AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001050.t1 MTR_5g006670 94.118 357 21 0 7 363 3 359 0.0 703
MS.gene001050.t1 MTR_5g006710 89.256 363 39 0 1 363 1 363 0.0 679
MS.gene001050.t1 MTR_5g006780 86.792 371 41 3 1 363 1 371 0.0 655
MS.gene001050.t1 MTR_5g006800 84.282 369 52 1 1 363 1 369 0.0 645
MS.gene001050.t1 MTR_5g006750 81.671 371 60 2 1 363 1 371 0.0 628
MS.gene001050.t1 MTR_5g006740 82.645 363 57 1 7 363 3 365 0.0 627
MS.gene001050.t1 MTR_5g008040 79.348 368 70 1 1 362 3 370 0.0 613
MS.gene001050.t1 MTR_5g006740 78.237 363 56 3 7 363 3 348 0.0 579
MS.gene001050.t1 MTR_5g006720 72.800 375 58 3 6 363 5 352 0.0 541
MS.gene001050.t1 MTR_3g115600 69.589 365 107 2 1 363 1 363 0.0 535
MS.gene001050.t1 MTR_4g125470 54.324 370 150 3 12 362 19 388 1.46e-144 415
MS.gene001050.t1 MTR_5g006730 82.759 116 20 0 1 116 1 116 1.34e-65 204
MS.gene001050.t1 MTR_3g096570 80.282 71 14 0 169 239 8 78 1.71e-32 122
MS.gene001050.t1 MTR_3g096562 70.370 81 24 0 159 239 162 242 1.23e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001050.t1 AT1G76690 73.984 369 90 1 1 363 3 371 0.0 578
MS.gene001050.t1 AT1G76680 73.442 369 92 2 1 363 1 369 0.0 577
MS.gene001050.t1 AT1G76680 68.782 394 92 3 1 363 1 394 0.0 563
MS.gene001050.t1 AT1G09400 70.679 324 95 0 18 341 1 324 1.23e-180 504
MS.gene001050.t1 AT1G09400 72.348 264 73 0 78 341 2 265 6.39e-147 416
MS.gene001050.t1 AT2G06050 50.909 385 166 3 1 362 1 385 1.78e-140 404
MS.gene001050.t1 AT2G06050 50.909 385 166 3 1 362 1 385 1.78e-140 404
MS.gene001050.t1 AT2G06050 50.909 385 166 3 1 362 1 385 1.78e-140 404
MS.gene001050.t1 AT1G17990 71.318 258 71 2 5 260 2 258 3.51e-138 394
MS.gene001050.t1 AT1G18020 71.318 258 71 2 5 260 2 258 3.51e-138 394
MS.gene001050.t1 AT1G17990 68.217 258 71 3 5 260 2 250 1.40e-129 372

Find 87 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.203120 5.4:-2342275 None:intergenic
CAATGAATTGGGACTTTATA+TGG 0.204033 5.4:+2342028 MS.gene001050:CDS
AGGGCAGATCTTGTTGTTTA+TGG 0.218911 5.4:+2342233 MS.gene001050:CDS
TCAATGCTATAGCAGAAAAT+AGG 0.227212 5.4:+2342213 MS.gene001050:CDS
CTCCTCTTAACAAGTATAAT+AGG 0.228308 5.4:+2342306 MS.gene001050:CDS
GTTGGAAGAGTTTCTAATTC+AGG 0.270001 5.4:+2341087 MS.gene001050:CDS
CTGAAGTCATTGACAATATC+AGG 0.283543 5.4:-2341597 None:intergenic
TGATCCGGTTGTTGGTTATA+CGG 0.296277 5.4:+2342346 MS.gene001050:CDS
AGATAGGAGCAGAGAGAGTT+GGG 0.321147 5.4:+2341955 MS.gene001050:CDS
AACGGCACTTTCATGGTTGC+AGG 0.326217 5.4:+2342167 MS.gene001050:CDS
TATAAGAAGACCACCTTTAG+AGG 0.341560 5.4:-2340920 None:intergenic
CTCATTGGCACCAGGCTGTA+AGG 0.342562 5.4:-2342134 None:intergenic
ATCCAGACACCCCAGGTATA+TGG 0.350122 5.4:+2340980 MS.gene001050:CDS
CATATAAAGTCCCAATTCAT+TGG 0.355579 5.4:-2342027 None:intergenic
CTCACTAGAATAAGATCTTA+TGG 0.357208 5.4:+2340853 MS.gene001050:CDS
GCATGAACAGCATCTACAAT+AGG 0.357406 5.4:-2341030 None:intergenic
AGACTCCAATCCCAATGAAT+TGG 0.357975 5.4:+2342016 MS.gene001050:CDS
GGCTTTCAACGGCACTTTCA+TGG 0.358796 5.4:+2342160 MS.gene001050:CDS
GTCCATATACCTGGGGTGTC+TGG 0.359717 5.4:-2340982 None:intergenic
TCCCTATTATACTTGTTAAG+AGG 0.369675 5.4:-2342308 None:intergenic
TCATCTGTCCCAAGCCTTCT+CGG 0.370065 5.4:-2341570 None:intergenic
CTTTCTGCATATTGTGCAAA+AGG 0.371976 5.4:-2341990 None:intergenic
GCATTGAGAGCAAATCTCTT+TGG 0.376749 5.4:-2342284 None:intergenic
TTTGATGGTGTTGAAATTCA+TGG 0.380570 5.4:+2341807 MS.gene001050:CDS
TTCTCGCCACCGAGAAGGCT+TGG 0.394985 5.4:+2341561 MS.gene001050:CDS
TACATTTCTGATCCGGTTGT+TGG 0.398433 5.4:+2342338 MS.gene001050:CDS
TTGAATTTGCCCATCTTGTA+AGG 0.401075 5.4:-2340719 None:intergenic
GAGATAGGAGCAGAGAGAGT+TGG 0.402112 5.4:+2341954 MS.gene001050:CDS
TCCTCTTAACAAGTATAATA+GGG 0.406224 5.4:+2342307 MS.gene001050:CDS
AGGACCTTTGAGAGTAATAG+AGG 0.421466 5.4:-2340900 None:intergenic
AACATTCTACATTTCTGATC+CGG 0.427062 5.4:+2342331 MS.gene001050:CDS
CAATGCTATAGCAGAAAATA+GGG 0.432026 5.4:+2342214 MS.gene001050:CDS
CAAATCGACATCGGTTCTCT+AGG 0.437051 5.4:-2341902 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 5.4:-2341498 None:intergenic
GACTCCAATCCCAATGAATT+GGG 0.447639 5.4:+2342017 MS.gene001050:CDS
CCGTTGAAAGCCTTTCTCAT+TGG 0.453741 5.4:-2342149 None:intergenic
TCTCGCCACCGAGAAGGCTT+GGG 0.456272 5.4:+2341562 MS.gene001050:CDS
AAGTCCCAATTCATTGGGAT+TGG 0.463512 5.4:-2342021 None:intergenic
TGTTCTTTAGTCCATATACC+TGG 0.469521 5.4:-2340991 None:intergenic
ATATAAAGTCCCAATTCATT+GGG 0.478824 5.4:-2342026 None:intergenic
GTCGGATACACCAGTAGCTT+CGG 0.479603 5.4:-2340944 None:intergenic
GTTCTTTAGTCCATATACCT+GGG 0.484371 5.4:-2340990 None:intergenic
TCTTCTTACACCTTACAAGA+TGG 0.486533 5.4:+2340709 MS.gene001050:CDS
TAGAGGACAGCATGAGGTTG+AGG 0.488275 5.4:-2340883 None:intergenic
AAGCCTTTCTCATTGGCACC+AGG 0.488795 5.4:-2342142 None:intergenic
TCATTGGCACCAGGCTGTAA+GGG 0.490492 5.4:-2342133 None:intergenic
CAGCCTGGTGCCAATGAGAA+AGG 0.498444 5.4:+2342139 MS.gene001050:CDS
CTTCTTATAGCCGAAGCTAC+TGG 0.505350 5.4:+2340934 MS.gene001050:CDS
GAACCGATGTCGATTTGCAT+TGG 0.506354 5.4:+2341908 MS.gene001050:CDS
CTGTCCTCTATTACTCTCAA+AGG 0.511507 5.4:+2340896 MS.gene001050:CDS
CAATATTCTTTATTGTCACA+TGG 0.513287 5.4:+2342070 MS.gene001050:CDS
TAAGGTGTAAGAAGAGGAAT+GGG 0.514396 5.4:-2340701 None:intergenic
GAAGCTGTTGTGAATGAGAT+AGG 0.516901 5.4:+2341939 MS.gene001050:CDS
ATGCCAAATCTGACAAAAGA+AGG 0.517640 5.4:-2341064 None:intergenic
GGAGGTTATGACAGACAAGA+TGG 0.517730 5.4:+2342188 MS.gene001050:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.4:+2341627 MS.gene001050:CDS
TTCTTTAGTCCATATACCTG+GGG 0.525207 5.4:-2340989 None:intergenic
GACTTGTCTGTAGAAGATAT+CGG 0.525444 5.4:-2341513 None:intergenic
GTAAGGTGTAAGAAGAGGAA+TGG 0.528759 5.4:-2340702 None:intergenic
TACTCTCAAAGGTCCTCTAA+AGG 0.530036 5.4:+2340907 MS.gene001050:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5.4:-2341842 None:intergenic
AAATGAAAGCCCTTACAGCC+TGG 0.535825 5.4:+2342124 MS.gene001050:CDS
CTTCTTACACCTTACAAGAT+GGG 0.542433 5.4:+2340710 MS.gene001050:CDS
TGGATACCCTTGAGCTGTGT+CGG 0.553060 5.4:-2340962 None:intergenic
GTAGATGCTGTTCATGCTAA+AGG 0.560685 5.4:+2341036 MS.gene001050:CDS
AAAATTTCTCGCCACCGAGA+AGG 0.568748 5.4:+2341556 MS.gene001050:CDS
GGTGTATCCGACACAGCTCA+AGG 0.574972 5.4:+2340955 MS.gene001050:CDS
TAGTCCGTATAACCAACAAC+CGG 0.576852 5.4:-2342350 None:intergenic
AAATCGACATCGGTTCTCTA+GGG 0.579801 5.4:-2341901 None:intergenic
AATGACAGAACAGATGAATA+CGG 0.588235 5.4:+2341873 MS.gene001050:CDS
GCAAATTCAATCTCTCTCAC+AGG 0.589325 5.4:+2340732 MS.gene001050:CDS
GTTGAAATTCATGGAGCTCA+TGG 0.595308 5.4:+2341816 MS.gene001050:CDS
CAAGGGTATCCAGACACCCC+AGG 0.595672 5.4:+2340973 MS.gene001050:CDS
TAAGATCTTATTCTAGTGAG+TGG 0.606661 5.4:-2340850 None:intergenic
CCAATGAGAAAGGCTTTCAA+CGG 0.607890 5.4:+2342149 MS.gene001050:CDS
GGCACTTTCATGGTTGCAGG+AGG 0.608579 5.4:+2342170 MS.gene001050:CDS
GAGGTTATGACAGACAAGAT+GGG 0.609791 5.4:+2342189 MS.gene001050:CDS
ATCTTGTAAGGTGTAAGAAG+AGG 0.620167 5.4:-2340707 None:intergenic
CTAAAGAACAAGTTGAGGCG+TGG 0.626475 5.4:+2341004 MS.gene001050:CDS
TATTCTTTATTGTCACATGG+TGG 0.626954 5.4:+2342073 MS.gene001050:CDS
ATGGACTAAAGAACAAGTTG+AGG 0.637344 5.4:+2340999 MS.gene001050:CDS
TCTCAAAGGTCCTCTAAAGG+TGG 0.638482 5.4:+2340910 MS.gene001050:CDS
GAGTAATAGAGGACAGCATG+AGG 0.651668 5.4:-2340889 None:intergenic
CTTCCAATGCAAATCGACAT+CGG 0.652380 5.4:-2341911 None:intergenic
GTGTATCCGACACAGCTCAA+GGG 0.660265 5.4:+2340956 MS.gene001050:CDS
GACAGAACAGATGAATACGG+TGG 0.702185 5.4:+2341876 MS.gene001050:CDS
TCTGTCCCAAGCCTTCTCGG+TGG 0.708391 5.4:-2341567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCTTCAAATTATATA+AGG - chr5.4:2341126-2341145 None:intergenic 10.0%
!! AGAAATACTAAAAAAAATAA+CGG - chr5.4:2341369-2341388 None:intergenic 10.0%
!! ATACAAATAAAATACTAACT+CGG + chr5.4:2341444-2341463 MS.gene001050:intron 15.0%
!!! AATTTGAAGATTATTTTAGT+TGG + chr5.4:2341131-2341150 MS.gene001050:intron 15.0%
!!! ATTGAAATTGAAAGTATAAT+AGG - chr5.4:2340760-2340779 None:intergenic 15.0%
!!! CTAAAAAAAATAACGGATTT+AGG - chr5.4:2341362-2341381 None:intergenic 20.0%
!!! TCAGTATTTGATTTTATTCT+TGG - chr5.4:2342101-2342120 None:intergenic 20.0%
!!! TTTAGTATTTCTACTACTAA+GGG + chr5.4:2341377-2341396 MS.gene001050:intron 20.0%
!!! TTTTAGTATTTCTACTACTA+AGG + chr5.4:2341376-2341395 MS.gene001050:intron 20.0%
! ATATAAAGTCCCAATTCATT+GGG - chr5.4:2342029-2342048 None:intergenic 25.0%
! CAATATTCTTTATTGTCACA+TGG + chr5.4:2342070-2342089 MS.gene001050:CDS 25.0%
! TCCTCTTAACAAGTATAATA+GGG + chr5.4:2342307-2342326 MS.gene001050:CDS 25.0%
!! TTAGTATTTCTACTACTAAG+GGG + chr5.4:2341378-2341397 MS.gene001050:intron 25.0%
!!! AGACTATTTGTTGCTTTAAA+AGG + chr5.4:2341729-2341748 MS.gene001050:intron 25.0%
!!! ATTTAGGTTGTGTATAATCA+CGG - chr5.4:2341346-2341365 None:intergenic 25.0%
!!! TTGAAGATTATTTTAGTTGG+AGG + chr5.4:2341134-2341153 MS.gene001050:intron 25.0%
AACATTCTACATTTCTGATC+CGG + chr5.4:2342331-2342350 MS.gene001050:CDS 30.0%
AATGACAGAACAGATGAATA+CGG + chr5.4:2341873-2341892 MS.gene001050:CDS 30.0%
CAATGAATTGGGACTTTATA+TGG + chr5.4:2342028-2342047 MS.gene001050:CDS 30.0%
CAATGCTATAGCAGAAAATA+GGG + chr5.4:2342214-2342233 MS.gene001050:CDS 30.0%
CATATAAAGTCCCAATTCAT+TGG - chr5.4:2342030-2342049 None:intergenic 30.0%
CTCACTAGAATAAGATCTTA+TGG + chr5.4:2340853-2340872 MS.gene001050:CDS 30.0%
CTCCTCTTAACAAGTATAAT+AGG + chr5.4:2342306-2342325 MS.gene001050:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.4:2341845-2341864 None:intergenic 30.0%
TAAGATCTTATTCTAGTGAG+TGG - chr5.4:2340853-2340872 None:intergenic 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5.4:2342073-2342092 MS.gene001050:CDS 30.0%
TCAATGCTATAGCAGAAAAT+AGG + chr5.4:2342213-2342232 MS.gene001050:CDS 30.0%
TGGAGGTTGTTTATTATTGT+TGG + chr5.4:2341151-2341170 MS.gene001050:intron 30.0%
! TCCCTATTATACTTGTTAAG+AGG - chr5.4:2342311-2342330 None:intergenic 30.0%
!! TGATTGAAGTACTTTTCGTT+TGG - chr5.4:2341680-2341699 None:intergenic 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG + chr5.4:2341807-2341826 MS.gene001050:CDS 30.0%
AAAACCTGTTGGGAATAACA+TGG - chr5.4:2341475-2341494 None:intergenic 35.0%
ATCTTGTAAGGTGTAAGAAG+AGG - chr5.4:2340710-2340729 None:intergenic 35.0%
ATGCCAAATCTGACAAAAGA+AGG - chr5.4:2341067-2341086 None:intergenic 35.0%
CAAAACTGTCCGATCAATAT+TGG - chr5.4:2341295-2341314 None:intergenic 35.0%
CTGAAGTCATTGACAATATC+AGG - chr5.4:2341600-2341619 None:intergenic 35.0%
CTTCTTACACCTTACAAGAT+GGG + chr5.4:2340710-2340729 MS.gene001050:CDS 35.0%
CTTTCTGCATATTGTGCAAA+AGG - chr5.4:2341993-2342012 None:intergenic 35.0%
GACTTGTCTGTAGAAGATAT+CGG - chr5.4:2341516-2341535 None:intergenic 35.0%
GAGGTTAATTAGCAAAGACA+AGG - chr5.4:2340807-2340826 None:intergenic 35.0%
GTTCTTTAGTCCATATACCT+GGG - chr5.4:2340993-2341012 None:intergenic 35.0%
GTTGGAAGAGTTTCTAATTC+AGG + chr5.4:2341087-2341106 MS.gene001050:CDS 35.0%
TAAGGTGTAAGAAGAGGAAT+GGG - chr5.4:2340704-2340723 None:intergenic 35.0%
TATAAGAAGACCACCTTTAG+AGG - chr5.4:2340923-2340942 None:intergenic 35.0%
TCTTCTTACACCTTACAAGA+TGG + chr5.4:2340709-2340728 MS.gene001050:CDS 35.0%
TGTTCTTTAGTCCATATACC+TGG - chr5.4:2340994-2341013 None:intergenic 35.0%
TTCTTTAGTCCATATACCTG+GGG - chr5.4:2340992-2341011 None:intergenic 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.4:2340722-2340741 None:intergenic 35.0%
! AAAACAACTCTGAAAATGGG+AGG - chr5.4:2340826-2340845 None:intergenic 35.0%
! ATGGACTAAAGAACAAGTTG+AGG + chr5.4:2340999-2341018 MS.gene001050:CDS 35.0%
! CTACCTTCTTTTGTCAGATT+TGG + chr5.4:2341061-2341080 MS.gene001050:CDS 35.0%
! GCCAAAACAACTCTGAAAAT+GGG - chr5.4:2340829-2340848 None:intergenic 35.0%
! TCCCATTTTCAGAGTTGTTT+TGG + chr5.4:2340825-2340844 MS.gene001050:intron 35.0%
! TGCCAAAACAACTCTGAAAA+TGG - chr5.4:2340830-2340849 None:intergenic 35.0%
! TTTTGTCAGATTTGGCATGT+TGG + chr5.4:2341069-2341088 MS.gene001050:CDS 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr5.4:2341792-2341811 MS.gene001050:intron 35.0%
!! TTGTTGCTTTAAAAGGCACA+AGG + chr5.4:2341736-2341755 MS.gene001050:intron 35.0%
AAGTCCCAATTCATTGGGAT+TGG - chr5.4:2342024-2342043 None:intergenic 40.0%
AGACTCCAATCCCAATGAAT+TGG + chr5.4:2342016-2342035 MS.gene001050:CDS 40.0%
ATGTCCATGTTATTCCCAAC+AGG + chr5.4:2341468-2341487 MS.gene001050:intron 40.0%
CCAATGAGAAAGGCTTTCAA+CGG + chr5.4:2342149-2342168 MS.gene001050:CDS 40.0%
CCAGTCTGTCCAATATTGAT+CGG + chr5.4:2341283-2341302 MS.gene001050:intron 40.0%
CTCAATGTGATGCAAATTGC+AGG + chr5.4:2341783-2341802 MS.gene001050:intron 40.0%
CTGTCCTCTATTACTCTCAA+AGG + chr5.4:2340896-2340915 MS.gene001050:CDS 40.0%
CTTCCAATGCAAATCGACAT+CGG - chr5.4:2341914-2341933 None:intergenic 40.0%
GAAGCTGTTGTGAATGAGAT+AGG + chr5.4:2341939-2341958 MS.gene001050:CDS 40.0%
GACTCCAATCCCAATGAATT+GGG + chr5.4:2342017-2342036 MS.gene001050:CDS 40.0%
GAGGTTATGACAGACAAGAT+GGG + chr5.4:2342189-2342208 MS.gene001050:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.4:2342278-2342297 None:intergenic 40.0%
GCAAATTCAATCTCTCTCAC+AGG + chr5.4:2340732-2340751 MS.gene001050:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.4:2341627-2341646 MS.gene001050:CDS 40.0%
GCATGAACAGCATCTACAAT+AGG - chr5.4:2341033-2341052 None:intergenic 40.0%
GCATTGAGAGCAAATCTCTT+TGG - chr5.4:2342287-2342306 None:intergenic 40.0%
GTAAGGTGTAAGAAGAGGAA+TGG - chr5.4:2340705-2340724 None:intergenic 40.0%
GTAGATGCTGTTCATGCTAA+AGG + chr5.4:2341036-2341055 MS.gene001050:CDS 40.0%
GTTGAAATTCATGGAGCTCA+TGG + chr5.4:2341816-2341835 MS.gene001050:CDS 40.0%
TACATTTCTGATCCGGTTGT+TGG + chr5.4:2342338-2342357 MS.gene001050:CDS 40.0%
TACTCTCAAAGGTCCTCTAA+AGG + chr5.4:2340907-2340926 MS.gene001050:CDS 40.0%
TAGTCCGTATAACCAACAAC+CGG - chr5.4:2342353-2342372 None:intergenic 40.0%
! AGGACCTTTGAGAGTAATAG+AGG - chr5.4:2340903-2340922 None:intergenic 40.0%
! TGATCCGGTTGTTGGTTATA+CGG + chr5.4:2342346-2342365 MS.gene001050:CDS 40.0%
!! AAATCGACATCGGTTCTCTA+GGG - chr5.4:2341904-2341923 None:intergenic 40.0%
!! AATGGGATCAGCAGTTTTAG+CGG - chr5.4:2340687-2340706 None:intergenic 40.0%
!! AGGGCAGATCTTGTTGTTTA+TGG + chr5.4:2342233-2342252 MS.gene001050:CDS 40.0%
AAAATTTCTCGCCACCGAGA+AGG + chr5.4:2341556-2341575 MS.gene001050:CDS 45.0%
AAATGAAAGCCCTTACAGCC+TGG + chr5.4:2342124-2342143 MS.gene001050:CDS 45.0%
AGATAGGAGCAGAGAGAGTT+GGG + chr5.4:2341955-2341974 MS.gene001050:CDS 45.0%
CATTCGGCTGAAAACCTGTT+GGG - chr5.4:2341485-2341504 None:intergenic 45.0%
CCGATCAATATTGGACAGAC+TGG - chr5.4:2341286-2341305 None:intergenic 45.0%
CCGTTGAAAGCCTTTCTCAT+TGG - chr5.4:2342152-2342171 None:intergenic 45.0%
CTAGACAACCGATCTTGATG+TGG - chr5.4:2341213-2341232 None:intergenic 45.0%
CTTCTTATAGCCGAAGCTAC+TGG + chr5.4:2340934-2340953 MS.gene001050:CDS 45.0%
GACAGAACAGATGAATACGG+TGG + chr5.4:2341876-2341895 MS.gene001050:CDS 45.0%
GAGTAATAGAGGACAGCATG+AGG - chr5.4:2340892-2340911 None:intergenic 45.0%
GCAGTCAACCACATCAAGAT+CGG + chr5.4:2341202-2341221 MS.gene001050:intron 45.0%
GGAGGTTATGACAGACAAGA+TGG + chr5.4:2342188-2342207 MS.gene001050:CDS 45.0%
! CTAAAGAACAAGTTGAGGCG+TGG + chr5.4:2341004-2341023 MS.gene001050:CDS 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr5.4:2341501-2341520 None:intergenic 45.0%
! TCTCAAAGGTCCTCTAAAGG+TGG + chr5.4:2340910-2340929 MS.gene001050:CDS 45.0%
!! CAAATCGACATCGGTTCTCT+AGG - chr5.4:2341905-2341924 None:intergenic 45.0%
!! GAACCGATGTCGATTTGCAT+TGG + chr5.4:2341908-2341927 MS.gene001050:CDS 45.0%
AACGGCACTTTCATGGTTGC+AGG + chr5.4:2342167-2342186 MS.gene001050:CDS 50.0%
AAGCCTTTCTCATTGGCACC+AGG - chr5.4:2342145-2342164 None:intergenic 50.0%
ATCCAGACACCCCAGGTATA+TGG + chr5.4:2340980-2340999 MS.gene001050:CDS 50.0%
CCATTCGGCTGAAAACCTGT+TGG - chr5.4:2341486-2341505 None:intergenic 50.0%
GAGATAGGAGCAGAGAGAGT+TGG + chr5.4:2341954-2341973 MS.gene001050:CDS 50.0%
GGCTTTCAACGGCACTTTCA+TGG + chr5.4:2342160-2342179 MS.gene001050:CDS 50.0%
GTCGGATACACCAGTAGCTT+CGG - chr5.4:2340947-2340966 None:intergenic 50.0%
GTGTATCCGACACAGCTCAA+GGG + chr5.4:2340956-2340975 MS.gene001050:CDS 50.0%
TAGAGGACAGCATGAGGTTG+AGG - chr5.4:2340886-2340905 None:intergenic 50.0%
TCATCTGTCCCAAGCCTTCT+CGG - chr5.4:2341573-2341592 None:intergenic 50.0%
TCATTGGCACCAGGCTGTAA+GGG - chr5.4:2342136-2342155 None:intergenic 50.0%
TGGATACCCTTGAGCTGTGT+CGG - chr5.4:2340965-2340984 None:intergenic 50.0%
! CCAACAGGTTTTCAGCCGAA+TGG + chr5.4:2341483-2341502 MS.gene001050:intron 50.0%
CTCATTGGCACCAGGCTGTA+AGG - chr5.4:2342137-2342156 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5.4:2342170-2342189 MS.gene001050:CDS 55.0%
GGTGTATCCGACACAGCTCA+AGG + chr5.4:2340955-2340974 MS.gene001050:CDS 55.0%
! CAGCCTGGTGCCAATGAGAA+AGG + chr5.4:2342139-2342158 MS.gene001050:CDS 55.0%
! GTCCATATACCTGGGGTGTC+TGG - chr5.4:2340985-2341004 None:intergenic 55.0%
TCTCGCCACCGAGAAGGCTT+GGG + chr5.4:2341562-2341581 MS.gene001050:CDS 60.0%
TCTGTCCCAAGCCTTCTCGG+TGG - chr5.4:2341570-2341589 None:intergenic 60.0%
TTCTCGCCACCGAGAAGGCT+TGG + chr5.4:2341561-2341580 MS.gene001050:CDS 60.0%
!! CAAGGGTATCCAGACACCCC+AGG + chr5.4:2340973-2340992 MS.gene001050:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 2340677 2342388 2340677 ID=MS.gene001050
chr5.4 mRNA 2340677 2342388 2340677 ID=MS.gene001050.t1;Parent=MS.gene001050
chr5.4 exon 2340677 2340753 2340677 ID=MS.gene001050.t1.exon1;Parent=MS.gene001050.t1
chr5.4 CDS 2340677 2340753 2340677 ID=cds.MS.gene001050.t1;Parent=MS.gene001050.t1
chr5.4 exon 2340837 2341108 2340837 ID=MS.gene001050.t1.exon2;Parent=MS.gene001050.t1
chr5.4 CDS 2340837 2341108 2340837 ID=cds.MS.gene001050.t1;Parent=MS.gene001050.t1
chr5.4 exon 2341490 2341648 2341490 ID=MS.gene001050.t1.exon3;Parent=MS.gene001050.t1
chr5.4 CDS 2341490 2341648 2341490 ID=cds.MS.gene001050.t1;Parent=MS.gene001050.t1
chr5.4 exon 2341805 2342388 2341805 ID=MS.gene001050.t1.exon4;Parent=MS.gene001050.t1
chr5.4 CDS 2341805 2342388 2341805 ID=cds.MS.gene001050.t1;Parent=MS.gene001050.t1
Gene Sequence

>MS.gene001050

ATGGAAGCCGCTAAAACTGCTGATCCCATTCCTCTTCTTACACCTTACAAGATGGGCAAATTCAATCTCTCTCACAGGTACCTATTATACTTTCAATTTCAATATTCTATTTCAATATCAATGCTTACCTTGTCTTTGCTAATTAACCTCCCATTTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCTTATGGCAATGTTCCTCAACCTCATGCTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCCGAAGCTACTGGTGTATCCGACACAGCTCAAGGGTATCCAGACACCCCAGGTATATGGACTAAAGAACAAGTTGAGGCGTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGTGCTACCTTCTTTTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCAGGTATGTATTTATTTCCTTATATAATTTGAAGATTATTTTAGTTGGAGGTTGTTTATTATTGTTGGATTTCGATTGTTTGTAGTGTGCGTGCATGCAGTCAACCACATCAAGATCGGTTGTCTAGATTTCAATGCAAATTTTGACTTTTTAAATCTAAATTCTTGAGCTTGAAATCCAGTCTGTCCAATATTGATCGGACAGTTTTGACATGTCTGAATAAATGCAGTCACAACTCCGTGATTATACACAACCTAAATCCGTTATTTTTTTTAGTATTTCTACTACTAAGGGGTGATTGCTTTCTGATTTTTTAAGTAATATATATGCACACATTTATACAAATAAAATACTAACTCGGTATGTCCATGTTATTCCCAACAGGTTTTCAGCCGAATGGACAAGCACCGATATCTTCTACAGACAAGTCACTCACAAGCAATGATTTTGAAAATTTCTCGCCACCGAGAAGGCTTGGGACAGATGAAATTCCTGATATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTGTTGATCTTTACAAATTTATCCAAACGAAAAGTACTTCAATCATAGTACAATACTGATATTTTTTAGAAACAAGACTATTTGTTGCTTTAAAAGGCACAAGGACATTTTGAAAATCAACTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATACGGTGGATCCCTAGAGAACCGATGTCGATTTGCATTGGAAGTTGTTGAAGCTGTTGTGAATGAGATAGGAGCAGAGAGAGTTGGGATTAGACTATCACCTTTTGCACAATATGCAGAAAGTGAAGACTCCAATCCCAATGAATTGGGACTTTATATGGCTAATGCTCTCAATAAATACAATATTCTTTATTGTCACATGGTGGAACCAAGAATAAAATCAAATACTGAAACAAATGAAAGCCCTTACAGCCTGGTGCCAATGAGAAAGGCTTTCAACGGCACTTTCATGGTTGCAGGAGGTTATGACAGACAAGATGGGATCAATGCTATAGCAGAAAATAGGGCAGATCTTGTTGTTTATGGTCGTTTATTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCTCTCAATGCTCCTCTTAACAAGTATAATAGGGAAACATTCTACATTTCTGATCCGGTTGTTGGTTATACGGACTATCCATTTCTTGAATGA
Protein sequence

>MS.gene001050.t1

MEAAKTADPIPLLTPYKMGKFNLSHRVVLAPLTRIRSYGNVPQPHAVLYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGATFFCQIWHVGRVSNSGFQPNGQAPISSTDKSLTSNDFENFSPPRRLGTDEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVVNEIGAERVGIRLSPFAQYAESEDSNPNELGLYMANALNKYNILYCHMVEPRIKSNTETNESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIAENRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE