AlfalfaGEDB | MS.gene21813

M. sativa cultivar XinJiangDaYe / MS.gene21813

KEGG: K05894
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00724.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21813.t1	XP_024639103.1	94.7	357	19	0	7	363	3	359	4.30E-199	703.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21813.t1	B9FSC8	76.3	358	79	1	11	362	6	363	2.3e-164	579.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21813.t1	G7K3R3	94.4	357	20	0	7	363	3	359	1.5e-198	701.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene21813	MS.gene21810	PPI
MS.gene21813	MS.gene024832	PPI
MS.gene21813	MS.gene001055	PPI
MS.gene21813	MS.gene024840	PPI
MS.gene21813	MS.gene46805	PPI
MS.gene21813	MS.gene039914	PPI
MS.gene001053	MS.gene21813	PPI
MS.gene21813	MS.gene21811	PPI
MS.gene21813	MS.gene001056	PPI
MS.gene21813	MS.gene024833	PPI
MS.gene21813	MS.gene001053	PPI
MS.gene21813	MS.gene024835	PPI
MS.gene21813	MS.gene21812	PPI
MS.gene21813	MS.gene97626	PPI
MS.gene21813	MS.gene21807	PPI
MS.gene21813	MS.gene21732	PPI
MS.gene058057	MS.gene21813	PPI
MS.gene024836	MS.gene21813	PPI
MS.gene21813	MS.gene024836	PPI
MS.gene21813	MS.gene24828	PPI
MS.gene21813	MS.gene21804	PPI
MS.gene21813	MS.gene40480	PPI
MS.gene21813	MS.gene058057	PPI
MS.gene21813	MS.gene26506	PPI
MS.gene21813	MS.gene001054	PPI
MS.gene21813	MS.gene28210	PPI
MS.gene001051	MS.gene21813	PPI
MS.gene024831	MS.gene21813	PPI
MS.gene21813	MS.gene051818	PPI
MS.gene21813	MS.gene001050	PPI
MS.gene21813	MS.gene40478	PPI
MS.gene50903	MS.gene21813	PPI
MS.gene21813	MS.gene60448	PPI
MS.gene21813	MS.gene40483	PPI
MS.gene21813	MS.gene019336	PPI
MS.gene21813	MS.gene50903	PPI
MS.gene21813	MS.gene016703	PPI
MS.gene40480	MS.gene21813	PPI
MS.gene001056	MS.gene21813	PPI
MS.gene21813	MS.gene40481	PPI
MS.gene21813	MS.gene012217	PPI
MS.gene21813	MS.gene001051	PPI
MS.gene21813	MS.gene024838	PPI
MS.gene21813	MS.gene23576	PPI
MS.gene21813	MS.gene40474	PPI
MS.gene21813	MS.gene40471	PPI
MS.gene21813	MS.gene057956	PPI
MS.gene21813	MS.gene024831	PPI
MS.gene21813	MS.gene79044	PPI
MS.gene21813	MS.gene024834	PPI
MS.gene21813	MS.gene82304	PPI
MS.gene21813	MS.gene21808	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21813.t1	MTR_5g006670	94.398	357	20	0	7	363	3	359	0.0	706
MS.gene21813.t1	MTR_5g006710	89.532	363	38	0	1	363	1	363	0.0	682
MS.gene21813.t1	MTR_5g006780	86.792	371	41	3	1	363	1	371	0.0	656
MS.gene21813.t1	MTR_5g006800	84.282	369	52	1	1	363	1	369	0.0	645
MS.gene21813.t1	MTR_5g006750	81.941	371	59	2	1	363	1	371	0.0	631
MS.gene21813.t1	MTR_5g006740	82.920	363	56	2	7	363	3	365	0.0	627
MS.gene21813.t1	MTR_5g008040	79.348	368	70	1	1	362	3	370	0.0	616
MS.gene21813.t1	MTR_5g006740	78.237	363	56	3	7	363	3	348	0.0	578
MS.gene21813.t1	MTR_5g006720	72.800	375	58	3	6	363	5	352	0.0	541
