AlfalfaGEDB | MS.gene024835

M. sativa cultivar XinJiangDaYe / MS.gene024835

KEGG: K05894
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00724.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024835.t1	XP_024639048.1	93	369	26	0	1	369	5	373	4.40E-207	730.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024835.t1	Q8GYB8	71.5	369	105	0	1	369	3	371	5.1e-164	578.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024835.t1	G7K3R7	94.2	363	21	0	7	369	3	365	9.2e-207	728.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001050	MS.gene024835	PPI
MS.gene001051	MS.gene024835	PPI
MS.gene001053	MS.gene024835	PPI
MS.gene001054	MS.gene024835	PPI
MS.gene001055	MS.gene024835	PPI
MS.gene001056	MS.gene024835	PPI
MS.gene012217	MS.gene024835	PPI
MS.gene016703	MS.gene024835	PPI
MS.gene019336	MS.gene024835	PPI
MS.gene024831	MS.gene024835	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene024835.t1	MTR_5g006740	94.215	363	21	0	7	369	3	365	726
MS.gene024835.t1	MTR_5g006740	89.256	363	22	1	7	369	3	348	677
MS.gene024835.t1	MTR_5g006780	83.288	371	60	1	1	369	1	371	656
MS.gene024835.t1	MTR_5g006800	82.927	369	63	0	1	369	1	369	656
MS.gene024835.t1	MTR_5g006670	82.645	363	57	1	7	369	3	359	640
MS.gene024835.t1	MTR_5g006750	78.976	371	76	1	1	369	1	371	637
MS.gene024835.t1	MTR_5g008040	78.804	368	78	0	1	368	3	370	624
MS.gene024835.t1	MTR_5g006710	78.320	369	74	1	1	369	1	363	621
MS.gene024835.t1	MTR_5g006720	76.533	375	50	2	6	369	5	352	582
MS.gene024835.t1	MTR_3g115600	65.583	369	121	2	1	369	1	363	522

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024835.t1	AT1G76690	71.545	369	105	0	1	369	3	371	0.0	578
MS.gene024835.t1	AT1G76680	70.461	369	109	0	1	369	1	369	0.0	565
MS.gene024835.t1	AT1G76680	65.990	394	109	1	1	369	1	394	0.0	551
MS.gene024835.t1	AT1G09400	65.758	330	107	1	18	347	1	324	2.40e-174	488
MS.gene024835.t1	AT1G09400	66.296	270	85	1	78	347	2	265	3.18e-141	402
MS.gene024835.t1	AT2G06050	48.705	386	179	4	1	368	1	385	2.07e-135	392
MS.gene024835.t1	AT2G06050	48.705	386	179	4	1	368	1	385	2.07e-135	392
MS.gene024835.t1	AT2G06050	48.705	386	179	4	1	368	1	385	2.07e-135	392
MS.gene024835.t1	AT1G17990	66.920	263	80	3	5	266	2	258	1.72e-133	382
MS.gene024835.t1	AT1G18020	66.920	263	80	3	5	266	2	258	1.72e-133	382

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Find 89 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTCACACCACAAAT+TGG	0.358876	5.1:+1408762	MS.gene024835:CDS
AAAGAATACCATATTTATTG+AGG	0.434046	5.1:-1409365	None:intergenic
AAATCGTTGTAGATTTGTTT+TGG	0.271540	5.1:+1409215	MS.gene024835:CDS
AACGACAGAACAGATGAATA+TGG	0.465016	5.1:+1409180	MS.gene024835:CDS
AACTGAATGTCATTATAGCT+TGG	0.490545	5.1:+1409431	MS.gene024835:CDS
AAGAATACCATATTTATTGA+GGG	0.490058	5.1:-1409364	None:intergenic
ACACCACAAATTGGAGGTGA+TGG	0.561195	5.1:+1408771	MS.gene024835:CDS
ACAGAAGAATGTAGCACCTT+TGG	0.437106	5.1:-1407860	None:intergenic
AGACTCAAATCCCCAAGAAT+TGG	0.370867	5.1:+1409323	MS.gene024835:CDS
AGGACCTCTGAGAGTAATAG+AGG	0.468360	5.1:-1407708	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACAGGTGTATAATT+TGG	-	chr5.1:1408391-1408410	None:intergenic	30.0%
AACTGAATGTCATTATAGCT+TGG	+	chr5.1:1409431-1409450	MS.gene024835:CDS	30.0%
AAGTGACAGGTGTATAATTT+GGG	-	chr5.1:1408390-1408409	None:intergenic	30.0%
ACTTGTATGGTGAAAATTGT+AGG	+	chr5.1:1409090-1409109	MS.gene024835:intron	30.0%
AGCATATTTCCCTAAACATA+GGG	+	chr5.1:1408135-1408154	MS.gene024835:intron	30.0%
AGTTTGTCTGTTGAAGATAT+TGG	-	chr5.1:1408747-1408766	None:intergenic	30.0%
ATACAGTTTGTCAACCAAAT+GGG	+	chr5.1:1408715-1408734	MS.gene024835:intron	30.0%
ATATAAAGTCCCAATTCTTG+GGG	-	chr5.1:1409336-1409355	None:intergenic	30.0%
ATCTTGTAAGGTGTAATAAG+AGG	-	chr5.1:1407497-1407516	None:intergenic	30.0%
CATATAAAGTCCCAATTCTT+GGG	-	chr5.1:1409337-1409356	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	1407464	1409695	1407464	ID=MS.gene024835
chr5.1	mRNA	1407464	1409695	1407464	ID=MS.gene024835.t1;Parent=MS.gene024835
chr5.1	exon	1407464	1407540	1407464	ID=MS.gene024835.t1.exon1;Parent=MS.gene024835.t1
chr5.1	CDS	1407464	1407540	1407464	ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1
chr5.1	exon	1407645	1407916	1407645	ID=MS.gene024835.t1.exon2;Parent=MS.gene024835.t1
chr5.1	CDS	1407645	1407916	1407645	ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1
chr5.1	exon	1408721	1408897	1408721	ID=MS.gene024835.t1.exon3;Parent=MS.gene024835.t1
chr5.1	CDS	1408721	1408897	1408721	ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1
chr5.1	exon	1409112	1409695	1409112	ID=MS.gene024835.t1.exon4;Parent=MS.gene024835.t1
chr5.1	CDS	1409112	1409695	1409112	ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1

Gene Sequence

>MS.gene024835

ATGGAAGCTGCTAAAACTGCTGATCCCATTCCTCTTATTACACCTTACAAGATGGGCAAATTCAATCTCTCTCATAGGTACCTATTATACTTTCAATTTCAATGTTATGTTTATTTCACTTTCAATTCAATTTCAATATCAATGCTTACCTTGTCTTGCTAATTAAACCTCCCATTTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCATATGGCAACGTTCCACAACCTCATGCCATCCTCTATTACTCTCAGAGGTCCTCTAAAGGTGGTCTTCTTATCGCTGAAGCTACCGGTGTATCTGATACCGCTCAAGGATATCCAGACACCCCAGGTATATGGACTAAAGAGCAAGTTGAGGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCTAGTATGTATTTAATTTTAGGCTAAAACCCACTTTTTGCCCCCTAAGTTTGCAAAAGTTGCGATTTTGGCCCCCTATTAAACAAAATAGCATTTTTGGCCCCCTTCGTCCAAAAATTACTGAGAAGAGGCCACGTGTCCCAAAAAAGGGGCATAATTGCAACTTTTTCTAAAGATAAGGGGTCTAAAAAGCATATTTCCTTTATGTTAGAGGGTCAAAAGAGCATATTTCCCTAAACATAGGGGGTCACTAATGCTATTTTTTTTAATAGGGGGCCAAAATCGCAACTTTTGCAAACTTAGGGGGCAAAAAGTGGGTTTTAGCCTTAATTTTATCAAATGAGCAATTAATTGACATATTTTTCTAATTTTTCAAGTATTACTTTTAGGTGGGAAAGAAATTTTTGTTAGAGATGATACTTATTTTATACTCCATCCTTCCCAAATTGTATGTCGCTTTGGGAAAAAAATTGTCCCAAATTATACACCTGTCACTTTACAATACCAATGAAACATTAATGTTACTTTTTCTATTATATCCTTAACTATTTATTACTTTCTTTTCTTTCAATTCTTTCATTTATCTTTCACATATCATTTATTAAGGACAATTTTGTAAAACAACTCATAATTTTTCTTTCCCACACAATATTAATTACATTTCTTAATACGTGTGAAATGCCCAAAACGTCATACAATTTGGGACGGAGGGAGTATTCATTAGTTTAATTAATTACATGTATTGTATATATTTATTAAACACATTTATATACACACTCAATATATTATATGCCTATATTCCATACAGTTTGTCAACCAAATGGGCAAGCACCAATATCTTCAACAGACAAACTACTCACACCACAAATTGGAGGTGATGGTACTGAAATGCCACAATTCACACCACCAAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGACTTTAAACTTGCTGCAAGAAATGCTATTGAAGCTGGTAAATTCATTTATCTTAAATTTCTCCATAATTCAATTGATTCAATTTAAGAACAGAAATAACGACGTAAATTAGAGAGATAAAAATTGTTACAAAGGTATGACATCTGTAACTCTTAACAAAAACAATAAGAGACAAACTTCATATTTTTACTCTCTAGTTTAATTACTATAATAGGAAGACATTTTACATACTTGTATGGTGAAAATTGTAGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGCGAACGACAGAACAGATGAATATGGTGGAACCCTTGAAAATCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTATTGCAAATGAGATAGGTGCAGAAAGAGTTGGAATAAAATTATCACCTTTTGAAAAATTTGGAGATTGTGGAGACTCAAATCCCCAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCATATGGTGGAGCCAAGAATGGAAATTGTTGATGAAAAAACTGAATGTCATTATAGCTTGGCACCAATGAGAAAGGTTTTCAATGGAACTTTTATGGTTACTGGAGGCTATGAAAGACAAGATGGAATCAATGCTATAACTGAAAATAGGGCAGATCTTATTGCTTATGGTCGTTTGTTCATATCAAATCCAGATTTACCAAAGAGATTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAGACATTCTACACTTCTGATCCAATTCTTGGTTATACCGACTACCCTTTTCTTGAATGA

Protein sequence

>MS.gene024835.t1

MEAAKTADPIPLITPYKMGKFNLSHRVVLAPLTRIRSYGNVPQPHAILYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGATFFCQIWHVGRVSNSICQPNGQAPISSTDKLLTPQIGGDGTEMPQFTPPRRLRTEEIPNIVNDFKLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGTLENRCRFVLEIVEAIANEIGAERVGIKLSPFEKFGDCGDSNPQELGLYMVNALNKYGILYCHMVEPRMEIVDEKTECHYSLAPMRKVFNGTFMVTGGYERQDGINAITENRADLIAYGRLFISNPDLPKRFALNAPLNKYNRETFYTSDPILGYTDYPFLE