Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024835.t1 | XP_024639048.1 | 93 | 369 | 26 | 0 | 1 | 369 | 5 | 373 | 4.40E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024835.t1 | Q8GYB8 | 71.5 | 369 | 105 | 0 | 1 | 369 | 3 | 371 | 5.1e-164 | 578.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024835.t1 | G7K3R7 | 94.2 | 363 | 21 | 0 | 7 | 369 | 3 | 365 | 9.2e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024835.t1 | MTR_5g006740 | 94.215 | 363 | 21 | 0 | 7 | 369 | 3 | 365 | 0.0 | 726 |
| MS.gene024835.t1 | MTR_5g006740 | 89.256 | 363 | 22 | 1 | 7 | 369 | 3 | 348 | 0.0 | 677 |
| MS.gene024835.t1 | MTR_5g006780 | 83.288 | 371 | 60 | 1 | 1 | 369 | 1 | 371 | 0.0 | 656 |
| MS.gene024835.t1 | MTR_5g006800 | 82.927 | 369 | 63 | 0 | 1 | 369 | 1 | 369 | 0.0 | 656 |
| MS.gene024835.t1 | MTR_5g006670 | 82.645 | 363 | 57 | 1 | 7 | 369 | 3 | 359 | 0.0 | 640 |
| MS.gene024835.t1 | MTR_5g006750 | 78.976 | 371 | 76 | 1 | 1 | 369 | 1 | 371 | 0.0 | 637 |
| MS.gene024835.t1 | MTR_5g008040 | 78.804 | 368 | 78 | 0 | 1 | 368 | 3 | 370 | 0.0 | 624 |
| MS.gene024835.t1 | MTR_5g006710 | 78.320 | 369 | 74 | 1 | 1 | 369 | 1 | 363 | 0.0 | 621 |
| MS.gene024835.t1 | MTR_5g006720 | 76.533 | 375 | 50 | 2 | 6 | 369 | 5 | 352 | 0.0 | 582 |
| MS.gene024835.t1 | MTR_3g115600 | 65.583 | 369 | 121 | 2 | 1 | 369 | 1 | 363 | 0.0 | 522 |
| MS.gene024835.t1 | MTR_4g125470 | 53.763 | 372 | 155 | 5 | 12 | 368 | 19 | 388 | 5.87e-142 | 409 |
| MS.gene024835.t1 | MTR_5g006730 | 80.342 | 117 | 23 | 0 | 1 | 117 | 1 | 117 | 4.04e-65 | 203 |
| MS.gene024835.t1 | MTR_3g096570 | 69.231 | 78 | 21 | 1 | 175 | 252 | 8 | 82 | 4.65e-29 | 114 |
| MS.gene024835.t1 | MTR_3g096562 | 63.095 | 84 | 28 | 1 | 165 | 248 | 162 | 242 | 1.14e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024835.t1 | AT1G76690 | 71.545 | 369 | 105 | 0 | 1 | 369 | 3 | 371 | 0.0 | 578 |
| MS.gene024835.t1 | AT1G76680 | 70.461 | 369 | 109 | 0 | 1 | 369 | 1 | 369 | 0.0 | 565 |
| MS.gene024835.t1 | AT1G76680 | 65.990 | 394 | 109 | 1 | 1 | 369 | 1 | 394 | 0.0 | 551 |
| MS.gene024835.t1 | AT1G09400 | 65.758 | 330 | 107 | 1 | 18 | 347 | 1 | 324 | 2.40e-174 | 488 |
| MS.gene024835.t1 | AT1G09400 | 66.296 | 270 | 85 | 1 | 78 | 347 | 2 | 265 | 3.18e-141 | 402 |
| MS.gene024835.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene024835.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene024835.t1 | AT2G06050 | 48.705 | 386 | 179 | 4 | 1 | 368 | 1 | 385 | 2.07e-135 | 392 |
| MS.gene024835.t1 | AT1G17990 | 66.920 | 263 | 80 | 3 | 5 | 266 | 2 | 258 | 1.72e-133 | 382 |
| MS.gene024835.t1 | AT1G18020 | 66.920 | 263 | 80 | 3 | 5 | 266 | 2 | 258 | 1.72e-133 | 382 |
| MS.gene024835.t1 | AT1G17990 | 63.878 | 263 | 80 | 4 | 5 | 266 | 2 | 250 | 8.98e-125 | 360 |
Find 89 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCTATAACTGAAAAT+AGG | 0.181027 | 5.1:+1409520 | MS.gene024835:CDS |
| TCATCAACAATTTCCATTCT+TGG | 0.190977 | 5.1:-1409405 | None:intergenic |
| CCAAGAATTGGGACTTTATA+TGG | 0.196652 | 5.1:+1409335 | MS.gene024835:CDS |
| TTAAAGTCATTGACAATATT+AGG | 0.218480 | 5.1:-1408846 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.235128 | 5.1:+1409613 | MS.gene024835:CDS |
| GCAAATCTCTTTGGTAAATC+TGG | 0.250222 | 5.1:-1409582 | None:intergenic |
| TACACTTCTGATCCAATTCT+TGG | 0.259451 | 5.1:+1409645 | MS.gene024835:CDS |
| AAATCGTTGTAGATTTGTTT+TGG | 0.271540 | 5.1:+1409215 | MS.gene024835:CDS |
| CTACATTCTTCTGTCAGATT+TGG | 0.278155 | 5.1:+1407869 | MS.gene024835:CDS |
| CCATATAAAGTCCCAATTCT+TGG | 0.281748 | 5.1:-1409335 | None:intergenic |
| AGGGCAGATCTTATTGCTTA+TGG | 0.315216 | 5.1:+1409540 | MS.gene024835:CDS |
| ATCCAGACACCCCAGGTATA+TGG | 0.320997 | 5.1:+1407788 | MS.gene024835:CDS |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5.1:+1409357 | MS.gene024835:CDS |
| GATAAGAAGACCACCTTTAG+AGG | 0.326530 | 5.1:-1407728 | None:intergenic |
| GATATTGGTGCTTGCCCATT+TGG | 0.334904 | 5.1:-1408729 | None:intergenic |
| CATATAAAGTCCCAATTCTT+GGG | 0.338658 | 5.1:-1409334 | None:intergenic |
| AAACTACTCACACCACAAAT+TGG | 0.358876 | 5.1:+1408762 | MS.gene024835:CDS |
| GTCCATATACCTGGGGTGTC+TGG | 0.359717 | 5.1:-1407790 | None:intergenic |
| TGGTATTCTTTATTGTCATA+TGG | 0.365038 | 5.1:+1409377 | MS.gene024835:CDS |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366211 | 5.1:-1409591 | None:intergenic |
| AGACTCAAATCCCCAAGAAT+TGG | 0.370867 | 5.1:+1409323 | MS.gene024835:CDS |
| AGTTTGTCTGTTGAAGATAT+TGG | 0.380484 | 5.1:-1408744 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.383924 | 5.1:-1409615 | None:intergenic |
| CTCATGGATCATTCAAGAAA+AGG | 0.395876 | 5.1:-1409681 | None:intergenic |
| CAATGCTATAACTGAAAATA+GGG | 0.397983 | 5.1:+1409521 | MS.gene024835:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 5.1:-1407506 | None:intergenic |
| TCTTCTGTTCTTAGCCTCCT+TGG | 0.404793 | 5.1:-1408819 | None:intergenic |
| CCATTGAAAACCTTTCTCAT+TGG | 0.416074 | 5.1:-1409456 | None:intergenic |
| TCCTCTTAACAAGTATAATA+GGG | 0.422103 | 5.1:+1409614 | MS.gene024835:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 5.1:+1407519 | MS.gene024835:CDS |
| CATACAGTTTGTCAACCAAA+TGG | 0.430266 | 5.1:+1408714 | MS.gene024835:intron |
| AAAGAATACCATATTTATTG+AGG | 0.434046 | 5.1:-1409365 | None:intergenic |
| GACTCAAATCCCCAAGAATT+GGG | 0.434228 | 5.1:+1409324 | MS.gene024835:CDS |
| ACAGAAGAATGTAGCACCTT+TGG | 0.437106 | 5.1:-1407860 | None:intergenic |
| GTACCATCACCTCCAATTTG+TGG | 0.439210 | 5.1:-1408774 | None:intergenic |
| CTCACTAGAATAAGATCATA+TGG | 0.451776 | 5.1:+1407661 | MS.gene024835:CDS |
| TCTTATTACACCTTACAAGA+TGG | 0.451798 | 5.1:+1407496 | MS.gene024835:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 5.1:-1407799 | None:intergenic |
| TAGTCGGTATAACCAAGAAT+TGG | 0.464873 | 5.1:-1409657 | None:intergenic |
| AACGACAGAACAGATGAATA+TGG | 0.465016 | 5.1:+1409180 | MS.gene024835:CDS |
| TCATGGATCATTCAAGAAAA+GGG | 0.465755 | 5.1:-1409680 | None:intergenic |
| AGGACCTCTGAGAGTAATAG+AGG | 0.468360 | 5.1:-1407708 | None:intergenic |
| TAGAGGATGGCATGAGGTTG+TGG | 0.468564 | 5.1:-1407691 | None:intergenic |
| TAGCTTGGCACCAATGAGAA+AGG | 0.476232 | 5.1:+1409446 | MS.gene024835:CDS |
| TAAGGTGTAATAAGAGGAAT+GGG | 0.482782 | 5.1:-1407488 | None:intergenic |
| GAGATAGGTGCAGAAAGAGT+TGG | 0.488228 | 5.1:+1409261 | MS.gene024835:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.490058 | 5.1:-1409364 | None:intergenic |
| AACTGAATGTCATTATAGCT+TGG | 0.490545 | 5.1:+1409431 | MS.gene024835:CDS |
| GCATGAACAGCATCTACAAT+GGG | 0.496515 | 5.1:-1407838 | None:intergenic |
| TCATATGGTGGAGCCAAGAA+TGG | 0.499035 | 5.1:+1409392 | MS.gene024835:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5.1:+1409114 | MS.gene024835:CDS |
| GCTCTTTAGTCCATATACCT+GGG | 0.511038 | 5.1:-1407798 | None:intergenic |
| GTAAGGTGTAATAAGAGGAA+TGG | 0.511089 | 5.1:-1407489 | None:intergenic |
| TTCTGTCAGATTTGGCATGT+TGG | 0.513208 | 5.1:+1407877 | MS.gene024835:CDS |
| GAAGCTATTGCAAATGAGAT+AGG | 0.513935 | 5.1:+1409246 | MS.gene024835:CDS |
| CTTATTACACCTTACAAGAT+GGG | 0.515387 | 5.1:+1407497 | MS.gene024835:CDS |
| CTTCTTATCGCTGAAGCTAC+CGG | 0.516845 | 5.1:+1407742 | MS.gene024835:CDS |
| ATCTTGTAAGGTGTAATAAG+AGG | 0.519989 | 5.1:-1407494 | None:intergenic |
| TCTGTTCTTAGCCTCCTTGG+TGG | 0.522540 | 5.1:-1408816 | None:intergenic |
| ATACAGTTTGTCAACCAAAT+GGG | 0.523723 | 5.1:+1408715 | MS.gene024835:intron |
| CTCCTTGGTGGTGTGAATTG+TGG | 0.527123 | 5.1:-1408804 | None:intergenic |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.1:-1409149 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5.1:+1409123 | MS.gene024835:CDS |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.1:+1408876 | MS.gene024835:CDS |
| TATTCTTTATTGTCATATGG+TGG | 0.548414 | 5.1:+1409380 | MS.gene024835:CDS |
| TACTCTCAGAGGTCCTCTAA+AGG | 0.549191 | 5.1:+1407715 | MS.gene024835:CDS |
| CTCTTTAGTCCATATACCTG+GGG | 0.549807 | 5.1:-1407797 | None:intergenic |
| ACACCACAAATTGGAGGTGA+TGG | 0.561195 | 5.1:+1408771 | MS.gene024835:CDS |
| ATATAAAGTCCCAATTCTTG+GGG | 0.575625 | 5.1:-1409333 | None:intergenic |
| GGAGGCTATGAAAGACAAGA+TGG | 0.576086 | 5.1:+1409495 | MS.gene024835:CDS |
| CTACTCACACCACAAATTGG+AGG | 0.577932 | 5.1:+1408765 | MS.gene024835:CDS |
| CTAAAGAGCAAGTTGAGGCA+TGG | 0.586424 | 5.1:+1407812 | MS.gene024835:CDS |
| GGCATGAACAGCATCTACAA+TGG | 0.589084 | 5.1:-1407839 | None:intergenic |
| CAAGGATATCCAGACACCCC+AGG | 0.595672 | 5.1:+1407781 | MS.gene024835:CDS |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.1:-1409131 | None:intergenic |
| TATGATCTTATTCTAGTGAG+TGG | 0.602551 | 5.1:-1407658 | None:intergenic |
| GGTGTATCTGATACCGCTCA+AGG | 0.616814 | 5.1:+1407763 | MS.gene024835:CDS |
| CCATCCTCTATTACTCTCAG+AGG | 0.623632 | 5.1:+1407704 | MS.gene024835:CDS |
| TCATTCAAGAAAAGGGTAGT+CGG | 0.624730 | 5.1:-1409673 | None:intergenic |
| CCTCTGAGAGTAATAGAGGA+TGG | 0.634193 | 5.1:-1407704 | None:intergenic |
| TCTCAGAGGTCCTCTAAAGG+TGG | 0.653585 | 5.1:+1407718 | MS.gene024835:CDS |
| GTAGATGCTGTTCATGCCAA+AGG | 0.654488 | 5.1:+1407844 | MS.gene024835:CDS |
| GAGTAATAGAGGATGGCATG+AGG | 0.655190 | 5.1:-1407697 | None:intergenic |
| GACAGAACAGATGAATATGG+TGG | 0.658731 | 5.1:+1409183 | MS.gene024835:CDS |
| TTGAGCGGTATCAGATACAC+CGG | 0.663000 | 5.1:-1407761 | None:intergenic |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.679299 | 5.1:+1407807 | MS.gene024835:CDS |
| CACAATTCACACCACCAAGG+AGG | 0.702235 | 5.1:+1408805 | MS.gene024835:CDS |
| TGCCACAATTCACACCACCA+AGG | 0.706911 | 5.1:+1408802 | MS.gene024835:CDS |
| GGTGTCTGGATATCCTTGAG+CGG | 0.711074 | 5.1:-1407776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGCTATTTTTTTTAATA+GGG | + | chr5.1:1408164-1408183 | MS.gene024835:intron | 10.0% |
| !! | AAATGTAATTAATATTGTGT+GGG | - | chr5.1:1408556-1408575 | None:intergenic | 15.0% |
| !! | AAATTGAATCAATTGAATTA+TGG | - | chr5.1:1408926-1408945 | None:intergenic | 15.0% |
| !! | AAGAAAGTAATAAATAGTTA+AGG | - | chr5.1:1408455-1408474 | None:intergenic | 15.0% |
| !!! | AAAATGCTATTTTGTTTAAT+AGG | - | chr5.1:1407990-1408009 | None:intergenic | 15.0% |
| !!! | AAATGCTATTTTGTTTAATA+GGG | - | chr5.1:1407989-1408008 | None:intergenic | 15.0% |
| !!! | AATGCTATTTTTTTTAATAG+GGG | + | chr5.1:1408165-1408184 | MS.gene024835:intron | 15.0% |
| !!! | ATTAAACAAAATAGCATTTT+TGG | + | chr5.1:1407990-1408009 | MS.gene024835:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr5.1:1407547-1407566 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAGTATTACTTTT+AGG | + | chr5.1:1408280-1408299 | MS.gene024835:intron | 15.0% |
| !!! | CTAATGCTATTTTTTTTAAT+AGG | + | chr5.1:1408163-1408182 | MS.gene024835:intron | 15.0% |
| !!! | TCTAGTATGTATTTAATTTT+AGG | + | chr5.1:1407913-1407932 | MS.gene024835:intron | 15.0% |
| !!! | TCTAGTTTAATTACTATAAT+AGG | + | chr5.1:1409053-1409072 | MS.gene024835:intron | 15.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.1:1409368-1409387 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.1:1409367-1409386 | None:intergenic | 20.0% |
| !! | AAGTAACATTAATGTTTCAT+TGG | - | chr5.1:1408420-1408439 | None:intergenic | 20.0% |
| !! | AGAGATAAAAATTGTTACAA+AGG | + | chr5.1:1408973-1408992 | MS.gene024835:intron | 20.0% |
| !! | CTTTCACATATCATTTATTA+AGG | + | chr5.1:1408497-1408516 | MS.gene024835:intron | 20.0% |
| !! | GAAATGTAATTAATATTGTG+TGG | - | chr5.1:1408557-1408576 | None:intergenic | 20.0% |
| !! | TTAAAGTCATTGACAATATT+AGG | - | chr5.1:1408849-1408868 | None:intergenic | 20.0% |
| !! | TTGCTCATTTGATAAAATTA+AGG | - | chr5.1:1408240-1408259 | None:intergenic | 20.0% |
| !!! | AATGCTATTTTGTTTAATAG+GGG | - | chr5.1:1407988-1408007 | None:intergenic | 20.0% |
| !!! | ATGCTATTTTTTTTAATAGG+GGG | + | chr5.1:1408166-1408185 | MS.gene024835:intron | 20.0% |
| !!! | TTATCACCTTTTGAAAAATT+TGG | + | chr5.1:1409291-1409310 | MS.gene024835:CDS | 20.0% |
| ! | CAATGCTATAACTGAAAATA+GGG | + | chr5.1:1409521-1409540 | MS.gene024835:CDS | 25.0% |
| ! | CATATTTCCTTTATGTTAGA+GGG | + | chr5.1:1408105-1408124 | MS.gene024835:intron | 25.0% |
| ! | TATTCTTTATTGTCATATGG+TGG | + | chr5.1:1409380-1409399 | MS.gene024835:CDS | 25.0% |
| ! | TCAATGCTATAACTGAAAAT+AGG | + | chr5.1:1409520-1409539 | MS.gene024835:CDS | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr5.1:1409614-1409633 | MS.gene024835:CDS | 25.0% |
| ! | TGGTATTCTTTATTGTCATA+TGG | + | chr5.1:1409377-1409396 | MS.gene024835:CDS | 25.0% |
| ! | TTTGAAAAATTTGGAGATTG+TGG | + | chr5.1:1409300-1409319 | MS.gene024835:CDS | 25.0% |
| !! | AAATCTACAACGATTTTCAA+GGG | - | chr5.1:1409211-1409230 | None:intergenic | 25.0% |
| !! | AGACATTTTACATACTTGTA+TGG | + | chr5.1:1409077-1409096 | MS.gene024835:intron | 25.0% |
| !!! | AAATCGTTGTAGATTTGTTT+TGG | + | chr5.1:1409215-1409234 | MS.gene024835:CDS | 25.0% |
| !!! | ATGCTATTTTGTTTAATAGG+GGG | - | chr5.1:1407987-1408006 | None:intergenic | 25.0% |
| !!! | CAACTTTTTCTAAAGATAAG+GGG | + | chr5.1:1408073-1408092 | MS.gene024835:intron | 25.0% |
| !!! | CAATCTCCAAATTTTTCAAA+AGG | - | chr5.1:1409300-1409319 | None:intergenic | 25.0% |
| !!! | GCAACTTTTTCTAAAGATAA+GGG | + | chr5.1:1408072-1408091 | MS.gene024835:intron | 25.0% |
| !!! | TGAAAATTGTAGGTTTTGAT+GGG | + | chr5.1:1409100-1409119 | MS.gene024835:intron | 25.0% |
| !!! | TGCAACTTTTTCTAAAGATA+AGG | + | chr5.1:1408071-1408090 | MS.gene024835:intron | 25.0% |
| !!! | TTCAAGTATTACTTTTAGGT+GGG | + | chr5.1:1408284-1408303 | MS.gene024835:intron | 25.0% |
| !!! | TTTCAAGTATTACTTTTAGG+TGG | + | chr5.1:1408283-1408302 | MS.gene024835:intron | 25.0% |
| AAAGTGACAGGTGTATAATT+TGG | - | chr5.1:1408391-1408410 | None:intergenic | 30.0% | |
| AACTGAATGTCATTATAGCT+TGG | + | chr5.1:1409431-1409450 | MS.gene024835:CDS | 30.0% | |
| AAGTGACAGGTGTATAATTT+GGG | - | chr5.1:1408390-1408409 | None:intergenic | 30.0% | |
| ACTTGTATGGTGAAAATTGT+AGG | + | chr5.1:1409090-1409109 | MS.gene024835:intron | 30.0% | |
| AGCATATTTCCCTAAACATA+GGG | + | chr5.1:1408135-1408154 | MS.gene024835:intron | 30.0% | |
| AGTTTGTCTGTTGAAGATAT+TGG | - | chr5.1:1408747-1408766 | None:intergenic | 30.0% | |
| ATACAGTTTGTCAACCAAAT+GGG | + | chr5.1:1408715-1408734 | MS.gene024835:intron | 30.0% | |
| ATATAAAGTCCCAATTCTTG+GGG | - | chr5.1:1409336-1409355 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAATAAG+AGG | - | chr5.1:1407497-1407516 | None:intergenic | 30.0% | |
| CATATAAAGTCCCAATTCTT+GGG | - | chr5.1:1409337-1409356 | None:intergenic | 30.0% | |
| CTCACTAGAATAAGATCATA+TGG | + | chr5.1:1407661-1407680 | MS.gene024835:CDS | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr5.1:1409613-1409632 | MS.gene024835:CDS | 30.0% | |
| CTTATTACACCTTACAAGAT+GGG | + | chr5.1:1407497-1407516 | MS.gene024835:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.1:1409152-1409171 | None:intergenic | 30.0% | |
| GCATATTTCCTTTATGTTAG+AGG | + | chr5.1:1408104-1408123 | MS.gene024835:intron | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | chr5.1:1409357-1409376 | MS.gene024835:CDS | 30.0% | |
| TAAGGTGTAATAAGAGGAAT+GGG | - | chr5.1:1407491-1407510 | None:intergenic | 30.0% | |
| TATGATCTTATTCTAGTGAG+TGG | - | chr5.1:1407661-1407680 | None:intergenic | 30.0% | |
| TCATCAACAATTTCCATTCT+TGG | - | chr5.1:1409408-1409427 | None:intergenic | 30.0% | |
| TCTTATTACACCTTACAAGA+TGG | + | chr5.1:1407496-1407515 | MS.gene024835:CDS | 30.0% | |
| TGACAAACTGTATGGAATAT+AGG | - | chr5.1:1408708-1408727 | None:intergenic | 30.0% | |
| ! | AATGGAACTTTTATGGTTAC+TGG | + | chr5.1:1409474-1409493 | MS.gene024835:CDS | 30.0% |
| ! | CAAATCTACAACGATTTTCA+AGG | - | chr5.1:1409212-1409231 | None:intergenic | 30.0% |
| ! | GGTTTTCAATGGAACTTTTA+TGG | + | chr5.1:1409467-1409486 | MS.gene024835:CDS | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr5.1:1409618-1409637 | None:intergenic | 30.0% |
| !! | GAAAATTGTAGGTTTTGATG+GGG | + | chr5.1:1409101-1409120 | MS.gene024835:intron | 30.0% |
| !! | GTGAAAATTGTAGGTTTTGA+TGG | + | chr5.1:1409099-1409118 | MS.gene024835:intron | 30.0% |
| AAACGTCATACAATTTGGGA+CGG | + | chr5.1:1408598-1408617 | MS.gene024835:intron | 35.0% | |
| AAACTACTCACACCACAAAT+TGG | + | chr5.1:1408762-1408781 | MS.gene024835:CDS | 35.0% | |
| AACGACAGAACAGATGAATA+TGG | + | chr5.1:1409180-1409199 | MS.gene024835:CDS | 35.0% | |
| CATACAGTTTGTCAACCAAA+TGG | + | chr5.1:1408714-1408733 | MS.gene024835:intron | 35.0% | |
| CATATTTCCCTAAACATAGG+GGG | + | chr5.1:1408137-1408156 | MS.gene024835:intron | 35.0% | |
| CATTGGTATTGTAAAGTGAC+AGG | - | chr5.1:1408403-1408422 | None:intergenic | 35.0% | |
| CATTTGGTTGACAAACTGTA+TGG | - | chr5.1:1408716-1408735 | None:intergenic | 35.0% | |
| CCAAGAATTGGGACTTTATA+TGG | + | chr5.1:1409335-1409354 | MS.gene024835:CDS | 35.0% | |
| CCATATAAAGTCCCAATTCT+TGG | - | chr5.1:1409338-1409357 | None:intergenic | 35.0% | |
| CCATTGAAAACCTTTCTCAT+TGG | - | chr5.1:1409459-1409478 | None:intergenic | 35.0% | |
| CCCAAAACGTCATACAATTT+GGG | + | chr5.1:1408594-1408613 | MS.gene024835:intron | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.1:1407869-1407888 | MS.gene024835:CDS | 35.0% | |
| GAAGCTATTGCAAATGAGAT+AGG | + | chr5.1:1409246-1409265 | MS.gene024835:CDS | 35.0% | |
| GAGCATATTTCCCTAAACAT+AGG | + | chr5.1:1408134-1408153 | MS.gene024835:intron | 35.0% | |
| GAGGTTTAATTAGCAAGACA+AGG | - | chr5.1:1407615-1407634 | None:intergenic | 35.0% | |
| GCAAATCTCTTTGGTAAATC+TGG | - | chr5.1:1409585-1409604 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr5.1:1407519-1407538 | MS.gene024835:CDS | 35.0% | |
| GCATATTTCCCTAAACATAG+GGG | + | chr5.1:1408136-1408155 | MS.gene024835:intron | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | chr5.1:1409594-1409613 | None:intergenic | 35.0% | |
| GTAAGGTGTAATAAGAGGAA+TGG | - | chr5.1:1407492-1407511 | None:intergenic | 35.0% | |
| GTCCAAAAATTACTGAGAAG+AGG | + | chr5.1:1408021-1408040 | MS.gene024835:intron | 35.0% | |
| TACACTTCTGATCCAATTCT+TGG | + | chr5.1:1409645-1409664 | MS.gene024835:CDS | 35.0% | |
| TAGTCGGTATAACCAAGAAT+TGG | - | chr5.1:1409660-1409679 | None:intergenic | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | - | chr5.1:1409676-1409695 | None:intergenic | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5.1:1407509-1407528 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr5.1:1407634-1407653 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | + | chr5.1:1408194-1408213 | MS.gene024835:intron | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | - | chr5.1:1408213-1408194 | None:intergenic | 35.0% |
| ! | CCAATGAGAAAGGTTTTCAA+TGG | + | chr5.1:1409456-1409475 | MS.gene024835:CDS | 35.0% |
| ! | CCCAAATTGTATGACGTTTT+GGG | - | chr5.1:1408597-1408616 | None:intergenic | 35.0% |
| ! | CTTTTGACCCTCTAACATAA+AGG | - | chr5.1:1408115-1408134 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr5.1:1407637-1407656 | None:intergenic | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | + | chr5.1:1407961-1407980 | MS.gene024835:intron | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | - | chr5.1:1407980-1407961 | None:intergenic | 35.0% |
| ! | TCCCAAATTGTATGACGTTT+TGG | - | chr5.1:1408598-1408617 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr5.1:1407633-1407652 | MS.gene024835:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | + | chr5.1:1408195-1408214 | MS.gene024835:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | - | chr5.1:1408214-1408195 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr5.1:1407638-1407657 | None:intergenic | 35.0% |
| !! | CTCAGTAATTTTTGGACGAA+GGG | - | chr5.1:1408018-1408037 | None:intergenic | 35.0% |
| !! | TCAGTAATTTTTGGACGAAG+GGG | - | chr5.1:1408017-1408036 | None:intergenic | 35.0% |
| !! | TCTCAGTAATTTTTGGACGA+AGG | - | chr5.1:1408019-1408038 | None:intergenic | 35.0% |
| !!! | TGCAATTATGCCCCTTTTTT+GGG | - | chr5.1:1408055-1408074 | None:intergenic | 35.0% |
| !!! | TTGCAATTATGCCCCTTTTT+TGG | - | chr5.1:1408056-1408075 | None:intergenic | 35.0% |
| AAACTTAGGGGGCAAAAAGT+GGG | + | chr5.1:1408208-1408227 | MS.gene024835:intron | 40.0% | |
| AAACTTAGGGGGCAAAAAGT+GGG | - | chr5.1:1408227-1408208 | None:intergenic | 40.0% | |
| AAGCGACATACAATTTGGGA+AGG | - | chr5.1:1408352-1408371 | None:intergenic | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5.1:1407863-1407882 | None:intergenic | 40.0% | |
| AGACTCAAATCCCCAAGAAT+TGG | + | chr5.1:1409323-1409342 | MS.gene024835:CDS | 40.0% | |
| AGGGCAGATCTTATTGCTTA+TGG | + | chr5.1:1409540-1409559 | MS.gene024835:CDS | 40.0% | |
| ATTAGTGACCCCCTATGTTT+AGG | - | chr5.1:1408148-1408167 | None:intergenic | 40.0% | |
| CCCAAAGCGACATACAATTT+GGG | - | chr5.1:1408356-1408375 | None:intergenic | 40.0% | |
| CTCTTTAGTCCATATACCTG+GGG | - | chr5.1:1407800-1407819 | None:intergenic | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.1:1409183-1409202 | MS.gene024835:CDS | 40.0% | |
| GACATACAATTTGGGAAGGA+TGG | - | chr5.1:1408348-1408367 | None:intergenic | 40.0% | |
| GACTCAAATCCCCAAGAATT+GGG | + | chr5.1:1409324-1409343 | MS.gene024835:CDS | 40.0% | |
| GATAAGAAGACCACCTTTAG+AGG | - | chr5.1:1407731-1407750 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.1:1408876-1408895 | MS.gene024835:CDS | 40.0% | |
| GCATGAACAGCATCTACAAT+GGG | - | chr5.1:1407841-1407860 | None:intergenic | 40.0% | |
| GCCCAAAACGTCATACAATT+TGG | + | chr5.1:1408593-1408612 | MS.gene024835:intron | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | chr5.1:1407801-1407820 | None:intergenic | 40.0% | |
| TCCCAAAGCGACATACAATT+TGG | - | chr5.1:1408357-1408376 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.1:1407802-1407821 | None:intergenic | 40.0% | |
| TTAGTGACCCCCTATGTTTA+GGG | - | chr5.1:1408147-1408166 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.1:1407877-1407896 | MS.gene024835:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.1:1409114-1409133 | MS.gene024835:CDS | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr5.1:1407807-1407826 | MS.gene024835:CDS | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | + | chr5.1:1408196-1408215 | MS.gene024835:intron | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | - | chr5.1:1408215-1408196 | None:intergenic | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | + | chr5.1:1408197-1408216 | MS.gene024835:intron | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | - | chr5.1:1408216-1408197 | None:intergenic | 40.0% |
| ! | GGAACTTTTATGGTTACTGG+AGG | + | chr5.1:1409477-1409496 | MS.gene024835:CDS | 40.0% |
| ! | GGCCTCTTCTCAGTAATTTT+TGG | - | chr5.1:1408026-1408045 | None:intergenic | 40.0% |
| ! | TCCCAAATTGTATGTCGCTT+TGG | + | chr5.1:1408352-1408371 | MS.gene024835:intron | 40.0% |
| !! | CAGTAATTTTTGGACGAAGG+GGG | - | chr5.1:1408016-1408035 | None:intergenic | 40.0% |
| !! | CCCAAATTGTATGTCGCTTT+GGG | + | chr5.1:1408353-1408372 | MS.gene024835:intron | 40.0% |
| ACACCACAAATTGGAGGTGA+TGG | + | chr5.1:1408771-1408790 | MS.gene024835:CDS | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | + | chr5.1:1408207-1408226 | MS.gene024835:intron | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | - | chr5.1:1408226-1408207 | None:intergenic | 45.0% | |
| CCATCCTCTATTACTCTCAG+AGG | + | chr5.1:1407704-1407723 | MS.gene024835:CDS | 45.0% | |
| CTACTCACACCACAAATTGG+AGG | + | chr5.1:1408765-1408784 | MS.gene024835:CDS | 45.0% | |
| CTTCTTATCGCTGAAGCTAC+CGG | + | chr5.1:1407742-1407761 | MS.gene024835:CDS | 45.0% | |
| GAGATAGGTGCAGAAAGAGT+TGG | + | chr5.1:1409261-1409280 | MS.gene024835:CDS | 45.0% | |
| GAGTAATAGAGGATGGCATG+AGG | - | chr5.1:1407700-1407719 | None:intergenic | 45.0% | |
| GGAGGCTATGAAAGACAAGA+TGG | + | chr5.1:1409495-1409514 | MS.gene024835:CDS | 45.0% | |
| GGCATGAACAGCATCTACAA+TGG | - | chr5.1:1407842-1407861 | None:intergenic | 45.0% | |
| GTACCATCACCTCCAATTTG+TGG | - | chr5.1:1408777-1408796 | None:intergenic | 45.0% | |
| GTAGATGCTGTTCATGCCAA+AGG | + | chr5.1:1407844-1407863 | MS.gene024835:CDS | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.1:1409123-1409142 | MS.gene024835:CDS | 45.0% | |
| TACTCTCAGAGGTCCTCTAA+AGG | + | chr5.1:1407715-1407734 | MS.gene024835:CDS | 45.0% | |
| TAGCTTGGCACCAATGAGAA+AGG | + | chr5.1:1409446-1409465 | MS.gene024835:CDS | 45.0% | |
| TCTTCTGTTCTTAGCCTCCT+TGG | - | chr5.1:1408822-1408841 | None:intergenic | 45.0% | |
| TTGAGCGGTATCAGATACAC+CGG | - | chr5.1:1407764-1407783 | None:intergenic | 45.0% | |
| ! | AGGACCTCTGAGAGTAATAG+AGG | - | chr5.1:1407711-1407730 | None:intergenic | 45.0% |
| ! | CCTCTGAGAGTAATAGAGGA+TGG | - | chr5.1:1407707-1407726 | None:intergenic | 45.0% |
| ! | CTAAAGAGCAAGTTGAGGCA+TGG | + | chr5.1:1407812-1407831 | MS.gene024835:CDS | 45.0% |
| ! | GATATTGGTGCTTGCCCATT+TGG | - | chr5.1:1408732-1408751 | None:intergenic | 45.0% |
| ! | GTCATACAATTTGGGACGGA+GGG | + | chr5.1:1408602-1408621 | MS.gene024835:intron | 45.0% |
| ! | TCATATGGTGGAGCCAAGAA+TGG | + | chr5.1:1409392-1409411 | MS.gene024835:CDS | 45.0% |
| AGGCCACGTGTCCCAAAAAA+GGG | + | chr5.1:1408041-1408060 | MS.gene024835:intron | 50.0% | |
| ATCCAGACACCCCAGGTATA+TGG | + | chr5.1:1407788-1407807 | MS.gene024835:CDS | 50.0% | |
| CACAATTCACACCACCAAGG+AGG | + | chr5.1:1408805-1408824 | MS.gene024835:CDS | 50.0% | |
| GGTGTATCTGATACCGCTCA+AGG | + | chr5.1:1407763-1407782 | MS.gene024835:CDS | 50.0% | |
| GGTGTCTGGATATCCTTGAG+CGG | - | chr5.1:1407779-1407798 | None:intergenic | 50.0% | |
| TAGAGGATGGCATGAGGTTG+TGG | - | chr5.1:1407694-1407713 | None:intergenic | 50.0% | |
| TCTGTTCTTAGCCTCCTTGG+TGG | - | chr5.1:1408819-1408838 | None:intergenic | 50.0% | |
| TGCCACAATTCACACCACCA+AGG | + | chr5.1:1408802-1408821 | MS.gene024835:CDS | 50.0% | |
| ! | CGTCATACAATTTGGGACGG+AGG | + | chr5.1:1408601-1408620 | MS.gene024835:intron | 50.0% |
| ! | TCTCAGAGGTCCTCTAAAGG+TGG | + | chr5.1:1407718-1407737 | MS.gene024835:CDS | 50.0% |
| !! | CTCCTTGGTGGTGTGAATTG+TGG | - | chr5.1:1408807-1408826 | None:intergenic | 50.0% |
| CAAGGATATCCAGACACCCC+AGG | + | chr5.1:1407781-1407800 | MS.gene024835:CDS | 55.0% | |
| GAGGCCACGTGTCCCAAAAA+AGG | + | chr5.1:1408040-1408059 | MS.gene024835:intron | 55.0% | |
| GGCCACGTGTCCCAAAAAAG+GGG | + | chr5.1:1408042-1408061 | MS.gene024835:intron | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.1:1409134-1409153 | None:intergenic | 55.0% | |
| ! | GTCCATATACCTGGGGTGTC+TGG | - | chr5.1:1407793-1407812 | None:intergenic | 55.0% |
| !!! | TGCCCCTTTTTTGGGACACG+TGG | - | chr5.1:1408047-1408066 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1407464 | 1409695 | 1407464 | ID=MS.gene024835 |
| chr5.1 | mRNA | 1407464 | 1409695 | 1407464 | ID=MS.gene024835.t1;Parent=MS.gene024835 |
| chr5.1 | exon | 1407464 | 1407540 | 1407464 | ID=MS.gene024835.t1.exon1;Parent=MS.gene024835.t1 |
| chr5.1 | CDS | 1407464 | 1407540 | 1407464 | ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1 |
| chr5.1 | exon | 1407645 | 1407916 | 1407645 | ID=MS.gene024835.t1.exon2;Parent=MS.gene024835.t1 |
| chr5.1 | CDS | 1407645 | 1407916 | 1407645 | ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1 |
| chr5.1 | exon | 1408721 | 1408897 | 1408721 | ID=MS.gene024835.t1.exon3;Parent=MS.gene024835.t1 |
| chr5.1 | CDS | 1408721 | 1408897 | 1408721 | ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1 |
| chr5.1 | exon | 1409112 | 1409695 | 1409112 | ID=MS.gene024835.t1.exon4;Parent=MS.gene024835.t1 |
| chr5.1 | CDS | 1409112 | 1409695 | 1409112 | ID=cds.MS.gene024835.t1;Parent=MS.gene024835.t1 |
| Gene Sequence |
| Protein sequence |