MS.gene21813.t1	MTR_3g115600	69.589	365	107	2	1	363	1	363	0.0	536
MS.gene21813.t1	MTR_4g125470	54.324	370	150	3	12	362	19	388	4.80e-144	414
MS.gene21813.t1	MTR_5g006730	82.759	116	20	0	1	116	1	116	1.29e-65	204
MS.gene21813.t1	MTR_3g096570	80.282	71	14	0	169	239	8	78	1.77e-32	122
MS.gene21813.t1	MTR_3g096562	70.370	81	24	0	159	239	162	242	1.13e-30	120

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21813.t1	AT1G76690	73.984	369	90	1	1	363	3	371	0.0	578
MS.gene21813.t1	AT1G76680	73.442	369	92	2	1	363	1	369	0.0	575
MS.gene21813.t1	AT1G76680	68.782	394	92	3	1	363	1	394	0.0	562
MS.gene21813.t1	AT1G09400	70.679	324	95	0	18	341	1	324	0.0	504
MS.gene21813.t1	AT1G09400	72.348	264	73	0	78	341	2	265	1.63e-147	417
MS.gene21813.t1	AT2G06050	50.909	385	166	3	1	362	1	385	6.52e-140	403
MS.gene21813.t1	AT2G06050	50.909	385	166	3	1	362	1	385	6.52e-140	403
MS.gene21813.t1	AT2G06050	50.909	385	166	3	1	362	1	385	6.52e-140	403
MS.gene21813.t1	AT1G17990	71.318	258	71	2	5	260	2	258	3.67e-138	394
MS.gene21813.t1	AT1G18020	71.318	258	71	2	5	260	2	258	3.67e-138	394
MS.gene21813.t1	AT1G17990	68.217	258	71	3	5	260	2	250	1.37e-129	372

Find 88 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAAATCTCTTTGGCAAATC+TGG	0.203120	5.2:-1376521	None:intergenic
CAATGAATTGGGACTTTATA+TGG	0.204033	5.2:+1376274	MS.gene21813:CDS
AGGGCAGATCTTGTTGTTTA+TGG	0.218911	5.2:+1376479	MS.gene21813:CDS
TCAATGCTATAGCAGAAAAT+AGG	0.227212	5.2:+1376459	MS.gene21813:CDS
CTCCTCTTAACAAGTATAAT+AGG	0.228308	5.2:+1376552	MS.gene21813:CDS
GTTGGAAGAGTTTCTAATTC+AGG	0.270001	5.2:+1375333	MS.gene21813:CDS
CTGAAGTCATTGACAATATC+AGG	0.283543	5.2:-1375843	None:intergenic
TGATCCGGTTGTTGGTTATA+CGG	0.296277	5.2:+1376592	MS.gene21813:CDS
AGATAGGAGCAGAGAGAGTT+GGG	0.321147	5.2:+1376201	MS.gene21813:CDS
AACGGCACTTTCATGGTTGC+AGG	0.326217	5.2:+1376413	MS.gene21813:CDS
TATAAGAAGACCACCTTTAG+AGG	0.341560	5.2:-1375166	None:intergenic
CTCATTGGCACCAGGCTGTA+AGG	0.342562	5.2:-1376380	None:intergenic
ATCCAGACACCCCAGGTATA+TGG	0.350122	5.2:+1375226	MS.gene21813:CDS
CATATAAAGTCCCAATTCAT+TGG	0.355579	5.2:-1376273	None:intergenic
CTCACTAGAATAAGATCTTA+TGG	0.357208	5.2:+1375099	MS.gene21813:CDS
AGACTCCAATCCCAATGAAT+TGG	0.357975	5.2:+1376262	MS.gene21813:CDS
GGCTTTCAACGGCACTTTCA+TGG	0.358796	5.2:+1376406	MS.gene21813:CDS
GTCCATATACCTGGGGTGTC+TGG	0.359717	5.2:-1375228	None:intergenic
TCCCTATTATACTTGTTAAG+AGG	0.369675	5.2:-1376554	None:intergenic
TCATCTGTCCCAAGCCTTCT+CGG	0.370065	5.2:-1375816	None:intergenic
CTTTCTGCATATTGTGCAAA+AGG	0.371976	5.2:-1376236	None:intergenic
GCATTGAGAGCAAATCTCTT+TGG	0.376749	5.2:-1376530	None:intergenic
TTTGATGGTGTTGAAATTCA+TGG	0.380570	5.2:+1376053	MS.gene21813:CDS
TTCTCGCCACCGAGAAGGCT+TGG	0.394985	5.2:+1375807	MS.gene21813:CDS
TACATTTCTGATCCGGTTGT+TGG	0.398433	5.2:+1376584	MS.gene21813:CDS
TTGAATTTGCCCATCTTGTA+AGG	0.401075	5.2:-1374965	None:intergenic
GAGATAGGAGCAGAGAGAGT+TGG	0.402112	5.2:+1376200	MS.gene21813:CDS
TCCTCTTAACAAGTATAATA+GGG	0.406224	5.2:+1376553	MS.gene21813:CDS
AGGACCTTTGAGAGTAATAG+AGG	0.421466	5.2:-1375146	None:intergenic
AACATTCTACATTTCTGATC+CGG	0.427062	5.2:+1376577	MS.gene21813:CDS
CAATGCTATAGCAGAAAATA+GGG	0.432026	5.2:+1376460	MS.gene21813:CDS
CAAATCGACATCGGTTCTCT+AGG	0.437051	5.2:-1376148	None:intergenic
GATATCGGTGCTTGTCCATT+CGG	0.438814	5.2:-1375744	None:intergenic
GACTCCAATCCCAATGAATT+GGG	0.447639	5.2:+1376263	MS.gene21813:CDS
CCGTTGAAAGCCTTTCTCAT+TGG	0.453741	5.2:-1376395	None:intergenic
TCTCGCCACCGAGAAGGCTT+GGG	0.456272	5.2:+1375808	MS.gene21813:CDS
AAGTCCCAATTCATTGGGAT+TGG	0.463512	5.2:-1376267	None:intergenic
TGTTCTTTAGTCCATATACC+TGG	0.469521	5.2:-1375237	None:intergenic
ATATAAAGTCCCAATTCATT+GGG	0.478824	5.2:-1376272	None:intergenic
GTCGGATACACCAGTAGCTT+CGG	0.479603	5.2:-1375190	None:intergenic
GTTCTTTAGTCCATATACCT+GGG	0.484371	5.2:-1375236	None:intergenic
TCTTCTTACACCTTACAAGA+TGG	0.486533	5.2:+1374955	MS.gene21813:CDS
TAGAGGACAGCATGAGGTTG+AGG	0.488275	5.2:-1375129	None:intergenic
AAGCCTTTCTCATTGGCACC+AGG	0.488795	5.2:-1376388	None:intergenic
TCATTGGCACCAGGCTGTAA+GGG	0.490492	5.2:-1376379	None:intergenic
CAGCCTGGTGCCAATGAGAA+AGG	0.498444	5.2:+1376385	MS.gene21813:CDS
CTTCTTATAGCCGAAGCTAC+TGG	0.505350	5.2:+1375180	MS.gene21813:CDS
GAACCGATGTCGATTTGCAT+TGG	0.506354	5.2:+1376154	MS.gene21813:CDS
CTGTCCTCTATTACTCTCAA+AGG	0.511507	5.2:+1375142	MS.gene21813:CDS
CAATATTCTTTATTGTCACA+TGG	0.513287	5.2:+1376316	MS.gene21813:CDS
TAAGGTGTAAGAAGAGGAAT+GGG	0.514396	5.2:-1374947	None:intergenic
GAAGCTGTTGTGAATGAGAT+AGG	0.516901	5.2:+1376185	MS.gene21813:CDS
ATGCCAAATCTGACAAAAGA+AGG	0.517640	5.2:-1375310	None:intergenic
GGAGGTTATGACAGACAAGA+TGG	0.517730	5.2:+1376434	MS.gene21813:CDS
GTAGATGCTGTTCATGCTAA+AGG	0.523692	5.2:+1375282	MS.gene21813:CDS
TTCTTTAGTCCATATACCTG+GGG	0.525207	5.2:-1375235	None:intergenic
GACTTGTCTGTAGAAGATAT+CGG	0.525444	5.2:-1375759	None:intergenic
GCATGAACAGCATCTACGAT+AGG	0.526602	5.2:-1375276	None:intergenic
GCAAGAAATGCTATTGAAGC+TGG	0.528089	5.2:+1375873	MS.gene21813:CDS
GTAAGGTGTAAGAAGAGGAA+TGG	0.528759	5.2:-1374948	None:intergenic
TACTCTCAAAGGTCCTCTAA+AGG	0.530036	5.2:+1375153	MS.gene21813:CDS
CTTTCATGAATTGTTCAAGT+AGG	0.530510	5.2:-1376088	None:intergenic
AATTGAAAGCCCTTACAGCC+TGG	0.535825	5.2:+1376370	MS.gene21813:CDS
CTTCTTACACCTTACAAGAT+GGG	0.542433	5.2:+1374956	MS.gene21813:CDS
TGGATACCCTTGAGCTGTGT+CGG	0.553060	5.2:-1375208	None:intergenic
AAAATTTCTCGCCACCGAGA+AGG	0.568748	5.2:+1375802	MS.gene21813:CDS
GGTGTATCCGACACAGCTCA+AGG	0.574972	5.2:+1375201	MS.gene21813:CDS
TAGTCCGTATAACCAACAAC+CGG	0.576852	5.2:-1376596	None:intergenic
AGCTTCAATAGCATTTCTTG+CGG	0.576970	5.2:-1375871	None:intergenic
AAATCGACATCGGTTCTCTA+GGG	0.579801	5.2:-1376147	None:intergenic
AATGACAGAACAGATGAATA+CGG	0.588235	5.2:+1376119	MS.gene21813:CDS
GCAAATTCAATCTCTCTCAC+AGG	0.589325	5.2:+1374978	MS.gene21813:CDS
GTTGAAATTCATGGAGCTCA+TGG	0.595308	5.2:+1376062	MS.gene21813:CDS
CAAGGGTATCCAGACACCCC+AGG	0.595672	5.2:+1375219	MS.gene21813:CDS
TAAGATCTTATTCTAGTGAG+TGG	0.606661	5.2:-1375096	None:intergenic
CCAATGAGAAAGGCTTTCAA+CGG	0.607890	5.2:+1376395	MS.gene21813:CDS
GGCACTTTCATGGTTGCAGG+AGG	0.608579	5.2:+1376416	MS.gene21813:CDS
GAGGTTATGACAGACAAGAT+GGG	0.609791	5.2:+1376435	MS.gene21813:CDS
ATCTTGTAAGGTGTAAGAAG+AGG	0.620167	5.2:-1374953	None:intergenic
CTAAAGAACAAGTTGAGGCG+TGG	0.626475	5.2:+1375250	MS.gene21813:CDS
TATTCTTTATTGTCACATGG+TGG	0.626954	5.2:+1376319	MS.gene21813:CDS
ATGGACTAAAGAACAAGTTG+AGG	0.637344	5.2:+1375245	MS.gene21813:CDS
TCTCAAAGGTCCTCTAAAGG+TGG	0.638482	5.2:+1375156	MS.gene21813:CDS
GAGTAATAGAGGACAGCATG+AGG	0.651668	5.2:-1375135	None:intergenic
CTTCCAATGCAAATCGACAT+CGG	0.652380	5.2:-1376157	None:intergenic
GTGTATCCGACACAGCTCAA+GGG	0.660265	5.2:+1375202	MS.gene21813:CDS
GACAGAACAGATGAATACGG+TGG	0.702185	5.2:+1376122	MS.gene21813:CDS
TCTGTCCCAAGCCTTCTCGG+TGG	0.708391	5.2:-1375813	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATCTTCAAATTATATA+AGG	-	chr5.2:1375372-1375391	None:intergenic	10.0%
!!	AGAAATACTAAAAAAAATAA+CGG	-	chr5.2:1375615-1375634	None:intergenic	10.0%
!!	ATACAAATAAAATACTAACT+CGG	+	chr5.2:1375690-1375709	MS.gene21813:intron	15.0%
!!!	AATTTGAAGATTATTTTAGT+TGG	+	chr5.2:1375377-1375396	MS.gene21813:intron	15.0%
!!!	ATTGAAATTGAAAGTATAAT+AGG	-	chr5.2:1375006-1375025	None:intergenic	15.0%
!!!	CTAAAAAAAATAACGGATTT+AGG	-	chr5.2:1375608-1375627	None:intergenic	20.0%
!!!	TCAGTATTTGATTTTATTCT+TGG	-	chr5.2:1376347-1376366	None:intergenic	20.0%
!!!	TTAGTATTTCTACTACTAAA+GGG	+	chr5.2:1375624-1375643	MS.gene21813:intron	20.0%
!!!	TTTAGTATTTCTACTACTAA+AGG	+	chr5.2:1375623-1375642	MS.gene21813:intron	20.0%
!	ATATAAAGTCCCAATTCATT+GGG	-	chr5.2:1376275-1376294	None:intergenic	25.0%
!	CAATATTCTTTATTGTCACA+TGG	+	chr5.2:1376316-1376335	MS.gene21813:CDS	25.0%
!	TCCTCTTAACAAGTATAATA+GGG	+	chr5.2:1376553-1376572	MS.gene21813:CDS	25.0%
!!!	AAGACTATTTGTTGCTTTAA+AGG	+	chr5.2:1375974-1375993	MS.gene21813:intron	25.0%
!!!	AGACTATTTGTTGCTTTAAA+GGG	+	chr5.2:1375975-1375994	MS.gene21813:intron	25.0%
!!!	ATTTAGGTTGTGTATAATCA+CGG	-	chr5.2:1375592-1375611	None:intergenic	25.0%
!!!	TTGAAGATTATTTTAGTTGG+AGG	+	chr5.2:1375380-1375399	MS.gene21813:intron	25.0%
	AACATTCTACATTTCTGATC+CGG	+	chr5.2:1376577-1376596	MS.gene21813:CDS	30.0%
	AATGACAGAACAGATGAATA+CGG	+	chr5.2:1376119-1376138	MS.gene21813:CDS	30.0%
	CAATGAATTGGGACTTTATA+TGG	+	chr5.2:1376274-1376293	MS.gene21813:CDS	30.0%
	CAATGCTATAGCAGAAAATA+GGG	+	chr5.2:1376460-1376479	MS.gene21813:CDS	30.0%
	CATATAAAGTCCCAATTCAT+TGG	-	chr5.2:1376276-1376295	None:intergenic	30.0%
	CTCACTAGAATAAGATCTTA+TGG	+	chr5.2:1375099-1375118	MS.gene21813:CDS	30.0%
	CTCCTCTTAACAAGTATAAT+AGG	+	chr5.2:1376552-1376571	MS.gene21813:CDS	30.0%
	CTTTCATGAATTGTTCAAGT+AGG	-	chr5.2:1376091-1376110	None:intergenic	30.0%
	TAAGATCTTATTCTAGTGAG+TGG	-	chr5.2:1375099-1375118	None:intergenic	30.0%
	TATTCTTTATTGTCACATGG+TGG	+	chr5.2:1376319-1376338	MS.gene21813:CDS	30.0%
	TCAATGCTATAGCAGAAAAT+AGG	+	chr5.2:1376459-1376478	MS.gene21813:CDS	30.0%
	TGGAGGTTGTTTATTATTGT+TGG	+	chr5.2:1375397-1375416	MS.gene21813:intron	30.0%
!	TCCCTATTATACTTGTTAAG+AGG	-	chr5.2:1376557-1376576	None:intergenic	30.0%
!!	TGATTGAAGTACTTTTCGTT+TGG	-	chr5.2:1375926-1375945	None:intergenic	30.0%
!!	TTTGATGGTGTTGAAATTCA+TGG	+	chr5.2:1376053-1376072	MS.gene21813:CDS	30.0%
	AAAACCTGTTGGGAATAACA+TGG	-	chr5.2:1375721-1375740	None:intergenic	35.0%
	AGCTTCAATAGCATTTCTTG+CGG	-	chr5.2:1375874-1375893	None:intergenic	35.0%
	ATCTTGTAAGGTGTAAGAAG+AGG	-	chr5.2:1374956-1374975	None:intergenic	35.0%
	ATGCCAAATCTGACAAAAGA+AGG	-	chr5.2:1375313-1375332	None:intergenic	35.0%
	CAAAACTGTCCGATCAATAT+TGG	-	chr5.2:1375541-1375560	None:intergenic	35.0%
	CTGAAGTCATTGACAATATC+AGG	-	chr5.2:1375846-1375865	None:intergenic	35.0%
	CTTCTTACACCTTACAAGAT+GGG	+	chr5.2:1374956-1374975	MS.gene21813:CDS	35.0%
	CTTTCTGCATATTGTGCAAA+AGG	-	chr5.2:1376239-1376258	None:intergenic	35.0%
	GACTTGTCTGTAGAAGATAT+CGG	-	chr5.2:1375762-1375781	None:intergenic	35.0%
	GAGGTTAATTAGCAAAGACA+AGG	-	chr5.2:1375053-1375072	None:intergenic	35.0%
	GTTCTTTAGTCCATATACCT+GGG	-	chr5.2:1375239-1375258	None:intergenic	35.0%
	GTTGGAAGAGTTTCTAATTC+AGG	+	chr5.2:1375333-1375352	MS.gene21813:CDS	35.0%
	TAAGGTGTAAGAAGAGGAAT+GGG	-	chr5.2:1374950-1374969	None:intergenic	35.0%
	TATAAGAAGACCACCTTTAG+AGG	-	chr5.2:1375169-1375188	None:intergenic	35.0%
	TCTTCTTACACCTTACAAGA+TGG	+	chr5.2:1374955-1374974	MS.gene21813:CDS	35.0%
	TGTTCTTTAGTCCATATACC+TGG	-	chr5.2:1375240-1375259	None:intergenic	35.0%
	TTCTTTAGTCCATATACCTG+GGG	-	chr5.2:1375238-1375257	None:intergenic	35.0%
	TTGAATTTGCCCATCTTGTA+AGG	-	chr5.2:1374968-1374987	None:intergenic	35.0%
!	AAAACAACTCTGAAAATGGG+AGG	-	chr5.2:1375072-1375091	None:intergenic	35.0%
!	ATGGACTAAAGAACAAGTTG+AGG	+	chr5.2:1375245-1375264	MS.gene21813:CDS	35.0%
!	CTACCTTCTTTTGTCAGATT+TGG	+	chr5.2:1375307-1375326	MS.gene21813:CDS	35.0%
!	GCCAAAACAACTCTGAAAAT+GGG	-	chr5.2:1375075-1375094	None:intergenic	35.0%
!	TCCCATTTTCAGAGTTGTTT+TGG	+	chr5.2:1375071-1375090	MS.gene21813:intron	35.0%
