AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001053

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001053.t1 MTR_5g006710 94.766 363 19 0 5 367 1 363 0.0 723
MS.gene001053.t1 MTR_5g006670 89.045 356 39 0 12 367 4 359 0.0 667
MS.gene001053.t1 MTR_5g006800 84.011 369 53 1 5 367 1 369 0.0 640
MS.gene001053.t1 MTR_5g006780 84.097 371 51 2 5 367 1 371 0.0 637
MS.gene001053.t1 MTR_5g006740 80.110 362 66 1 12 367 4 365 0.0 612
MS.gene001053.t1 MTR_5g006750 79.784 371 67 2 5 367 1 371 0.0 611
MS.gene001053.t1 MTR_5g008040 76.757 370 80 1 3 366 1 370 0.0 600
MS.gene001053.t1 MTR_5g006740 76.519 362 62 2 12 367 4 348 0.0 568
MS.gene001053.t1 MTR_3g115600 71.348 356 100 1 14 367 8 363 0.0 536
MS.gene001053.t1 MTR_5g006720 70.933 375 65 3 10 367 5 352 0.0 531
MS.gene001053.t1 MTR_4g125470 52.646 378 160 3 8 366 11 388 1.29e-143 413
MS.gene001053.t1 MTR_5g006730 94.872 117 6 0 5 121 1 117 1.83e-78 237
MS.gene001053.t1 MTR_3g096570 77.465 71 16 0 173 243 8 78 1.09e-30 118
MS.gene001053.t1 MTR_3g096562 67.901 81 26 0 163 243 162 242 1.11e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001053.t1 AT1G76690 73.046 371 94 1 3 367 1 371 0.0 568
MS.gene001053.t1 AT1G76680 72.900 369 94 2 5 367 1 369 0.0 564
MS.gene001053.t1 AT1G76680 68.274 394 94 3 5 367 1 394 0.0 550
MS.gene001053.t1 AT1G09400 70.370 324 96 0 22 345 1 324 1.25e-177 496
MS.gene001053.t1 AT1G09400 72.348 264 73 0 82 345 2 265 5.47e-147 416
MS.gene001053.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene001053.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene001053.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene001053.t1 AT1G17990 71.542 253 69 2 14 264 7 258 2.16e-135 387
MS.gene001053.t1 AT1G18020 71.542 253 69 2 14 264 7 258 2.16e-135 387
MS.gene001053.t1 AT1G17990 68.379 253 69 3 14 264 7 250 1.08e-126 365

Find 84 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.196300 5.4:-2355399 None:intergenic
AGGGCAGACCTTGTTGTTTA+TGG 0.231299 5.4:+2355357 MS.gene001053:CDS
TCAATGCTATAGCAGATAAT+AGG 0.232603 5.4:+2355337 MS.gene001053:CDS
TATGAGAAAACCACCTTTAG+AGG 0.233951 5.4:-2353721 None:intergenic
TATTTAAATGGGTATCAAAA+TGG 0.268737 5.4:+2353462 None:intergenic
TCATCATTTCAGAGTTGTTT+TGG 0.287756 5.4:+2353626 MS.gene001053:intron
CTCCTCTCAATAAATATAAC+AGG 0.291526 5.4:+2355430 MS.gene001053:CDS
TATGATCTCATTCTTGTTAG+TGG 0.293944 5.4:-2353651 None:intergenic
GCTGGAAGGGTTTCAAATTC+AGG 0.316380 5.4:+2353888 MS.gene001053:CDS
ATCCAAACACACCAGGTATA+TGG 0.318288 5.4:+2353781 MS.gene001053:CDS
AATGGTACTTTCATGGTTGC+AGG 0.322861 5.4:+2355291 MS.gene001053:CDS
GGCTTTCAATGGTACTTTCA+TGG 0.340526 5.4:+2355284 MS.gene001053:CDS
GTCCATATACCTGGTGTGTT+TGG 0.341076 5.4:-2353783 None:intergenic
GCATTAAGAGCAAATCTCTT+TGG 0.352480 5.4:-2355408 None:intergenic
CTCATTGGCACCAGACTGTA+AGG 0.356523 5.4:-2355258 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.4:+2355152 MS.gene001053:CDS
TGATCCGGTGGTAGGTTATA+CGG 0.367077 5.4:+2355470 MS.gene001053:CDS
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.4:-2355150 None:intergenic
TTATCTTTCATGAATTGTTC+AGG 0.388133 5.4:-2354970 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.388704 5.4:-2353523 None:intergenic
TCATGAACCGCATCTACAAT+AGG 0.389733 5.4:-2353831 None:intergenic
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.4:+2355078 MS.gene001053:CDS
GAATCGTTGTCGATTTCCTT+TGG 0.398546 5.4:+2355032 MS.gene001053:CDS
AATGACAGAACAGATGAATA+TGG 0.401093 5.4:+2354997 MS.gene001053:CDS
TAAGGTGTAAGTAAAGGAAT+TGG 0.408790 5.4:-2353505 None:intergenic
GATATTGGTGCTTGTCCATT+CGG 0.411160 5.4:-2354621 None:intergenic
CTGAAATCATTGACAATATG+AGG 0.422538 5.4:-2354720 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.422831 5.4:-2355273 None:intergenic
TTCTGTCAAATTTGGCATGC+TGG 0.423347 5.4:+2353870 MS.gene001053:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.4:-2355114 None:intergenic
CAATGCTATAGCAGATAATA+GGG 0.441084 5.4:+2355338 MS.gene001053:CDS
GAAGCAGTTGCGAATGAGAT+AGG 0.444031 5.4:+2355063 MS.gene001053:CDS
GTCAAATTTGGCATGCTGGA+AGG 0.444257 5.4:+2353874 MS.gene001053:CDS
TTTACTTACACCTTACAAGA+TGG 0.452565 5.4:+2353513 MS.gene001053:CDS
GACTCTAATCCAAATGCATT+GGG 0.453689 5.4:+2355141 MS.gene001053:CDS
GACATTCTACATTTCTGATC+CGG 0.456348 5.4:+2355455 MS.gene001053:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.460762 5.4:+2353536 MS.gene001053:CDS
TTTCTCATAGCTGAAGCTAC+TGG 0.465915 5.4:+2353735 MS.gene001053:CDS
TCAAATTTGGCATGCTGGAA+GGG 0.472329 5.4:+2353875 MS.gene001053:CDS
TCACGAAACCGAGACGACTA+AGG 0.488520 5.4:+2354685 MS.gene001053:CDS
TCATCTGTCCTTAGTCGTCT+CGG 0.489558 5.4:-2354693 None:intergenic
CAGTCTGGTGCCAATGAGAA+AGG 0.498444 5.4:+2355263 MS.gene001053:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.500651 5.4:+2354931 MS.gene001053:CDS
GTGGAACCAAGAATAAAATC+AGG 0.503178 5.4:+2355216 MS.gene001053:CDS
GACTTGTCTGTAGAAGATAT+TGG 0.505257 5.4:-2354636 None:intergenic
GAATAATACTTGATAGCAAT+GGG 0.505456 5.4:-2353690 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.4:+2355140 MS.gene001053:CDS
GATTGAAAGCCCTTACAGTC+TGG 0.513661 5.4:+2355248 MS.gene001053:CDS
TACTTGATAGCAATGGGTTG+AGG 0.515275 5.4:-2353684 None:intergenic
GGAGGCTATGACAGACAAGA+TGG 0.516327 5.4:+2355312 MS.gene001053:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.4:+2354750 MS.gene001053:CDS
TTACTTACACCTTACAAGAT+GGG 0.519268 5.4:+2353514 MS.gene001053:CDS
AGAATAATACTTGATAGCAA+TGG 0.520679 5.4:-2353691 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5.4:+2354940 MS.gene001053:CDS
TCCCTGTTATATTTATTGAG+AGG 0.534017 5.4:-2355432 None:intergenic
TATTCTCAGAGAACCTCTAA+AGG 0.545106 5.4:+2353708 MS.gene001053:CDS
ATCTTGTAAGGTGTAAGTAA+AGG 0.563877 5.4:-2353511 None:intergenic
CCAATGAGAAAGGCTTTCAA+TGG 0.571441 5.4:+2355273 MS.gene001053:CDS
CAATATTCTTTACTGTCACA+TGG 0.576936 5.4:+2355194 MS.gene001053:CDS
TACATTTCTGATCCGGTGGT+AGG 0.590489 5.4:+2355462 MS.gene001053:CDS
TAAATGGGTATCAAAATGGA+AGG 0.592945 5.4:+2353466 None:intergenic
