AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21804

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21804.t1 MTR_5g006800 96.206 369 14 0 1 369 1 369 0.0 738
MS.gene21804.t1 MTR_5g006780 92.183 371 27 1 1 369 1 371 0.0 713
MS.gene21804.t1 MTR_5g006750 86.523 371 48 1 1 369 1 371 0.0 674
MS.gene21804.t1 MTR_5g008040 81.522 368 68 0 1 368 3 370 0.0 638
MS.gene21804.t1 MTR_5g006670 84.110 365 52 1 5 369 1 359 0.0 637
MS.gene21804.t1 MTR_5g006740 81.644 365 67 0 5 369 1 365 0.0 635
MS.gene21804.t1 MTR_5g006710 82.920 363 56 1 7 369 7 363 0.0 630
MS.gene21804.t1 MTR_5g006740 78.356 365 62 1 5 369 1 348 0.0 593
MS.gene21804.t1 MTR_5g006720 72.414 377 66 2 4 369 3 352 0.0 554
MS.gene21804.t1 MTR_3g115600 70.556 360 102 1 10 369 8 363 0.0 541
MS.gene21804.t1 MTR_4g125470 53.100 371 159 4 12 368 19 388 6.06e-140 404
MS.gene21804.t1 MTR_5g006730 82.906 117 20 0 1 117 1 117 1.52e-66 207
MS.gene21804.t1 MTR_3g096570 74.359 78 17 1 175 252 8 82 2.96e-31 119
MS.gene21804.t1 MTR_3g096562 67.857 84 24 1 165 248 162 242 1.12e-29 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21804.t1 AT1G76690 76.965 369 85 0 1 369 3 371 0.0 606
MS.gene21804.t1 AT1G76680 76.111 360 86 0 10 369 10 369 0.0 591
MS.gene21804.t1 AT1G76680 71.169 385 86 1 10 369 10 394 0.0 577
MS.gene21804.t1 AT1G09400 70.000 330 93 1 18 347 1 324 3.66e-178 498
MS.gene21804.t1 AT1G09400 71.111 270 72 1 78 347 2 265 8.26e-145 411
MS.gene21804.t1 AT1G17990 71.595 257 68 2 10 266 7 258 1.12e-137 393
MS.gene21804.t1 AT1G18020 71.595 257 68 2 10 266 7 258 1.12e-137 393
MS.gene21804.t1 AT2G06050 51.200 375 164 4 12 368 12 385 1.70e-135 392
MS.gene21804.t1 AT2G06050 51.200 375 164 4 12 368 12 385 1.70e-135 392
MS.gene21804.t1 AT2G06050 51.200 375 164 4 12 368 12 385 1.70e-135 392
MS.gene21804.t1 AT1G17990 68.482 257 68 3 10 266 7 250 6.07e-129 370

Find 102 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.2:-1455631 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5.2:-1455382 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5.2:+1455384 MS.gene21804:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5.2:-1455454 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5.2:-1455381 None:intergenic
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5.2:+1453948 MS.gene21804:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5.2:+1454103 MS.gene21804:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5.2:+1455523 MS.gene21804:CDS
CTCTTCTAAACAAGTATAAC+AGG 0.315308 5.2:+1455662 MS.gene21804:CDS
GTTAATGCCCTCAATAAATA+TGG 0.323996 5.2:+1455406 MS.gene21804:CDS
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5.2:+1455694 MS.gene21804:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5.2:-1455490 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5.2:-1454105 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5.2:-1454043 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5.2:+1455372 MS.gene21804:CDS
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5.2:-1455505 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5.2:+1455516 MS.gene21804:CDS
CGGTTCCTTCATTCAAGAAA+AGG 0.387744 5.2:-1455730 None:intergenic
TCATGAACAGCATCTACAAT+AGG 0.392438 5.2:-1454153 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5.2:+1455569 MS.gene21804:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.400602 5.2:-1455640 None:intergenic
GATATTGGTGCTTGCCCATC+CGG 0.412505 5.2:-1454829 None:intergenic
GTGCAAATTGCAGGATTTGA+TGG 0.415677 5.2:+1455148 MS.gene21804:intron
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5.2:+1455264 MS.gene21804:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5.2:-1454946 None:intergenic
AAAGAATACCATATTTATTG+AGG 0.434046 5.2:-1455414 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5.2:-1454919 None:intergenic
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5.2:-1455518 None:intergenic
GTAAATTCAATCTATCTCAT+AGG 0.447316 5.2:+1453832 MS.gene21804:CDS
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5.2:-1454067 None:intergenic
TTCTGTCAAATTTGGCATGT+TGG 0.454703 5.2:+1454192 MS.gene21804:CDS
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5.2:+1455310 MS.gene21804:CDS
TGCAAATTGCAGGATTTGAT+GGG 0.460687 5.2:+1455149 MS.gene21804:intron
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5.2:-1455491 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5.2:+1455373 MS.gene21804:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5.2:+1455544 MS.gene21804:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5.2:-1454023 None:intergenic
TAAGGGGTAAGAAGTGGAAT+GGG 0.478175 5.2:-1453801 None:intergenic
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5.2:-1455706 None:intergenic
AGGGCAAACCTAGTTGTATA+TGG 0.487476 5.2:+1455589 MS.gene21804:CDS