!	TGCCAAAACAACTCTGAAAA+TGG	-	chr5.2:1375076-1375095	None:intergenic	35.0%
!	TTTTGTCAGATTTGGCATGT+TGG	+	chr5.2:1375315-1375334	MS.gene21813:CDS	35.0%
!!	ATGCAAATTGCAGGTTTTGA+TGG	+	chr5.2:1376038-1376057	MS.gene21813:intron	35.0%
	AAGTCCCAATTCATTGGGAT+TGG	-	chr5.2:1376270-1376289	None:intergenic	40.0%
	AGACTCCAATCCCAATGAAT+TGG	+	chr5.2:1376262-1376281	MS.gene21813:CDS	40.0%
	ATGTCCATGTTATTCCCAAC+AGG	+	chr5.2:1375714-1375733	MS.gene21813:intron	40.0%
	CCAATGAGAAAGGCTTTCAA+CGG	+	chr5.2:1376395-1376414	MS.gene21813:CDS	40.0%
	CCAGTCTGTCCAATATTGAT+CGG	+	chr5.2:1375529-1375548	MS.gene21813:intron	40.0%
	CTCAATGTGATGCAAATTGC+AGG	+	chr5.2:1376029-1376048	MS.gene21813:intron	40.0%
	CTGTCCTCTATTACTCTCAA+AGG	+	chr5.2:1375142-1375161	MS.gene21813:CDS	40.0%
	CTTCCAATGCAAATCGACAT+CGG	-	chr5.2:1376160-1376179	None:intergenic	40.0%
	GAAGCTGTTGTGAATGAGAT+AGG	+	chr5.2:1376185-1376204	MS.gene21813:CDS	40.0%
	GACTCCAATCCCAATGAATT+GGG	+	chr5.2:1376263-1376282	MS.gene21813:CDS	40.0%
	GAGGTTATGACAGACAAGAT+GGG	+	chr5.2:1376435-1376454	MS.gene21813:CDS	40.0%
	GCAAATCTCTTTGGCAAATC+TGG	-	chr5.2:1376524-1376543	None:intergenic	40.0%
	GCAAATTCAATCTCTCTCAC+AGG	+	chr5.2:1374978-1374997	MS.gene21813:CDS	40.0%
	GCAAGAAATGCTATTGAAGC+TGG	+	chr5.2:1375873-1375892	MS.gene21813:CDS	40.0%
	GCATTGAGAGCAAATCTCTT+TGG	-	chr5.2:1376533-1376552	None:intergenic	40.0%
	GTAAGGTGTAAGAAGAGGAA+TGG	-	chr5.2:1374951-1374970	None:intergenic	40.0%
	GTAGATGCTGTTCATGCTAA+AGG	+	chr5.2:1375282-1375301	MS.gene21813:CDS	40.0%
	GTTGAAATTCATGGAGCTCA+TGG	+	chr5.2:1376062-1376081	MS.gene21813:CDS	40.0%
	TACATTTCTGATCCGGTTGT+TGG	+	chr5.2:1376584-1376603	MS.gene21813:CDS	40.0%
	TACTCTCAAAGGTCCTCTAA+AGG	+	chr5.2:1375153-1375172	MS.gene21813:CDS	40.0%
	TAGTCCGTATAACCAACAAC+CGG	-	chr5.2:1376599-1376618	None:intergenic	40.0%
!	AGGACCTTTGAGAGTAATAG+AGG	-	chr5.2:1375149-1375168	None:intergenic	40.0%
!	TGATCCGGTTGTTGGTTATA+CGG	+	chr5.2:1376592-1376611	MS.gene21813:CDS	40.0%
!!	AAATCGACATCGGTTCTCTA+GGG	-	chr5.2:1376150-1376169	None:intergenic	40.0%
!!	AATGGGATCAGCAGTTTTAG+CGG	-	chr5.2:1374933-1374952	None:intergenic	40.0%
!!	AGGGCAGATCTTGTTGTTTA+TGG	+	chr5.2:1376479-1376498	MS.gene21813:CDS	40.0%
!!	TTGTTGCTTTAAAGGGCACA+AGG	+	chr5.2:1375982-1376001	MS.gene21813:intron	40.0%
	AAAATTTCTCGCCACCGAGA+AGG	+	chr5.2:1375802-1375821	MS.gene21813:CDS	45.0%
	AATTGAAAGCCCTTACAGCC+TGG	+	chr5.2:1376370-1376389	MS.gene21813:CDS	45.0%
	AGATAGGAGCAGAGAGAGTT+GGG	+	chr5.2:1376201-1376220	MS.gene21813:CDS	45.0%
	CATTCGGCTGAAAACCTGTT+GGG	-	chr5.2:1375731-1375750	None:intergenic	45.0%
	CCGATCAATATTGGACAGAC+TGG	-	chr5.2:1375532-1375551	None:intergenic	45.0%
	CCGTTGAAAGCCTTTCTCAT+TGG	-	chr5.2:1376398-1376417	None:intergenic	45.0%
	CTAGACAACCGATCTTGATG+TGG	-	chr5.2:1375459-1375478	None:intergenic	45.0%
	CTTCTTATAGCCGAAGCTAC+TGG	+	chr5.2:1375180-1375199	MS.gene21813:CDS	45.0%
	GACAGAACAGATGAATACGG+TGG	+	chr5.2:1376122-1376141	MS.gene21813:CDS	45.0%
	GAGTAATAGAGGACAGCATG+AGG	-	chr5.2:1375138-1375157	None:intergenic	45.0%
	GCAGTCAACCACATCAAGAT+CGG	+	chr5.2:1375448-1375467	MS.gene21813:intron	45.0%
	GCATGAACAGCATCTACGAT+AGG	-	chr5.2:1375279-1375298	None:intergenic	45.0%
	GGAGGTTATGACAGACAAGA+TGG	+	chr5.2:1376434-1376453	MS.gene21813:CDS	45.0%
!	CTAAAGAACAAGTTGAGGCG+TGG	+	chr5.2:1375250-1375269	MS.gene21813:CDS	45.0%
!	GATATCGGTGCTTGTCCATT+CGG	-	chr5.2:1375747-1375766	None:intergenic	45.0%
!	TCTCAAAGGTCCTCTAAAGG+TGG	+	chr5.2:1375156-1375175	MS.gene21813:CDS	45.0%
!!	CAAATCGACATCGGTTCTCT+AGG	-	chr5.2:1376151-1376170	None:intergenic	45.0%
!!	GAACCGATGTCGATTTGCAT+TGG	+	chr5.2:1376154-1376173	MS.gene21813:CDS	45.0%
	AACGGCACTTTCATGGTTGC+AGG	+	chr5.2:1376413-1376432	MS.gene21813:CDS	50.0%
	AAGCCTTTCTCATTGGCACC+AGG	-	chr5.2:1376391-1376410	None:intergenic	50.0%
	ATCCAGACACCCCAGGTATA+TGG	+	chr5.2:1375226-1375245	MS.gene21813:CDS	50.0%
	CCATTCGGCTGAAAACCTGT+TGG	-	chr5.2:1375732-1375751	None:intergenic	50.0%
	GAGATAGGAGCAGAGAGAGT+TGG	+	chr5.2:1376200-1376219	MS.gene21813:CDS	50.0%
	GGCTTTCAACGGCACTTTCA+TGG	+	chr5.2:1376406-1376425	MS.gene21813:CDS	50.0%
	GTCGGATACACCAGTAGCTT+CGG	-	chr5.2:1375193-1375212	None:intergenic	50.0%
	GTGTATCCGACACAGCTCAA+GGG	+	chr5.2:1375202-1375221	MS.gene21813:CDS	50.0%
	TAGAGGACAGCATGAGGTTG+AGG	-	chr5.2:1375132-1375151	None:intergenic	50.0%
	TCATCTGTCCCAAGCCTTCT+CGG	-	chr5.2:1375819-1375838	None:intergenic	50.0%
	TCATTGGCACCAGGCTGTAA+GGG	-	chr5.2:1376382-1376401	None:intergenic	50.0%
	TGGATACCCTTGAGCTGTGT+CGG	-	chr5.2:1375211-1375230	None:intergenic	50.0%
!	CCAACAGGTTTTCAGCCGAA+TGG	+	chr5.2:1375729-1375748	MS.gene21813:intron	50.0%
	CTCATTGGCACCAGGCTGTA+AGG	-	chr5.2:1376383-1376402	None:intergenic	55.0%
	GGCACTTTCATGGTTGCAGG+AGG	+	chr5.2:1376416-1376435	MS.gene21813:CDS	55.0%
	GGTGTATCCGACACAGCTCA+AGG	+	chr5.2:1375201-1375220	MS.gene21813:CDS	55.0%
!	CAGCCTGGTGCCAATGAGAA+AGG	+	chr5.2:1376385-1376404	MS.gene21813:CDS	55.0%
!	GTCCATATACCTGGGGTGTC+TGG	-	chr5.2:1375231-1375250	None:intergenic	55.0%
	TCTCGCCACCGAGAAGGCTT+GGG	+	chr5.2:1375808-1375827	MS.gene21813:CDS	60.0%
	TCTGTCCCAAGCCTTCTCGG+TGG	-	chr5.2:1375816-1375835	None:intergenic	60.0%
	TTCTCGCCACCGAGAAGGCT+TGG	+	chr5.2:1375807-1375826	MS.gene21813:CDS	60.0%
!!	CAAGGGTATCCAGACACCCC+AGG	+	chr5.2:1375219-1375238	MS.gene21813:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	1374923	1376634	1374923	ID=MS.gene21813
chr5.2	mRNA	1374923	1376634	1374923	ID=MS.gene21813.t1;Parent=MS.gene21813
chr5.2	exon	1374923	1374999	1374923	ID=MS.gene21813.t1.exon1;Parent=MS.gene21813.t1
chr5.2	CDS	1374923	1374999	1374923	ID=cds.MS.gene21813.t1;Parent=MS.gene21813.t1
chr5.2	exon	1375083	1375354	1375083	ID=MS.gene21813.t1.exon2;Parent=MS.gene21813.t1
chr5.2	CDS	1375083	1375354	1375083	ID=cds.MS.gene21813.t1;Parent=MS.gene21813.t1
chr5.2	exon	1375736	1375894	1375736	ID=MS.gene21813.t1.exon3;Parent=MS.gene21813.t1
chr5.2	CDS	1375736	1375894	1375736	ID=cds.MS.gene21813.t1;Parent=MS.gene21813.t1
chr5.2	exon	1376051	1376634	1376051	ID=MS.gene21813.t1.exon4;Parent=MS.gene21813.t1
chr5.2	CDS	1376051	1376634	1376051	ID=cds.MS.gene21813.t1;Parent=MS.gene21813.t1

Gene Sequence

>MS.gene21813

ATGGAAGCCGCTAAAACTGCTGATCCCATTCCTCTTCTTACACCTTACAAGATGGGCAAATTCAATCTCTCTCACAGGTACCTATTATACTTTCAATTTCAATATTCTATTTCAATATCAATGCTTACCTTGTCTTTGCTAATTAACCTCCCATTTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCTTATGGCAATGTTCCTCAACCTCATGCTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCCGAAGCTACTGGTGTATCCGACACAGCTCAAGGGTATCCAGACACCCCAGGTATATGGACTAAAGAACAAGTTGAGGCGTGGAAACCTATCGTAGATGCTGTTCATGCTAAAGGTGCTACCTTCTTTTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCAGGTATGTATTTATTTCCTTATATAATTTGAAGATTATTTTAGTTGGAGGTTGTTTATTATTGTTGGATTTCGATTGTTTGTAGTGTGCGTGCATGCAGTCAACCACATCAAGATCGGTTGTCTAGATTTCAATGCAAATTTTGACTTTTTAAATCTAAATTCTTGAGCTTGAAATCCAGTCTGTCCAATATTGATCGGACAGTTTTGACATGTCTGAATAAATGCAGTCACAACTCCGTGATTATACACAACCTAAATCCGTTATTTTTTTTAGTATTTCTACTACTAAAGGGTGATTGCTTTCTGATTTTTTAAGTAATATATATGCACACATTTATACAAATAAAATACTAACTCGGTATGTCCATGTTATTCCCAACAGGTTTTCAGCCGAATGGACAAGCACCGATATCTTCTACAGACAAGTCACTCACAAGCAATGATTTTGAAAATTTCTCGCCACCGAGAAGGCTTGGGACAGATGAAATTCCTGATATTGTCAATGACTTCAGACTCGCCGCAAGAAATGCTATTGAAGCTGGTAAGTTTGTTGATCTTTACAAATTTATCCAAACGAAAAGTACTTCAATCATAGTACAATACTGATATTTTTTAGAAACAAGACTATTTGTTGCTTTAAAGGGCACAAGGACATTTTGAAAATCAACTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATACGGTGGATCCCTAGAGAACCGATGTCGATTTGCATTGGAAGTTGTTGAAGCTGTTGTGAATGAGATAGGAGCAGAGAGAGTTGGGATTAGACTATCACCTTTTGCACAATATGCAGAAAGTGAAGACTCCAATCCCAATGAATTGGGACTTTATATGGCTAATGCTCTCAATAAATACAATATTCTTTATTGTCACATGGTGGAACCAAGAATAAAATCAAATACTGAAACAATTGAAAGCCCTTACAGCCTGGTGCCAATGAGAAAGGCTTTCAACGGCACTTTCATGGTTGCAGGAGGTTATGACAGACAAGATGGGATCAATGCTATAGCAGAAAATAGGGCAGATCTTGTTGTTTATGGTCGTTTATTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCTCTCAATGCTCCTCTTAACAAGTATAATAGGGAAACATTCTACATTTCTGATCCGGTTGTTGGTTATACGGACTATCCATTTCTTGAATGA

Protein sequence

>MS.gene21813.t1

MEAAKTADPIPLLTPYKMGKFNLSHRVVLAPLTRIRSYGNVPQPHAVLYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGATFFCQIWHVGRVSNSGFQPNGQAPISSTDKSLTSNDFENFSPPRRLGTDEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVVNEIGAERVGIRLSPFAQYAESEDSNPNELGLYMANALNKYNILYCHMVEPRIKSNTETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIAENRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE