Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012217.t1 | XP_013458417.1 | 95.3 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 1.20E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012217.t1 | Q9FEW9 | 72.7 | 330 | 87 | 1 | 16 | 342 | 7 | 336 | 2.1e-143 | 510.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012217.t1 | A0A072UTR0 | 95.3 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 8.9e-188 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012217.t1 | MTR_4g125470 | 95.322 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 0.0 | 677 |
| MS.gene012217.t1 | MTR_5g006710 | 50.613 | 326 | 142 | 3 | 17 | 342 | 8 | 314 | 2.20e-117 | 344 |
| MS.gene012217.t1 | MTR_5g006800 | 50.606 | 330 | 150 | 3 | 13 | 342 | 4 | 320 | 1.52e-115 | 339 |
| MS.gene012217.t1 | MTR_5g006670 | 50.621 | 322 | 140 | 3 | 21 | 342 | 8 | 310 | 6.33e-115 | 337 |
| MS.gene012217.t1 | MTR_5g006740 | 50.617 | 324 | 143 | 5 | 21 | 342 | 8 | 316 | 2.11e-111 | 328 |
| MS.gene012217.t1 | MTR_5g006780 | 51.077 | 325 | 142 | 5 | 21 | 342 | 12 | 322 | 7.15e-111 | 327 |
| MS.gene012217.t1 | MTR_3g115600 | 51.212 | 330 | 142 | 5 | 14 | 342 | 3 | 314 | 3.11e-110 | 326 |
| MS.gene012217.t1 | MTR_5g006750 | 49.221 | 321 | 148 | 4 | 21 | 339 | 12 | 319 | 1.23e-107 | 319 |
| MS.gene012217.t1 | MTR_5g008040 | 49.843 | 319 | 147 | 4 | 21 | 339 | 14 | 319 | 5.71e-107 | 318 |
| MS.gene012217.t1 | MTR_5g006740 | 47.531 | 324 | 136 | 6 | 21 | 342 | 8 | 299 | 2.20e-96 | 290 |
| MS.gene012217.t1 | MTR_5g006720 | 46.526 | 331 | 124 | 4 | 21 | 339 | 11 | 300 | 2.49e-96 | 290 |
| MS.gene012217.t1 | MTR_5g006730 | 53.774 | 106 | 49 | 0 | 21 | 126 | 12 | 117 | 3.96e-39 | 135 |
| MS.gene012217.t1 | MTR_3g096570 | 72.581 | 62 | 17 | 0 | 186 | 247 | 8 | 69 | 2.35e-25 | 103 |
| MS.gene012217.t1 | MTR_3g096562 | 66.667 | 66 | 22 | 0 | 182 | 247 | 168 | 233 | 7.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012217.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene012217.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene012217.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene012217.t1 | AT1G76690 | 49.080 | 326 | 153 | 3 | 14 | 339 | 7 | 319 | 6.83e-112 | 330 |
| MS.gene012217.t1 | AT1G76680 | 49.693 | 326 | 151 | 3 | 14 | 339 | 5 | 317 | 2.18e-110 | 326 |
| MS.gene012217.t1 | AT1G09400 | 48.562 | 313 | 142 | 3 | 27 | 339 | 1 | 294 | 8.30e-107 | 315 |
| MS.gene012217.t1 | AT1G76680 | 46.154 | 351 | 151 | 4 | 14 | 339 | 5 | 342 | 8.70e-105 | 313 |
| MS.gene012217.t1 | AT1G17990 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.34e-99 | 295 |
| MS.gene012217.t1 | AT1G18020 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.34e-99 | 295 |
| MS.gene012217.t1 | AT1G17990 | 51.172 | 256 | 110 | 3 | 18 | 273 | 6 | 246 | 3.02e-91 | 273 |
| MS.gene012217.t1 | AT1G09400 | 48.425 | 254 | 112 | 3 | 86 | 339 | 1 | 235 | 9.94e-83 | 252 |
Find 97 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAATCCTTGACTATTTC+TGG | 0.074699 | 8.3:-4603950 | None:intergenic |
| GTGGTTCGGGCCGTTGTTTC+TGG | 0.111017 | 8.3:+4604316 | MS.gene012217:CDS |
| TCCATCTCTCCCACTGCTTA+TGG | 0.186529 | 8.3:+4602747 | MS.gene012217:CDS |
| CGGGCCGTTGTTTCTGGTAT+TGG | 0.254686 | 8.3:+4604322 | MS.gene012217:CDS |
| CAACCTCGATATACAGCTTA+TGG | 0.287602 | 8.3:+4604496 | MS.gene012217:CDS |
| TCGATGCAGGTTCTTAATTC+AGG | 0.309680 | 8.3:+4604294 | MS.gene012217:CDS |
| GGTTCTTAATTCAGGTGGTT+CGG | 0.310782 | 8.3:+4604302 | MS.gene012217:CDS |
| GATTCTGATCCACTTGGATT+AGG | 0.315458 | 8.3:+4604400 | MS.gene012217:CDS |
| GGGTTTGGTTGTGGATGAAA+TGG | 0.321666 | 8.3:-4603843 | None:intergenic |
| CCACCTCTCTAGAAGGGGTT+TGG | 0.330917 | 8.3:-4603858 | None:intergenic |
| GTTCTTAATTCAGGTGGTTC+GGG | 0.333795 | 8.3:+4604303 | MS.gene012217:CDS |
| CCATCTCTCCCACTGCTTAT+GGG | 0.338294 | 8.3:+4602748 | MS.gene012217:CDS |
| CTCTAGAAGGGGTTTGGTTG+TGG | 0.342961 | 8.3:-4603852 | None:intergenic |
| TGTTCCTCTGAATAAATTCC+AGG | 0.349073 | 8.3:-4603520 | None:intergenic |
| GTTGGTCGTGCATCCCATTC+TGG | 0.363613 | 8.3:+4603616 | MS.gene012217:CDS |
| TTGAAGTTTGCAATCTTGTA+AGG | 0.367147 | 8.3:-4602509 | None:intergenic |
| TGTGCAGTGGTGGATATAAT+AGG | 0.370705 | 8.3:+4604596 | MS.gene012217:CDS |
| GTGGTAAGCGCTCGAGGCTC+CGG | 0.373825 | 8.3:-4603917 | None:intergenic |
| GGTGGATATAATAGGAAGTT+AGG | 0.374612 | 8.3:+4604604 | MS.gene012217:CDS |
| GAATTCTCCACCTCTCTAGA+AGG | 0.384447 | 8.3:-4603865 | None:intergenic |
| ATTGATCAATTCTTGAAAGA+TGG | 0.389055 | 8.3:+4604229 | MS.gene012217:CDS |
| CGCAGGTTTCCCCATGTACC+TGG | 0.393784 | 8.3:+4603502 | MS.gene012217:intron |
| GAACCTAAGAAAAGCTTATG+AGG | 0.420831 | 8.3:+4604564 | MS.gene012217:CDS |
| CTGAATAAATTCCAGGTACA+TGG | 0.427423 | 8.3:-4603513 | None:intergenic |
| AATGATCGAACAGACGAGTA+TGG | 0.441181 | 8.3:+4604256 | MS.gene012217:CDS |
| TATTCAGCAAGTGCTGCGTT+TGG | 0.442605 | 8.3:-4602675 | None:intergenic |
| AACGCTCTGCATCTCGTCAT+AGG | 0.445839 | 8.3:-4602642 | None:intergenic |
| ATTGGAGTGCAGGGTGGTGT+TGG | 0.449570 | 8.3:+4602617 | MS.gene012217:intron |
| GTAATTCCAAAATTACTAAA+GGG | 0.457004 | 8.3:-4605072 | None:intergenic |
| GCTATTAATGCGATTCGAGC+AGG | 0.471945 | 8.3:+4603980 | MS.gene012217:CDS |
| TTGATCAATTCTTGAAAGAT+GGG | 0.478672 | 8.3:+4604230 | MS.gene012217:CDS |
| CTCAAGCCAGATGGTTCCTA+TGG | 0.479424 | 8.3:+4603887 | MS.gene012217:CDS |
| ACAAAAGATAATGCTGCCTT+TGG | 0.485408 | 8.3:-4603581 | None:intergenic |
| AGGTTGAGTAACATGAAGAT+AGG | 0.492670 | 8.3:-4604479 | None:intergenic |
| GAAACTGAGGTTACCAGAAT+GGG | 0.497238 | 8.3:-4603629 | None:intergenic |
| AGGCTCCGGGTATGCGCCAT+AGG | 0.499161 | 8.3:-4603903 | None:intergenic |
| GGTTTGGTTGTGGATGAAAT+GGG | 0.499316 | 8.3:-4603842 | None:intergenic |
| TTGATGGAGTCGAAATTCAC+GGG | 0.503324 | 8.3:+4604191 | MS.gene012217:CDS |
| GCATCATTGTGATCAATTGC+TGG | 0.504056 | 8.3:-4604373 | None:intergenic |
| TGAAACTGAGGTTACCAGAA+TGG | 0.512235 | 8.3:-4603630 | None:intergenic |
| TTTGATGGAGTCGAAATTCA+CGG | 0.512397 | 8.3:+4604190 | MS.gene012217:CDS |
| AGGAGAAAAGAGGGTGGTGC+TGG | 0.515328 | 8.3:-4602489 | None:intergenic |
| TGGTAAGCGCTCGAGGCTCC+GGG | 0.517375 | 8.3:-4603916 | None:intergenic |
| CCCATAAGCAGTGGGAGAGA+TGG | 0.517721 | 8.3:-4602748 | None:intergenic |
| CAATCTTGTAAGGAGAAAAG+AGG | 0.521873 | 8.3:-4602499 | None:intergenic |
| GAATCGCATTAATAGCTGAT+TGG | 0.525902 | 8.3:-4603973 | None:intergenic |
| GCTATTGATTCTGATCCACT+TGG | 0.530394 | 8.3:+4604394 | MS.gene012217:CDS |
| TATGCGCCATAGGAACCATC+TGG | 0.531081 | 8.3:-4603893 | None:intergenic |
| GTCGAAATTCACGGGGCACA+CGG | 0.533112 | 8.3:+4604199 | MS.gene012217:CDS |
| ACGAGATGCAGAGCGTTGAA+TGG | 0.535942 | 8.3:+4602648 | MS.gene012217:CDS |
| AATTCTCCACCTCTCTAGAA+GGG | 0.550426 | 8.3:-4603864 | None:intergenic |
| TCGAAATTCACGGGGCACAC+GGG | 0.550944 | 8.3:+4604200 | MS.gene012217:CDS |
| TGAATAAATTCCAGGTACAT+GGG | 0.553359 | 8.3:-4603512 | None:intergenic |
| TGGTTCCTATGGCGCATACC+CGG | 0.554696 | 8.3:+4603898 | MS.gene012217:CDS |
| GTATGACAAGGAAGAAGAAG+AGG | 0.555686 | 8.3:+4604528 | MS.gene012217:CDS |
| GAAATGGGTGCAGCACCACC+AGG | 0.555752 | 8.3:-4603827 | None:intergenic |
| CAGAGGAACAAGTGGAGGCA+TGG | 0.561445 | 8.3:+4603533 | MS.gene012217:CDS |
| GGTGGATTTCTCATCGGTGA+AGG | 0.575119 | 8.3:+4602720 | MS.gene012217:CDS |
| GATCACTTGAAAATCGATGC+AGG | 0.580483 | 8.3:+4604281 | MS.gene012217:CDS |
| ATTATATACCCATAAGCAGT+GGG | 0.587040 | 8.3:-4602756 | None:intergenic |
| ATGCAGGTTCTTAATTCAGG+TGG | 0.588415 | 8.3:+4604297 | MS.gene012217:CDS |
| TCAGAAGTGGTAAGCGCTCG+AGG | 0.590830 | 8.3:-4603923 | None:intergenic |
| ATATAATAGGAAGTTAGGAA+TGG | 0.592051 | 8.3:+4604609 | MS.gene012217:CDS |
| GGAATGGAAGCTGTAGCTCA+AGG | 0.592444 | 8.3:+4604625 | MS.gene012217:CDS |
| CCAAACCCCTTCTAGAGAGG+TGG | 0.592960 | 8.3:+4603858 | MS.gene012217:CDS |
| AGTTCAACAACACAAGTACA+AGG | 0.594788 | 8.3:+4602461 | MS.gene012217:CDS |
| TATTTCTGGTATCTCAGAAG+TGG | 0.602504 | 8.3:-4603936 | None:intergenic |
| TACGCTCAAAGATCAACTCC+AGG | 0.602812 | 8.3:+4602699 | MS.gene012217:CDS |
| GGAACATTCATGTGCAGTGG+TGG | 0.609749 | 8.3:+4604586 | MS.gene012217:CDS |
| TTATTCAGAGGAACAAGTGG+AGG | 0.610128 | 8.3:+4603528 | MS.gene012217:CDS |
| AATTTATTCAGAGGAACAAG+TGG | 0.610952 | 8.3:+4603525 | MS.gene012217:CDS |
| TTTCCATAAGCTGTATATCG+AGG | 0.611276 | 8.3:-4604499 | None:intergenic |
| ATAAGCAGTGGGAGAGATGG+AGG | 0.611650 | 8.3:-4602745 | None:intergenic |
| AAGAAGAGGCTCATTTGATG+AGG | 0.613862 | 8.3:+4604542 | MS.gene012217:CDS |
| CAACCAAACCCCTTCTAGAG+AGG | 0.615926 | 8.3:+4603855 | MS.gene012217:CDS |
| ATTCTCCACCTCTCTAGAAG+GGG | 0.617495 | 8.3:-4603863 | None:intergenic |
| AACCTAAGAAAAGCTTATGA+GGG | 0.618035 | 8.3:+4604565 | MS.gene012217:CDS |
| TGGAGAATTCTCAAGCCAGA+TGG | 0.619198 | 8.3:+4603878 | MS.gene012217:CDS |
| GGTATTGGAGCTGAAAGAGT+TGG | 0.624730 | 8.3:+4604337 | MS.gene012217:CDS |
| GAATAAATTCCAGGTACATG+GGG | 0.626230 | 8.3:-4603511 | None:intergenic |
| ACTCCAGGTGGATTTCTCAT+CGG | 0.631444 | 8.3:+4602714 | MS.gene012217:CDS |
| AATTATATACCCATAAGCAG+TGG | 0.632930 | 8.3:-4602757 | None:intergenic |
| ACTGCTAAGCCTAATCCAAG+TGG | 0.645958 | 8.3:-4604409 | None:intergenic |
| AGCTCCAATACCAGAAACAA+CGG | 0.648152 | 8.3:-4604326 | None:intergenic |
| TGTGAAGCAGTGTATCAGCC+TGG | 0.649524 | 8.3:+4603809 | MS.gene012217:intron |
| GTGGATGCTGCTCATGCCAA+AGG | 0.652152 | 8.3:+4603565 | MS.gene012217:CDS |
| GATCGAACAGACGAGTATGG+TGG | 0.652328 | 8.3:+4604259 | MS.gene012217:CDS |
| TGAGATACCAGAAATAGTCA+AGG | 0.658712 | 8.3:+4603943 | MS.gene012217:CDS |
| TGTACCTGGAATTTATTCAG+AGG | 0.660053 | 8.3:+4603516 | MS.gene012217:CDS |
| TCACCGATGAGAAATCCACC+TGG | 0.665351 | 8.3:-4602717 | None:intergenic |
| AATCTTGTAAGGAGAAAAGA+GGG | 0.669109 | 8.3:-4602498 | None:intergenic |
| GGAGGCATGGAGAAATGTCG+TGG | 0.680628 | 8.3:+4603546 | MS.gene012217:CDS |
| GCTCAAAGATCAACTCCAGG+TGG | 0.683876 | 8.3:+4602702 | MS.gene012217:CDS |
| GAGGGAACATTCATGTGCAG+TGG | 0.698747 | 8.3:+4604583 | MS.gene012217:CDS |
| TGATGGAGTCGAAATTCACG+GGG | 0.717446 | 8.3:+4604192 | MS.gene012217:CDS |
| GAAGCAGTGTATCAGCCTGG+TGG | 0.735693 | 8.3:+4603812 | MS.gene012217:intron |
| CTTGTAAGGAGAAAAGAGGG+TGG | 0.760384 | 8.3:-4602495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGAAAATATTACATTA+TGG | + | chr8.3:4603454-4603473 | MS.gene012217:intron | 10.0% |
| !!! | AAATTTGGATTATTTTTTTA+AGG | - | chr8.3:4602928-4602947 | None:intergenic | 10.0% |
| !!! | TGTAATATTTTCATATATTT+AGG | - | chr8.3:4603451-4603470 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTACCATTT+TGG | + | chr8.3:4604863-4604882 | MS.gene012217:intron | 10.0% |
| !! | AAACAGTTATAAAGTAATAA+AGG | + | chr8.3:4602985-4603004 | MS.gene012217:intron | 15.0% |
| !! | AGTACATAAAACTAAATAAA+CGG | + | chr8.3:4603223-4603242 | MS.gene012217:intron | 15.0% |
| !! | TATATAAAAGAAATATAGGA+CGG | + | chr8.3:4603061-4603080 | MS.gene012217:intron | 15.0% |
| !!! | ATAAAGTAATAAAGGTATAT+TGG | + | chr8.3:4602993-4603012 | MS.gene012217:intron | 15.0% |
| !!! | TATTTTCATATATTTAGGAT+TGG | - | chr8.3:4603446-4603465 | None:intergenic | 15.0% |
| !! | AAATAATATTATGTTGATGC+TGG | + | chr8.3:4602881-4602900 | MS.gene012217:intron | 20.0% |
| !! | AAATGTAATCTTATATATCG+TGG | + | chr8.3:4604940-4604959 | MS.gene012217:intron | 20.0% |
| !! | ACATTATGGTATTGTAATAT+AGG | + | chr8.3:4603468-4603487 | MS.gene012217:intron | 20.0% |
| !! | ATACATCTAACAATCAAATT+TGG | - | chr8.3:4602943-4602962 | None:intergenic | 20.0% |
| !! | CATTATGGTATTGTAATATA+GGG | + | chr8.3:4603469-4603488 | MS.gene012217:intron | 20.0% |
| !!! | TTTATCCTTTGAAATTTGTA+AGG | - | chr8.3:4603038-4603057 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTGTTATTGT+GGG | + | chr8.3:4602568-4602587 | MS.gene012217:intron | 20.0% |
| ! | AAAGAAAAAGCTTGAAAAAG+AGG | - | chr8.3:4602783-4602802 | None:intergenic | 25.0% |
| ! | ATATAATAGGAAGTTAGGAA+TGG | + | chr8.3:4604609-4604628 | MS.gene012217:CDS | 25.0% |
| ! | ATTGATCAATTCTTGAAAGA+TGG | + | chr8.3:4604229-4604248 | MS.gene012217:CDS | 25.0% |
| ! | ATTGTCCTTACAAATTTCAA+AGG | + | chr8.3:4603030-4603049 | MS.gene012217:intron | 25.0% |
| ! | CAAAACATTCTCTTAAGATT+TGG | - | chr8.3:4604915-4604934 | None:intergenic | 25.0% |
| ! | CTCACAAACATAAAATAGTA+AGG | - | chr8.3:4604048-4604067 | None:intergenic | 25.0% |
| ! | GACATCAATGAATATAAGTT+AGG | - | chr8.3:4602834-4602853 | None:intergenic | 25.0% |
| ! | TATTTGTTTACATCTCTTCA+AGG | + | chr8.3:4604008-4604027 | MS.gene012217:intron | 25.0% |
| ! | TGTATGTTGGTATTTACTAT+TGG | + | chr8.3:4602958-4602977 | MS.gene012217:intron | 25.0% |
| ! | TTAAACCTTAAAACCAAATC+TGG | - | chr8.3:4604694-4604713 | None:intergenic | 25.0% |
| ! | TTCACAATTAAATCATTGAG+TGG | - | chr8.3:4603795-4603814 | None:intergenic | 25.0% |
| ! | TTGATCAATTCTTGAAAGAT+GGG | + | chr8.3:4604230-4604249 | MS.gene012217:CDS | 25.0% |
| ! | TTGTAATATAGGGAAATGTT+TGG | + | chr8.3:4603479-4603498 | MS.gene012217:intron | 25.0% |
| ! | TTTGATTGTTAGATGTATGT+TGG | + | chr8.3:4602945-4602964 | MS.gene012217:intron | 25.0% |
| !!! | GTTTTTTTTCTCTGTTATTG+TGG | + | chr8.3:4602567-4602586 | MS.gene012217:intron | 25.0% |
| AACCTAAGAAAAGCTTATGA+GGG | + | chr8.3:4604565-4604584 | MS.gene012217:CDS | 30.0% | |
| AATCTTGTAAGGAGAAAAGA+GGG | - | chr8.3:4602501-4602520 | None:intergenic | 30.0% | |
| AATTATATACCCATAAGCAG+TGG | - | chr8.3:4602760-4602779 | None:intergenic | 30.0% | |
| AATTTATTCAGAGGAACAAG+TGG | + | chr8.3:4603525-4603544 | MS.gene012217:CDS | 30.0% | |
| ATTATATACCCATAAGCAGT+GGG | - | chr8.3:4602759-4602778 | None:intergenic | 30.0% | |
| GAAGGAAAAACAACAATCAA+AGG | - | chr8.3:4604837-4604856 | None:intergenic | 30.0% | |
| GAATAGTACTAAAACCATGT+AGG | - | chr8.3:4603262-4603281 | None:intergenic | 30.0% | |
| TGAATAAATTCCAGGTACAT+GGG | - | chr8.3:4603515-4603534 | None:intergenic | 30.0% | |
| TTCGTACAACAAAACCAAAA+TGG | - | chr8.3:4604880-4604899 | None:intergenic | 30.0% | |
| TTGAAGTTTGCAATCTTGTA+AGG | - | chr8.3:4602512-4602531 | None:intergenic | 30.0% | |
| TTTCATCTCTAATCCAGATT+TGG | + | chr8.3:4604678-4604697 | MS.gene012217:intron | 30.0% | |
| ! | CAAACTTCAACTTTTCTCAT+AGG | + | chr8.3:4602522-4602541 | MS.gene012217:CDS | 30.0% |
| ! | GCATTATCTTTTGTCAGTTA+TGG | + | chr8.3:4603590-4603609 | MS.gene012217:CDS | 30.0% |
| ! | GTTTTCAATGCAGTTCATTA+AGG | - | chr8.3:4603682-4603701 | None:intergenic | 30.0% |
| !!! | CTAATCCAGATTTGGTTTTA+AGG | + | chr8.3:4604686-4604705 | MS.gene012217:intron | 30.0% |
| AACAATCTCCAAAAAGAGCT+TGG | + | chr8.3:4604445-4604464 | MS.gene012217:CDS | 35.0% | |
| AAGTTGCGACAAATGAATCA+AGG | - | chr8.3:4603160-4603179 | None:intergenic | 35.0% | |
| ACAAAAGATAATGCTGCCTT+TGG | - | chr8.3:4603584-4603603 | None:intergenic | 35.0% | |
| ACTATGATCTGATGTGGTTA+TGG | + | chr8.3:4602593-4602612 | MS.gene012217:intron | 35.0% | |
| AGGTTGAGTAACATGAAGAT+AGG | - | chr8.3:4604482-4604501 | None:intergenic | 35.0% | |
| AGTTCAACAACACAAGTACA+AGG | + | chr8.3:4602461-4602480 | MS.gene012217:CDS | 35.0% | |
| AGTTGCGACAAATGAATCAA+GGG | - | chr8.3:4603159-4603178 | None:intergenic | 35.0% | |
| ATCAACGACAAAAAGAACAC+AGG | - | chr8.3:4603340-4603359 | None:intergenic | 35.0% | |
| ATCTGATGTGGTTATGGTAT+TGG | + | chr8.3:4602599-4602618 | MS.gene012217:intron | 35.0% | |
| ATGAAATGAGACGTACATAC+AGG | + | chr8.3:4604166-4604185 | MS.gene012217:intron | 35.0% | |
| CAATCTTGTAAGGAGAAAAG+AGG | - | chr8.3:4602502-4602521 | None:intergenic | 35.0% | |
| CGATAATCCTTGACTATTTC+TGG | - | chr8.3:4603953-4603972 | None:intergenic | 35.0% | |
| CTGAATAAATTCCAGGTACA+TGG | - | chr8.3:4603516-4603535 | None:intergenic | 35.0% | |
| GAACCTAAGAAAAGCTTATG+AGG | + | chr8.3:4604564-4604583 | MS.gene012217:CDS | 35.0% | |
| GAATAAATTCCAGGTACATG+GGG | - | chr8.3:4603514-4603533 | None:intergenic | 35.0% | |
| GAATCGCATTAATAGCTGAT+TGG | - | chr8.3:4603976-4603995 | None:intergenic | 35.0% | |
| GGTGGATATAATAGGAAGTT+AGG | + | chr8.3:4604604-4604623 | MS.gene012217:CDS | 35.0% | |
| GTCAAACAAAAAGTCCTACA+TGG | + | chr8.3:4603245-4603264 | MS.gene012217:intron | 35.0% | |
| TGAGATACCAGAAATAGTCA+AGG | + | chr8.3:4603943-4603962 | MS.gene012217:CDS | 35.0% | |
| TGGAAAAACTGAGTATGACA+AGG | + | chr8.3:4604516-4604535 | MS.gene012217:CDS | 35.0% | |
| TGTACCTGGAATTTATTCAG+AGG | + | chr8.3:4603516-4603535 | MS.gene012217:CDS | 35.0% | |
| TGTTCCTCTGAATAAATTCC+AGG | - | chr8.3:4603523-4603542 | None:intergenic | 35.0% | |
| TTAAACACAATCAGCCTCAT+TGG | - | chr8.3:4603297-4603316 | None:intergenic | 35.0% | |
| TTCCTGTTATACTTGTTCAG+AGG | - | chr8.3:4604727-4604746 | None:intergenic | 35.0% | |
| TTTCCATAAGCTGTATATCG+AGG | - | chr8.3:4604502-4604521 | None:intergenic | 35.0% | |
| TTTGATGGAGTCGAAATTCA+CGG | + | chr8.3:4604190-4604209 | MS.gene012217:CDS | 35.0% | |
| TTTGGTGAGGAAAGGATAAT+CGG | - | chr8.3:4604785-4604804 | None:intergenic | 35.0% | |
| ! | CATGCATCTGATTTTGTCAA+TGG | + | chr8.3:4603126-4603145 | MS.gene012217:intron | 35.0% |
| ! | CATTTAGGATAGTGAAACTG+AGG | - | chr8.3:4603645-4603664 | None:intergenic | 35.0% |
| ! | GATGAACTTGTGAAGCATTT+AGG | - | chr8.3:4603660-4603679 | None:intergenic | 35.0% |
| ! | GTTTTCTACCAAGCTCTTTT+TGG | - | chr8.3:4604456-4604475 | None:intergenic | 35.0% |
| ! | TTCCCTCATAAGCTTTTCTT+AGG | - | chr8.3:4604570-4604589 | None:intergenic | 35.0% |
| ! | TTTTGTCAGTTATGGCATGT+TGG | + | chr8.3:4603598-4603617 | MS.gene012217:CDS | 35.0% |
| !! | GATGCTGATTTGGTATCATT+TGG | + | chr8.3:4604649-4604668 | MS.gene012217:intron | 35.0% |
| !! | TATTTCTGGTATCTCAGAAG+TGG | - | chr8.3:4603939-4603958 | None:intergenic | 35.0% |
| !!! | GGTTTTGTTGTACGAACAAT+TGG | + | chr8.3:4604884-4604903 | MS.gene012217:intron | 35.0% |
| AAGAAGAGGCTCATTTGATG+AGG | + | chr8.3:4604542-4604561 | MS.gene012217:CDS | 40.0% | |
| AATGATCGAACAGACGAGTA+TGG | + | chr8.3:4604256-4604275 | MS.gene012217:CDS | 40.0% | |
| AGCTCCAATACCAGAAACAA+CGG | - | chr8.3:4604329-4604348 | None:intergenic | 40.0% | |
| ATGCAGGTTCTTAATTCAGG+TGG | + | chr8.3:4604297-4604316 | MS.gene012217:CDS | 40.0% | |
| CAACCTCGATATACAGCTTA+TGG | + | chr8.3:4604496-4604515 | MS.gene012217:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr8.3:4604722-4604741 | MS.gene012217:intron | 40.0% | |
| CTCTTGAGTCTCATTTCCTT+TGG | - | chr8.3:4604803-4604822 | None:intergenic | 40.0% | |
| GAAACTGAGGTTACCAGAAT+GGG | - | chr8.3:4603632-4603651 | None:intergenic | 40.0% | |
| GATCACTTGAAAATCGATGC+AGG | + | chr8.3:4604281-4604300 | MS.gene012217:CDS | 40.0% | |
| GATTATCCTTTCCTCACCAA+AGG | + | chr8.3:4604784-4604803 | MS.gene012217:intron | 40.0% | |
| GATTCTGATCCACTTGGATT+AGG | + | chr8.3:4604400-4604419 | MS.gene012217:CDS | 40.0% | |
| GCATCATTGTGATCAATTGC+TGG | - | chr8.3:4604376-4604395 | None:intergenic | 40.0% | |
| GGTTCTTAATTCAGGTGGTT+CGG | + | chr8.3:4604302-4604321 | MS.gene012217:CDS | 40.0% | |
| GTATGACAAGGAAGAAGAAG+AGG | + | chr8.3:4604528-4604547 | MS.gene012217:CDS | 40.0% | |
| GTTCTTAATTCAGGTGGTTC+GGG | + | chr8.3:4604303-4604322 | MS.gene012217:CDS | 40.0% | |
| TAATCGGTGTAGCCAATAAC+AGG | - | chr8.3:4604769-4604788 | None:intergenic | 40.0% | |
| TACACACAGGATCCTGTTAT+TGG | + | chr8.3:4604754-4604773 | MS.gene012217:intron | 40.0% | |
| TCATTTCCTTTGGTGAGGAA+AGG | - | chr8.3:4604793-4604812 | None:intergenic | 40.0% | |
| TCGATGCAGGTTCTTAATTC+AGG | + | chr8.3:4604294-4604313 | MS.gene012217:CDS | 40.0% | |
| TGAAACTGAGGTTACCAGAA+TGG | - | chr8.3:4603633-4603652 | None:intergenic | 40.0% | |
| TTATTCAGAGGAACAAGTGG+AGG | + | chr8.3:4603528-4603547 | MS.gene012217:CDS | 40.0% | |
| TTGATGGAGTCGAAATTCAC+GGG | + | chr8.3:4604191-4604210 | MS.gene012217:CDS | 40.0% | |
| ! | AATTCTCCACCTCTCTAGAA+GGG | - | chr8.3:4603867-4603886 | None:intergenic | 40.0% |
| ! | CAGGAAGACATTTTACACAC+AGG | + | chr8.3:4604741-4604760 | MS.gene012217:intron | 40.0% |
| ! | CATCTGATTTTGTCAATGGC+CGG | + | chr8.3:4603130-4603149 | MS.gene012217:intron | 40.0% |
| ! | GGTTTGGTTGTGGATGAAAT+GGG | - | chr8.3:4603845-4603864 | None:intergenic | 40.0% |
| !! | GACGTACATACAGGTTTTGA+TGG | + | chr8.3:4604175-4604194 | MS.gene012217:intron | 40.0% |
| !! | GCTATTGATTCTGATCCACT+TGG | + | chr8.3:4604394-4604413 | MS.gene012217:CDS | 40.0% |
| !! | TGTGCAGTGGTGGATATAAT+AGG | + | chr8.3:4604596-4604615 | MS.gene012217:CDS | 40.0% |
| ACAAATGAATCAAGGGTGGC+CGG | - | chr8.3:4603152-4603171 | None:intergenic | 45.0% | |
| ACACAATCAGCCTCATTGGT+TGG | - | chr8.3:4603293-4603312 | None:intergenic | 45.0% | |
| ACTGCTAAGCCTAATCCAAG+TGG | - | chr8.3:4604412-4604431 | None:intergenic | 45.0% | |
| ATACTCGTGTTGCATCTGCA+CGG | + | chr8.3:4604092-4604111 | MS.gene012217:intron | 45.0% | |
| CTTGTAAGGAGAAAAGAGGG+TGG | - | chr8.3:4602498-4602517 | None:intergenic | 45.0% | |
| GAATTCTCCACCTCTCTAGA+AGG | - | chr8.3:4603868-4603887 | None:intergenic | 45.0% | |
| GAGTCTCATTTCCTTTGGTG+AGG | - | chr8.3:4604798-4604817 | None:intergenic | 45.0% | |
| GCTATTAATGCGATTCGAGC+AGG | + | chr8.3:4603980-4603999 | MS.gene012217:CDS | 45.0% | |
| TACGCTCAAAGATCAACTCC+AGG | + | chr8.3:4602699-4602718 | MS.gene012217:CDS | 45.0% | |
| TATAGGGAAATGTTTGGCGC+AGG | + | chr8.3:4603485-4603504 | MS.gene012217:intron | 45.0% | |
| TCTATCGCTACCAACCAATG+AGG | + | chr8.3:4603280-4603299 | MS.gene012217:intron | 45.0% | |
| TGATGGAGTCGAAATTCACG+GGG | + | chr8.3:4604192-4604211 | MS.gene012217:CDS | 45.0% | |
| TGCGACAAATGAATCAAGGG+TGG | - | chr8.3:4603156-4603175 | None:intergenic | 45.0% | |
| TGGAGAATTCTCAAGCCAGA+TGG | + | chr8.3:4603878-4603897 | MS.gene012217:CDS | 45.0% | |
| TGGGTGACTATGATCTGATG+TGG | + | chr8.3:4602587-4602606 | MS.gene012217:intron | 45.0% | |
| ! | ACTCCAGGTGGATTTCTCAT+CGG | + | chr8.3:4602714-4602733 | MS.gene012217:CDS | 45.0% |
| ! | AGCTCAAGGTGATGCTGATT+TGG | + | chr8.3:4604639-4604658 | MS.gene012217:intron | 45.0% |
| ! | ATTCTCCACCTCTCTAGAAG+GGG | - | chr8.3:4603866-4603885 | None:intergenic | 45.0% |
| ! | GGGTTTGGTTGTGGATGAAA+TGG | - | chr8.3:4603846-4603865 | None:intergenic | 45.0% |
| ! | GGTATTGGAGCTGAAAGAGT+TGG | + | chr8.3:4604337-4604356 | MS.gene012217:CDS | 45.0% |
| ! | GGTTATGGTATTGGAGTGCA+GGG | + | chr8.3:4602608-4602627 | MS.gene012217:intron | 45.0% |
| ! | TATTCAGCAAGTGCTGCGTT+TGG | - | chr8.3:4602678-4602697 | None:intergenic | 45.0% |
| ! | TGGTTATGGTATTGGAGTGC+AGG | + | chr8.3:4602607-4602626 | MS.gene012217:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAGA+AGG | - | chr8.3:4604855-4604874 | None:intergenic | 5.0% |
| !! | AAAATATATAAAAGAAATAT+AGG | + | chr8.3:4603057-4603076 | MS.gene012217:intron | 5.0% |
| AACGCTCTGCATCTCGTCAT+AGG | - | chr8.3:4602645-4602664 | None:intergenic | 50.0% | |
| ATAAGCAGTGGGAGAGATGG+AGG | - | chr8.3:4602748-4602767 | None:intergenic | 50.0% | |
| CCATCTCTCCCACTGCTTAT+GGG | + | chr8.3:4602748-4602767 | MS.gene012217:CDS | 50.0% | |
| CTCAAGCCAGATGGTTCCTA+TGG | + | chr8.3:4603887-4603906 | MS.gene012217:CDS | 50.0% | |
| GAGGGAACATTCATGTGCAG+TGG | + | chr8.3:4604583-4604602 | MS.gene012217:CDS | 50.0% | |
| GATCGAACAGACGAGTATGG+TGG | + | chr8.3:4604259-4604278 | MS.gene012217:CDS | 50.0% | |
| GCTCAAAGATCAACTCCAGG+TGG | + | chr8.3:4602702-4602721 | MS.gene012217:CDS | 50.0% | |
| GGAACATTCATGTGCAGTGG+TGG | + | chr8.3:4604586-4604605 | MS.gene012217:CDS | 50.0% | |
| GGAATGGAAGCTGTAGCTCA+AGG | + | chr8.3:4604625-4604644 | MS.gene012217:CDS | 50.0% | |
| GTGCAGATGCAACACGAGTA+TGG | - | chr8.3:4604093-4604112 | None:intergenic | 50.0% | |
| TACTCGTGTTGCATCTGCAC+GGG | + | chr8.3:4604093-4604112 | MS.gene012217:intron | 50.0% | |
| TATGCGCCATAGGAACCATC+TGG | - | chr8.3:4603896-4603915 | None:intergenic | 50.0% | |
| TCACCGATGAGAAATCCACC+TGG | - | chr8.3:4602720-4602739 | None:intergenic | 50.0% | |
| TCCATCTCTCCCACTGCTTA+TGG | + | chr8.3:4602747-4602766 | MS.gene012217:CDS | 50.0% | |
| TGTGAAGCAGTGTATCAGCC+TGG | + | chr8.3:4603809-4603828 | MS.gene012217:intron | 50.0% | |
| TGTTGCATCTGCACGGGTAT+GGG | + | chr8.3:4604099-4604118 | MS.gene012217:intron | 50.0% | |
| ! | CAACCAAACCCCTTCTAGAG+AGG | + | chr8.3:4603855-4603874 | MS.gene012217:CDS | 50.0% |
| ! | CTCTAGAAGGGGTTTGGTTG+TGG | - | chr8.3:4603855-4603874 | None:intergenic | 50.0% |
| ! | GGTGGATTTCTCATCGGTGA+AGG | + | chr8.3:4602720-4602739 | MS.gene012217:CDS | 50.0% |
| ! | TATGGTATTGGAGTGCAGGG+TGG | + | chr8.3:4602611-4602630 | MS.gene012217:intron | 50.0% |
| !! | ACGAGATGCAGAGCGTTGAA+TGG | + | chr8.3:4602648-4602667 | MS.gene012217:CDS | 50.0% |
| AGGAGAAAAGAGGGTGGTGC+TGG | - | chr8.3:4602492-4602511 | None:intergenic | 55.0% | |
| ATTGGAGTGCAGGGTGGTGT+TGG | + | chr8.3:4602617-4602636 | MS.gene012217:intron | 55.0% | |
| CAGAGGAACAAGTGGAGGCA+TGG | + | chr8.3:4603533-4603552 | MS.gene012217:CDS | 55.0% | |
| CCCATAAGCAGTGGGAGAGA+TGG | - | chr8.3:4602751-4602770 | None:intergenic | 55.0% | |
| GAAGCAGTGTATCAGCCTGG+TGG | + | chr8.3:4603812-4603831 | MS.gene012217:intron | 55.0% | |
| GTCGAAATTCACGGGGCACA+CGG | + | chr8.3:4604199-4604218 | MS.gene012217:CDS | 55.0% | |
| GTGGATGCTGCTCATGCCAA+AGG | + | chr8.3:4603565-4603584 | MS.gene012217:CDS | 55.0% | |
| GTGTTGCATCTGCACGGGTA+TGG | + | chr8.3:4604098-4604117 | MS.gene012217:intron | 55.0% | |
| GTTGGTCGTGCATCCCATTC+TGG | + | chr8.3:4603616-4603635 | MS.gene012217:CDS | 55.0% | |
| TCAGAAGTGGTAAGCGCTCG+AGG | - | chr8.3:4603926-4603945 | None:intergenic | 55.0% | |
| TCGAAATTCACGGGGCACAC+GGG | + | chr8.3:4604200-4604219 | MS.gene012217:CDS | 55.0% | |
| TGGTTCCTATGGCGCATACC+CGG | + | chr8.3:4603898-4603917 | MS.gene012217:CDS | 55.0% | |
| ! | CCAAACCCCTTCTAGAGAGG+TGG | + | chr8.3:4603858-4603877 | MS.gene012217:CDS | 55.0% |
| ! | CCACCTCTCTAGAAGGGGTT+TGG | - | chr8.3:4603861-4603880 | None:intergenic | 55.0% |
| ! | GGAGGCATGGAGAAATGTCG+TGG | + | chr8.3:4603546-4603565 | MS.gene012217:CDS | 55.0% |
| !! | CGGGCCGTTGTTTCTGGTAT+TGG | + | chr8.3:4604322-4604341 | MS.gene012217:CDS | 55.0% |
| CGCAGGTTTCCCCATGTACC+TGG | + | chr8.3:4603502-4603521 | MS.gene012217:intron | 60.0% | |
| GAAATGGGTGCAGCACCACC+AGG | - | chr8.3:4603830-4603849 | None:intergenic | 60.0% | |
| ! | GTGGTTCGGGCCGTTGTTTC+TGG | + | chr8.3:4604316-4604335 | MS.gene012217:CDS | 60.0% |
| AGGCTCCGGGTATGCGCCAT+AGG | - | chr8.3:4603906-4603925 | None:intergenic | 65.0% | |
| GTGGTAAGCGCTCGAGGCTC+CGG | - | chr8.3:4603920-4603939 | None:intergenic | 65.0% | |
| TGGTAAGCGCTCGAGGCTCC+GGG | - | chr8.3:4603919-4603938 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 4602440 | 4605079 | 4602440 | ID=MS.gene012217 |
| chr8.3 | mRNA | 4602440 | 4605079 | 4602440 | ID=MS.gene012217.t1;Parent=MS.gene012217 |
| chr8.3 | exon | 4602440 | 4602543 | 4602440 | ID=MS.gene012217.t1.exon1;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4602440 | 4602543 | 4602440 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| chr8.3 | exon | 4602629 | 4602769 | 4602629 | ID=MS.gene012217.t1.exon2;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4602629 | 4602769 | 4602629 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| chr8.3 | exon | 4603507 | 4603637 | 4603507 | ID=MS.gene012217.t1.exon3;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4603507 | 4603637 | 4603507 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| chr8.3 | exon | 4603819 | 4604001 | 4603819 | ID=MS.gene012217.t1.exon4;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4603819 | 4604001 | 4603819 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| chr8.3 | exon | 4604188 | 4604646 | 4604188 | ID=MS.gene012217.t1.exon5;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4604188 | 4604646 | 4604188 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| chr8.3 | exon | 4605066 | 4605079 | 4605066 | ID=MS.gene012217.t1.exon6;Parent=MS.gene012217.t1 |
| chr8.3 | CDS | 4605066 | 4605079 | 4605066 | ID=cds.MS.gene012217.t1;Parent=MS.gene012217.t1 |
| Gene Sequence |
| Protein sequence |