AAGAATACCATATTTATTGA+GGG 0.490058 5.2:-1455413 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5.2:+1454127 MS.gene21804:CDS
CATTCTGCATACTCTGCAAA+AGG 0.500218 5.2:-1455346 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5.2:-1455377 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5.2:+1455295 MS.gene21804:CDS
GGTTCCTTCATTCAAGAAAA+GGG 0.501597 5.2:-1455729 None:intergenic
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.2:-1454006 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5.2:+1455495 MS.gene21804:CDS
GTAAGGGGTAAGAAGTGGAA+TGG 0.507283 5.2:-1453802 None:intergenic
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5.2:+1455215 MS.gene21804:CDS
GTATAACCTAGAACTGGATC+AGG 0.517171 5.2:-1455700 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.2:+1454976 MS.gene21804:CDS
GGCTTGTCTGTGGAAGATAT+TGG 0.523697 5.2:-1454844 None:intergenic
GTTGGAAGAGTTTCTGATGC+TGG 0.526670 5.2:+1454210 MS.gene21804:CDS
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5.2:+1455254 MS.gene21804:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5.2:+1455163 MS.gene21804:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5.2:-1455198 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5.2:+1455172 MS.gene21804:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5.2:-1455258 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5.2:-1454916 None:intergenic
AAACCACAAGTTCGAAGTAA+TGG 0.538687 5.2:+1454871 MS.gene21804:CDS
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5.2:-1454076 None:intergenic
TCACACCACCAAGGCGGCTA+AGG 0.540861 5.2:+1454911 MS.gene21804:CDS
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5.2:+1454810 MS.gene21804:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5.2:+1454815 MS.gene21804:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5.2:+1455229 MS.gene21804:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5.2:+1454814 MS.gene21804:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5.2:+1454030 MS.gene21804:CDS
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5.2:-1455498 None:intergenic
ATACCATTACTTCGAACTTG+TGG 0.557902 5.2:-1454874 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5.2:+1454057 MS.gene21804:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5.2:+1454096 MS.gene21804:CDS
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5.2:+1455505 MS.gene21804:CDS
TGGTATTCTTTATTGTCACA+TGG 0.580029 5.2:+1455426 MS.gene21804:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5.2:-1455489 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5.2:+1455526 MS.gene21804:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.2:-1455180 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5.2:+1455349 MS.gene21804:CDS
CTCACAAGACAAAGATCCTA+CGG 0.598712 5.2:+1453976 MS.gene21804:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5.2:+1453762 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5.2:+1455150 MS.gene21804:intron
CAACGCCATAGCTGAAAACA+GGG 0.620130 5.2:+1455570 MS.gene21804:CDS
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5.2:-1455267 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5.2:+1454078 MS.gene21804:CDS
ACAAACGACCATATACAACT+AGG 0.624309 5.2:-1455597 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5.2:-1455257 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5.2:-1454114 None:intergenic
GTAGATGCTGTTCATGACAA+AGG 0.628826 5.2:+1454159 MS.gene21804:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5.2:+1455545 MS.gene21804:CDS
TATTCTTTATTGTCACATGG+TGG 0.639708 5.2:+1455429 MS.gene21804:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5.2:-1453973 None:intergenic
GACAGGACAGATGAGTATGG+TGG 0.649651 5.2:+1455232 MS.gene21804:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5.2:+1454095 MS.gene21804:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5.2:-1453992 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5.2:+1454033 MS.gene21804:CDS
GAGTAATAGAGGATAGCATG+AGG 0.689366 5.2:-1454012 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5.2:+1455451 MS.gene21804:CDS
TCTTCTAAACAAGTATAACA+GGG 0.693801 5.2:+1455663 MS.gene21804:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5.2:+1454902 MS.gene21804:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5.2:+1454122 MS.gene21804:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5.2:+1454905 MS.gene21804:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5.2:+1454162 MS.gene21804:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAGTAAAA+GGG + chr5.2:1454655-1454674 MS.gene21804:intron 15.0%
!! AAAGAATACCATATTTATTG+AGG - chr5.2:1455417-1455436 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5.2:1454385-1454404 MS.gene21804:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5.2:1455416-1455435 None:intergenic 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5.2:1454508-1454527 MS.gene21804:intron 20.0%
!! AATTATGTAACATACTTAGT+AGG + chr5.2:1455125-1455144 MS.gene21804:intron 20.0%
!! ATTATGTAACATACTTAGTA+GGG + chr5.2:1455126-1455145 MS.gene21804:intron 20.0%
!! CTAATATTGTTTACAGTAAA+AGG + chr5.2:1454654-1454673 MS.gene21804:intron 20.0%
!! TACTAAGTATGTTACATAAT+TGG - chr5.2:1455126-1455145 None:intergenic 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5.2:1454699-1454718 MS.gene21804:intron 20.0%
!!! TGAATTTACACATTTTGTAA+GGG - chr5.2:1453821-1453840 None:intergenic 20.0%
!!! TTGAATTTACACATTTTGTA+AGG - chr5.2:1453822-1453841 None:intergenic 20.0%
! ACATGACATAAAACATAAAC+GGG + chr5.2:1454386-1454405 MS.gene21804:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5.2:1454806-1454825 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5.2:1455385-1455404 None:intergenic 25.0%
! GTAAATTCAATCTATCTCAT+AGG + chr5.2:1453832-1453851 MS.gene21804:CDS 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5.2:1454698-1454717 MS.gene21804:intron 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5.2:1455384-1455403 MS.gene21804:CDS 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5.2:1455384-1455403 None:intergenic 25.0%
! TCTTCTAAACAAGTATAACA+GGG + chr5.2:1455663-1455682 MS.gene21804:CDS 25.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5.2:1453891-1453910 None:intergenic 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5.2:1454700-1454719 MS.gene21804:intron 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5.2:1453948-1453967 MS.gene21804:intron 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5.2:1454615-1454634 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5.2:1454613-1454632 MS.gene21804:intron 25.0%
!! GAATTTACACATTTTGTAAG+GGG - chr5.2:1453820-1453839 None:intergenic 25.0%
!! GTGTATTTTTCTGTCAAATT+TGG + chr5.2:1454184-1454203 MS.gene21804:CDS 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5.2:1455086-1455105 MS.gene21804:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5.2:1454450-1454469 None:intergenic 25.0%
ATCACGCATAAATGTTCTAA+TGG + chr5.2:1454747-1454766 MS.gene21804:intron 30.0%
CATGACATAAAACATAAACG+GGG + chr5.2:1454387-1454406 MS.gene21804:intron 30.0%
CTCTTCTAAACAAGTATAAC+AGG + chr5.2:1455662-1455681 MS.gene21804:CDS 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5.2:1454454-1454473 MS.gene21804:intron 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.2:1455201-1455220 None:intergenic 30.0%
GAGTAAATAACACAAACACA+TGG - chr5.2:1453928-1453947 None:intergenic 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5.2:1455406-1455425 MS.gene21804:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5.2:1454701-1454720 MS.gene21804:intron 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5.2:1455429-1455448 MS.gene21804:CDS 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5.2:1455215-1455234 MS.gene21804:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5.2:1455426-1455445 MS.gene21804:CDS 30.0%
! TTACAGTAAAAGGGTATGAT+TGG + chr5.2:1454664-1454683 MS.gene21804:intron 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5.2:1454429-1454448 None:intergenic 30.0%
AAACCACAAGTTCGAAGTAA+TGG + chr5.2:1454871-1454890 MS.gene21804:CDS 35.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5.2:1454464-1454483 MS.gene21804:intron 35.0%
ACAAACGACCATATACAACT+AGG - chr5.2:1455600-1455619 None:intergenic 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5.2:1454291-1454310 None:intergenic 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5.2:1454321-1454340 MS.gene21804:intron 35.0%
ATACCATTACTTCGAACTTG+TGG - chr5.2:1454877-1454896 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5.2:1454810-1454829 MS.gene21804:intron 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5.2:1454949-1454968 None:intergenic 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5.2:1455451-1455470 MS.gene21804:CDS 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5.2:1455709-1455728 None:intergenic 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5.2:1455457-1455476 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5.2:1454156-1454175 None:intergenic 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.2:1455149-1455168 MS.gene21804:intron 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5.2:1454192-1454211 MS.gene21804:CDS 35.0%
! ATTTTGTAAGGGGTAAGAAG+TGG - chr5.2:1453810-1453829 None:intergenic 35.0%
! CATTCAGTTTTCCTCACTTA+AGG - chr5.2:1454554-1454573 None:intergenic 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5.2:1454516-1454535 MS.gene21804:intron 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5.2:1454298-1454317 MS.gene21804:intron 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5.2:1455093-1455112 MS.gene21804:intron 35.0%
AATGACAGGACAGATGAGTA+TGG + chr5.2:1455229-1455248 MS.gene21804:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5.2:1455372-1455391 MS.gene21804:CDS 40.0%
AGGGCAAACCTAGTTGTATA+TGG + chr5.2:1455589-1455608 MS.gene21804:CDS 40.0%
CACACATGTTACCTTAAGTG+AGG + chr5.2:1454540-1454559 MS.gene21804:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5.2:1454316-1454335 None:intergenic 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5.2:1455349-1455368 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5.2:1453976-1453995 MS.gene21804:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.2:1455295-1455314 MS.gene21804:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5.2:1455373-1455392 MS.gene21804:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5.2:1455310-1455329 MS.gene21804:CDS 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5.2:1455545-1455564 MS.gene21804:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5.2:1454015-1454034 None:intergenic 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.2:1455634-1455653 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.2:1455150-1455169 MS.gene21804:intron 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.2:1454976-1454995 MS.gene21804:CDS 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5.2:1455643-1455662 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5.2:1454159-1454178 MS.gene21804:CDS 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5.2:1455703-1455722 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.2:1455148-1455167 MS.gene21804:intron 40.0%
TAAGGGGTAAGAAGTGGAAT+GGG - chr5.2:1453804-1453823 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5.2:1453976-1453995 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5.2:1454046-1454065 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5.2:1454117-1454136 None:intergenic 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5.2:1454902-1454921 MS.gene21804:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.2:1455163-1455182 MS.gene21804:CDS 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5.2:1455349-1455368 MS.gene21804:CDS 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5.2:1455521-1455540 None:intergenic 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5.2:1455380-1455399 None:intergenic 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5.2:1454287-1454306 MS.gene21804:intron 40.0%
!!! CTTCGAACTTGTGGTTTTAG+TGG - chr5.2:1454868-1454887 None:intergenic 40.0%
AAACCGACAACGGTTCTCAA+GGG - chr5.2:1455260-1455279 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5.2:1454281-1454300 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5.2:1454905-1454924 MS.gene21804:CDS 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5.2:1454815-1454834 MS.gene21804:intron 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5.2:1455570-1455589 MS.gene21804:CDS 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5.2:1455505-1455524 MS.gene21804:CDS 45.0%
CTTAGTAGGGTGCAAATTGC+AGG + chr5.2:1455139-1455158 MS.gene21804:intron 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5.2:1455270-1455289 None:intergenic 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5.2:1454162-1454181 MS.gene21804:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5.2:1455544-1455563 MS.gene21804:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+TGG - chr5.2:1454847-1454866 None:intergenic 45.0%
GTAAGGGGTAAGAAGTGGAA+TGG - chr5.2:1453805-1453824 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.2:1455172-1455191 MS.gene21804:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5.2:1454210-1454229 MS.gene21804:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5.2:1455694-1455713 MS.gene21804:CDS 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5.2:1454030-1454049 MS.gene21804:CDS 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.2:1454009-1454028 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5.2:1454814-1454833 MS.gene21804:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5.2:1455569-1455588 MS.gene21804:CDS 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5.2:1454026-1454045 None:intergenic 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5.2:1454122-1454141 MS.gene21804:CDS 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5.2:1455508-1455527 None:intergenic 45.0%
! GTTTGCCCTGTTTTCAGCTA+TGG - chr5.2:1455578-1455597 None:intergenic 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5.2:1455523-1455542 MS.gene21804:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5.2:1454265-1454284 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5.2:1454857-1454876 None:intergenic 45.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5.2:1455501-1455520 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5.2:1453995-1454014 None:intergenic 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5.2:1454103-1454122 MS.gene21804:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5.2:1455261-1455280 None:intergenic 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5.2:1454057-1454076 MS.gene21804:CDS 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5.2:1455232-1455251 MS.gene21804:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.2:1455254-1455273 MS.gene21804:CDS 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5.2:1454095-1454114 MS.gene21804:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5.2:1455494-1455513 None:intergenic 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5.2:1454079-1454098 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5.2:1455495-1455514 MS.gene21804:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5.2:1454127-1454146 MS.gene21804:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG - chr5.2:1454832-1454851 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5.2:1454033-1454052 MS.gene21804:CDS 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5.2:1455264-1455283 MS.gene21804:CDS 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5.2:1455516-1455535 MS.gene21804:CDS 50.0%
CAAGGCTATCCAAACACGCC+GGG + chr5.2:1454096-1454115 MS.gene21804:CDS 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5.2:1455493-1455512 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5.2:1455526-1455545 MS.gene21804:CDS 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5.2:1454078-1454097 MS.gene21804:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.2:1455183-1455202 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5.2:1454070-1454089 None:intergenic 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5.2:1454108-1454127 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5.2:1454922-1454941 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5.2:1455492-1455511 None:intergenic 55.0%
TCACACCACCAAGGCGGCTA+AGG + chr5.2:1454911-1454930 MS.gene21804:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5.2:1454919-1454938 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1453777 1455744 1453777 ID=MS.gene21804
chr5.2 mRNA 1453777 1455744 1453777 ID=MS.gene21804.t1;Parent=MS.gene21804
chr5.2 exon 1453777 1453853 1453777 ID=MS.gene21804.t1.exon1;Parent=MS.gene21804.t1
chr5.2 CDS 1453777 1453853 1453777 ID=cds.MS.gene21804.t1;Parent=MS.gene21804.t1
chr5.2 exon 1453960 1454231 1453960 ID=MS.gene21804.t1.exon2;Parent=MS.gene21804.t1
chr5.2 CDS 1453960 1454231 1453960 ID=cds.MS.gene21804.t1;Parent=MS.gene21804.t1
chr5.2 exon 1454821 1454997 1454821 ID=MS.gene21804.t1.exon3;Parent=MS.gene21804.t1
chr5.2 CDS 1454821 1454997 1454821 ID=cds.MS.gene21804.t1;Parent=MS.gene21804.t1
chr5.2 exon 1455161 1455744 1455161 ID=MS.gene21804.t1.exon4;Parent=MS.gene21804.t1
chr5.2 CDS 1455161 1455744 1455161 ID=cds.MS.gene21804.t1;Parent=MS.gene21804.t1
Gene Sequence

>MS.gene21804

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTACCCCTTACAAAATGTGTAAATTCAATCTATCTCATAGGTATTTTTATTATCTTTTCAATTCATTTATCATTCCATATTCAATTTCAATTGCTCAAATATTCACACACACCATGTGTTTGTGTTATTTACTCATTTCATTTCAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGGTGTATTTTTCTGTCAAATTTGGCATGTTGGAAGAGTTTCTGATGCTGGTATGCTCTATTTCATCAAATTATCATGAGCCAGTAAACAAAAGTACCGCGAGTTGCCACACAAGTATTGATTTGAGGTTTCCTTGTGGACTGAGTGAATTATGTGACTAGGAGTTATTCGTTTTTCTTTGCATACAATCGTGATATAGATTTAACATGACATAAAACATAAACGGGGACTTTGTTTATTTGAACCTATTACTCTGATTAAAATGCCTATGTCTTTAGTCAAAATGTAACTGCGGAAAGAATTGGTGTAAAATGCTATTAACAGTAAATATGATATGATATGTTCTAGGACAGTAGGACACACATGTTACCTTAAGTGAGGAAAACTGAATGATTAATTTGTAAATGTGTCATATTGCATTTGTTGTCAACCTGTTGTACAAATATACTTTTGGCATCGATTAAATAAAAGTCTAATATTGTTTACAGTAAAAGGGTATGATTGGAGTGAAAGATTGTTGTTATCGAGTATTATTAAGGGGGAAACTGCATTCTGATTTTTAGCTATCACGCATAAATGTTCTAATGGCTGTGATGTACAAGCTCATTGTATGCTCATTTTCCATGTTATTCTCAACAGTTTATCAGCCGGATGGGCAAGCACCAATATCTTCCACAGACAAGCCACTAAAACCACAAGTTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAACTTTACTAATCTTTACAAATGTCTCAAAAATTAAAAAAATTCTTTAATGTATCATAATACAATGTATTATGTATGTGAGACGTAGAGATTTTTGTTACTTTAGATGGCACTAGGACATTTTCCAATTATGTAACATACTTAGTAGGGTGCAAATTGCAGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAAACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCTTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>MS.gene21804.t1

MAGVVESDPIPLLTPYKMCKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGGVFFCQIWHVGRVSDAVYQPDGQAPISSTDKPLKPQVRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRANLVVYGRLFLANPDLPKRFALDALLNKYNRETFYVPDPVLGYTDYPFLE