Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001056.t1 | XP_003610767.1 | 97 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 2.40E-213 | 751.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001056.t1 | B9FSC8 | 77.5 | 364 | 80 | 1 | 7 | 370 | 2 | 363 | 1.3e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001056.t1 | G7K3S2 | 97.0 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 1.7e-213 | 751.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001056.t1 | MTR_5g006780 | 97.035 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 0.0 | 752 |
| MS.gene001056.t1 | MTR_5g006800 | 92.183 | 371 | 27 | 1 | 1 | 371 | 1 | 369 | 0.0 | 715 |
| MS.gene001056.t1 | MTR_5g006750 | 88.140 | 371 | 44 | 0 | 1 | 371 | 1 | 371 | 0.0 | 694 |
| MS.gene001056.t1 | MTR_5g006670 | 86.376 | 367 | 42 | 3 | 5 | 371 | 1 | 359 | 0.0 | 651 |
| MS.gene001056.t1 | MTR_5g006740 | 82.834 | 367 | 61 | 1 | 5 | 371 | 1 | 365 | 0.0 | 646 |
| MS.gene001056.t1 | MTR_5g006710 | 83.836 | 365 | 51 | 2 | 7 | 371 | 7 | 363 | 0.0 | 637 |
| MS.gene001056.t1 | MTR_5g008040 | 80.541 | 370 | 70 | 1 | 1 | 370 | 3 | 370 | 0.0 | 628 |
| MS.gene001056.t1 | MTR_5g006740 | 78.747 | 367 | 59 | 2 | 5 | 371 | 1 | 348 | 0.0 | 598 |
| MS.gene001056.t1 | MTR_5g006720 | 73.351 | 379 | 61 | 3 | 4 | 371 | 3 | 352 | 0.0 | 558 |
| MS.gene001056.t1 | MTR_3g115600 | 69.505 | 364 | 105 | 2 | 8 | 371 | 6 | 363 | 0.0 | 533 |
| MS.gene001056.t1 | MTR_4g125470 | 52.815 | 373 | 159 | 5 | 12 | 370 | 19 | 388 | 2.31e-138 | 400 |
| MS.gene001056.t1 | MTR_5g006730 | 77.311 | 119 | 25 | 1 | 1 | 119 | 1 | 117 | 1.09e-59 | 189 |
| MS.gene001056.t1 | MTR_3g096570 | 73.494 | 83 | 18 | 2 | 173 | 254 | 3 | 82 | 3.81e-32 | 122 |
| MS.gene001056.t1 | MTR_3g096562 | 67.045 | 88 | 26 | 1 | 167 | 254 | 162 | 246 | 3.00e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001056.t1 | AT1G76690 | 76.550 | 371 | 85 | 1 | 1 | 371 | 3 | 371 | 0.0 | 603 |
| MS.gene001056.t1 | AT1G76680 | 77.135 | 363 | 81 | 1 | 9 | 371 | 9 | 369 | 0.0 | 596 |
| MS.gene001056.t1 | AT1G76680 | 72.165 | 388 | 81 | 2 | 9 | 371 | 9 | 394 | 0.0 | 582 |
| MS.gene001056.t1 | AT1G09400 | 68.976 | 332 | 95 | 2 | 18 | 349 | 1 | 324 | 1.25e-174 | 489 |
| MS.gene001056.t1 | AT1G09400 | 70.741 | 270 | 73 | 1 | 80 | 349 | 2 | 265 | 3.45e-144 | 409 |
| MS.gene001056.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene001056.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene001056.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene001056.t1 | AT1G17990 | 70.385 | 260 | 70 | 3 | 9 | 268 | 6 | 258 | 4.61e-135 | 386 |
| MS.gene001056.t1 | AT1G18020 | 70.385 | 260 | 70 | 3 | 9 | 268 | 6 | 258 | 4.61e-135 | 386 |
| MS.gene001056.t1 | AT1G17990 | 67.308 | 260 | 70 | 4 | 9 | 268 | 6 | 250 | 2.51e-126 | 364 |
