AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001051

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001051.t1 MTR_5g006710 97.796 363 8 0 1 363 1 363 0.0 742
MS.gene001051.t1 MTR_5g006670 86.777 363 44 1 1 363 1 359 0.0 656
MS.gene001051.t1 MTR_5g006800 84.298 363 51 1 7 363 7 369 0.0 642
MS.gene001051.t1 MTR_5g006780 83.288 365 53 2 7 363 7 371 0.0 627
MS.gene001051.t1 MTR_5g006750 80.000 365 65 2 7 363 7 371 0.0 607
MS.gene001051.t1 MTR_5g008040 77.446 368 77 1 1 362 3 370 0.0 601
MS.gene001051.t1 MTR_5g006740 78.453 362 72 1 8 363 4 365 0.0 600
MS.gene001051.t1 MTR_5g006740 74.586 362 69 2 8 363 4 348 0.0 554
MS.gene001051.t1 MTR_3g115600 70.506 356 103 1 10 363 8 363 0.0 536
MS.gene001051.t1 MTR_5g006720 71.200 375 64 3 6 363 5 352 0.0 531
MS.gene001051.t1 MTR_4g125470 53.784 370 152 3 12 362 19 388 1.16e-145 418
MS.gene001051.t1 MTR_5g006730 91.453 117 10 0 1 117 1 117 4.95e-74 226
MS.gene001051.t1 MTR_3g096570 78.873 71 15 0 169 239 8 78 1.41e-31 120
MS.gene001051.t1 MTR_3g096562 76.389 72 17 0 159 230 162 233 8.43e-30 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001051.t1 AT1G76690 72.358 369 96 1 1 363 3 371 0.0 567
MS.gene001051.t1 AT1G76680 71.816 369 98 2 1 363 1 369 0.0 565
MS.gene001051.t1 AT1G76680 67.259 394 98 3 1 363 1 394 0.0 551
MS.gene001051.t1 AT1G09400 70.062 324 97 0 18 341 1 324 2.09e-178 498
MS.gene001051.t1 AT1G09400 71.591 264 75 0 78 341 2 265 4.22e-147 416
MS.gene001051.t1 AT2G06050 51.948 385 162 3 1 362 1 385 1.54e-145 417
MS.gene001051.t1 AT2G06050 51.948 385 162 3 1 362 1 385 1.54e-145 417
MS.gene001051.t1 AT2G06050 51.948 385 162 3 1 362 1 385 1.54e-145 417
MS.gene001051.t1 AT1G17990 71.654 254 69 2 9 260 6 258 3.46e-136 389
MS.gene001051.t1 AT1G18020 71.654 254 69 2 9 260 6 258 3.46e-136 389
MS.gene001051.t1 AT1G17990 68.504 254 69 3 9 260 6 250 2.29e-127 366

Find 80 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.4:-2348823 None:intergenic
CTCCTCTCAACAAGTATAAT+AGG 0.238760 5.4:+2348854 MS.gene001051:CDS
TATGAGAAGACCACCTTTAG+AGG 0.244714 5.4:-2347487 None:intergenic
AAGGCAGATCTTGTAGTTTA+TGG 0.250368 5.4:+2348781 MS.gene001051:CDS
GTTGGAAGGGTTTCAAATTC+AGG 0.273882 5.4:+2347654 MS.gene001051:CDS
TAGGATCTCATTCTTGTTAG+TGG 0.316308 5.4:-2347417 None:intergenic
ATCCAAACACACCAGGTATA+TGG 0.318288 5.4:+2347547 MS.gene001051:CDS
GGCTTTCAATGGCACTTTCA+TGG 0.332359 5.4:+2348708 MS.gene001051:CDS
GTCCATATACCTGGTGTGTT+TGG 0.341076 5.4:-2347549 None:intergenic
CTCATTGGCACCAGACTGTA+AGG 0.356523 5.4:-2348682 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.4:+2348576 MS.gene001051:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.366938 5.4:-2348832 None:intergenic
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.4:-2348574 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.388704 5.4:-2347286 None:intergenic
GACATTCTATATTTCTGATC+CGG 0.394293 5.4:+2348879 MS.gene001051:CDS
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.4:+2348502 MS.gene001051:CDS
AAAGAATATTGTACTTATTG+AGG 0.409340 5.4:-2348606 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.410004 5.4:-2348697 None:intergenic
TATATTTCTGATCCGGTTGT+TGG 0.413679 5.4:+2348886 MS.gene001051:CDS
GAACCGTTGTCGATTTCCTT+TGG 0.415853 5.4:+2348456 MS.gene001051:CDS
TCCTCTCAACAAGTATAATA+GGG 0.419961 5.4:+2348855 MS.gene001051:CDS
GTCAGATTTGGCATGTTGGA+AGG 0.432988 5.4:+2347640 MS.gene001051:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.4:-2348538 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 5.4:-2348040 None:intergenic
AACGACCGAACAGATGAATA+TGG 0.449164 5.4:+2348421 MS.gene001051:CDS
GACTCTAATCCAAATGCATT+GGG 0.453689 5.4:+2348565 MS.gene001051:CDS
AATGGCACTTTCATGGCTGC+AGG 0.454817 5.4:+2348715 MS.gene001051:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.460762 5.4:+2347299 MS.gene001051:CDS
AAGAATATTGTACTTATTGA+GGG 0.462924 5.4:-2348605 None:intergenic
GGGTTGAGGAACATTGTTGT+AGG 0.466237 5.4:-2347436 None:intergenic
CTTCTCATAGCTGAAGCTAC+TGG 0.479639 5.4:+2347501 MS.gene001051:CDS
ATCCACCATATTCATCTGTT+CGG 0.480368 5.4:-2348426 None:intergenic
TCTTCTTACACCTTACAAGA+TGG 0.486533 5.4:+2347276 MS.gene001051:CDS
CAGTCTGGTGCCAATGAGAA+AGG 0.498444 5.4:+2348687 MS.gene001051:CDS
CTAAAGAGCAAGTTGAGGCT+TGG 0.501276 5.4:+2347571 MS.gene001051:CDS
GAAATCGACAACGGTTCTCA+AGG 0.504808 5.4:-2348450 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.4:+2348564 MS.gene001051:CDS
TAGTCAGTGTAACCAACAAC+CGG 0.513490 5.4:-2348898 None:intergenic
GATTGAAAGCCCTTACAGTC+TGG 0.513661 5.4:+2348672 MS.gene001051:CDS
GAATAATACTTGACAGCAAT+GGG 0.514062 5.4:-2347456 None:intergenic
TCAGATTTGGCATGTTGGAA+GGG 0.515594 5.4:+2347641 MS.gene001051:CDS
GAAGCAGTTGTGAATGAGAT+AGG 0.516901 5.4:+2348487 MS.gene001051:CDS
TTTGATGGAGTTGAAATCCA+TGG 0.517258 5.4:+2348355 MS.gene001051:CDS
TACTTGACAGCAATGGGTTG+AGG 0.519656 5.4:-2347450 None:intergenic
TCATCTGTACTTAGCCGTCT+CGG 0.521373 5.4:-2348112 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.528070 5.4:-2348390 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5.4:+2348169 MS.gene001051:CDS
TGAATAATACTTGACAGCAA+TGG 0.535636 5.4:-2347457 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.535658 5.4:+2348364 MS.gene001051:CDS
TTCTGTCAGATTTGGCATGT+TGG 0.537785 5.4:+2347636 MS.gene001051:CDS
CTTCTTACACCTTACAAGAT+GGG 0.542433 5.4:+2347277 MS.gene001051:CDS
GACTTGTCAGTAGAAGATAT+CGG 0.550201 5.4:-2348055 None:intergenic
GGTGTCTCTCACACTGCTCA+AGG 0.553959 5.4:+2347522 MS.gene001051:CDS
CAATGCTATAGCTGAAAACA+AGG 0.556236 5.4:+2348762 MS.gene001051:CDS
TGCTCTTTAGTCCATATACC+TGG 0.556652 5.4:-2347558 None:intergenic
TCATGAACCGCATCTACGAT+AGG 0.560519 5.4:-2347597 None:intergenic
TATTCACAGAGAACCTCTAA+AGG 0.566712 5.4:+2347474 MS.gene001051:CDS
CCAATGAGAAAGGCTTTCAA+TGG 0.567256 5.4:+2348697 MS.gene001051:CDS
CAATATTCTTTACTGTCACA+TGG 0.576936 5.4:+2348618 MS.gene001051:CDS
AACAATTCACGAAACCGAGA+CGG 0.589361 5.4:+2348098 MS.gene001051:CDS
TCCCTATTATACTTGTTGAG+AGG 0.594177 5.4:-2348856 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.4:-2348372 None:intergenic
TCATTGGCACCAGACTGTAA+GGG 0.602205 5.4:-2348681 None:intergenic
GGAGGCTATGACAGACAAGA+CGG 0.604358 5.4:+2348736 MS.gene001051:CDS
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.4:-2348472 None:intergenic
AAATCGACAACGGTTCTCAA+GGG 0.613592 5.4:-2348449 None:intergenic
GAGGCTATGACAGACAAGAC+GGG 0.616560 5.4:+2348737 MS.gene001051:CDS
CAAGGCTATCCAAACACACC+AGG 0.616594 5.4:+2347540 MS.gene001051:CDS
ATCTTGTAAGGTGTAAGAAG+AGG 0.620167 5.4:-2347274 None:intergenic
GGCACTTTCATGGCTGCAGG+AGG 0.627009 5.4:+2348718 MS.gene001051:CDS
CGAACAGTTTATCAGCCGAA+TGG 0.629394 5.4:+2348025 MS.gene001051:intron
GTAGATGCGGTTCATGACAA+AGG 0.633675 5.4:+2347603 MS.gene001051:CDS
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.4:+2348541 MS.gene001051:CDS
GACCGAACAGATGAATATGG+TGG 0.642811 5.4:+2348424 MS.gene001051:CDS
TTGGAAACCTATCGTAGATG+CGG 0.654892 5.4:+2347590 MS.gene001051:CDS
TCACAGAGAACCTCTAAAGG+TGG 0.662878 5.4:+2347477 MS.gene001051:CDS
ATGGACTAAAGAGCAAGTTG+AGG 0.680552 5.4:+2347566 MS.gene001051:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.4:+2348621 MS.gene001051:CDS
CTTCCAAAGGAAATCGACAA+CGG 0.701023 5.4:-2348459 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.732511 5.4:+2347606 MS.gene001051:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATGAAAATAAAAGT+TGG + chr5.4:2347706-2347725 MS.gene001051:intron 10.0%
!! AAAGAATATTGTACTTATTG+AGG - chr5.4:2348609-2348628 None:intergenic 20.0%
!! AAATAGAATAGAAAGTGAAA+TGG - chr5.4:2347338-2347357 None:intergenic 20.0%
!! AAGAATATTGTACTTATTGA+GGG - chr5.4:2348608-2348627 None:intergenic 20.0%
!! ATAGTAAACTGAATATGATT+TGG + chr5.4:2347879-2347898 MS.gene001051:intron 20.0%
!! TAGTAAACTGAATATGATTT+GGG + chr5.4:2347880-2347899 MS.gene001051:intron 20.0%
!!! ATTGAAGCATTTTTCAATTT+CGG - chr5.4:2348220-2348239 None:intergenic 20.0%
!!! TCAAATATAACATGCTTTTT+AGG + chr5.4:2347823-2347842 MS.gene001051:intron 20.0%
! AGGCATTAATCAAATAACTT+AGG + chr5.4:2347843-2347862 MS.gene001051:intron 25.0%
! ATTCAGTTTACTATCAATGA+TGG - chr5.4:2347873-2347892 None:intergenic 25.0%
! ATTGTTGAGTATTACTATCA+AGG + chr5.4:2347912-2347931 MS.gene001051:intron 25.0%
!! ATTGATGATCTTAACCAATT+TGG - chr5.4:2347764-2347783 None:intergenic 25.0%
!! GTATATTTTTCTGTCAGATT+TGG + chr5.4:2347628-2347647 MS.gene001051:CDS 25.0%
!! TTGATGATCTTAACCAATTT+GGG - chr5.4:2347763-2347782 None:intergenic 25.0%
!!! TTGAAGCATTTTTCAATTTC+GGG - chr5.4:2348219-2348238 None:intergenic 25.0%
AAGCATGTTATATTTGAGCT+AGG - chr5.4:2347820-2347839 None:intergenic 30.0%
ATCTCCTAACATAATCAATG+TGG + chr5.4:2348318-2348337 MS.gene001051:intron 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.4:2348618-2348637 MS.gene001051:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.4:2348393-2348412 None:intergenic 30.0%
GAATAATACTTGACAGCAAT+GGG - chr5.4:2347459-2347478 None:intergenic 30.0%
GGTAATGCTAAAATTATGCT+AGG - chr5.4:2347799-2347818 None:intergenic 30.0%
TAATACTCAACAATAACCTC+CGG - chr5.4:2347906-2347925 None:intergenic 30.0%
TCCTCTCAACAAGTATAATA+GGG + chr5.4:2348855-2348874 MS.gene001051:CDS 30.0%
TGAATAATACTTGACAGCAA+TGG - chr5.4:2347460-2347479 None:intergenic 30.0%
! CATCATTTTCAGAGTTGTTT+TGG + chr5.4:2347392-2347411 MS.gene001051:intron 30.0%
! GACATTCTATATTTCTGATC+CGG + chr5.4:2348879-2348898 MS.gene001051:CDS 30.0%
!! AAAATAAAAGTTGGTGTGAG+CGG + chr5.4:2347715-2347734 MS.gene001051:intron 30.0%
!! ATTTGTTGCTTTAAAGCACA+AGG + chr5.4:2348284-2348303 MS.gene001051:intron 30.0%
!! TCAGAAGCTGATTTTATTCT+TGG - chr5.4:2348649-2348668 None:intergenic 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.4:2348576-2348595 MS.gene001051:CDS 35.0%
AAGGCAGATCTTGTAGTTTA+TGG + chr5.4:2348781-2348800 MS.gene001051:CDS 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.4:2348564-2348583 MS.gene001051:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.4:2348577-2348596 None:intergenic 35.0%
ATCAATGTGGTGCAAATTGA+AGG + chr5.4:2348331-2348350 MS.gene001051:intron 35.0%
ATCCACCATATTCATCTGTT+CGG - chr5.4:2348429-2348448 None:intergenic 35.0%
ATCTTGTAAGGTGTAAGAAG+AGG - chr5.4:2347277-2347296 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.4:2348181-2348200 MS.gene001051:intron 35.0%
CAATGCTATAGCTGAAAACA+AGG + chr5.4:2348762-2348781 MS.gene001051:CDS 35.0%
CTCCTCTCAACAAGTATAAT+AGG + chr5.4:2348854-2348873 MS.gene001051:CDS 35.0%
CTTCTTACACCTTACAAGAT+GGG + chr5.4:2347277-2347296 MS.gene001051:CDS 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.4:2348541-2348560 None:intergenic 35.0%
GACCTCAAAACATTAGAAAG+TGG - chr5.4:2347943-2347962 None:intergenic 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.4:2348565-2348584 MS.gene001051:CDS 35.0%
GACTTGTCAGTAGAAGATAT+CGG - chr5.4:2348058-2348077 None:intergenic 35.0%
GATAAACTGTTCGATTCACA+AGG - chr5.4:2348018-2348037 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG - chr5.4:2348835-2348854 None:intergenic 35.0%
TAGGATCTCATTCTTGTTAG+TGG - chr5.4:2347420-2347439 None:intergenic 35.0%
TATTCACAGAGAACCTCTAA+AGG + chr5.4:2347474-2347493 MS.gene001051:CDS 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.4:2348621-2348640 MS.gene001051:CDS 35.0%
TCTTCTTACACCTTACAAGA+TGG + chr5.4:2347276-2347295 MS.gene001051:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.4:2347289-2347308 None:intergenic 35.0%
TTTGATGGAGTTGAAATCCA+TGG + chr5.4:2348355-2348374 MS.gene001051:CDS 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.4:2348541-2348560 MS.gene001051:CDS 35.0%
! AAACTGAATATGATTTGGGC+CGG + chr5.4:2347884-2347903 MS.gene001051:intron 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.4:2347299-2347318 MS.gene001051:CDS 35.0%
! TATATTTCTGATCCGGTTGT+TGG + chr5.4:2348886-2348905 MS.gene001051:CDS 35.0%
! TCCCTATTATACTTGTTGAG+AGG - chr5.4:2348859-2348878 None:intergenic 35.0%
! TGCACCACATTGATTATGTT+AGG - chr5.4:2348325-2348344 None:intergenic 35.0%
!! AGCCACTTTCTAATGTTTTG+AGG + chr5.4:2347938-2347957 MS.gene001051:intron 35.0%
!! GTGCAAATTGAAGGTTTTGA+TGG + chr5.4:2348340-2348359 MS.gene001051:intron 35.0%
AAATCGACAACGGTTCTCAA+GGG - chr5.4:2348452-2348471 None:intergenic 40.0%
AACAATTCACGAAACCGAGA+CGG + chr5.4:2348098-2348117 MS.gene001051:CDS 40.0%
AACGACCGAACAGATGAATA+TGG + chr5.4:2348421-2348440 MS.gene001051:CDS 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.4:2348475-2348494 None:intergenic 40.0%
ATCCAAACACACCAGGTATA+TGG + chr5.4:2347547-2347566 MS.gene001051:CDS 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.4:2348697-2348716 MS.gene001051:CDS 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.4:2348700-2348719 None:intergenic 40.0%
CTTCCAAAGGAAATCGACAA+CGG - chr5.4:2348462-2348481 None:intergenic 40.0%
GAAGCAGTTGTGAATGAGAT+AGG + chr5.4:2348487-2348506 MS.gene001051:CDS 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.4:2348502-2348521 MS.gene001051:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.4:2348826-2348845 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.4:2348169-2348188 MS.gene001051:CDS 40.0%
GTTGGAAGGGTTTCAAATTC+AGG + chr5.4:2347654-2347673 MS.gene001051:CDS 40.0%
TAGTCAGTGTAACCAACAAC+CGG - chr5.4:2348901-2348920 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5.4:2347490-2347509 None:intergenic 40.0%
TCAGATTTGGCATGTTGGAA+GGG + chr5.4:2347641-2347660 MS.gene001051:CDS 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.4:2347561-2347580 None:intergenic 40.0%
TTCTGTCAGATTTGGCATGT+TGG + chr5.4:2347636-2347655 MS.gene001051:CDS 40.0%
TTGGAAACCTATCGTAGATG+CGG + chr5.4:2347590-2347609 MS.gene001051:CDS 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG + chr5.4:2347566-2347585 MS.gene001051:CDS 40.0%
CCATCTGTGTCAACCCAAAT+TGG + chr5.4:2347747-2347766 MS.gene001051:intron 45.0%
CGAACAGTTTATCAGCCGAA+TGG + chr5.4:2348025-2348044 MS.gene001051:intron 45.0%
CTTCTCATAGCTGAAGCTAC+TGG + chr5.4:2347501-2347520 MS.gene001051:CDS 45.0%
GAAATCGACAACGGTTCTCA+AGG - chr5.4:2348453-2348472 None:intergenic 45.0%
GACCGAACAGATGAATATGG+TGG + chr5.4:2348424-2348443 MS.gene001051:CDS 45.0%
GATTGAAAGCCCTTACAGTC+TGG + chr5.4:2348672-2348691 MS.gene001051:CDS 45.0%
GGCTTTCAATGGCACTTTCA+TGG + chr5.4:2348708-2348727 MS.gene001051:CDS 45.0%
GGGTTGAGGAACATTGTTGT+AGG - chr5.4:2347439-2347458 None:intergenic 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.4:2347603-2347622 MS.gene001051:CDS 45.0%
GTCAGATTTGGCATGTTGGA+AGG + chr5.4:2347640-2347659 MS.gene001051:CDS 45.0%
GTCCATATACCTGGTGTGTT+TGG - chr5.4:2347552-2347571 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.4:2348364-2348383 MS.gene001051:CDS 45.0%
TCATCTGTACTTAGCCGTCT+CGG - chr5.4:2348115-2348134 None:intergenic 45.0%
TCATGAACCGCATCTACGAT+AGG - chr5.4:2347600-2347619 None:intergenic 45.0%
TCATTGGCACCAGACTGTAA+GGG - chr5.4:2348684-2348703 None:intergenic 45.0%
! CTAAAGAGCAAGTTGAGGCT+TGG + chr5.4:2347571-2347590 MS.gene001051:CDS 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr5.4:2348043-2348062 None:intergenic 45.0%
! TCACAGAGAACCTCTAAAGG+TGG + chr5.4:2347477-2347496 MS.gene001051:CDS 45.0%
!! CCAATTTGGGTTGACACAGA+TGG - chr5.4:2347750-2347769 None:intergenic 45.0%
!! GAACCGTTGTCGATTTCCTT+TGG + chr5.4:2348456-2348475 MS.gene001051:CDS 45.0%
!! TAAAAGTTGGTGTGAGCGGA+AGG + chr5.4:2347719-2347738 MS.gene001051:intron 45.0%
!! TACTTGACAGCAATGGGTTG+AGG - chr5.4:2347453-2347472 None:intergenic 45.0%
AATGGCACTTTCATGGCTGC+AGG + chr5.4:2348715-2348734 MS.gene001051:CDS 50.0%
CAAGGCTATCCAAACACACC+AGG + chr5.4:2347540-2347559 MS.gene001051:CDS 50.0%
CTCATTGGCACCAGACTGTA+AGG - chr5.4:2348685-2348704 None:intergenic 50.0%
GAGGCTATGACAGACAAGAC+GGG + chr5.4:2348737-2348756 MS.gene001051:CDS 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.4:2347606-2347625 MS.gene001051:CDS 50.0%
GGAGGCTATGACAGACAAGA+CGG + chr5.4:2348736-2348755 MS.gene001051:CDS 50.0%
! CAGTCTGGTGCCAATGAGAA+AGG + chr5.4:2348687-2348706 MS.gene001051:CDS 50.0%
! CTGAATATGATTTGGGCCGG+AGG + chr5.4:2347887-2347906 MS.gene001051:intron 50.0%
GGTGTCTCTCACACTGCTCA+AGG + chr5.4:2347522-2347541 MS.gene001051:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.4:2348375-2348394 None:intergenic 55.0%
GGCACTTTCATGGCTGCAGG+AGG + chr5.4:2348718-2348737 MS.gene001051:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 2347244 2348936 2347244 ID=MS.gene001051
chr5.4 mRNA 2347244 2348936 2347244 ID=MS.gene001051.t1;Parent=MS.gene001051
chr5.4 exon 2347244 2347320 2347244 ID=MS.gene001051.t1.exon1;Parent=MS.gene001051.t1
chr5.4 CDS 2347244 2347320 2347244 ID=cds.MS.gene001051.t1;Parent=MS.gene001051.t1
chr5.4 exon 2347404 2347675 2347404 ID=MS.gene001051.t1.exon2;Parent=MS.gene001051.t1
chr5.4 CDS 2347404 2347675 2347404 ID=cds.MS.gene001051.t1;Parent=MS.gene001051.t1
chr5.4 exon 2348032 2348190 2348032 ID=MS.gene001051.t1.exon3;Parent=MS.gene001051.t1
chr5.4 CDS 2348032 2348190 2348032 ID=cds.MS.gene001051.t1;Parent=MS.gene001051.t1
chr5.4 exon 2348353 2348936 2348353 ID=MS.gene001051.t1.exon4;Parent=MS.gene001051.t1
chr5.4 CDS 2348353 2348936 2348353 ID=cds.MS.gene001051.t1;Parent=MS.gene001051.t1
Gene Sequence

>MS.gene001051

ATGGAAGCTGCTAACATCACTGATTCAATTCCTCTTCTTACACCTTACAAGATGGGCAAATTCAATCTAGCTCATAGGTGCATACTACATACCATTTCACTTTCTATTCTATTTTATTTCAATGTTTTTCTCTTGCTAAATAATTTCACATCATTTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCCTACAACAATGTTCCTCAACCCATTGCTGTCAAGTATTATTCACAGAGAACCTCTAAAGGTGGTCTTCTCATAGCTGAAGCTACTGGTGTCTCTCACACTGCTCAAGGCTATCCAAACACACCAGGTATATGGACTAAAGAGCAAGTTGAGGCTTGGAAACCTATCGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCAAATTCAGGTATATCATTTTTATTTCATCATATCATTATTTATTATGAAAATAAAAGTTGGTGTGAGCGGAAGGTCTCACCATCTGTGTCAACCCAAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTAGCATTACCTAGCTCAAATATAACATGCTTTTTAGGCATTAATCAAATAACTTAGGTCTACCATCATTGATAGTAAACTGAATATGATTTGGGCCGGAGGTTATTGTTGAGTATTACTATCAAGGTGTAGCCACTTTCTAATGTTTTGAGGTCTACTCACATTTATGCAAATAGAATACTCACTCAATGTATGTTCATGTTTTTTCCTTGTGAATCGAACAGTTTATCAGCCGAATGGACAAGCACCGATATCTTCTACTGACAAGTCACTCACAAGCAATGATGTACAACAATTCACGAAACCGAGACGGCTAAGTACAGATGAAATTTCTCATATTGTCAATGATTTCAGACTTGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACAAACGCCCGAAATTGAAAAATGCTTCAATCATATTCATAGTATACAATATTAATATTTTTAACAAAAATGACTATTTGTTGCTTTAAAGCACAAGGACATTTTTCAAATCTCCTAACATAATCAATGTGGTGCAAATTGAAGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATCAAGTGAACGACCGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGTGAATGAGATAGGAGCAGATAAAGTTGGAATTAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCCCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGCTTCTGAAACGATTGAAAGCCCTTACAGTCTGGTGCCAATGAGAAAGGCTTTCAATGGCACTTTCATGGCTGCAGGAGGCTATGACAGACAAGACGGGATCAATGCTATAGCTGAAAACAAGGCAGATCTTGTAGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCACTTAATGCTCCTCTCAACAAGTATAATAGGGAGACATTCTATATTTCTGATCCGGTTGTTGGTTACACTGACTATCCATTTCTCGAATGA
Protein sequence

>MS.gene001051.t1

MEAANITDSIPLLTPYKMGKFNLAHRVVLAPLTRMRSYNNVPQPIAVKYYSQRTSKGGLLIAEATGVSHTAQGYPNTPGIWTKEQVEAWKPIVDAVHDKGGIFFCQIWHVGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLSTDEISHIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDQVNDRTDEYGGSLENRCRFPLEVVEAVVNEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSASETIESPYSLVPMRKAFNGTFMAAGGYDRQDGINAIAENKADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE