTTAGGATCTAGCTACTTTATAAATACTCTGATTGTATCTCATTTCAAAACTATCTAGAACTTTCCCTCTCTTTCTCATTTCTCTGAATCCTCAACTTCCAGCATGGAATCTTAGAGCTTCTTTTCGATCCTTAGCCATGGCTATCAGCCACTTCTCGTACTTCTGCTCATGTCACTGATCGAGTTACCGCCACAGCAGCACCAACAACATTCAAGCAAAAGATCTATGTTAAACTTGACGATAAAAATTACCTTCAATGAAAGCAACAAGTTAAAGGTGTTCGTTGAGGAACGAACATGGTGAAATATGTTGTTCTACAAAAAATTCCCAGTATTGATCCTCTGGTACAATTATAACAGCATAAAGTTTATTCCTAATAAAATAAGACTAAGGGGAATCATTTATAATGGCAATCTTTATCTATATAACATAAGATAAGAATATAAATCATGTCTATTATAACAACTAGTTAATCCTATGATAATGATCCTCACAAAAAAATGATAAGACATCATTGTTTTAGTTCTCATAAAAAGGAAAAGATCTAATCTAGAATTAGAAGTGTCAGACAAGTGTCTGGCCAAGAGCATGCATCGGCTCAGTTTTTTGCTCGCGTGTCCAAGACTTATCTAATAGGTGTCCGAACCAGTTTTATTTATTTAATTGGACAACGTTAAAAGGTGTTTGACATGTGTCCAAGGGATCTTCATCTTCCCATTATCATCATCCAAAACAGCATAGCTTCTAAATTTAATTTGCCAATTCAAGAAGTTGGTCACCTTCATCATCAAATTAATCATGGATATCACTACCAATATCCCACAAGCATCCCTCTCCCTCTTTTCATATCCTCAAAACATGAATAAAGAGTATTTTGACTCCAATTATGCTCACAATTTGAGGGAGAACAAGGCTCAAGTTACTGGAGCTGTATCCCAAAGTGTTGAAGAGGCATCCTTAATTTATCTGTCAAATATTATCTTTTAAAATTTTAAAAAGGCGGAGGTTTTTTTTTTTCCGGATACTGATCTAGGAGTGTTATATGCATACGGGAATACAGCTATAACATCGACACTTTAGCAATTTTAGAGTATCATAGCTTTTTAGGTTCTACTCTATATAGTAACGTGATTATGTATTGTAAGATGTTGCTCTGTTTGTCAATATCAGTACATATTGTGATATCGATTGACAACCATCACTATTTCAAACACACTATTTCTAATTCTACTCTGACGATGTGTTTAATCTTTTTGTTGGGCAGCTTATTACCGTGGAGCAATGGGTATTTTGCTTGTGTATGATGTCACCGATGAGTCGTCTTTTAACAGTAAGTTCTTCCTCCTCCTGGTTATAGTTTTGCGCCATTCCTCCTTTATTACTTTGTCCACATTCTTAATCTTCTACAATGCGTGTTTCTTTAAATCCACATGCATCATTGGAGTAAGTATTTTTGTTTGCAAACTCTACTTTTCAACTTTGTATTTTGGGGAGATTCCAGTGCTTAAATGTGTATTAAGATGGAACTGACTTCTATATTTGTTTCATCTCATATCCAGACATCAAGAATTGGATTCGCAACATTGAGCAGCATGCTTCTGACAATGTCAACAAAATATTAGTGGGGAACAAGGCTGACATGGATGAAAGCAAAAGGGTTTGCCCCACACACTCACTCTTTCTCCAACCTTTTGGTTTTCCATGTACACGTATCTCCTGTGATTACTATGCTACACTTGATGCTGGAAATTTATTCTCCTTAGGCTGTTCCAACTTCAAAGGGTCAAGCTCTGGCAGACGAATACGGCATCAAGTTTTTTGAAACTGTAAGCAGCACTTTTTAGTTGTTACTCTTGTTGGAAAAGCATCTGAAATCGCTGTGCTGTTTTTAATGCCGAGATTATGTTTATGCAGAGTGCAAAAACTAATATGAATGTGGAGGAGGTTTTCTTTTCAATAGCTCGGGACATCAAACAAAGACTTGCAGAAAGTGACTCAAAGACGGAGGTTTTTATTTCAACCTTTCTTTTGTTATGATGGATTCATTATCTTGCAAGTTGCAAAACATTTTATAATTGCTTCATTTTTTGATATATTTGAAGTTAATGCTAGACTCTTCCTTGATATTGCTGGTTTTCTTTTTTAGACTACTATTATGTTGCATGTTTGGTTGCCTCATCATCTTTGCGCTAAACTTTTATTTCGTTCATTGCAGCCCCAAACACTCAAGATTAACCAACCTGACCAGGGAGCTGGCTCTGCTCAAGCATCACAAACATCGTCTTGCTGTGGTTCTTAG

Protein sequence

>MS.gene24073.t1

MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCGS