AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024838

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024838.t1 MTR_5g006710 97.521 363 9 0 1 363 1 363 0.0 740
MS.gene024838.t1 MTR_5g006670 87.360 356 45 0 8 363 4 359 0.0 654
MS.gene024838.t1 MTR_5g006800 84.022 363 52 1 7 363 7 369 0.0 640
MS.gene024838.t1 MTR_5g006780 83.014 365 54 2 7 363 7 371 0.0 625
MS.gene024838.t1 MTR_5g006750 79.726 365 66 2 7 363 7 371 0.0 604
MS.gene024838.t1 MTR_5g006740 78.177 362 73 1 8 363 4 365 0.0 598
MS.gene024838.t1 MTR_5g008040 76.902 368 79 1 1 362 3 370 0.0 597
MS.gene024838.t1 MTR_5g006740 74.309 362 70 2 8 363 4 348 0.0 552
MS.gene024838.t1 MTR_3g115600 70.787 356 102 1 10 363 8 363 0.0 539
MS.gene024838.t1 MTR_5g006720 70.667 375 66 3 6 363 5 352 0.0 526
MS.gene024838.t1 MTR_4g125470 53.243 370 154 3 12 362 19 388 1.08e-143 413
MS.gene024838.t1 MTR_5g006730 91.453 117 10 0 1 117 1 117 2.32e-74 227
MS.gene024838.t1 MTR_3g096570 88.710 62 7 0 169 230 8 69 1.35e-31 120
MS.gene024838.t1 MTR_3g096562 76.389 72 17 0 159 230 162 233 8.10e-30 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024838.t1 AT1G76690 72.087 369 97 1 1 363 3 371 0.0 565
MS.gene024838.t1 AT1G76680 71.545 369 99 2 1 363 1 369 0.0 563
MS.gene024838.t1 AT1G76680 67.005 394 99 3 1 363 1 394 0.0 549
MS.gene024838.t1 AT1G09400 69.753 324 98 0 18 341 1 324 1.07e-177 496
MS.gene024838.t1 AT1G09400 71.212 264 76 0 78 341 2 265 3.93e-146 414
MS.gene024838.t1 AT2G06050 51.688 385 163 3 1 362 1 385 1.02e-144 415
MS.gene024838.t1 AT2G06050 51.688 385 163 3 1 362 1 385 1.02e-144 415
MS.gene024838.t1 AT2G06050 51.688 385 163 3 1 362 1 385 1.02e-144 415
MS.gene024838.t1 AT1G17990 71.260 254 70 2 9 260 6 258 1.22e-135 387
MS.gene024838.t1 AT1G18020 71.260 254 70 2 9 260 6 258 1.22e-135 387
MS.gene024838.t1 AT1G17990 68.110 254 70 3 9 260 6 250 6.18e-127 365

Find 79 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTCAACAAGTATAAT+AGG 0.199028 5.1:+1398677 MS.gene024838:CDS
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.1:-1398646 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.244714 5.1:-1397304 None:intergenic
AAGGCAGATCTTGTAGTTTA+TGG 0.250368 5.1:+1398604 MS.gene024838:CDS
GTTGGAAGGGTTTCAAATTC+AGG 0.273882 5.1:+1397471 MS.gene024838:CDS
TAGGATCTCATTCTTGTTAG+TGG 0.316308 5.1:-1397234 None:intergenic
ATCCAAACACACCAGGTATA+TGG 0.318288 5.1:+1397364 MS.gene024838:CDS
GGCTTTCAATGGCACTTTCA+TGG 0.332359 5.1:+1398531 MS.gene024838:CDS
GTCCATATACCTGGTGTGTT+TGG 0.341076 5.1:-1397366 None:intergenic
CTCATTGGCACCAGACTGTA+AGG 0.356523 5.1:-1398505 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.1:+1398399 MS.gene024838:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.366938 5.1:-1398655 None:intergenic
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.1:-1398397 None:intergenic
GACATTCTATATTTCTGATC+CGG 0.394293 5.1:+1398702 MS.gene024838:CDS
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.1:+1398325 MS.gene024838:CDS
AAAGAATATTGTACTTATTG+AGG 0.409340 5.1:-1398429 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.410004 5.1:-1398520 None:intergenic
TATATTTCTGATCCGGTTGT+TGG 0.413679 5.1:+1398709 MS.gene024838:CDS
TTGAATTTGCCCATCATGTA+AGG 0.414262 5.1:-1397103 None:intergenic
GAACCGTTGTCGATTTCCTT+TGG 0.415853 5.1:+1398279 MS.gene024838:CDS
TGCTCTCAACAAGTATAATA+GGG 0.431497 5.1:+1398678 MS.gene024838:CDS
GTCAGATTTGGCATGTTGGA+AGG 0.432988 5.1:+1397457 MS.gene024838:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.1:-1398361 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 5.1:-1397863 None:intergenic
AACGACCGAACAGATGAATA+TGG 0.449164 5.1:+1398244 MS.gene024838:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.452427 5.1:+1397116 MS.gene024838:CDS
GACTCTAATCCAAATGCATT+GGG 0.453689 5.1:+1398388 MS.gene024838:CDS
AATGGCACTTTCATGGCTGC+AGG 0.454817 5.1:+1398538 MS.gene024838:CDS
AAGAATATTGTACTTATTGA+GGG 0.462924 5.1:-1398428 None:intergenic
TCTTCTTACACCTTACATGA+TGG 0.464882 5.1:+1397093 MS.gene024838:CDS
GGGTTGAGGAACATTGTTGT+AGG 0.466237 5.1:-1397253 None:intergenic
CTTCTCATAGCTGAAGCTAC+TGG 0.479639 5.1:+1397318 MS.gene024838:CDS
ATCCACCATATTCATCTGTT+CGG 0.480368 5.1:-1398249 None:intergenic
CAGTCTGGTGCCAATGAGAA+AGG 0.498444 5.1:+1398510 MS.gene024838:CDS
GAAATCGACAACGGTTCTCA+AGG 0.504808 5.1:-1398273 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.1:+1398387 MS.gene024838:CDS
TAGTCAGTGTAACCAACAAC+CGG 0.513490 5.1:-1398721 None:intergenic
GATTGAAAGCCCTTACAGTC+TGG 0.513661 5.1:+1398495 MS.gene024838:CDS
GAATAATACTTGACAGCAAT+GGG 0.514062 5.1:-1397273 None:intergenic
TCAGATTTGGCATGTTGGAA+GGG 0.515594 5.1:+1397458 MS.gene024838:CDS
GAAGCAGTTGTGAATGAGAT+AGG 0.516901 5.1:+1398310 MS.gene024838:CDS
TTTGATGGAGTTGAAATCCA+TGG 0.517258 5.1:+1398178 MS.gene024838:CDS
TACTTGACAGCAATGGGTTG+AGG 0.519656 5.1:-1397267 None:intergenic
TCATCTGTACTTAGCCGTCT+CGG 0.521373 5.1:-1397935 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.528070 5.1:-1398213 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5.1:+1397992 MS.gene024838:CDS
TGAATAATACTTGACAGCAA+TGG 0.535636 5.1:-1397274 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.535658 5.1:+1398187 MS.gene024838:CDS
TTCTGTCAGATTTGGCATGT+TGG 0.537785 5.1:+1397453 MS.gene024838:CDS
GACTTGTCAGTAGAAGATAT+CGG 0.550201 5.1:-1397878 None:intergenic
CTTCTTACACCTTACATGAT+GGG 0.552493 5.1:+1397094 MS.gene024838:CDS
CAATGCTATAGCTGAAAACA+AGG 0.556236 5.1:+1398585 MS.gene024838:CDS
TGCTCTTTAGTCCATATACC+TGG 0.556652 5.1:-1397375 None:intergenic
TCATGAACCGCATCTACGAT+AGG 0.560519 5.1:-1397414 None:intergenic
TATTCACAGAGAACCTCTAA+AGG 0.566712 5.1:+1397291 MS.gene024838:CDS
CCAATGAGAAAGGCTTTCAA+TGG 0.567256 5.1:+1398520 MS.gene024838:CDS
CAATATTCTTTACTGTCACA+TGG 0.576936 5.1:+1398441 MS.gene024838:CDS
AACAATTCACGAAACCGAGA+CGG 0.589361 5.1:+1397921 MS.gene024838:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.1:-1398195 None:intergenic
TCATTGGCACCAGACTGTAA+GGG 0.602205 5.1:-1398504 None:intergenic
GGAGGCTATGACAGACAAGA+CGG 0.604358 5.1:+1398559 MS.gene024838:CDS
ATCATGTAAGGTGTAAGAAG+AGG 0.609327 5.1:-1397091 None:intergenic
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.1:-1398295 None:intergenic
AAATCGACAACGGTTCTCAA+GGG 0.613592 5.1:-1398272 None:intergenic
GGTGTCTCAGACACTGCTCA+AGG 0.615730 5.1:+1397339 MS.gene024838:CDS
GAGGCTATGACAGACAAGAC+GGG 0.616560 5.1:+1398560 MS.gene024838:CDS
CAAGGCTATCCAAACACACC+AGG 0.616594 5.1:+1397357 MS.gene024838:CDS
GGCACTTTCATGGCTGCAGG+AGG 0.627009 5.1:+1398541 MS.gene024838:CDS
CGAACAGTTTATCAGCCGAA+TGG 0.629394 5.1:+1397848 MS.gene024838:intron
GTAGATGCGGTTCATGACAA+AGG 0.633675 5.1:+1397420 MS.gene024838:CDS
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.1:+1398364 MS.gene024838:CDS
CTAAAGAGCAAGTTGAGGCG+TGG 0.641191 5.1:+1397388 MS.gene024838:CDS
GACCGAACAGATGAATATGG+TGG 0.642811 5.1:+1398247 MS.gene024838:CDS
TCACAGAGAACCTCTAAAGG+TGG 0.662878 5.1:+1397294 MS.gene024838:CDS
GTGGAAACCTATCGTAGATG+CGG 0.678720 5.1:+1397407 MS.gene024838:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.1:+1398444 MS.gene024838:CDS
ATGGACTAAAGAGCAAGTTG+AGG 0.687634 5.1:+1397383 MS.gene024838:CDS
CTTCCAAAGGAAATCGACAA+CGG 0.701023 5.1:-1398282 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.732511 5.1:+1397423 MS.gene024838:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATGAAAATAAAAGT+TGG + chr5.1:1397529-1397548 MS.gene024838:intron 10.0%
!! AAATAGAATAGAAAGTTAAA+TGG - chr5.1:1397155-1397174 None:intergenic 15.0%
!! AAAGAATATTGTACTTATTG+AGG - chr5.1:1398432-1398451 None:intergenic 20.0%
!! AAGAATATTGTACTTATTGA+GGG - chr5.1:1398431-1398450 None:intergenic 20.0%
!! ATAGTAAACTGAATATGATT+TGG + chr5.1:1397702-1397721 MS.gene024838:intron 20.0%
!! ATTATTGAGTATTACTATCA+AGG + chr5.1:1397735-1397754 MS.gene024838:intron 20.0%
!! TAGTAAACTGAATATGATTT+GGG + chr5.1:1397703-1397722 MS.gene024838:intron 20.0%
!!! ATTGAAGCATTTTTCAATTT+CGG - chr5.1:1398043-1398062 None:intergenic 20.0%
!!! TCAAATATAACATGCTTTTT+AGG + chr5.1:1397646-1397665 MS.gene024838:intron 20.0%
! AGGCATTAATCAAATAACTT+AGG + chr5.1:1397666-1397685 MS.gene024838:intron 25.0%
! ATTCAGTTTACTATCAATGA+TGG - chr5.1:1397696-1397715 None:intergenic 25.0%
!! ATTGATGATCTTAACCAATT+TGG - chr5.1:1397587-1397606 None:intergenic 25.0%
!! GTATATTTTTCTGTCAGATT+TGG + chr5.1:1397445-1397464 MS.gene024838:CDS 25.0%
!! TTGATGATCTTAACCAATTT+GGG - chr5.1:1397586-1397605 None:intergenic 25.0%
!!! TTGAAGCATTTTTCAATTTC+GGG - chr5.1:1398042-1398061 None:intergenic 25.0%
AAGCATGTTATATTTGAGCT+AGG - chr5.1:1397643-1397662 None:intergenic 30.0%
ATCTCCTAACATAATCAATG+TGG + chr5.1:1398141-1398160 MS.gene024838:intron 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.1:1398441-1398460 MS.gene024838:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.1:1398216-1398235 None:intergenic 30.0%
GAATAATACTTGACAGCAAT+GGG - chr5.1:1397276-1397295 None:intergenic 30.0%
GGTAATGCTAAAATTATGCT+AGG - chr5.1:1397622-1397641 None:intergenic 30.0%
TGAATAATACTTGACAGCAA+TGG - chr5.1:1397277-1397296 None:intergenic 30.0%
TGCTCTCAACAAGTATAATA+GGG + chr5.1:1398678-1398697 MS.gene024838:CDS 30.0%
! AAACTGAATATGATTTGGGT+TGG + chr5.1:1397707-1397726 MS.gene024838:intron 30.0%
! AACCACTTTCTAATGTTTTG+AGG + chr5.1:1397761-1397780 MS.gene024838:intron 30.0%
! CATCATTTTCAGAGTTGTTT+TGG + chr5.1:1397209-1397228 MS.gene024838:intron 30.0%
! GACATTCTATATTTCTGATC+CGG + chr5.1:1398702-1398721 MS.gene024838:CDS 30.0%
!! AAAATAAAAGTTGGTGTGAG+CGG + chr5.1:1397538-1397557 MS.gene024838:intron 30.0%
!! ATTTGTTGCTTTAATGCACA+AGG + chr5.1:1398107-1398126 MS.gene024838:intron 30.0%
!! TCAGAAGCTGATTTTATTCT+TGG - chr5.1:1398472-1398491 None:intergenic 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.1:1398399-1398418 MS.gene024838:CDS 35.0%
AAGGCAGATCTTGTAGTTTA+TGG + chr5.1:1398604-1398623 MS.gene024838:CDS 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.1:1398387-1398406 MS.gene024838:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.1:1398400-1398419 None:intergenic 35.0%
ATCAATGTGGTGCAAATTGA+AGG + chr5.1:1398154-1398173 MS.gene024838:intron 35.0%
ATCATGTAAGGTGTAAGAAG+AGG - chr5.1:1397094-1397113 None:intergenic 35.0%
ATCCACCATATTCATCTGTT+CGG - chr5.1:1398252-1398271 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.1:1398004-1398023 MS.gene024838:intron 35.0%
CAATGCTATAGCTGAAAACA+AGG + chr5.1:1398585-1398604 MS.gene024838:CDS 35.0%
CTGCTCTCAACAAGTATAAT+AGG + chr5.1:1398677-1398696 MS.gene024838:CDS 35.0%
CTTCTTACACCTTACATGAT+GGG + chr5.1:1397094-1397113 MS.gene024838:CDS 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.1:1398364-1398383 None:intergenic 35.0%
GACCTCAAAACATTAGAAAG+TGG - chr5.1:1397766-1397785 None:intergenic 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.1:1398388-1398407 MS.gene024838:CDS 35.0%
GACTTGTCAGTAGAAGATAT+CGG - chr5.1:1397881-1397900 None:intergenic 35.0%
GATAAACTGTTCGATTCACA+AGG - chr5.1:1397841-1397860 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG - chr5.1:1398658-1398677 None:intergenic 35.0%
TAGGATCTCATTCTTGTTAG+TGG - chr5.1:1397237-1397256 None:intergenic 35.0%
TATTCACAGAGAACCTCTAA+AGG + chr5.1:1397291-1397310 MS.gene024838:CDS 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.1:1398444-1398463 MS.gene024838:CDS 35.0%
TCTTCTTACACCTTACATGA+TGG + chr5.1:1397093-1397112 MS.gene024838:CDS 35.0%
TTGAATTTGCCCATCATGTA+AGG - chr5.1:1397106-1397125 None:intergenic 35.0%
TTTGATGGAGTTGAAATCCA+TGG + chr5.1:1398178-1398197 MS.gene024838:CDS 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.1:1398364-1398383 MS.gene024838:CDS 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.1:1397116-1397135 MS.gene024838:CDS 35.0%
! TATATTTCTGATCCGGTTGT+TGG + chr5.1:1398709-1398728 MS.gene024838:CDS 35.0%
! TGCACCACATTGATTATGTT+AGG - chr5.1:1398148-1398167 None:intergenic 35.0%
!! GTGCAAATTGAAGGTTTTGA+TGG + chr5.1:1398163-1398182 MS.gene024838:intron 35.0%
AAATCGACAACGGTTCTCAA+GGG - chr5.1:1398275-1398294 None:intergenic 40.0%
AACAATTCACGAAACCGAGA+CGG + chr5.1:1397921-1397940 MS.gene024838:CDS 40.0%
AACGACCGAACAGATGAATA+TGG + chr5.1:1398244-1398263 MS.gene024838:CDS 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.1:1398298-1398317 None:intergenic 40.0%
ATCCAAACACACCAGGTATA+TGG + chr5.1:1397364-1397383 MS.gene024838:CDS 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.1:1398520-1398539 MS.gene024838:CDS 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.1:1398523-1398542 None:intergenic 40.0%
CTTCCAAAGGAAATCGACAA+CGG - chr5.1:1398285-1398304 None:intergenic 40.0%
GAAGCAGTTGTGAATGAGAT+AGG + chr5.1:1398310-1398329 MS.gene024838:CDS 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.1:1398325-1398344 MS.gene024838:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.1:1398649-1398668 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.1:1397992-1398011 MS.gene024838:CDS 40.0%
GTTGGAAGGGTTTCAAATTC+AGG + chr5.1:1397471-1397490 MS.gene024838:CDS 40.0%
TAGTCAGTGTAACCAACAAC+CGG - chr5.1:1398724-1398743 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5.1:1397307-1397326 None:intergenic 40.0%
TCAGATTTGGCATGTTGGAA+GGG + chr5.1:1397458-1397477 MS.gene024838:CDS 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.1:1397378-1397397 None:intergenic 40.0%
TTCTGTCAGATTTGGCATGT+TGG + chr5.1:1397453-1397472 MS.gene024838:CDS 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG + chr5.1:1397383-1397402 MS.gene024838:CDS 40.0%
!! CTGAATATGATTTGGGTTGG+AGG + chr5.1:1397710-1397729 MS.gene024838:intron 40.0%
CCATCTGTGTCAACCCAAAT+TGG + chr5.1:1397570-1397589 MS.gene024838:intron 45.0%
CGAACAGTTTATCAGCCGAA+TGG + chr5.1:1397848-1397867 MS.gene024838:intron 45.0%
CTTCTCATAGCTGAAGCTAC+TGG + chr5.1:1397318-1397337 MS.gene024838:CDS 45.0%
GAAATCGACAACGGTTCTCA+AGG - chr5.1:1398276-1398295 None:intergenic 45.0%
GACCGAACAGATGAATATGG+TGG + chr5.1:1398247-1398266 MS.gene024838:CDS 45.0%
GATTGAAAGCCCTTACAGTC+TGG + chr5.1:1398495-1398514 MS.gene024838:CDS 45.0%
GGCTTTCAATGGCACTTTCA+TGG + chr5.1:1398531-1398550 MS.gene024838:CDS 45.0%
GGGTTGAGGAACATTGTTGT+AGG - chr5.1:1397256-1397275 None:intergenic 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.1:1397420-1397439 MS.gene024838:CDS 45.0%
GTCAGATTTGGCATGTTGGA+AGG + chr5.1:1397457-1397476 MS.gene024838:CDS 45.0%
GTCCATATACCTGGTGTGTT+TGG - chr5.1:1397369-1397388 None:intergenic 45.0%
GTGGAAACCTATCGTAGATG+CGG + chr5.1:1397407-1397426 MS.gene024838:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.1:1398187-1398206 MS.gene024838:CDS 45.0%
TCATCTGTACTTAGCCGTCT+CGG - chr5.1:1397938-1397957 None:intergenic 45.0%
TCATGAACCGCATCTACGAT+AGG - chr5.1:1397417-1397436 None:intergenic 45.0%
TCATTGGCACCAGACTGTAA+GGG - chr5.1:1398507-1398526 None:intergenic 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr5.1:1397866-1397885 None:intergenic 45.0%
! TCACAGAGAACCTCTAAAGG+TGG + chr5.1:1397294-1397313 MS.gene024838:CDS 45.0%
!! CCAATTTGGGTTGACACAGA+TGG - chr5.1:1397573-1397592 None:intergenic 45.0%
!! GAACCGTTGTCGATTTCCTT+TGG + chr5.1:1398279-1398298 MS.gene024838:CDS 45.0%
!! TAAAAGTTGGTGTGAGCGGA+AGG + chr5.1:1397542-1397561 MS.gene024838:intron 45.0%
!! TACTTGACAGCAATGGGTTG+AGG - chr5.1:1397270-1397289 None:intergenic 45.0%
AATGGCACTTTCATGGCTGC+AGG + chr5.1:1398538-1398557 MS.gene024838:CDS 50.0%
CAAGGCTATCCAAACACACC+AGG + chr5.1:1397357-1397376 MS.gene024838:CDS 50.0%
CTCATTGGCACCAGACTGTA+AGG - chr5.1:1398508-1398527 None:intergenic 50.0%
GAGGCTATGACAGACAAGAC+GGG + chr5.1:1398560-1398579 MS.gene024838:CDS 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.1:1397423-1397442 MS.gene024838:CDS 50.0%
GGAGGCTATGACAGACAAGA+CGG + chr5.1:1398559-1398578 MS.gene024838:CDS 50.0%
! CAGTCTGGTGCCAATGAGAA+AGG + chr5.1:1398510-1398529 MS.gene024838:CDS 50.0%
! CTAAAGAGCAAGTTGAGGCG+TGG + chr5.1:1397388-1397407 MS.gene024838:CDS 50.0%
GGTGTCTCAGACACTGCTCA+AGG + chr5.1:1397339-1397358 MS.gene024838:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.1:1398198-1398217 None:intergenic 55.0%
GGCACTTTCATGGCTGCAGG+AGG + chr5.1:1398541-1398560 MS.gene024838:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1397061 1398759 1397061 ID=MS.gene024838
chr5.1 mRNA 1397061 1398759 1397061 ID=MS.gene024838.t1;Parent=MS.gene024838
chr5.1 exon 1397061 1397137 1397061 ID=MS.gene024838.t1.exon1;Parent=MS.gene024838.t1
chr5.1 CDS 1397061 1397137 1397061 ID=cds.MS.gene024838.t1;Parent=MS.gene024838.t1
chr5.1 exon 1397221 1397492 1397221 ID=MS.gene024838.t1.exon2;Parent=MS.gene024838.t1
chr5.1 CDS 1397221 1397492 1397221 ID=cds.MS.gene024838.t1;Parent=MS.gene024838.t1
chr5.1 exon 1397855 1398013 1397855 ID=MS.gene024838.t1.exon3;Parent=MS.gene024838.t1
chr5.1 CDS 1397855 1398013 1397855 ID=cds.MS.gene024838.t1;Parent=MS.gene024838.t1
chr5.1 exon 1398176 1398759 1398176 ID=MS.gene024838.t1.exon4;Parent=MS.gene024838.t1
chr5.1 CDS 1398176 1398759 1398176 ID=cds.MS.gene024838.t1;Parent=MS.gene024838.t1
Gene Sequence

>MS.gene024838

ATGGAAGCTGCTAACATCACTGATTCAATTCCTCTTCTTACACCTTACATGATGGGCAAATTCAATCTAGCTCATAGGTACATACTACATACCATTTAACTTTCTATTCTATTTTATTTTAATGTTTTGCTCTTGCTAAATAATTTCACATCATTTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCCTACAACAATGTTCCTCAACCCATTGCTGTCAAGTATTATTCACAGAGAACCTCTAAAGGTGGTCTTCTCATAGCTGAAGCTACTGGTGTCTCAGACACTGCTCAAGGCTATCCAAACACACCAGGTATATGGACTAAAGAGCAAGTTGAGGCGTGGAAACCTATCGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCAAATTCAGGTATATCATGTTTATTTCATCATATCATTATCATTATTTATTATGAAAATAAAAGTTGGTGTGAGCGGAAGGTCTCACCATCTGTGTCAACCCAAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTAGCATTACCTAGCTCAAATATAACATGCTTTTTAGGCATTAATCAAATAACTTAGGTCTACCATCATTGATAGTAAACTGAATATGATTTGGGTTGGAGGTTATTATTGAGTATTACTATCAAGGTGTAACCACTTTCTAATGTTTTGAGGTCTACTCACATTTATGCAAATAGAATACTCACTCAATGTATGTTCATGTTTTTTCCTTGTGAATCGAACAGTTTATCAGCCGAATGGACAAGCACCGATATCTTCTACTGACAAGTCACTCACAAGCAATGATGTACAACAATTCACGAAACCGAGACGGCTAAGTACAGATGAAATTTCTCATATTGTCAATGATTTCAGACTTGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACAAACGCCCGAAATTGAAAAATGCTTCAATCATATTCATAGTATACAATATTAATATTTTTAACAAAAATGACTATTTGTTGCTTTAATGCACAAGGACATTTTTCAAATCTCCTAACATAATCAATGTGGTGCAAATTGAAGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATCAAGTGAACGACCGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGTGAATGAGATAGGAGCAGATAAAGTTGGAATTAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCCCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGCTTCTGAAACGATTGAAAGCCCTTACAGTCTGGTGCCAATGAGAAAGGCTTTCAATGGCACTTTCATGGCTGCAGGAGGCTATGACAGACAAGACGGGATCAATGCTATAGCTGAAAACAAGGCAGATCTTGTAGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCACTTAATGCTGCTCTCAACAAGTATAATAGGGAGACATTCTATATTTCTGATCCGGTTGTTGGTTACACTGACTATCCATTTCTCGAATGA
Protein sequence

>MS.gene024838.t1

MEAANITDSIPLLTPYMMGKFNLAHRVVLAPLTRMRSYNNVPQPIAVKYYSQRTSKGGLLIAEATGVSDTAQGYPNTPGIWTKEQVEAWKPIVDAVHDKGGIFFCQIWHVGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLSTDEISHIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDQVNDRTDEYGGSLENRCRFPLEVVEAVVNEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSASETIESPYSLVPMRKAFNGTFMAAGGYDRQDGINAIAENKADLVVYGRLFLANPDLPKRFALNAALNKYNRETFYISDPVVGYTDYPFLE