Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001054.t1 | XP_024639048.1 | 93 | 369 | 26 | 0 | 1 | 369 | 5 | 373 | 4.40E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001054.t1 | Q8GYB8 | 71.5 | 369 | 105 | 0 | 1 | 369 | 3 | 371 | 5.1e-164 | 578.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001054.t1 | G7K3R7 | 94.2 | 363 | 21 | 0 | 7 | 369 | 3 | 365 | 9.2e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001054.t1 | MTR_5g006740 | 94.215 | 363 | 21 | 0 | 7 | 369 | 3 | 365 | 0.0 | 726 |
| MS.gene001054.t1 | MTR_5g006740 | 89.256 | 363 | 22 | 1 | 7 | 369 | 3 | 348 | 0.0 | 677 |
| MS.gene001054.t1 | MTR_5g006780 | 83.288 | 371 | 60 | 1 | 1 | 369 | 1 | 371 | 0.0 | 656 |
| MS.gene001054.t1 | MTR_5g006800 | 82.927 | 369 | 63 | 0 | 1 | 369 | 1 | 369 | 0.0 | 656 |
| MS.gene001054.t1 | MTR_5g006670 | 82.645 | 363 | 57 | 1 | 7 | 369 | 3 | 359 | 0.0 | 640 |
| MS.gene001054.t1 | MTR_5g006750 | 78.976 | 371 | 76 | 1 | 1 | 369 | 1 | 371 | 0.0 | 637 |
| MS.gene001054.t1 | MTR_5g008040 | 78.804 | 368 | 78 | 0 | 1 | 368 | 3 | 370 | 0.0 | 624 |
| MS.gene001054.t1 | MTR_5g006710 | 78.320 | 369 | 74 | 1 | 1 | 369 | 1 | 363 | 0.0 | 621 |
| MS.gene001054.t1 | MTR_5g006720 | 76.533 | 375 | 50 | 2 | 6 | 369 | 5 | 352 | 0.0 | 582 |
| MS.gene001054.t1 | MTR_3g115600 | 65.583 | 369 | 121 | 2 | 1 | 369 | 1 | 363 | 0.0 | 522 |
| MS.gene001054.t1 | MTR_4g125470 | 53.763 | 372 | 155 | 5 | 12 | 368 | 19 | 388 | 5.87e-142 | 409 |
| MS.gene001054.t1 | MTR_5g006730 | 80.342 | 117 | 23 | 0 | 1 | 117 | 1 | 117 | 4.04e-65 | 203 |
| MS.gene001054.t1 | MTR_3g096570 | 69.231 | 78 | 21 | 1 | 175 | 252 | 8 | 82 | 4.65e-29 | 114 |
| MS.gene001054.t1 | MTR_3g096562 | 63.095 | 84 | 28 | 1 | 165 | 248 | 162 | 242 | 1.14e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001054.t1 | AT1G76690 | 71.545 | 369 | 105 | 0 | 1 | 369 | 3 | 371 | 0.0 | 578 |
| MS.gene001054.t1 | AT1G76680 | 70.461 | 369 | 109 | 0 | 1 | 369 | 1 | 369 | 0.0 | 565 |
| MS.gene001054.t1 | AT1G76680 | 65.990 | 394 | 109 | 1 | 1 | 369 | 1 | 394 | 0.0 | 551 |
| MS.gene001054.t1 | AT1G09400 | 65.758 | 330 | 107 | 1 | 18 | 347 | 1 | 324 | 2.40e-174 | 488 |
| MS.gene001054.t1 | AT1G09400 | 66.296 | 270 | 85 | 1 | 78 | 347 | 2 | 265 | 3.18e-141 | 402 |
| MS.gene001054.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene001054.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene001054.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene001054.t1 | AT1G17990 | 66.920 | 263 | 80 | 3 | 5 | 266 | 2 | 258 | 1.72e-133 | 382 |
| MS.gene001054.t1 | AT1G18020 | 66.920 | 263 | 80 | 3 | 5 | 266 | 2 | 258 | 1.72e-133 | 382 |
| MS.gene001054.t1 | AT1G17990 | 63.878 | 263 | 80 | 4 | 5 | 266 | 2 | 250 | 8.98e-125 | 360 |
Find 87 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCTATAACTGAAAAT+AGG | 0.181027 | 5.4:+2359708 | MS.gene001054:CDS |
| TCATCAACAATTTCCATTCT+TGG | 0.190977 | 5.4:-2359593 | None:intergenic |
| CCAAGAATTGGGACTTTATA+TGG | 0.196652 | 5.4:+2359523 | MS.gene001054:CDS |
| TTAAAGTCATTGACAATATT+AGG | 0.218480 | 5.4:-2359034 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.235128 | 5.4:+2359801 | MS.gene001054:CDS |
| GCAAATCTCTTTGGTAAATC+TGG | 0.250222 | 5.4:-2359770 | None:intergenic |
| TACACTTCTGATCCAATTCT+TGG | 0.259451 | 5.4:+2359833 | MS.gene001054:CDS |
| AAATCGTTGTAGATTTGTTT+TGG | 0.271540 | 5.4:+2359403 | MS.gene001054:CDS |
| CTACATTCTTCTGTCAGATT+TGG | 0.278155 | 5.4:+2358057 | MS.gene001054:CDS |
| CCATATAAAGTCCCAATTCT+TGG | 0.281748 | 5.4:-2359523 | None:intergenic |
| AGGGCAGATCTTATTGCTTA+TGG | 0.315216 | 5.4:+2359728 | MS.gene001054:CDS |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5.4:+2359545 | MS.gene001054:CDS |
| GATAAGAAGACCACCTTTAG+AGG | 0.326530 | 5.4:-2357916 | None:intergenic |
| GATATTGGTGCTTGCCCATT+TGG | 0.334904 | 5.4:-2358917 | None:intergenic |
| CATATAAAGTCCCAATTCTT+GGG | 0.338658 | 5.4:-2359522 | None:intergenic |
| ATCCAGACACTCCAGGTATA+TGG | 0.345997 | 5.4:+2357976 | MS.gene001054:CDS |
| AAACTACTCACACCACAAAT+TGG | 0.358876 | 5.4:+2358950 | MS.gene001054:CDS |
| TGGTATTCTTTATTGTCATA+TGG | 0.365038 | 5.4:+2359565 | MS.gene001054:CDS |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366211 | 5.4:-2359779 | None:intergenic |
| AGACTCAAATCCCCAAGAAT+TGG | 0.370867 | 5.4:+2359511 | MS.gene001054:CDS |
| AGTTTGTCTGTTGAAGATAT+TGG | 0.380484 | 5.4:-2358932 | None:intergenic |
| GTCCATATACCTGGAGTGTC+TGG | 0.383043 | 5.4:-2357978 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.383924 | 5.4:-2359803 | None:intergenic |
| CTCATGGATCATTCAAGAAA+AGG | 0.395876 | 5.4:-2359869 | None:intergenic |
| CAATGCTATAACTGAAAATA+GGG | 0.397983 | 5.4:+2359709 | MS.gene001054:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 5.4:-2357694 | None:intergenic |
| TCTTCTGTTCTTAGCCTCCT+TGG | 0.404793 | 5.4:-2359007 | None:intergenic |
| CCATTGAAAACCTTTCTCAT+TGG | 0.416074 | 5.4:-2359644 | None:intergenic |
| TCCTCTTAACAAGTATAATA+GGG | 0.422103 | 5.4:+2359802 | MS.gene001054:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 5.4:+2357707 | MS.gene001054:CDS |
| CATACAGTTTGTCAACCAAA+TGG | 0.430266 | 5.4:+2358902 | MS.gene001054:intron |
| AAAGAATACCATATTTATTG+AGG | 0.434046 | 5.4:-2359553 | None:intergenic |
| GACTCAAATCCCCAAGAATT+GGG | 0.434228 | 5.4:+2359512 | MS.gene001054:CDS |
| ACAGAAGAATGTAGCACCTT+TGG | 0.437106 | 5.4:-2358048 | None:intergenic |
| GTACCATCACCTCCAATTTG+TGG | 0.439210 | 5.4:-2358962 | None:intergenic |
| CTCACTAGAATAAGATCATA+TGG | 0.451776 | 5.4:+2357849 | MS.gene001054:CDS |
| TCTTATTACACCTTACAAGA+TGG | 0.451798 | 5.4:+2357684 | MS.gene001054:CDS |
| TAGTCGGTATAACCAAGAAT+TGG | 0.464873 | 5.4:-2359845 | None:intergenic |
| AACGACAGAACAGATGAATA+TGG | 0.465016 | 5.4:+2359368 | MS.gene001054:CDS |
| TCATGGATCATTCAAGAAAA+GGG | 0.465755 | 5.4:-2359868 | None:intergenic |
| AGGACCTCTGAGAGTAATAG+AGG | 0.468360 | 5.4:-2357896 | None:intergenic |
| TAGAGGATGGCATGAGGTTG+TGG | 0.468564 | 5.4:-2357879 | None:intergenic |
| TAGCTTGGCACCAATGAGAA+AGG | 0.476232 | 5.4:+2359634 | MS.gene001054:CDS |
| TAAGGTGTAATAAGAGGAAT+GGG | 0.482782 | 5.4:-2357676 | None:intergenic |
| GAGATAGGTGCAGAAAGAGT+TGG | 0.488228 | 5.4:+2359449 | MS.gene001054:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.490058 | 5.4:-2359552 | None:intergenic |
| AACTGAATGTCATTATAGCT+TGG | 0.490545 | 5.4:+2359619 | MS.gene001054:CDS |
| GCATGAACAGCATCTACAAT+GGG | 0.496515 | 5.4:-2358026 | None:intergenic |
| TCATATGGTGGAGCCAAGAA+TGG | 0.499035 | 5.4:+2359580 | MS.gene001054:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5.4:+2359302 | MS.gene001054:CDS |
| GTAAGGTGTAATAAGAGGAA+TGG | 0.511089 | 5.4:-2357677 | None:intergenic |
| TTCTGTCAGATTTGGCATGT+TGG | 0.513208 | 5.4:+2358065 | MS.gene001054:CDS |
| GAAGCTATTGCAAATGAGAT+AGG | 0.513935 | 5.4:+2359434 | MS.gene001054:CDS |
| CTTATTACACCTTACAAGAT+GGG | 0.515387 | 5.4:+2357685 | MS.gene001054:CDS |
| CTTCTTATCGCTGAAGCTAC+CGG | 0.516845 | 5.4:+2357930 | MS.gene001054:CDS |
| ATCTTGTAAGGTGTAATAAG+AGG | 0.519989 | 5.4:-2357682 | None:intergenic |
| TCTGTTCTTAGCCTCCTTGG+TGG | 0.522540 | 5.4:-2359004 | None:intergenic |
| ATACAGTTTGTCAACCAAAT+GGG | 0.523723 | 5.4:+2358903 | MS.gene001054:intron |
| CTCCTTGGTGGTGTGAATTG+TGG | 0.527123 | 5.4:-2358992 | None:intergenic |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.4:-2359337 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.531233 | 5.4:-2357987 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5.4:+2359311 | MS.gene001054:CDS |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.4:+2359064 | MS.gene001054:CDS |
| TATTCTTTATTGTCATATGG+TGG | 0.548414 | 5.4:+2359568 | MS.gene001054:CDS |
| TACTCTCAGAGGTCCTCTAA+AGG | 0.549191 | 5.4:+2357903 | MS.gene001054:CDS |
| ACACCACAAATTGGAGGTGA+TGG | 0.561195 | 5.4:+2358959 | MS.gene001054:CDS |
| ATATAAAGTCCCAATTCTTG+GGG | 0.575625 | 5.4:-2359521 | None:intergenic |
| GGAGGCTATGAAAGACAAGA+TGG | 0.576086 | 5.4:+2359683 | MS.gene001054:CDS |
| CTACTCACACCACAAATTGG+AGG | 0.577932 | 5.4:+2358953 | MS.gene001054:CDS |
| CTAAAGAGCAAGTTGAGGCA+TGG | 0.586424 | 5.4:+2358000 | MS.gene001054:CDS |
| GGCATGAACAGCATCTACAA+TGG | 0.589084 | 5.4:-2358027 | None:intergenic |
| CAAGGATATCCAGACACTCC+AGG | 0.591744 | 5.4:+2357969 | MS.gene001054:CDS |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.4:-2359319 | None:intergenic |
| TATGATCTTATTCTAGTGAG+TGG | 0.602551 | 5.4:-2357846 | None:intergenic |
| GGTGTATCTGATACCGCTCA+AGG | 0.616814 | 5.4:+2357951 | MS.gene001054:CDS |
| CCATCCTCTATTACTCTCAG+AGG | 0.623632 | 5.4:+2357892 | MS.gene001054:CDS |
| TCATTCAAGAAAAGGGTAGT+CGG | 0.624730 | 5.4:-2359861 | None:intergenic |
| CCTCTGAGAGTAATAGAGGA+TGG | 0.634193 | 5.4:-2357892 | None:intergenic |
| TCTCAGAGGTCCTCTAAAGG+TGG | 0.653585 | 5.4:+2357906 | MS.gene001054:CDS |
| GTAGATGCTGTTCATGCCAA+AGG | 0.654488 | 5.4:+2358032 | MS.gene001054:CDS |
| GAGTAATAGAGGATGGCATG+AGG | 0.655190 | 5.4:-2357885 | None:intergenic |
| GACAGAACAGATGAATATGG+TGG | 0.658731 | 5.4:+2359371 | MS.gene001054:CDS |
| TTGAGCGGTATCAGATACAC+CGG | 0.663000 | 5.4:-2357949 | None:intergenic |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.679299 | 5.4:+2357995 | MS.gene001054:CDS |
| CACAATTCACACCACCAAGG+AGG | 0.702235 | 5.4:+2358993 | MS.gene001054:CDS |
| TGCCACAATTCACACCACCA+AGG | 0.706911 | 5.4:+2358990 | MS.gene001054:CDS |
| AGTGTCTGGATATCCTTGAG+CGG | 0.714725 | 5.4:-2357964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGCTATTTTTTTTAATA+GGG | + | chr5.4:2358352-2358371 | MS.gene001054:intron | 10.0% |
| !! | AAATGTAATTAATATTGTGT+GGG | - | chr5.4:2358744-2358763 | None:intergenic | 15.0% |
| !! | AAATTGAATCAATTGAATTA+TGG | - | chr5.4:2359114-2359133 | None:intergenic | 15.0% |
| !! | AAGAAAGTAATAAATAGTTA+AGG | - | chr5.4:2358643-2358662 | None:intergenic | 15.0% |
| !!! | AAAATGCTATTTTGTTTAAT+AGG | - | chr5.4:2358178-2358197 | None:intergenic | 15.0% |
| !!! | AAATGCTATTTTGTTTAATA+GGG | - | chr5.4:2358177-2358196 | None:intergenic | 15.0% |
| !!! | AATGCTATTTTTTTTAATAG+GGG | + | chr5.4:2358353-2358372 | MS.gene001054:intron | 15.0% |
| !!! | ATTAAACAAAATAGCATTTT+TGG | + | chr5.4:2358178-2358197 | MS.gene001054:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr5.4:2357735-2357754 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAGTATTACTTTT+AGG | + | chr5.4:2358468-2358487 | MS.gene001054:intron | 15.0% |
| !!! | CTAATGCTATTTTTTTTAAT+AGG | + | chr5.4:2358351-2358370 | MS.gene001054:intron | 15.0% |
| !!! | TCTAGTATGTATTTAATTTT+AGG | + | chr5.4:2358101-2358120 | MS.gene001054:intron | 15.0% |
| !!! | TCTAGTTTAATTACTATAAT+AGG | + | chr5.4:2359241-2359260 | MS.gene001054:intron | 15.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.4:2359556-2359575 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.4:2359555-2359574 | None:intergenic | 20.0% |
| !! | AAGTAACATTAATGTTTCAT+TGG | - | chr5.4:2358608-2358627 | None:intergenic | 20.0% |
| !! | AGAGATAAAAATTGTTACAA+AGG | + | chr5.4:2359161-2359180 | MS.gene001054:intron | 20.0% |
| !! | CTTTCACATATCATTTATTA+AGG | + | chr5.4:2358685-2358704 | MS.gene001054:intron | 20.0% |
| !! | GAAATGTAATTAATATTGTG+TGG | - | chr5.4:2358745-2358764 | None:intergenic | 20.0% |
| !! | TTAAAGTCATTGACAATATT+AGG | - | chr5.4:2359037-2359056 | None:intergenic | 20.0% |
| !! | TTGCTCATTTGATAAAATTA+AGG | - | chr5.4:2358428-2358447 | None:intergenic | 20.0% |
| !!! | AATGCTATTTTGTTTAATAG+GGG | - | chr5.4:2358176-2358195 | None:intergenic | 20.0% |
| !!! | ATGCTATTTTTTTTAATAGG+GGG | + | chr5.4:2358354-2358373 | MS.gene001054:intron | 20.0% |
| !!! | TTATCACCTTTTGAAAAATT+TGG | + | chr5.4:2359479-2359498 | MS.gene001054:CDS | 20.0% |
| ! | CAATGCTATAACTGAAAATA+GGG | + | chr5.4:2359709-2359728 | MS.gene001054:CDS | 25.0% |
| ! | CATATTTCCTTTATGTTAGA+GGG | + | chr5.4:2358293-2358312 | MS.gene001054:intron | 25.0% |
| ! | TATTCTTTATTGTCATATGG+TGG | + | chr5.4:2359568-2359587 | MS.gene001054:CDS | 25.0% |
| ! | TCAATGCTATAACTGAAAAT+AGG | + | chr5.4:2359708-2359727 | MS.gene001054:CDS | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr5.4:2359802-2359821 | MS.gene001054:CDS | 25.0% |
| ! | TGGTATTCTTTATTGTCATA+TGG | + | chr5.4:2359565-2359584 | MS.gene001054:CDS | 25.0% |
| ! | TTTGAAAAATTTGGAGATTG+TGG | + | chr5.4:2359488-2359507 | MS.gene001054:CDS | 25.0% |
| !! | AAATCTACAACGATTTTCAA+GGG | - | chr5.4:2359399-2359418 | None:intergenic | 25.0% |
| !! | AGACATTTTACATACTTGTA+TGG | + | chr5.4:2359265-2359284 | MS.gene001054:intron | 25.0% |
| !!! | AAATCGTTGTAGATTTGTTT+TGG | + | chr5.4:2359403-2359422 | MS.gene001054:CDS | 25.0% |
| !!! | ATGCTATTTTGTTTAATAGG+GGG | - | chr5.4:2358175-2358194 | None:intergenic | 25.0% |
| !!! | CAACTTTTTCTAAAGATAAG+GGG | + | chr5.4:2358261-2358280 | MS.gene001054:intron | 25.0% |
| !!! | CAATCTCCAAATTTTTCAAA+AGG | - | chr5.4:2359488-2359507 | None:intergenic | 25.0% |
| !!! | GCAACTTTTTCTAAAGATAA+GGG | + | chr5.4:2358260-2358279 | MS.gene001054:intron | 25.0% |
| !!! | TGAAAATTGTAGGTTTTGAT+GGG | + | chr5.4:2359288-2359307 | MS.gene001054:intron | 25.0% |
| !!! | TGCAACTTTTTCTAAAGATA+AGG | + | chr5.4:2358259-2358278 | MS.gene001054:intron | 25.0% |
| !!! | TTCAAGTATTACTTTTAGGT+GGG | + | chr5.4:2358472-2358491 | MS.gene001054:intron | 25.0% |
| !!! | TTTCAAGTATTACTTTTAGG+TGG | + | chr5.4:2358471-2358490 | MS.gene001054:intron | 25.0% |
| AAAGTGACAGGTGTATAATT+TGG | - | chr5.4:2358579-2358598 | None:intergenic | 30.0% | |
| AACTGAATGTCATTATAGCT+TGG | + | chr5.4:2359619-2359638 | MS.gene001054:CDS | 30.0% | |
| AAGTGACAGGTGTATAATTT+GGG | - | chr5.4:2358578-2358597 | None:intergenic | 30.0% | |
| ACTTGTATGGTGAAAATTGT+AGG | + | chr5.4:2359278-2359297 | MS.gene001054:intron | 30.0% | |
| AGCATATTTCCCTAAACATA+GGG | + | chr5.4:2358323-2358342 | MS.gene001054:intron | 30.0% | |
| AGTTTGTCTGTTGAAGATAT+TGG | - | chr5.4:2358935-2358954 | None:intergenic | 30.0% | |
| ATACAGTTTGTCAACCAAAT+GGG | + | chr5.4:2358903-2358922 | MS.gene001054:intron | 30.0% | |
| ATATAAAGTCCCAATTCTTG+GGG | - | chr5.4:2359524-2359543 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAATAAG+AGG | - | chr5.4:2357685-2357704 | None:intergenic | 30.0% | |
| CATATAAAGTCCCAATTCTT+GGG | - | chr5.4:2359525-2359544 | None:intergenic | 30.0% | |
| CTCACTAGAATAAGATCATA+TGG | + | chr5.4:2357849-2357868 | MS.gene001054:CDS | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr5.4:2359801-2359820 | MS.gene001054:CDS | 30.0% | |
| CTTATTACACCTTACAAGAT+GGG | + | chr5.4:2357685-2357704 | MS.gene001054:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.4:2359340-2359359 | None:intergenic | 30.0% | |
| GCATATTTCCTTTATGTTAG+AGG | + | chr5.4:2358292-2358311 | MS.gene001054:intron | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | chr5.4:2359545-2359564 | MS.gene001054:CDS | 30.0% | |
| TAAGGTGTAATAAGAGGAAT+GGG | - | chr5.4:2357679-2357698 | None:intergenic | 30.0% | |
| TATGATCTTATTCTAGTGAG+TGG | - | chr5.4:2357849-2357868 | None:intergenic | 30.0% | |
| TCATCAACAATTTCCATTCT+TGG | - | chr5.4:2359596-2359615 | None:intergenic | 30.0% | |
| TCTTATTACACCTTACAAGA+TGG | + | chr5.4:2357684-2357703 | MS.gene001054:CDS | 30.0% | |
| TGACAAACTGTATGGAATAT+AGG | - | chr5.4:2358896-2358915 | None:intergenic | 30.0% | |
| ! | AATGGAACTTTTATGGTTAC+TGG | + | chr5.4:2359662-2359681 | MS.gene001054:CDS | 30.0% |
| ! | CAAATCTACAACGATTTTCA+AGG | - | chr5.4:2359400-2359419 | None:intergenic | 30.0% |
| ! | GGTTTTCAATGGAACTTTTA+TGG | + | chr5.4:2359655-2359674 | MS.gene001054:CDS | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr5.4:2359806-2359825 | None:intergenic | 30.0% |
| !! | GAAAATTGTAGGTTTTGATG+GGG | + | chr5.4:2359289-2359308 | MS.gene001054:intron | 30.0% |
| !! | GTGAAAATTGTAGGTTTTGA+TGG | + | chr5.4:2359287-2359306 | MS.gene001054:intron | 30.0% |
| AAACGTCATACAATTTGGGA+CGG | + | chr5.4:2358786-2358805 | MS.gene001054:intron | 35.0% | |
| AAACTACTCACACCACAAAT+TGG | + | chr5.4:2358950-2358969 | MS.gene001054:CDS | 35.0% | |
| AACGACAGAACAGATGAATA+TGG | + | chr5.4:2359368-2359387 | MS.gene001054:CDS | 35.0% | |
| CATACAGTTTGTCAACCAAA+TGG | + | chr5.4:2358902-2358921 | MS.gene001054:intron | 35.0% | |
| CATATTTCCCTAAACATAGG+GGG | + | chr5.4:2358325-2358344 | MS.gene001054:intron | 35.0% | |
| CATTGGTATTGTAAAGTGAC+AGG | - | chr5.4:2358591-2358610 | None:intergenic | 35.0% | |
| CATTTGGTTGACAAACTGTA+TGG | - | chr5.4:2358904-2358923 | None:intergenic | 35.0% | |
| CCAAGAATTGGGACTTTATA+TGG | + | chr5.4:2359523-2359542 | MS.gene001054:CDS | 35.0% | |
| CCATATAAAGTCCCAATTCT+TGG | - | chr5.4:2359526-2359545 | None:intergenic | 35.0% | |
| CCATTGAAAACCTTTCTCAT+TGG | - | chr5.4:2359647-2359666 | None:intergenic | 35.0% | |
| CCCAAAACGTCATACAATTT+GGG | + | chr5.4:2358782-2358801 | MS.gene001054:intron | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.4:2358057-2358076 | MS.gene001054:CDS | 35.0% | |
| GAAGCTATTGCAAATGAGAT+AGG | + | chr5.4:2359434-2359453 | MS.gene001054:CDS | 35.0% | |
| GAGCATATTTCCCTAAACAT+AGG | + | chr5.4:2358322-2358341 | MS.gene001054:intron | 35.0% | |
| GAGGTTTAATTAGCAAGACA+AGG | - | chr5.4:2357803-2357822 | None:intergenic | 35.0% | |
| GCAAATCTCTTTGGTAAATC+TGG | - | chr5.4:2359773-2359792 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr5.4:2357707-2357726 | MS.gene001054:CDS | 35.0% | |
| GCATATTTCCCTAAACATAG+GGG | + | chr5.4:2358324-2358343 | MS.gene001054:intron | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | chr5.4:2359782-2359801 | None:intergenic | 35.0% | |
| GTAAGGTGTAATAAGAGGAA+TGG | - | chr5.4:2357680-2357699 | None:intergenic | 35.0% | |
| GTCCAAAAATTACTGAGAAG+AGG | + | chr5.4:2358209-2358228 | MS.gene001054:intron | 35.0% | |
| TACACTTCTGATCCAATTCT+TGG | + | chr5.4:2359833-2359852 | MS.gene001054:CDS | 35.0% | |
| TAGTCGGTATAACCAAGAAT+TGG | - | chr5.4:2359848-2359867 | None:intergenic | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | - | chr5.4:2359864-2359883 | None:intergenic | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5.4:2357697-2357716 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr5.4:2357822-2357841 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | + | chr5.4:2358382-2358401 | MS.gene001054:intron | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | - | chr5.4:2358401-2358382 | None:intergenic | 35.0% |
| ! | CCAATGAGAAAGGTTTTCAA+TGG | + | chr5.4:2359644-2359663 | MS.gene001054:CDS | 35.0% |
| ! | CCCAAATTGTATGACGTTTT+GGG | - | chr5.4:2358785-2358804 | None:intergenic | 35.0% |
| ! | CTTTTGACCCTCTAACATAA+AGG | - | chr5.4:2358303-2358322 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr5.4:2357825-2357844 | None:intergenic | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | + | chr5.4:2358149-2358168 | MS.gene001054:intron | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | - | chr5.4:2358168-2358149 | None:intergenic | 35.0% |
| ! | TCCCAAATTGTATGACGTTT+TGG | - | chr5.4:2358786-2358805 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr5.4:2357821-2357840 | MS.gene001054:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | + | chr5.4:2358383-2358402 | MS.gene001054:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | - | chr5.4:2358402-2358383 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr5.4:2357826-2357845 | None:intergenic | 35.0% |
| !! | CTCAGTAATTTTTGGACGAA+GGG | - | chr5.4:2358206-2358225 | None:intergenic | 35.0% |
| !! | TCAGTAATTTTTGGACGAAG+GGG | - | chr5.4:2358205-2358224 | None:intergenic | 35.0% |
| !! | TCTCAGTAATTTTTGGACGA+AGG | - | chr5.4:2358207-2358226 | None:intergenic | 35.0% |
| !!! | TGCAATTATGCCCCTTTTTT+GGG | - | chr5.4:2358243-2358262 | None:intergenic | 35.0% |
| !!! | TTGCAATTATGCCCCTTTTT+TGG | - | chr5.4:2358244-2358263 | None:intergenic | 35.0% |
| AAACTTAGGGGGCAAAAAGT+GGG | + | chr5.4:2358396-2358415 | MS.gene001054:intron | 40.0% | |
| AAACTTAGGGGGCAAAAAGT+GGG | - | chr5.4:2358415-2358396 | None:intergenic | 40.0% | |
| AAGCGACATACAATTTGGGA+AGG | - | chr5.4:2358540-2358559 | None:intergenic | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5.4:2358051-2358070 | None:intergenic | 40.0% | |
| AGACTCAAATCCCCAAGAAT+TGG | + | chr5.4:2359511-2359530 | MS.gene001054:CDS | 40.0% | |
| AGGGCAGATCTTATTGCTTA+TGG | + | chr5.4:2359728-2359747 | MS.gene001054:CDS | 40.0% | |
| ATTAGTGACCCCCTATGTTT+AGG | - | chr5.4:2358336-2358355 | None:intergenic | 40.0% | |
| CCCAAAGCGACATACAATTT+GGG | - | chr5.4:2358544-2358563 | None:intergenic | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.4:2359371-2359390 | MS.gene001054:CDS | 40.0% | |
| GACATACAATTTGGGAAGGA+TGG | - | chr5.4:2358536-2358555 | None:intergenic | 40.0% | |
| GACTCAAATCCCCAAGAATT+GGG | + | chr5.4:2359512-2359531 | MS.gene001054:CDS | 40.0% | |
| GATAAGAAGACCACCTTTAG+AGG | - | chr5.4:2357919-2357938 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.4:2359064-2359083 | MS.gene001054:CDS | 40.0% | |
| GCATGAACAGCATCTACAAT+GGG | - | chr5.4:2358029-2358048 | None:intergenic | 40.0% | |
| GCCCAAAACGTCATACAATT+TGG | + | chr5.4:2358781-2358800 | MS.gene001054:intron | 40.0% | |
| TCCCAAAGCGACATACAATT+TGG | - | chr5.4:2358545-2358564 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.4:2357990-2358009 | None:intergenic | 40.0% | |
| TTAGTGACCCCCTATGTTTA+GGG | - | chr5.4:2358335-2358354 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.4:2358065-2358084 | MS.gene001054:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.4:2359302-2359321 | MS.gene001054:CDS | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr5.4:2357995-2358014 | MS.gene001054:CDS | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | + | chr5.4:2358384-2358403 | MS.gene001054:intron | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | - | chr5.4:2358403-2358384 | None:intergenic | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | + | chr5.4:2358385-2358404 | MS.gene001054:intron | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | - | chr5.4:2358404-2358385 | None:intergenic | 40.0% |
| ! | GGAACTTTTATGGTTACTGG+AGG | + | chr5.4:2359665-2359684 | MS.gene001054:CDS | 40.0% |
| ! | GGCCTCTTCTCAGTAATTTT+TGG | - | chr5.4:2358214-2358233 | None:intergenic | 40.0% |
| ! | TCCCAAATTGTATGTCGCTT+TGG | + | chr5.4:2358540-2358559 | MS.gene001054:intron | 40.0% |
| !! | CAGTAATTTTTGGACGAAGG+GGG | - | chr5.4:2358204-2358223 | None:intergenic | 40.0% |
| !! | CCCAAATTGTATGTCGCTTT+GGG | + | chr5.4:2358541-2358560 | MS.gene001054:intron | 40.0% |
| ACACCACAAATTGGAGGTGA+TGG | + | chr5.4:2358959-2358978 | MS.gene001054:CDS | 45.0% | |
| AGTGTCTGGATATCCTTGAG+CGG | - | chr5.4:2357967-2357986 | None:intergenic | 45.0% | |
| ATCCAGACACTCCAGGTATA+TGG | + | chr5.4:2357976-2357995 | MS.gene001054:CDS | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | + | chr5.4:2358395-2358414 | MS.gene001054:intron | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | - | chr5.4:2358414-2358395 | None:intergenic | 45.0% | |
| CCATCCTCTATTACTCTCAG+AGG | + | chr5.4:2357892-2357911 | MS.gene001054:CDS | 45.0% | |
| CTACTCACACCACAAATTGG+AGG | + | chr5.4:2358953-2358972 | MS.gene001054:CDS | 45.0% | |
| CTTCTTATCGCTGAAGCTAC+CGG | + | chr5.4:2357930-2357949 | MS.gene001054:CDS | 45.0% | |
| GAGATAGGTGCAGAAAGAGT+TGG | + | chr5.4:2359449-2359468 | MS.gene001054:CDS | 45.0% | |
| GAGTAATAGAGGATGGCATG+AGG | - | chr5.4:2357888-2357907 | None:intergenic | 45.0% | |
| GGAGGCTATGAAAGACAAGA+TGG | + | chr5.4:2359683-2359702 | MS.gene001054:CDS | 45.0% | |
| GGCATGAACAGCATCTACAA+TGG | - | chr5.4:2358030-2358049 | None:intergenic | 45.0% | |
| GTACCATCACCTCCAATTTG+TGG | - | chr5.4:2358965-2358984 | None:intergenic | 45.0% | |
| GTAGATGCTGTTCATGCCAA+AGG | + | chr5.4:2358032-2358051 | MS.gene001054:CDS | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.4:2359311-2359330 | MS.gene001054:CDS | 45.0% | |
| TACTCTCAGAGGTCCTCTAA+AGG | + | chr5.4:2357903-2357922 | MS.gene001054:CDS | 45.0% | |
| TAGCTTGGCACCAATGAGAA+AGG | + | chr5.4:2359634-2359653 | MS.gene001054:CDS | 45.0% | |
| TCTTCTGTTCTTAGCCTCCT+TGG | - | chr5.4:2359010-2359029 | None:intergenic | 45.0% | |
| TTGAGCGGTATCAGATACAC+CGG | - | chr5.4:2357952-2357971 | None:intergenic | 45.0% | |
| ! | AGGACCTCTGAGAGTAATAG+AGG | - | chr5.4:2357899-2357918 | None:intergenic | 45.0% |
| ! | CCTCTGAGAGTAATAGAGGA+TGG | - | chr5.4:2357895-2357914 | None:intergenic | 45.0% |
| ! | CTAAAGAGCAAGTTGAGGCA+TGG | + | chr5.4:2358000-2358019 | MS.gene001054:CDS | 45.0% |
| ! | GATATTGGTGCTTGCCCATT+TGG | - | chr5.4:2358920-2358939 | None:intergenic | 45.0% |
| ! | GTCATACAATTTGGGACGGA+GGG | + | chr5.4:2358790-2358809 | MS.gene001054:intron | 45.0% |
| ! | TCATATGGTGGAGCCAAGAA+TGG | + | chr5.4:2359580-2359599 | MS.gene001054:CDS | 45.0% |
| AGGCCACGTGTCCCAAAAAA+GGG | + | chr5.4:2358229-2358248 | MS.gene001054:intron | 50.0% | |
| CAAGGATATCCAGACACTCC+AGG | + | chr5.4:2357969-2357988 | MS.gene001054:CDS | 50.0% | |
| CACAATTCACACCACCAAGG+AGG | + | chr5.4:2358993-2359012 | MS.gene001054:CDS | 50.0% | |
| GGTGTATCTGATACCGCTCA+AGG | + | chr5.4:2357951-2357970 | MS.gene001054:CDS | 50.0% | |
| TAGAGGATGGCATGAGGTTG+TGG | - | chr5.4:2357882-2357901 | None:intergenic | 50.0% | |
| TCTGTTCTTAGCCTCCTTGG+TGG | - | chr5.4:2359007-2359026 | None:intergenic | 50.0% | |
| TGCCACAATTCACACCACCA+AGG | + | chr5.4:2358990-2359009 | MS.gene001054:CDS | 50.0% | |
| ! | CGTCATACAATTTGGGACGG+AGG | + | chr5.4:2358789-2358808 | MS.gene001054:intron | 50.0% |
| ! | GTCCATATACCTGGAGTGTC+TGG | - | chr5.4:2357981-2358000 | None:intergenic | 50.0% |
| ! | TCTCAGAGGTCCTCTAAAGG+TGG | + | chr5.4:2357906-2357925 | MS.gene001054:CDS | 50.0% |
| !! | CTCCTTGGTGGTGTGAATTG+TGG | - | chr5.4:2358995-2359014 | None:intergenic | 50.0% |
| GAGGCCACGTGTCCCAAAAA+AGG | + | chr5.4:2358228-2358247 | MS.gene001054:intron | 55.0% | |
| GGCCACGTGTCCCAAAAAAG+GGG | + | chr5.4:2358230-2358249 | MS.gene001054:intron | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.4:2359322-2359341 | None:intergenic | 55.0% | |
| !!! | TGCCCCTTTTTTGGGACACG+TGG | - | chr5.4:2358235-2358254 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2357652 | 2359883 | 2357652 | ID=MS.gene001054 |
| chr5.4 | mRNA | 2357652 | 2359883 | 2357652 | ID=MS.gene001054.t1;Parent=MS.gene001054 |
| chr5.4 | exon | 2357652 | 2357728 | 2357652 | ID=MS.gene001054.t1.exon1;Parent=MS.gene001054.t1 |
| chr5.4 | CDS | 2357652 | 2357728 | 2357652 | ID=cds.MS.gene001054.t1;Parent=MS.gene001054.t1 |
| chr5.4 | exon | 2357833 | 2358104 | 2357833 | ID=MS.gene001054.t1.exon2;Parent=MS.gene001054.t1 |
| chr5.4 | CDS | 2357833 | 2358104 | 2357833 | ID=cds.MS.gene001054.t1;Parent=MS.gene001054.t1 |
| chr5.4 | exon | 2358909 | 2359085 | 2358909 | ID=MS.gene001054.t1.exon3;Parent=MS.gene001054.t1 |
| chr5.4 | CDS | 2358909 | 2359085 | 2358909 | ID=cds.MS.gene001054.t1;Parent=MS.gene001054.t1 |
| chr5.4 | exon | 2359300 | 2359883 | 2359300 | ID=MS.gene001054.t1.exon4;Parent=MS.gene001054.t1 |
| chr5.4 | CDS | 2359300 | 2359883 | 2359300 | ID=cds.MS.gene001054.t1;Parent=MS.gene001054.t1 |
| Gene Sequence |
| Protein sequence |
