Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40474.t1 | RHN53335.1 | 97.8 | 363 | 8 | 0 | 1 | 363 | 29 | 391 | 8.70E-208 | 732.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40474.t1 | B9FSC8 | 74.1 | 363 | 88 | 1 | 6 | 362 | 1 | 363 | 1.2e-162 | 573.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40474.t1 | G7K3R4 | 97.8 | 363 | 8 | 0 | 1 | 363 | 1 | 363 | 6.2e-208 | 732.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40474.t1 | MTR_5g006710 | 97.796 | 363 | 8 | 0 | 1 | 363 | 1 | 363 | 0.0 | 743 |
| MS.gene40474.t1 | MTR_5g006670 | 87.640 | 356 | 44 | 0 | 8 | 363 | 4 | 359 | 0.0 | 656 |
| MS.gene40474.t1 | MTR_5g006800 | 84.298 | 363 | 51 | 1 | 7 | 363 | 7 | 369 | 0.0 | 642 |
| MS.gene40474.t1 | MTR_5g006780 | 83.288 | 365 | 53 | 2 | 7 | 363 | 7 | 371 | 0.0 | 628 |
| MS.gene40474.t1 | MTR_5g006750 | 80.000 | 365 | 65 | 2 | 7 | 363 | 7 | 371 | 0.0 | 606 |
| MS.gene40474.t1 | MTR_5g006740 | 78.453 | 362 | 72 | 1 | 8 | 363 | 4 | 365 | 0.0 | 600 |
| MS.gene40474.t1 | MTR_5g008040 | 77.174 | 368 | 78 | 1 | 1 | 362 | 3 | 370 | 0.0 | 599 |
| MS.gene40474.t1 | MTR_5g006740 | 74.586 | 362 | 69 | 2 | 8 | 363 | 4 | 348 | 0.0 | 555 |
| MS.gene40474.t1 | MTR_3g115600 | 70.787 | 356 | 102 | 1 | 10 | 363 | 8 | 363 | 0.0 | 538 |
| MS.gene40474.t1 | MTR_5g006720 | 70.933 | 375 | 65 | 3 | 6 | 363 | 5 | 352 | 0.0 | 529 |
| MS.gene40474.t1 | MTR_4g125470 | 53.514 | 370 | 153 | 3 | 12 | 362 | 19 | 388 | 5.36e-145 | 416 |
| MS.gene40474.t1 | MTR_5g006730 | 91.453 | 117 | 10 | 0 | 1 | 117 | 1 | 117 | 2.50e-74 | 226 |
| MS.gene40474.t1 | MTR_3g096570 | 78.873 | 71 | 15 | 0 | 169 | 239 | 8 | 78 | 1.33e-31 | 120 |
| MS.gene40474.t1 | MTR_3g096562 | 76.389 | 72 | 17 | 0 | 159 | 230 | 162 | 233 | 8.10e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40474.t1 | AT1G76690 | 72.358 | 369 | 96 | 1 | 1 | 363 | 3 | 371 | 0.0 | 567 |
| MS.gene40474.t1 | AT1G76680 | 71.816 | 369 | 98 | 2 | 1 | 363 | 1 | 369 | 0.0 | 565 |
| MS.gene40474.t1 | AT1G76680 | 67.259 | 394 | 98 | 3 | 1 | 363 | 1 | 394 | 0.0 | 551 |
| MS.gene40474.t1 | AT1G09400 | 70.062 | 324 | 97 | 0 | 18 | 341 | 1 | 324 | 1.32e-178 | 498 |
| MS.gene40474.t1 | AT1G09400 | 71.591 | 264 | 75 | 0 | 78 | 341 | 2 | 265 | 4.08e-147 | 416 |
| MS.gene40474.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 8.29e-145 | 416 |
| MS.gene40474.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 8.29e-145 | 416 |
| MS.gene40474.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 8.29e-145 | 416 |
| MS.gene40474.t1 | AT1G17990 | 71.260 | 254 | 70 | 2 | 9 | 260 | 6 | 258 | 2.50e-135 | 387 |
| MS.gene40474.t1 | AT1G18020 | 71.260 | 254 | 70 | 2 | 9 | 260 | 6 | 258 | 2.50e-135 | 387 |
| MS.gene40474.t1 | AT1G17990 | 68.110 | 254 | 70 | 3 | 9 | 260 | 6 | 250 | 8.39e-127 | 365 |
Find 80 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.208814 | 5.3:-1768362 | None:intergenic |
| CTCCTCTCAACAAGTATAAT+AGG | 0.238760 | 5.3:+1768393 | MS.gene40474:CDS |
| TATGAGAAGACCACCTTTAG+AGG | 0.244714 | 5.3:-1767023 | None:intergenic |
| AAGGCAGATCTTGTAGTTTA+TGG | 0.250368 | 5.3:+1768320 | MS.gene40474:CDS |
| GTTGGAAGGGTTTCAAATTC+AGG | 0.273882 | 5.3:+1767190 | MS.gene40474:CDS |
| TAGGATCTCATTCTTGTTAG+TGG | 0.316308 | 5.3:-1766953 | None:intergenic |
| ATCCAAACACACCAGGTATA+TGG | 0.318288 | 5.3:+1767083 | MS.gene40474:CDS |
| GGCTTTCAATGGCACTTTCA+TGG | 0.332359 | 5.3:+1768247 | MS.gene40474:CDS |
| GTCCATATACCTGGTGTGTT+TGG | 0.341076 | 5.3:-1767085 | None:intergenic |
| CTCATTGGCACCAGACTGTA+AGG | 0.356523 | 5.3:-1768221 | None:intergenic |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 5.3:+1768115 | MS.gene40474:CDS |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 5.3:-1768113 | None:intergenic |
| GCATTGAGTGCAAATCTCTT+TGG | 0.388769 | 5.3:-1768371 | None:intergenic |
| GACATTCTATATTTCTGATC+CGG | 0.394293 | 5.3:+1768418 | MS.gene40474:CDS |
| GAGATAGGAGCAGATAAAGT+TGG | 0.397834 | 5.3:+1768041 | MS.gene40474:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 5.3:-1768145 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 5.3:-1768236 | None:intergenic |
| TATATTTCTGATCCGGTTGT+TGG | 0.413679 | 5.3:+1768425 | MS.gene40474:CDS |
| TTGAATTTGCCCATCATGTA+AGG | 0.414262 | 5.3:-1766822 | None:intergenic |
| GAACCGTTGTCGATTTCCTT+TGG | 0.415853 | 5.3:+1767995 | MS.gene40474:CDS |
| TCCTCTCAACAAGTATAATA+GGG | 0.419961 | 5.3:+1768394 | MS.gene40474:CDS |
| GTCAGATTTGGCATGTTGGA+AGG | 0.432988 | 5.3:+1767176 | MS.gene40474:CDS |
| CTTTCTGCATATTCTGCAAA+TGG | 0.436481 | 5.3:-1768077 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 5.3:-1767579 | None:intergenic |
| AACGACCGAACAGATGAATA+TGG | 0.449164 | 5.3:+1767960 | MS.gene40474:CDS |
| GCAAATTCAATCTAGCTCAT+AGG | 0.452427 | 5.3:+1766835 | MS.gene40474:CDS |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 5.3:+1768104 | MS.gene40474:CDS |
| AATGGCACTTTCATGGCTGC+AGG | 0.454817 | 5.3:+1768254 | MS.gene40474:CDS |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 5.3:-1768144 | None:intergenic |
| TCTTCTTACACCTTACATGA+TGG | 0.464882 | 5.3:+1766812 | MS.gene40474:CDS |
| GGGTTGAGGAACATTGTTGT+AGG | 0.466237 | 5.3:-1766972 | None:intergenic |
| CTTCTCATAGCTGAAGCTAC+TGG | 0.479639 | 5.3:+1767037 | MS.gene40474:CDS |
| ATCCACCATATTCATCTGTT+CGG | 0.480368 | 5.3:-1767965 | None:intergenic |
| CAGTCTGGTGCCAATGAGAA+AGG | 0.498444 | 5.3:+1768226 | MS.gene40474:CDS |
| GAAATCGACAACGGTTCTCA+AGG | 0.504808 | 5.3:-1767989 | None:intergenic |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 5.3:+1768103 | MS.gene40474:CDS |
| TAGTCAGTGTAACCAACAAC+CGG | 0.513490 | 5.3:-1768437 | None:intergenic |
| GATTGAAAGCCCTTACAGTC+TGG | 0.513661 | 5.3:+1768211 | MS.gene40474:CDS |
| GAATAATACTTGACAGCAAT+GGG | 0.514062 | 5.3:-1766992 | None:intergenic |
| TCAGATTTGGCATGTTGGAA+GGG | 0.515594 | 5.3:+1767177 | MS.gene40474:CDS |
| GAAGCAGTTGTGAATGAGAT+AGG | 0.516901 | 5.3:+1768026 | MS.gene40474:CDS |
| TTTGATGGAGTTGAAATCCA+TGG | 0.517258 | 5.3:+1767894 | MS.gene40474:CDS |
| TACTTGACAGCAATGGGTTG+AGG | 0.519656 | 5.3:-1766986 | None:intergenic |
| TCATCTGTACTTAGCCGTCT+CGG | 0.521373 | 5.3:-1767651 | None:intergenic |
| CTTTCATGAATTGTTCAAGT+AGG | 0.528070 | 5.3:-1767929 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.3:+1767708 | MS.gene40474:CDS |
| TGAATAATACTTGACAGCAA+TGG | 0.535636 | 5.3:-1766993 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.535658 | 5.3:+1767903 | MS.gene40474:CDS |
| TTCTGTCAGATTTGGCATGT+TGG | 0.537785 | 5.3:+1767172 | MS.gene40474:CDS |
| GACTTGTCAGTAGAAGATAT+CGG | 0.550201 | 5.3:-1767594 | None:intergenic |
| CTTCTTACACCTTACATGAT+GGG | 0.552493 | 5.3:+1766813 | MS.gene40474:CDS |
| CAATGCTATAGCTGAAAACA+AGG | 0.556236 | 5.3:+1768301 | MS.gene40474:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.556652 | 5.3:-1767094 | None:intergenic |
| TCATGAACCGCATCTACGAT+AGG | 0.560519 | 5.3:-1767133 | None:intergenic |
| TATTCACAGAGAACCTCTAA+AGG | 0.566712 | 5.3:+1767010 | MS.gene40474:CDS |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.567256 | 5.3:+1768236 | MS.gene40474:CDS |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 5.3:+1768157 | MS.gene40474:CDS |
| AACAATTCACGAAACCGAGA+CGG | 0.589361 | 5.3:+1767637 | MS.gene40474:CDS |
| TCCCTATTATACTTGTTGAG+AGG | 0.594177 | 5.3:-1768395 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.3:-1767911 | None:intergenic |
| TCATTGGCACCAGACTGTAA+GGG | 0.602205 | 5.3:-1768220 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 5.3:+1768275 | MS.gene40474:CDS |
| ATCATGTAAGGTGTAAGAAG+AGG | 0.609327 | 5.3:-1766810 | None:intergenic |
| ACTGCTTCAACAACTTCCAA+AGG | 0.613321 | 5.3:-1768011 | None:intergenic |
| AAATCGACAACGGTTCTCAA+GGG | 0.613592 | 5.3:-1767988 | None:intergenic |
| GGTGTCTCAGACACTGCTCA+AGG | 0.615730 | 5.3:+1767058 | MS.gene40474:CDS |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 5.3:+1768276 | MS.gene40474:CDS |
| CAAGGCTATCCAAACACACC+AGG | 0.616594 | 5.3:+1767076 | MS.gene40474:CDS |
| GGCACTTTCATGGCTGCAGG+AGG | 0.627009 | 5.3:+1768257 | MS.gene40474:CDS |
| CGAACAGTTTATCAGCCGAA+TGG | 0.629394 | 5.3:+1767564 | MS.gene40474:intron |
| GTAGATGCGGTTCATGACAA+AGG | 0.633675 | 5.3:+1767139 | MS.gene40474:CDS |
| TTTGCAGAATATGCAGAAAG+CGG | 0.636317 | 5.3:+1768080 | MS.gene40474:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 5.3:+1767107 | MS.gene40474:CDS |
| GACCGAACAGATGAATATGG+TGG | 0.642811 | 5.3:+1767963 | MS.gene40474:CDS |
| TCACAGAGAACCTCTAAAGG+TGG | 0.662878 | 5.3:+1767013 | MS.gene40474:CDS |
| GTGGAAACCTATCGTAGATG+CGG | 0.678720 | 5.3:+1767126 | MS.gene40474:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 5.3:+1768160 | MS.gene40474:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 5.3:+1767102 | MS.gene40474:CDS |
| CTTCCAAAGGAAATCGACAA+CGG | 0.701023 | 5.3:-1767998 | None:intergenic |
| GATGCGGTTCATGACAAAGG+CGG | 0.732511 | 5.3:+1767142 | MS.gene40474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATGAAAATAAAAGT+TGG | + | chr5.3:1767245-1767264 | MS.gene40474:intron | 10.0% |
| !! | AAATAGAATAGAAAGTTAAA+TGG | - | chr5.3:1766874-1766893 | None:intergenic | 15.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | - | chr5.3:1768148-1768167 | None:intergenic | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | - | chr5.3:1768147-1768166 | None:intergenic | 20.0% |
| !! | ATAGTAAACTGAATATGATT+TGG | + | chr5.3:1767418-1767437 | MS.gene40474:intron | 20.0% |
| !! | ATTATTGAGTATTACTATCA+AGG | + | chr5.3:1767451-1767470 | MS.gene40474:intron | 20.0% |
| !! | TAGTAAACTGAATATGATTT+GGG | + | chr5.3:1767419-1767438 | MS.gene40474:intron | 20.0% |
| !!! | ATTGAAGCATTTTTCAATTT+CGG | - | chr5.3:1767759-1767778 | None:intergenic | 20.0% |
| ! | AGGCATTAATCAAATAACTT+AGG | + | chr5.3:1767382-1767401 | MS.gene40474:intron | 25.0% |
| ! | ATTCAGTTTACTATCAATGA+TGG | - | chr5.3:1767412-1767431 | None:intergenic | 25.0% |
| !! | ATTGATGATCTTAACCAATT+TGG | - | chr5.3:1767303-1767322 | None:intergenic | 25.0% |
| !! | GTATATTTTTCTGTCAGATT+TGG | + | chr5.3:1767164-1767183 | MS.gene40474:CDS | 25.0% |
| !! | TTGATGATCTTAACCAATTT+GGG | - | chr5.3:1767302-1767321 | None:intergenic | 25.0% |
| !!! | TCAAGTATAACATGCTTTTT+AGG | + | chr5.3:1767362-1767381 | MS.gene40474:intron | 25.0% |
| !!! | TTGAAGCATTTTTCAATTTC+GGG | - | chr5.3:1767758-1767777 | None:intergenic | 25.0% |
| ATCTCCTAACATAATCAATG+TGG | + | chr5.3:1767857-1767876 | MS.gene40474:intron | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr5.3:1768157-1768176 | MS.gene40474:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.3:1767932-1767951 | None:intergenic | 30.0% | |
| GAATAATACTTGACAGCAAT+GGG | - | chr5.3:1766995-1767014 | None:intergenic | 30.0% | |
| GGTAATGCTAAAATTATGCT+AGG | - | chr5.3:1767338-1767357 | None:intergenic | 30.0% | |
| TCCTCTCAACAAGTATAATA+GGG | + | chr5.3:1768394-1768413 | MS.gene40474:CDS | 30.0% | |
| TGAATAATACTTGACAGCAA+TGG | - | chr5.3:1766996-1767015 | None:intergenic | 30.0% | |
| ! | AAACTGAATATGATTTGGGT+TGG | + | chr5.3:1767423-1767442 | MS.gene40474:intron | 30.0% |
| ! | AACCACTTTCTAATGTTTTG+AGG | + | chr5.3:1767477-1767496 | MS.gene40474:intron | 30.0% |
| ! | CATCATTTTCAGAGTTGTTT+TGG | + | chr5.3:1766928-1766947 | MS.gene40474:intron | 30.0% |
| ! | GACATTCTATATTTCTGATC+CGG | + | chr5.3:1768418-1768437 | MS.gene40474:CDS | 30.0% |
| !! | AAAATAAAAGTTGGTGTGAG+CGG | + | chr5.3:1767254-1767273 | MS.gene40474:intron | 30.0% |
| !! | ATTTGTTGCTTTAATGCACA+AGG | + | chr5.3:1767823-1767842 | MS.gene40474:intron | 30.0% |
| !! | TCAGAAGCTGATTTTATTCT+TGG | - | chr5.3:1768188-1768207 | None:intergenic | 30.0% |
| AAATGCATTGGGACTTCATA+TGG | + | chr5.3:1768115-1768134 | MS.gene40474:CDS | 35.0% | |
| AAGCATGTTATACTTGAGCT+AGG | - | chr5.3:1767359-1767378 | None:intergenic | 35.0% | |
| AAGGCAGATCTTGTAGTTTA+TGG | + | chr5.3:1768320-1768339 | MS.gene40474:CDS | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | chr5.3:1768103-1768122 | MS.gene40474:CDS | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | - | chr5.3:1768116-1768135 | None:intergenic | 35.0% | |
| ATCAATGTGGTGCAAATTGA+AGG | + | chr5.3:1767870-1767889 | MS.gene40474:intron | 35.0% | |
| ATCATGTAAGGTGTAAGAAG+AGG | - | chr5.3:1766813-1766832 | None:intergenic | 35.0% | |
| ATCCACCATATTCATCTGTT+CGG | - | chr5.3:1767968-1767987 | None:intergenic | 35.0% | |
| ATTGAAGCTGGTAAGTTTAC+TGG | + | chr5.3:1767720-1767739 | MS.gene40474:intron | 35.0% | |
| CAATGCTATAGCTGAAAACA+AGG | + | chr5.3:1768301-1768320 | MS.gene40474:CDS | 35.0% | |
| CTCCTCTCAACAAGTATAAT+AGG | + | chr5.3:1768393-1768412 | MS.gene40474:CDS | 35.0% | |
| CTTCTTACACCTTACATGAT+GGG | + | chr5.3:1766813-1766832 | MS.gene40474:CDS | 35.0% | |
| CTTTCTGCATATTCTGCAAA+TGG | - | chr5.3:1768080-1768099 | None:intergenic | 35.0% | |
| GACCTCAAAACATTAGAAAG+TGG | - | chr5.3:1767482-1767501 | None:intergenic | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | chr5.3:1768104-1768123 | MS.gene40474:CDS | 35.0% | |
| GACTTGTCAGTAGAAGATAT+CGG | - | chr5.3:1767597-1767616 | None:intergenic | 35.0% | |
| GATAAACTGTTCGATTCACA+AGG | - | chr5.3:1767557-1767576 | None:intergenic | 35.0% | |
| TAGGATCTCATTCTTGTTAG+TGG | - | chr5.3:1766956-1766975 | None:intergenic | 35.0% | |
| TATTCACAGAGAACCTCTAA+AGG | + | chr5.3:1767010-1767029 | MS.gene40474:CDS | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr5.3:1768160-1768179 | MS.gene40474:CDS | 35.0% | |
| TCTTCTTACACCTTACATGA+TGG | + | chr5.3:1766812-1766831 | MS.gene40474:CDS | 35.0% | |
| TTGAATTTGCCCATCATGTA+AGG | - | chr5.3:1766825-1766844 | None:intergenic | 35.0% | |
| TTTGATGGAGTTGAAATCCA+TGG | + | chr5.3:1767894-1767913 | MS.gene40474:CDS | 35.0% | |
| TTTGCAGAATATGCAGAAAG+CGG | + | chr5.3:1768080-1768099 | MS.gene40474:CDS | 35.0% | |
| ! | GCAAATTCAATCTAGCTCAT+AGG | + | chr5.3:1766835-1766854 | MS.gene40474:CDS | 35.0% |
| ! | TATATTTCTGATCCGGTTGT+TGG | + | chr5.3:1768425-1768444 | MS.gene40474:CDS | 35.0% |
| ! | TCCCTATTATACTTGTTGAG+AGG | - | chr5.3:1768398-1768417 | None:intergenic | 35.0% |
| ! | TGCACCACATTGATTATGTT+AGG | - | chr5.3:1767864-1767883 | None:intergenic | 35.0% |
| !! | GTGCAAATTGAAGGTTTTGA+TGG | + | chr5.3:1767879-1767898 | MS.gene40474:intron | 35.0% |
| AAATCGACAACGGTTCTCAA+GGG | - | chr5.3:1767991-1768010 | None:intergenic | 40.0% | |
| AACAATTCACGAAACCGAGA+CGG | + | chr5.3:1767637-1767656 | MS.gene40474:CDS | 40.0% | |
| AACGACCGAACAGATGAATA+TGG | + | chr5.3:1767960-1767979 | MS.gene40474:CDS | 40.0% | |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr5.3:1768014-1768033 | None:intergenic | 40.0% | |
| ATCCAAACACACCAGGTATA+TGG | + | chr5.3:1767083-1767102 | MS.gene40474:CDS | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr5.3:1768236-1768255 | MS.gene40474:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr5.3:1768239-1768258 | None:intergenic | 40.0% | |
| CTTCCAAAGGAAATCGACAA+CGG | - | chr5.3:1768001-1768020 | None:intergenic | 40.0% | |
| GAAGCAGTTGTGAATGAGAT+AGG | + | chr5.3:1768026-1768045 | MS.gene40474:CDS | 40.0% | |
| GAGATAGGAGCAGATAAAGT+TGG | + | chr5.3:1768041-1768060 | MS.gene40474:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.3:1768365-1768384 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1767708-1767727 | MS.gene40474:CDS | 40.0% | |
| GCATTGAGTGCAAATCTCTT+TGG | - | chr5.3:1768374-1768393 | None:intergenic | 40.0% | |
| GTTGGAAGGGTTTCAAATTC+AGG | + | chr5.3:1767190-1767209 | MS.gene40474:CDS | 40.0% | |
| TAGTCAGTGTAACCAACAAC+CGG | - | chr5.3:1768440-1768459 | None:intergenic | 40.0% | |
| TATGAGAAGACCACCTTTAG+AGG | - | chr5.3:1767026-1767045 | None:intergenic | 40.0% | |
| TCAGATTTGGCATGTTGGAA+GGG | + | chr5.3:1767177-1767196 | MS.gene40474:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.3:1767097-1767116 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.3:1767172-1767191 | MS.gene40474:CDS | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr5.3:1767102-1767121 | MS.gene40474:CDS | 40.0% |
| !! | CTGAATATGATTTGGGTTGG+AGG | + | chr5.3:1767426-1767445 | MS.gene40474:intron | 40.0% |
| CCATCTGTGTCAACCCAAAT+TGG | + | chr5.3:1767286-1767305 | MS.gene40474:intron | 45.0% | |
| CGAACAGTTTATCAGCCGAA+TGG | + | chr5.3:1767564-1767583 | MS.gene40474:intron | 45.0% | |
| CTTCTCATAGCTGAAGCTAC+TGG | + | chr5.3:1767037-1767056 | MS.gene40474:CDS | 45.0% | |
| GAAATCGACAACGGTTCTCA+AGG | - | chr5.3:1767992-1768011 | None:intergenic | 45.0% | |
| GACCGAACAGATGAATATGG+TGG | + | chr5.3:1767963-1767982 | MS.gene40474:CDS | 45.0% | |
| GATTGAAAGCCCTTACAGTC+TGG | + | chr5.3:1768211-1768230 | MS.gene40474:CDS | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | chr5.3:1768247-1768266 | MS.gene40474:CDS | 45.0% | |
| GGGTTGAGGAACATTGTTGT+AGG | - | chr5.3:1766975-1766994 | None:intergenic | 45.0% | |
| GTAGATGCGGTTCATGACAA+AGG | + | chr5.3:1767139-1767158 | MS.gene40474:CDS | 45.0% | |
| GTCAGATTTGGCATGTTGGA+AGG | + | chr5.3:1767176-1767195 | MS.gene40474:CDS | 45.0% | |
| GTCCATATACCTGGTGTGTT+TGG | - | chr5.3:1767088-1767107 | None:intergenic | 45.0% | |
| GTGGAAACCTATCGTAGATG+CGG | + | chr5.3:1767126-1767145 | MS.gene40474:CDS | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.3:1767903-1767922 | MS.gene40474:CDS | 45.0% | |
| TCATCTGTACTTAGCCGTCT+CGG | - | chr5.3:1767654-1767673 | None:intergenic | 45.0% | |
| TCATGAACCGCATCTACGAT+AGG | - | chr5.3:1767136-1767155 | None:intergenic | 45.0% | |
| TCATTGGCACCAGACTGTAA+GGG | - | chr5.3:1768223-1768242 | None:intergenic | 45.0% | |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | chr5.3:1767582-1767601 | None:intergenic | 45.0% |
| ! | TCACAGAGAACCTCTAAAGG+TGG | + | chr5.3:1767013-1767032 | MS.gene40474:CDS | 45.0% |
| !! | CCAATTTGGGTTGACACAGA+TGG | - | chr5.3:1767289-1767308 | None:intergenic | 45.0% |
| !! | GAACCGTTGTCGATTTCCTT+TGG | + | chr5.3:1767995-1768014 | MS.gene40474:CDS | 45.0% |
| !! | TAAAAGTTGGTGTGAGCGGA+AGG | + | chr5.3:1767258-1767277 | MS.gene40474:intron | 45.0% |
| !! | TACTTGACAGCAATGGGTTG+AGG | - | chr5.3:1766989-1767008 | None:intergenic | 45.0% |
| AATGGCACTTTCATGGCTGC+AGG | + | chr5.3:1768254-1768273 | MS.gene40474:CDS | 50.0% | |
| CAAGGCTATCCAAACACACC+AGG | + | chr5.3:1767076-1767095 | MS.gene40474:CDS | 50.0% | |
| CTCATTGGCACCAGACTGTA+AGG | - | chr5.3:1768224-1768243 | None:intergenic | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | + | chr5.3:1768276-1768295 | MS.gene40474:CDS | 50.0% | |
| GATGCGGTTCATGACAAAGG+CGG | + | chr5.3:1767142-1767161 | MS.gene40474:CDS | 50.0% | |
| GGAGGCTATGACAGACAAGA+CGG | + | chr5.3:1768275-1768294 | MS.gene40474:CDS | 50.0% | |
| ! | CAGTCTGGTGCCAATGAGAA+AGG | + | chr5.3:1768226-1768245 | MS.gene40474:CDS | 50.0% |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | + | chr5.3:1767107-1767126 | MS.gene40474:CDS | 50.0% |
| GGTGTCTCAGACACTGCTCA+AGG | + | chr5.3:1767058-1767077 | MS.gene40474:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.3:1767914-1767933 | None:intergenic | 55.0% | |
| GGCACTTTCATGGCTGCAGG+AGG | + | chr5.3:1768257-1768276 | MS.gene40474:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1766780 | 1768475 | 1766780 | ID=MS.gene40474 |
| chr5.3 | mRNA | 1766780 | 1768475 | 1766780 | ID=MS.gene40474.t1;Parent=MS.gene40474 |
| chr5.3 | exon | 1766780 | 1766856 | 1766780 | ID=MS.gene40474.t1.exon1;Parent=MS.gene40474.t1 |
| chr5.3 | CDS | 1766780 | 1766856 | 1766780 | ID=cds.MS.gene40474.t1;Parent=MS.gene40474.t1 |
| chr5.3 | exon | 1766940 | 1767211 | 1766940 | ID=MS.gene40474.t1.exon2;Parent=MS.gene40474.t1 |
| chr5.3 | CDS | 1766940 | 1767211 | 1766940 | ID=cds.MS.gene40474.t1;Parent=MS.gene40474.t1 |
| chr5.3 | exon | 1767571 | 1767729 | 1767571 | ID=MS.gene40474.t1.exon3;Parent=MS.gene40474.t1 |
| chr5.3 | CDS | 1767571 | 1767729 | 1767571 | ID=cds.MS.gene40474.t1;Parent=MS.gene40474.t1 |
| chr5.3 | exon | 1767892 | 1768475 | 1767892 | ID=MS.gene40474.t1.exon4;Parent=MS.gene40474.t1 |
| chr5.3 | CDS | 1767892 | 1768475 | 1767892 | ID=cds.MS.gene40474.t1;Parent=MS.gene40474.t1 |
| Gene Sequence |
| Protein sequence |