TGCTCTTTAGTCCATATACC+TGG 0.594651 5.4:-2353792 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.4:-2354948 None:intergenic
TCTCAGAGAACCTCTAAAGG+TGG 0.598789 5.4:+2353711 MS.gene001053:CDS
CTTTCATGAATTGTTCAGGT+AGG 0.601902 5.4:-2354966 None:intergenic
TCATTGGCACCAGACTGTAA+GGG 0.602205 5.4:-2355257 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.607719 5.4:+2353756 MS.gene001053:CDS
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.4:-2355048 None:intergenic
ATTCTACATTTCTGATCCGG+TGG 0.614919 5.4:+2355458 MS.gene001053:CDS
CAAGGCTATCCAAACACACC+AGG 0.616594 5.4:+2353774 MS.gene001053:CDS
GAGGCTATGACAGACAAGAT+GGG 0.618192 5.4:+2355313 MS.gene001053:CDS
GGTACTTTCATGGTTGCAGG+AGG 0.622008 5.4:+2355294 MS.gene001053:CDS
CTAAAGAGCATGTTGAGGCG+TGG 0.628560 5.4:+2353805 MS.gene001053:CDS
CTAACAGTTTATCAACCGAA+TGG 0.632307 5.4:+2354606 MS.gene001053:intron
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.4:+2355117 MS.gene001053:CDS
GTGGAAACCTATTGTAGATG+CGG 0.642769 5.4:+2353824 MS.gene001053:CDS
GTAGATGCGGTTCATGACAA+AGG 0.644665 5.4:+2353837 MS.gene001053:CDS
TCCTCTCAATAAATATAACA+GGG 0.647614 5.4:+2355431 MS.gene001053:CDS
GACAGAACAGATGAATATGG+CGG 0.673922 5.4:+2355000 MS.gene001053:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.4:+2355197 MS.gene001053:CDS
ATGGACTAAAGAGCATGTTG+AGG 0.685195 5.4:+2353800 MS.gene001053:CDS
TAGTCCGTATAACCTACCAC+CGG 0.695454 5.4:-2355474 None:intergenic
ACAAACGACCATAAACAACA+AGG 0.713799 5.4:-2355365 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.716742 5.4:+2353840 MS.gene001053:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAATAAAATGATTT+GGG + chr5.4:2354502-2354521 MS.gene001053:intron 10.0%
!! TACAATAAAATAAAATGATT+TGG + chr5.4:2354501-2354520 MS.gene001053:intron 10.0%
!!! CTAAATTTTATTTTTATCAA+AGG - chr5.4:2354163-2354182 None:intergenic 10.0%
!!! ATTATTGATTATTACTATCT+CGG + chr5.4:2354537-2354556 MS.gene001053:intron 15.0%
!!! GTATATTTTTCTATCAAATT+TGG + chr5.4:2354074-2354093 MS.gene001053:intron 15.0%
!! AAATAGAATAGAAAGTGAAA+TGG - chr5.4:2353575-2353594 None:intergenic 20.0%
!! TTTAGAAAAAATAACACACA+GGG - chr5.4:2354306-2354325 None:intergenic 20.0%
!!! GTATATTTTTCTGTCAAATT+TGG + chr5.4:2353862-2353881 MS.gene001053:CDS 20.0%
!!! TAAAATAAAATGATTTGGGT+TGG + chr5.4:2354506-2354525 MS.gene001053:intron 20.0%
! AGACATCAATCAAATTACTT+GGG + chr5.4:2354466-2354485 MS.gene001053:intron 25.0%
! GATAAACTGTTAGATTAACA+AGG - chr5.4:2354599-2354618 None:intergenic 25.0%
! TAGACATCAATCAAATTACT+TGG + chr5.4:2354465-2354484 MS.gene001053:intron 25.0%
! TCCTCTCAATAAATATAACA+GGG + chr5.4:2355431-2355450 MS.gene001053:CDS 25.0%
! TTATCTTTCATGAATTGTTC+AGG - chr5.4:2354973-2354992 None:intergenic 25.0%
!! AGAATAATACTTGATAGCAA+TGG - chr5.4:2353694-2353713 None:intergenic 25.0%
!! CTTTAGAAAAAATAACACAC+AGG - chr5.4:2354307-2354326 None:intergenic 25.0%
!! GAATAATACTTGATAGCAAT+GGG - chr5.4:2353693-2353712 None:intergenic 25.0%