Find 108 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTACTCCTTACAAAA+TGG | 0.186312 | 5.4:+2377580 | MS.gene001056:CDS |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5.4:-2378895 | None:intergenic |
| GTTGGAAGAGTTTCTGATTC+TGG | 0.251518 | 5.4:+2377963 | MS.gene001056:CDS |
| TAACGAATTGGGACTTTATA+TGG | 0.259709 | 5.4:+2378648 | MS.gene001056:CDS |
| TACATTTCTGATCCAGTTCT+AGG | 0.288195 | 5.4:+2378958 | MS.gene001056:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5.4:+2377695 | MS.gene001056:intron |
| GTCAATGCCCTCAATAAATA+TGG | 0.304167 | 5.4:+2378670 | MS.gene001056:CDS |
| AAAGGCACTTTCATGGTTGC+AGG | 0.311740 | 5.4:+2378787 | MS.gene001056:CDS |
| CTCCTCTGAACAAGTATAAC+AGG | 0.317873 | 5.4:+2378926 | MS.gene001056:CDS |
| CTCATCGGCACAAGGCTGTC+GGG | 0.347385 | 5.4:-2378754 | None:intergenic |
| ATCCAGACACGCCAGGTATA+TGG | 0.350535 | 5.4:+2377856 | MS.gene001056:CDS |
| GTCCATATACCTGGCGTGTC+TGG | 0.353329 | 5.4:-2377858 | None:intergenic |
| TCAATGCCATAGCTGAAAAC+AGG | 0.384447 | 5.4:+2378833 | MS.gene001056:CDS |
| AGACTCCAACCCTAACGAAT+TGG | 0.384935 | 5.4:+2378636 | MS.gene001056:CDS |
| GGCCTTCAAAGGCACTTTCA+TGG | 0.385984 | 5.4:+2378780 | MS.gene001056:CDS |
| AAACCATTACTTCGAATTTG+TGG | 0.394649 | 5.4:-2378147 | None:intergenic |
| CCAGTTTCTTCATTCAAGAA+AGG | 0.397020 | 5.4:-2378995 | None:intergenic |
| TGGTATTCTTTACTGTCATA+TGG | 0.399133 | 5.4:+2378690 | MS.gene001056:CDS |
| CTTCTTACTCCTTACAAAAT+GGG | 0.401056 | 5.4:+2377581 | MS.gene001056:CDS |
| ATATAAAGTCCCAATTCGTT+AGG | 0.406105 | 5.4:-2378646 | None:intergenic |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5.4:-2378904 | None:intergenic |
| GAGATAGGAGCTGATAAAGT+TGG | 0.416753 | 5.4:+2378574 | MS.gene001056:CDS |
| GACTCCAACCCTAACGAATT+GGG | 0.419325 | 5.4:+2378637 | MS.gene001056:CDS |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5.4:+2378528 | MS.gene001056:CDS |
| AGGGCAGACCTTGTTGTCTA+TGG | 0.429742 | 5.4:+2378853 | MS.gene001056:CDS |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5.4:-2378192 | None:intergenic |
| AACCATGAAAGTGCCTTTGA+AGG | 0.438354 | 5.4:-2378782 | None:intergenic |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5.4:-2378678 | None:intergenic |
| GTGCAAATTGCAGGATTTGA+TGG | 0.444981 | 5.4:+2378412 | MS.gene001056:intron |
| GCAAATTCGATCTATCTCAT+AGG | 0.451023 | 5.4:+2377603 | MS.gene001056:CDS |
| CAGTTTCTTCATTCAAGAAA+GGG | 0.456188 | 5.4:-2378994 | None:intergenic |
| CTAAAGAGCACGTCGAGGCT+TGG | 0.460997 | 5.4:+2377880 | MS.gene001056:CDS |
| GCATGAACAGCATCCACAAT+GGG | 0.464445 | 5.4:-2377906 | None:intergenic |
| GACTTATCTGTAGATGATAT+TGG | 0.464557 | 5.4:-2378117 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5.4:+2378493 | MS.gene001056:CDS |
| CATTCTGCATATTCTGCAAA+AGG | 0.473703 | 5.4:-2378610 | None:intergenic |
| TCTCATCGGCACAAGGCTGT+CGG | 0.479067 | 5.4:-2378755 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.479079 | 5.4:+2378427 | MS.gene001056:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5.4:-2378970 | None:intergenic |
| CGCAATCAAGTGAAAATGGC+TGG | 0.482183 | 5.4:+2377533 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.483228 | 5.4:-2377820 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.488883 | 5.4:+2378759 | MS.gene001056:CDS |
| GTTGAAATCCATGGGGCTCA+TGG | 0.498562 | 5.4:+2378436 | MS.gene001056:CDS |
| GATATTGGTGCCTGTCCATT+CGG | 0.502015 | 5.4:-2378102 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.4:-2377753 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.502113 | 5.4:+2378413 | MS.gene001056:intron |
| CAGAGAGCCACCGGCTCTAA+CGG | 0.506975 | 5.4:+2377783 | MS.gene001056:CDS |
| ACACCACAAATTCGAAGTAA+TGG | 0.507759 | 5.4:+2378144 | MS.gene001056:CDS |
| CTCACAAGACAAAGATCCTA+TGG | 0.508545 | 5.4:+2377723 | MS.gene001056:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.515388 | 5.4:-2378677 | None:intergenic |
| ATGCCAAATCTGACAAAAGA+AGG | 0.517640 | 5.4:-2377940 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.518438 | 5.4:+2378559 | MS.gene001056:CDS |
| TCATCGGCACAAGGCTGTCG+GGG | 0.521557 | 5.4:-2378753 | None:intergenic |
| TATAAAGTCCCAATTCGTTA+GGG | 0.522588 | 5.4:-2378645 | None:intergenic |
| GTAAGGAGTAAGAAGAGGAA+TGG | 0.526420 | 5.4:-2377573 | None:intergenic |
| TGGCTCTCTGTGAATAATAG+AGG | 0.529112 | 5.4:-2377770 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5.4:+2378518 | MS.gene001056:CDS |
| TTGATGGGGTTGAAATCCAT+GGG | 0.529612 | 5.4:+2378428 | MS.gene001056:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.4:-2378462 | None:intergenic |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5.4:-2378522 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5.4:-2378189 | None:intergenic |
| AAGTCCCAATTCGTTAGGGT+TGG | 0.539732 | 5.4:-2378641 | None:intergenic |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5.4:+2378184 | MS.gene001056:CDS |
| ACTTGCTGCTAGAAATGCTA+TGG | 0.544349 | 5.4:+2378242 | MS.gene001056:CDS |
| GTGGATGCTGTTCATGCTAA+AGG | 0.544472 | 5.4:+2377912 | MS.gene001056:CDS |
| GCTAGAAATGCTATGGAAGC+TGG | 0.548470 | 5.4:+2378249 | MS.gene001056:CDS |
| CAAGGGTATCCAGACACGCC+AGG | 0.555989 | 5.4:+2377849 | MS.gene001056:CDS |
| GGTGTCTCTGACACCGCTCA+AGG | 0.561959 | 5.4:+2377831 | MS.gene001056:CDS |
| AGTTTATCAGCCGAATGGAC+AGG | 0.564367 | 5.4:+2378092 | MS.gene001056:intron |
| GAGAAGACCTCCGTTAGAGC+CGG | 0.566754 | 5.4:-2377793 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5.4:-2378769 | None:intergenic |
| GGAGGTTACGACCGACATGA+TGG | 0.569456 | 5.4:+2378808 | MS.gene001056:CDS |
| CTTCTCATAACCGAAGCTAC+CGG | 0.572746 | 5.4:+2377810 | MS.gene001056:CDS |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5.4:-2378762 | None:intergenic |
| TATTATTCACAGAGAGCCAC+CGG | 0.583608 | 5.4:+2377774 | MS.gene001056:CDS |
| TCAACAGTTTATCAGCCGAA+TGG | 0.583793 | 5.4:+2378087 | MS.gene001056:intron |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5.4:+2378769 | MS.gene001056:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.585344 | 5.4:-2377867 | None:intergenic |
| AGGTTGTGGAACGTTGCCAT+AGG | 0.592868 | 5.4:-2377739 | None:intergenic |
| GGCACTTTCATGGTTGCAGG+AGG | 0.593746 | 5.4:+2378790 | MS.gene001056:CDS |
| TTTGCAGAATATGCAGAATG+TGG | 0.598992 | 5.4:+2378613 | MS.gene001056:CDS |
| AAGACCTCCGTTAGAGCCGG+TGG | 0.607283 | 5.4:-2377790 | None:intergenic |
| GAGGTTACGACCGACATGAT+GGG | 0.607847 | 5.4:+2378809 | MS.gene001056:CDS |
| TAGGATCTTTGTCTTGTGAG+TGG | 0.610235 | 5.4:-2377720 | None:intergenic |
| AGTTTCTTCATTCAAGAAAG+GGG | 0.611551 | 5.4:-2378993 | None:intergenic |
| TCCCTGTTATACTTGTTCAG+AGG | 0.614414 | 5.4:-2378928 | None:intergenic |
| GTGTCTCTGACACCGCTCAA+GGG | 0.616121 | 5.4:+2377832 | MS.gene001056:CDS |
| CGAGGCTTGGAAACCCATTG+TGG | 0.618914 | 5.4:+2377893 | MS.gene001056:CDS |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5.4:-2378531 | None:intergenic |
| CAATGCCATAGCTGAAAACA+GGG | 0.621098 | 5.4:+2378834 | MS.gene001056:CDS |
| TATTCTTTACTGTCATATGG+TGG | 0.623581 | 5.4:+2378693 | MS.gene001056:CDS |
| GTAGGTAGCCATGAGCCCCA+TGG | 0.625089 | 5.4:-2378444 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5.4:-2378521 | None:intergenic |
| AGCATGAACAGCATCCACAA+TGG | 0.632785 | 5.4:-2377907 | None:intergenic |
| TTGAGCGGTGTCAGAGACAC+CGG | 0.633714 | 5.4:-2377829 | None:intergenic |
| GAACCAAGAATGAAAACTGT+TGG | 0.645257 | 5.4:+2378715 | MS.gene001056:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5.4:+2378496 | MS.gene001056:CDS |
| AGAGCCACCGGCTCTAACGG+AGG | 0.647688 | 5.4:+2377786 | MS.gene001056:CDS |
| TGGCATTGATCCCATCATGT+CGG | 0.655421 | 5.4:-2378819 | None:intergenic |
| GCAAATTGCAGGATTTGATG+GGG | 0.659323 | 5.4:+2378414 | MS.gene001056:intron |
| TCCTCTGAACAAGTATAACA+GGG | 0.662663 | 5.4:+2378927 | MS.gene001056:CDS |
| ACAAACGACCATAGACAACA+AGG | 0.681842 | 5.4:-2378861 | None:intergenic |
| TTGCAAAATTCACACCACCA+AGG | 0.704294 | 5.4:+2378175 | MS.gene001056:CDS |
| CGTGTCTGGATACCCTTGAG+CGG | 0.705121 | 5.4:-2377844 | None:intergenic |
| GAATAATAGAGGATAGCATG+AGG | 0.726209 | 5.4:-2377759 | None:intergenic |
| TGATGGGGTTGAAATCCATG+GGG | 0.726824 | 5.4:+2378429 | MS.gene001056:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.740755 | 5.4:+2378178 | MS.gene001056:CDS |
| ATGGACTAAAGAGCACGTCG+AGG | 0.748737 | 5.4:+2377875 | MS.gene001056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTGAATAATTTTTTATTT+TGG | - | chr5.4:2378302-2378321 | None:intergenic | 10.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.4:2378681-2378700 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.4:2378680-2378699 | None:intergenic | 20.0% |
| !! | ATAAACTGTTGAAAATAACA+TGG | - | chr5.4:2378079-2378098 | None:intergenic | 20.0% |
| !! | TATGAACATATGTGTATAAT+AGG | - | chr5.4:2378017-2378036 | None:intergenic | 20.0% |
| !! | TTGAAAATAACATGGAAAAT+GGG | - | chr5.4:2378071-2378090 | None:intergenic | 20.0% |
| ! | GTTGAAAATAACATGGAAAA+TGG | - | chr5.4:2378072-2378091 | None:intergenic | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5.4:2377695-2377714 | MS.gene001056:intron | 25.0% |
| AAACCATTACTTCGAATTTG+TGG | - | chr5.4:2378150-2378169 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5.4:2378493-2378512 | MS.gene001056:CDS | 30.0% | |
| ATATAAAGTCCCAATTCGTT+AGG | - | chr5.4:2378649-2378668 | None:intergenic | 30.0% | |
| ATTATGCAACATACTAACTG+TGG | + | chr5.4:2378390-2378409 | MS.gene001056:intron | 30.0% | |
| CTTCTTACTCCTTACAAAAT+GGG | + | chr5.4:2377581-2377600 | MS.gene001056:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.4:2378465-2378484 | None:intergenic | 30.0% | |
| GACTTATCTGTAGATGATAT+TGG | - | chr5.4:2378120-2378139 | None:intergenic | 30.0% | |
| TAACGAATTGGGACTTTATA+TGG | + | chr5.4:2378648-2378667 | MS.gene001056:CDS | 30.0% | |
| TATAAAGTCCCAATTCGTTA+GGG | - | chr5.4:2378648-2378667 | None:intergenic | 30.0% | |
| TATTCTTTACTGTCATATGG+TGG | + | chr5.4:2378693-2378712 | MS.gene001056:CDS | 30.0% | |
| TCTTCTTACTCCTTACAAAA+TGG | + | chr5.4:2377580-2377599 | MS.gene001056:CDS | 30.0% | |
| TGGTATTCTTTACTGTCATA+TGG | + | chr5.4:2378690-2378709 | MS.gene001056:CDS | 30.0% | |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5.4:2377581-2377600 | None:intergenic | 30.0% |
| !! | AGATCTTTTTGTTGCTTCAA+AGG | + | chr5.4:2378349-2378368 | MS.gene001056:intron | 30.0% |
| !! | GATCTTTTTGTTGCTTCAAA+GGG | + | chr5.4:2378350-2378369 | MS.gene001056:intron | 30.0% |
| ACACCACAAATTCGAAGTAA+TGG | + | chr5.4:2378144-2378163 | MS.gene001056:CDS | 35.0% | |
| ATGCCAAATCTGACAAAAGA+AGG | - | chr5.4:2377943-2377962 | None:intergenic | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5.4:2378613-2378632 | None:intergenic | 35.0% | |
| GAACCAAGAATGAAAACTGT+TGG | + | chr5.4:2378715-2378734 | MS.gene001056:CDS | 35.0% | |
| GAATAATAGAGGATAGCATG+AGG | - | chr5.4:2377762-2377781 | None:intergenic | 35.0% | |
| GCAAATTCGATCTATCTCAT+AGG | + | chr5.4:2377603-2377622 | MS.gene001056:CDS | 35.0% | |
| GTCAATGCCCTCAATAAATA+TGG | + | chr5.4:2378670-2378689 | MS.gene001056:CDS | 35.0% | |
| TACATTTCTGATCCAGTTCT+AGG | + | chr5.4:2378958-2378977 | MS.gene001056:CDS | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | chr5.4:2378973-2378992 | None:intergenic | 35.0% | |
| TCCTCTGAACAAGTATAACA+GGG | + | chr5.4:2378927-2378946 | MS.gene001056:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.4:2378413-2378432 | MS.gene001056:intron | 35.0% | |
| TTTGCAGAATATGCAGAATG+TGG | + | chr5.4:2378613-2378632 | MS.gene001056:CDS | 35.0% | |
| ! | CTACCTTCTTTTGTCAGATT+TGG | + | chr5.4:2377937-2377956 | MS.gene001056:CDS | 35.0% |
| ! | TCACCAACAGTTTTCATTCT+TGG | - | chr5.4:2378721-2378740 | None:intergenic | 35.0% |
| ! | TCGAATTTGCCCATTTTGTA+AGG | - | chr5.4:2377593-2377612 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr5.4:2377945-2377964 | MS.gene001056:CDS | 35.0% |
| ACAAACGACCATAGACAACA+AGG | - | chr5.4:2378864-2378883 | None:intergenic | 40.0% | |
| CAATGCCATAGCTGAAAACA+GGG | + | chr5.4:2378834-2378853 | MS.gene001056:CDS | 40.0% | |
| CTCACAAGACAAAGATCCTA+TGG | + | chr5.4:2377723-2377742 | MS.gene001056:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr5.4:2378926-2378945 | MS.gene001056:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.4:2378559-2378578 | MS.gene001056:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.4:2378496-2378515 | MS.gene001056:CDS | 40.0% | |
| GAGATAGGAGCTGATAAAGT+TGG | + | chr5.4:2378574-2378593 | MS.gene001056:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.4:2378898-2378917 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.4:2378414-2378433 | MS.gene001056:intron | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | chr5.4:2378907-2378926 | None:intergenic | 40.0% | |
| GTAAGGAGTAAGAAGAGGAA+TGG | - | chr5.4:2377576-2377595 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.4:2378412-2378431 | MS.gene001056:intron | 40.0% | |
| GTTGGAAGAGTTTCTGATTC+TGG | + | chr5.4:2377963-2377982 | MS.gene001056:CDS | 40.0% | |
| TAGGATCTTTGTCTTGTGAG+TGG | - | chr5.4:2377723-2377742 | None:intergenic | 40.0% | |
| TATTATTCACAGAGAGCCAC+CGG | + | chr5.4:2377774-2377793 | MS.gene001056:CDS | 40.0% | |
| TCAACAGTTTATCAGCCGAA+TGG | + | chr5.4:2378087-2378106 | MS.gene001056:intron | 40.0% | |
| TCAATGCCATAGCTGAAAAC+AGG | + | chr5.4:2378833-2378852 | MS.gene001056:CDS | 40.0% | |
| TCCCTGTTATACTTGTTCAG+AGG | - | chr5.4:2378931-2378950 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.4:2377870-2377889 | None:intergenic | 40.0% | |
| TGGCTCTCTGTGAATAATAG+AGG | - | chr5.4:2377773-2377792 | None:intergenic | 40.0% | |
| TTGATGGGGTTGAAATCCAT+GGG | + | chr5.4:2378428-2378447 | MS.gene001056:CDS | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | chr5.4:2378175-2378194 | MS.gene001056:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.4:2378427-2378446 | MS.gene001056:CDS | 40.0% | |
| ! | ACTTGCTGCTAGAAATGCTA+TGG | + | chr5.4:2378242-2378261 | MS.gene001056:CDS | 40.0% |
| !! | AACCATGAAAGTGCCTTTGA+AGG | - | chr5.4:2378785-2378804 | None:intergenic | 40.0% |
| AAACCGACAACGGTTCTCAA+GGG | - | chr5.4:2378524-2378543 | None:intergenic | 45.0% | |
| AAGTCCCAATTCGTTAGGGT+TGG | - | chr5.4:2378644-2378663 | None:intergenic | 45.0% | |
| AGACTCCAACCCTAACGAAT+TGG | + | chr5.4:2378636-2378655 | MS.gene001056:CDS | 45.0% | |
| AGCATGAACAGCATCCACAA+TGG | - | chr5.4:2377910-2377929 | None:intergenic | 45.0% | |
| AGTTTATCAGCCGAATGGAC+AGG | + | chr5.4:2378092-2378111 | MS.gene001056:intron | 45.0% | |
| CAAAATTCACACCACCAAGG+CGG | + | chr5.4:2378178-2378197 | MS.gene001056:CDS | 45.0% | |
| CTAACTGTGGTGCAAATTGC+AGG | + | chr5.4:2378403-2378422 | MS.gene001056:intron | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | chr5.4:2378534-2378553 | None:intergenic | 45.0% | |
| CTTCTCATAACCGAAGCTAC+CGG | + | chr5.4:2377810-2377829 | MS.gene001056:CDS | 45.0% | |
| GACTCCAACCCTAACGAATT+GGG | + | chr5.4:2378637-2378656 | MS.gene001056:CDS | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5.4:2377909-2377928 | None:intergenic | 45.0% | |
| GCTAGAAATGCTATGGAAGC+TGG | + | chr5.4:2378249-2378268 | MS.gene001056:CDS | 45.0% | |
| GTGGATGCTGTTCATGCTAA+AGG | + | chr5.4:2377912-2377931 | MS.gene001056:CDS | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.4:2377756-2377775 | None:intergenic | 45.0% | |
| TGATGGGGTTGAAATCCATG+GGG | + | chr5.4:2378429-2378448 | MS.gene001056:CDS | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5.4:2378772-2378791 | None:intergenic | 45.0% |
| ! | GATATTGGTGCCTGTCCATT+CGG | - | chr5.4:2378105-2378124 | None:intergenic | 45.0% |
| !! | AAAGGCACTTTCATGGTTGC+AGG | + | chr5.4:2378787-2378806 | MS.gene001056:CDS | 45.0% |
| !! | TGGCATTGATCCCATCATGT+CGG | - | chr5.4:2378822-2378841 | None:intergenic | 45.0% |
| !! | TTGTTGCTTCAAAGGGCACT+AGG | + | chr5.4:2378357-2378376 | MS.gene001056:intron | 45.0% |
| AGGTTGTGGAACGTTGCCAT+AGG | - | chr5.4:2377742-2377761 | None:intergenic | 50.0% | |
| ATCCAGACACGCCAGGTATA+TGG | + | chr5.4:2377856-2377875 | MS.gene001056:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | chr5.4:2378525-2378544 | None:intergenic | 50.0% | |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5.4:2378769-2378788 | MS.gene001056:CDS | 50.0% | |
| GAGGTTACGACCGACATGAT+GGG | + | chr5.4:2378809-2378828 | MS.gene001056:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.4:2378518-2378537 | MS.gene001056:CDS | 50.0% | |
| GTTGAAATCCATGGGGCTCA+TGG | + | chr5.4:2378436-2378455 | MS.gene001056:CDS | 50.0% | |
| ! | AGGGCAGACCTTGTTGTCTA+TGG | + | chr5.4:2378853-2378872 | MS.gene001056:CDS | 50.0% |
| ! | ATGGACTAAAGAGCACGTCG+AGG | + | chr5.4:2377875-2377894 | MS.gene001056:CDS | 50.0% |
| ! | GTCTGCCCTGTTTTCAGCTA+TGG | - | chr5.4:2378842-2378861 | None:intergenic | 50.0% |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | chr5.4:2378528-2378547 | MS.gene001056:CDS | 50.0% |
| !! | GGCCTTCAAAGGCACTTTCA+TGG | + | chr5.4:2378780-2378799 | MS.gene001056:CDS | 50.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5.4:2378765-2378784 | None:intergenic | 55.0% | |
| CGAGGCTTGGAAACCCATTG+TGG | + | chr5.4:2377893-2377912 | MS.gene001056:CDS | 55.0% | |
| CGTGTCTGGATACCCTTGAG+CGG | - | chr5.4:2377847-2377866 | None:intergenic | 55.0% | |
| GAGAAGACCTCCGTTAGAGC+CGG | - | chr5.4:2377796-2377815 | None:intergenic | 55.0% | |
| GGAGGTTACGACCGACATGA+TGG | + | chr5.4:2378808-2378827 | MS.gene001056:CDS | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5.4:2378790-2378809 | MS.gene001056:CDS | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | chr5.4:2377823-2377842 | None:intergenic | 55.0% | |
| GTCCATATACCTGGCGTGTC+TGG | - | chr5.4:2377861-2377880 | None:intergenic | 55.0% | |
| GTGTCTCTGACACCGCTCAA+GGG | + | chr5.4:2377832-2377851 | MS.gene001056:CDS | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | chr5.4:2378195-2378214 | None:intergenic | 55.0% | |
| TCTCATCGGCACAAGGCTGT+CGG | - | chr5.4:2378758-2378777 | None:intergenic | 55.0% | |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5.4:2378759-2378778 | MS.gene001056:CDS | 55.0% |
| ! | CTAAAGAGCACGTCGAGGCT+TGG | + | chr5.4:2377880-2377899 | MS.gene001056:CDS | 55.0% |
| ! | TTGAGCGGTGTCAGAGACAC+CGG | - | chr5.4:2377832-2377851 | None:intergenic | 55.0% |
| AAGACCTCCGTTAGAGCCGG+TGG | - | chr5.4:2377793-2377812 | None:intergenic | 60.0% | |
| CTCATCGGCACAAGGCTGTC+GGG | - | chr5.4:2378757-2378776 | None:intergenic | 60.0% | |
| GGTGTCTCTGACACCGCTCA+AGG | + | chr5.4:2377831-2377850 | MS.gene001056:CDS | 60.0% | |
| GTAGGTAGCCATGAGCCCCA+TGG | - | chr5.4:2378447-2378466 | None:intergenic | 60.0% | |
| TCACACCACCAAGGCGGCTA+AGG | + | chr5.4:2378184-2378203 | MS.gene001056:CDS | 60.0% | |
| TCATCGGCACAAGGCTGTCG+GGG | - | chr5.4:2378756-2378775 | None:intergenic | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | chr5.4:2378192-2378211 | None:intergenic | 60.0% | |
| !! | CAAGGGTATCCAGACACGCC+AGG | + | chr5.4:2377849-2377868 | MS.gene001056:CDS | 60.0% |
| !! | CAGAGAGCCACCGGCTCTAA+CGG | + | chr5.4:2377783-2377802 | MS.gene001056:CDS | 60.0% |
| !! | AGAGCCACCGGCTCTAACGG+AGG | + | chr5.4:2377786-2377805 | MS.gene001056:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2377548 | 2379008 | 2377548 | ID=MS.gene001056 |
| chr5.4 | mRNA | 2377548 | 2379008 | 2377548 | ID=MS.gene001056.t1;Parent=MS.gene001056 |
| chr5.4 | exon | 2377548 | 2377624 | 2377548 | ID=MS.gene001056.t1.exon1;Parent=MS.gene001056.t1 |
| chr5.4 | CDS | 2377548 | 2377624 | 2377548 | ID=cds.MS.gene001056.t1;Parent=MS.gene001056.t1 |
| chr5.4 | exon | 2377707 | 2377984 | 2377707 | ID=MS.gene001056.t1.exon2;Parent=MS.gene001056.t1 |
| chr5.4 | CDS | 2377707 | 2377984 | 2377707 | ID=cds.MS.gene001056.t1;Parent=MS.gene001056.t1 |
| chr5.4 | exon | 2378094 | 2378270 | 2378094 | ID=MS.gene001056.t1.exon3;Parent=MS.gene001056.t1 |
| chr5.4 | CDS | 2378094 | 2378270 | 2378094 | ID=cds.MS.gene001056.t1;Parent=MS.gene001056.t1 |
| chr5.4 | exon | 2378425 | 2379008 | 2378425 | ID=MS.gene001056.t1.exon4;Parent=MS.gene001056.t1 |
| chr5.4 | CDS | 2378425 | 2379008 | 2378425 | ID=cds.MS.gene001056.t1;Parent=MS.gene001056.t1 |
| Gene Sequence |
| Protein sequence |