AACTGTTAGATTAACAAGGA+AGG - chr5.4:2354595-2354614 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.4:2354997-2355016 MS.gene001053:CDS 30.0%
ATCTTGTAAGGTGTAAGTAA+AGG - chr5.4:2353514-2353533 None:intergenic 30.0%
CAAATAGAATACTCACTGTA+TGG + chr5.4:2354562-2354581 MS.gene001053:intron 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.4:2355194-2355213 MS.gene001053:CDS 30.0%
CAATGCTATAGCAGATAATA+GGG + chr5.4:2355338-2355357 MS.gene001053:CDS 30.0%
CGCTAATAACTTCAATAATG+TGG - chr5.4:2354417-2354436 None:intergenic 30.0%
CTCAAATATAACATGCTCTA+AGG + chr5.4:2354049-2354068 MS.gene001053:intron 30.0%
CTCCTCTCAATAAATATAAC+AGG + chr5.4:2355430-2355449 MS.gene001053:CDS 30.0%
CTGAAATCATTGACAATATG+AGG - chr5.4:2354723-2354742 None:intergenic 30.0%
GTTATATTTGAGCTAGGTAA+TGG - chr5.4:2354041-2354060 None:intergenic 30.0%
TAAGGTGTAAGTAAAGGAAT+TGG - chr5.4:2353508-2353527 None:intergenic 30.0%
TATGATCTCATTCTTGTTAG+TGG - chr5.4:2353654-2353673 None:intergenic 30.0%
TCAATGCTATAGCAGATAAT+AGG + chr5.4:2355337-2355356 MS.gene001053:CDS 30.0%
TCCCTGTTATATTTATTGAG+AGG - chr5.4:2355435-2355454 None:intergenic 30.0%
TTACTTACACCTTACAAGAT+GGG + chr5.4:2353514-2353533 MS.gene001053:CDS 30.0%
TTCAATGTGATGTAAATTGC+AGG + chr5.4:2354907-2354926 MS.gene001053:intron 30.0%
TTCTATCAAATTTGGCATGT+TGG + chr5.4:2354082-2354101 MS.gene001053:intron 30.0%
TTTACTTACACCTTACAAGA+TGG + chr5.4:2353513-2353532 MS.gene001053:CDS 30.0%
TTTGTTGCAGAAAGTAGTAA+TGG + chr5.4:2354362-2354381 MS.gene001053:intron 30.0%
! GGTAATGGTAAAATTATGCT+AGG - chr5.4:2354026-2354045 None:intergenic 30.0%
! TAAATAAAAGTGTGACCAGA+AGG + chr5.4:2353946-2353965 MS.gene001053:intron 30.0%
! TCATCACCTGATTTTATTCT+TGG - chr5.4:2355225-2355244 None:intergenic 30.0%
! TCATCATTTCAGAGTTGTTT+TGG + chr5.4:2353626-2353645 MS.gene001053:intron 30.0%
! TTGATGATCTTAACCAATTG+AGG - chr5.4:2353990-2354009 None:intergenic 30.0%
!! AAATATAACATGCTCTAAGG+CGG + chr5.4:2354052-2354071 MS.gene001053:intron 30.0%
!! AATAAAATGATTTGGGTTGG+AGG + chr5.4:2354509-2354528 MS.gene001053:intron 30.0%
!! ATGTAAATTGCAGGTTTTGA+TGG + chr5.4:2354916-2354935 MS.gene001053:intron 30.0%
!! TGTAAATTGCAGGTTTTGAT+GGG + chr5.4:2354917-2354936 MS.gene001053:intron 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.4:2355152-2355171 MS.gene001053:CDS 35.0%
ACAAACGACCATAAACAACA+AGG - chr5.4:2355368-2355387 None:intergenic 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.4:2355140-2355159 MS.gene001053:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.4:2355153-2355172 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.4:2354762-2354781 MS.gene001053:intron 35.0%
CTAACAGTTTATCAACCGAA+TGG + chr5.4:2354606-2354625 MS.gene001053:intron 35.0%
CTTTCATGAATTGTTCAGGT+AGG - chr5.4:2354969-2354988 None:intergenic 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.4:2355117-2355136 None:intergenic 35.0%
GACATTCTACATTTCTGATC+CGG + chr5.4:2355455-2355474 MS.gene001053:CDS 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.4:2355141-2355160 MS.gene001053:CDS 35.0%
GACTTGTCTGTAGAAGATAT+TGG - chr5.4:2354639-2354658 None:intergenic 35.0%
GAGCATGTTATATTTGAGCT+AGG - chr5.4:2354047-2354066 None:intergenic 35.0%
GCATTAAGAGCAAATCTCTT+TGG - chr5.4:2355411-2355430 None:intergenic 35.0%
GTGGAACCAAGAATAAAATC+AGG + chr5.4:2355216-2355235 MS.gene001053:CDS 35.0%
GTTGGAAGAGTTTCAAATTC+AGG + chr5.4:2354100-2354119 MS.gene001053:intron 35.0%
TATGAGAAAACCACCTTTAG+AGG - chr5.4:2353724-2353743 None:intergenic 35.0%
TATTCTCAGAGAACCTCTAA+AGG + chr5.4:2353708-2353727 MS.gene001053:CDS 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.4:2355197-2355216 MS.gene001053:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.4:2353526-2353545 None:intergenic 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.4:2355117-2355136 MS.gene001053:CDS 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.4:2353536-2353555 MS.gene001053:CDS 35.0%
!! GGTAAGTTTACTGGTCTTTA+CGG + chr5.4:2354771-2354790 MS.gene001053:intron 35.0%
!! GTAAATTGCAGGTTTTGATG+GGG + chr5.4:2354918-2354937 MS.gene001053:intron 35.0%
AATGGTACTTTCATGGTTGC+AGG + chr5.4:2355291-2355310 MS.gene001053:CDS 40.0%
ACACAAATGGTTAGACCTTC+TGG - chr5.4:2353964-2353983 None:intergenic 40.0%
ACACACTTCCAATTCACAAC+TGG + chr5.4:2354191-2354210 MS.gene001053:intron 40.0%
ACGTGACACAAGCTACAAAT+AGG + chr5.4:2354388-2354407 MS.gene001053:intron 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.4:2355051-2355070 None:intergenic 40.0%
AGCTGATGATCTGAACCAAT+CGG - chr5.4:2354250-2354269 None:intergenic 40.0%
ATCCAAACACACCAGGTATA+TGG + chr5.4:2353781-2353800 MS.gene001053:CDS 40.0%
ATTCTACATTTCTGATCCGG+TGG + chr5.4:2355458-2355477 MS.gene001053:CDS 40.0%
CAATTCACAACTGGTGCAAA+CGG + chr5.4:2354200-2354219 MS.gene001053:intron 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.4:2355273-2355292 MS.gene001053:CDS 40.0%
CCAATTGAGGTTGACACAAA+TGG - chr5.4:2353977-2353996 None:intergenic 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.4:2355276-2355295 None:intergenic 40.0%
CCATTTGTGTCAACCTCAAT+TGG + chr5.4:2353974-2353993 MS.gene001053:intron 40.0%
GACAGAACAGATGAATATGG+CGG + chr5.4:2355000-2355019 MS.gene001053:CDS 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.4:2355078-2355097 MS.gene001053:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.4:2355402-2355421 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.4:2354750-2354769 MS.gene001053:CDS 40.0%
GGCTTTCAATGGTACTTTCA+TGG + chr5.4:2355284-2355303 MS.gene001053:CDS 40.0%
GTGGAAACCTATTGTAGATG+CGG + chr5.4:2353824-2353843 MS.gene001053:CDS 40.0%
TCAAATTTGGCATGCTGGAA+GGG + chr5.4:2353875-2353894 MS.gene001053:CDS 40.0%
TCATGAACCGCATCTACAAT+AGG - chr5.4:2353834-2353853 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.4:2353795-2353814 None:intergenic 40.0%
TTCTGTCAAATTTGGCATGC+TGG + chr5.4:2353870-2353889 MS.gene001053:CDS 40.0%
TTTCTCATAGCTGAAGCTAC+TGG + chr5.4:2353735-2353754 MS.gene001053:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.4:2354931-2354950 MS.gene001053:CDS 40.0%
! ATGGACTAAAGAGCATGTTG+AGG + chr5.4:2353800-2353819 MS.gene001053:CDS 40.0%
! GATATTGGTGCTTGTCCATT+CGG - chr5.4:2354624-2354643 None:intergenic 40.0%
!! GAATCGTTGTCGATTTCCTT+TGG + chr5.4:2355032-2355051 MS.gene001053:CDS 40.0%
!! TACTTGATAGCAATGGGTTG+AGG - chr5.4:2353687-2353706 None:intergenic 40.0%
CGTTTGCACCAGTTGTGAAT+TGG - chr5.4:2354202-2354221 None:intergenic 45.0%
GAAGCAGTTGCGAATGAGAT+AGG + chr5.4:2355063-2355082 MS.gene001053:CDS 45.0%
GAGGCTATGACAGACAAGAT+GGG + chr5.4:2355313-2355332 MS.gene001053:CDS 45.0%
GATTGAAAGCCCTTACAGTC+TGG + chr5.4:2355248-2355267 MS.gene001053:CDS 45.0%
GCTGGAAGGGTTTCAAATTC+AGG + chr5.4:2353888-2353907 MS.gene001053:CDS 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.4:2353837-2353856 MS.gene001053:CDS 45.0%
GTCAAATTTGGCATGCTGGA+AGG + chr5.4:2353874-2353893 MS.gene001053:CDS 45.0%
GTCCATATACCTGGTGTGTT+TGG - chr5.4:2353786-2353805 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.4:2354940-2354959 MS.gene001053:CDS 45.0%
TACATTTCTGATCCGGTGGT+AGG + chr5.4:2355462-2355481 MS.gene001053:CDS 45.0%
TAGTCCGTATAACCTACCAC+CGG - chr5.4:2355477-2355496 None:intergenic 45.0%
TCATCTGTCCTTAGTCGTCT+CGG - chr5.4:2354696-2354715 None:intergenic 45.0%
TCATTGGCACCAGACTGTAA+GGG - chr5.4:2355260-2355279 None:intergenic 45.0%
TGATCCGGTGGTAGGTTATA+CGG + chr5.4:2355470-2355489 MS.gene001053:CDS 45.0%
TGATCTGAACCAATCGGTGT+AGG - chr5.4:2354244-2354263 None:intergenic 45.0%
! TCTCAGAGAACCTCTAAAGG+TGG + chr5.4:2353711-2353730 MS.gene001053:CDS 45.0%
!! AGGGCAGACCTTGTTGTTTA+TGG + chr5.4:2355357-2355376 MS.gene001053:CDS 45.0%
!! ATAAAAATAAAATTTAGATT+AGG + chr5.4:2354166-2354185 MS.gene001053:intron 5.0%
CAAGGCTATCCAAACACACC+AGG + chr5.4:2353774-2353793 MS.gene001053:CDS 50.0%
CTATCTGTGCCTACACCGAT+TGG + chr5.4:2354232-2354251 MS.gene001053:intron 50.0%
CTCATTGGCACCAGACTGTA+AGG - chr5.4:2355261-2355280 None:intergenic 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.4:2353840-2353859 MS.gene001053:CDS 50.0%
GGAGGCTATGACAGACAAGA+TGG + chr5.4:2355312-2355331 MS.gene001053:CDS 50.0%
GGTACTTTCATGGTTGCAGG+AGG + chr5.4:2355294-2355313 MS.gene001053:CDS 50.0%
TCACGAAACCGAGACGACTA+AGG + chr5.4:2354685-2354704 MS.gene001053:CDS 50.0%
! CAGTCTGGTGCCAATGAGAA+AGG + chr5.4:2355263-2355282 MS.gene001053:CDS 50.0%
! CTAAAGAGCATGTTGAGGCG+TGG + chr5.4:2353805-2353824 MS.gene001053:CDS 50.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5.4:2353756-2353775 MS.gene001053:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.4:2354951-2354970 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 2353469 2355512 2353469 ID=MS.gene001053
chr5.4 mRNA 2353469 2355512 2353469 ID=MS.gene001053.t1;Parent=MS.gene001053
chr5.4 exon 2353469 2353557 2353469 ID=MS.gene001053.t1.exon1;Parent=MS.gene001053.t1
chr5.4 CDS 2353469 2353557 2353469 ID=cds.MS.gene001053.t1;Parent=MS.gene001053.t1
chr5.4 exon 2353638 2353909 2353638 ID=MS.gene001053.t1.exon2;Parent=MS.gene001053.t1
chr5.4 CDS 2353638 2353909 2353638 ID=cds.MS.gene001053.t1;Parent=MS.gene001053.t1
chr5.4 exon 2354613 2354771 2354613 ID=MS.gene001053.t1.exon3;Parent=MS.gene001053.t1
chr5.4 CDS 2354613 2354771 2354613 ID=cds.MS.gene001053.t1;Parent=MS.gene001053.t1
chr5.4 exon 2354929 2355512 2354929 ID=MS.gene001053.t1.exon4;Parent=MS.gene001053.t1
chr5.4 CDS 2354929 2355512 2354929 ID=cds.MS.gene001053.t1;Parent=MS.gene001053.t1
Gene Sequence

>MS.gene001053

ATGGGTATCAAAATGGAAGGTACTAACATCACTGATCCAATTCCTTTACTTACACCTTACAAGATGGGCAAATTCAATCTAGCTCATAGGTGCATACTACATACCATTTCACTTTCTATTCTATTTTATTTCAATGTTTTTCTCTTGCTAAATAATTTCATCATTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCATACAACAATGTTCCTCAACCCATTGCTATCAAGTATTATTCTCAGAGAACCTCTAAAGGTGGTTTTCTCATAGCTGAAGCTACTGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACACCAGGTATATGGACTAAAGAGCATGTTGAGGCGTGGAAACCTATTGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAAATTTGGCATGCTGGAAGGGTTTCAAATTCAGGTATGTATCTATTTCGTCATATCATTATTTATTATGTAAATAAAAGTGTGACCAGAAGGTCTAACCATTTGTGTCAACCTCAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTACCATTACCTAGCTCAAATATAACATGCTCTAAGGCGGTATATTTTTCTATCAAATTTGGCATGTTGGAAGAGTTTCAAATTCAGGTATTTATCTATTTGCTCAAATCATTAGTGTTTTTTTTCCTTTGATAAAAATAAAATTTAGATTAGGTGACACACTTCCAATTCACAACTGGTGCAAACGGAATGTTTAACTATCTGTGCCTACACCGATTGGTTCAGATCATCAGCTTTTATTTAACAGACTTATTATGAGTTTAACATGCCCTGTGTGTTATTTTTTCTAAAGTCATTTTTTTTGTCAAAAAACAAAATTTCAAGCAATTTGTTGCAGAAAGTAGTAATGGAAAACGTGACACAAGCTACAAATAGGAAACCACATTATTGAAGTTATTAGCGTTAACTAGCTCAAATATAACATTTTTTTTAGACATCAATCAAATTACTTGGGTCTACTATCAGTTACAATAAAATAAAATGATTTGGGTTGGAGGTTGTTATTATTGATTATTACTATCTCGGTGCAAATAGAATACTCACTGTATGGTCATGTTCCTTCCTTGTTAATCTAACAGTTTATCAACCGAATGGACAAGCACCAATATCTTCTACAGACAAGTCACTCACAAGCAATGATGTACAACAGTTCACGAAACCGAGACGACTAAGGACAGATGAAATTCCTCATATTGTCAATGATTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACGGATTTTTTACGAAATTGAAACATGCTTCAATCATAGTACAATACTGATATTTTTCAGAAACAAGAGTATTTGTTGCTTTAAAGCACAAAGACATTTTTCAAGTCACTTAACATGTTCAATGTGATGTAAATTGCAGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACCTGAACAATTCATGAAAGATAAAGTAAATGACAGAACAGATGAATATGGCGGATCGCTCGAGAATCGTTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGCGAATGAGATAGGAGCAGATAAAGTTGGAATCAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCTCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGGTGATGAAACGATTGAAAGCCCTTACAGTCTGGTGCCAATGAGAAAGGCTTTCAATGGTACTTTCATGGTTGCAGGAGGCTATGACAGACAAGATGGGATCAATGCTATAGCAGATAATAGGGCAGACCTTGTTGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCTCTTAATGCTCCTCTCAATAAATATAACAGGGAGACATTCTACATTTCTGATCCGGTGGTAGGTTATACGGACTATCCATTTCTTGAATGA
Protein sequence

>MS.gene001053.t1

MGIKMEGTNITDPIPLLTPYKMGKFNLAHRVVLAPLTRMRSYNNVPQPIAIKYYSQRTSKGGFLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGGIFFCQIWHAGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLRTDEIPHIVNDFRLAARNAIEAGFDGVEIHGAHGYLPEQFMKDKVNDRTDEYGGSLENRCRFPLEVVEAVANEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSGDETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIADNRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE