AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21812

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21812.t1 MTR_5g006710 97.796 363 8 0 1 363 1 363 0.0 743
MS.gene21812.t1 MTR_5g006670 86.777 363 44 1 1 363 1 359 0.0 657
MS.gene21812.t1 MTR_5g006800 84.298 363 51 1 7 363 7 369 0.0 642
MS.gene21812.t1 MTR_5g006780 83.288 365 53 2 7 363 7 371 0.0 629
MS.gene21812.t1 MTR_5g006750 80.000 365 65 2 7 363 7 371 0.0 608
MS.gene21812.t1 MTR_5g008040 77.446 368 77 1 1 362 3 370 0.0 603
MS.gene21812.t1 MTR_5g006740 78.453 362 72 1 8 363 4 365 0.0 601
MS.gene21812.t1 MTR_5g006740 74.862 362 68 2 8 363 4 348 0.0 558
MS.gene21812.t1 MTR_3g115600 71.067 356 101 1 10 363 8 363 0.0 541
MS.gene21812.t1 MTR_5g006720 70.933 375 65 3 6 363 5 352 0.0 529
MS.gene21812.t1 MTR_4g125470 53.514 370 153 3 12 362 19 388 2.24e-145 417
MS.gene21812.t1 MTR_5g006730 93.162 117 8 0 1 117 1 117 6.15e-76 231
MS.gene21812.t1 MTR_3g096570 78.873 71 15 0 169 239 8 78 1.31e-31 120
MS.gene21812.t1 MTR_3g096562 76.389 72 17 0 159 230 162 233 8.52e-30 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21812.t1 AT1G76690 72.358 369 96 1 1 363 3 371 0.0 568
MS.gene21812.t1 AT1G76680 71.816 369 98 2 1 363 1 369 0.0 565
MS.gene21812.t1 AT1G76680 67.259 394 98 3 1 363 1 394 0.0 552
MS.gene21812.t1 AT1G09400 70.370 324 96 0 18 341 1 324 2.47e-179 500
MS.gene21812.t1 AT1G09400 71.970 264 74 0 78 341 2 265 7.49e-148 418
MS.gene21812.t1 AT2G06050 51.688 385 163 3 1 362 1 385 3.70e-145 416
MS.gene21812.t1 AT2G06050 51.688 385 163 3 1 362 1 385 3.70e-145 416
MS.gene21812.t1 AT2G06050 51.688 385 163 3 1 362 1 385 3.70e-145 416
MS.gene21812.t1 AT1G17990 71.654 254 69 2 9 260 6 258 5.34e-137 391
MS.gene21812.t1 AT1G18020 71.654 254 69 2 9 260 6 258 5.34e-137 391
MS.gene21812.t1 AT1G17990 68.504 254 69 3 9 260 6 250 3.41e-128 368

Find 80 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.2:-1383074 None:intergenic
CTCCTCTCAACAAGTATAAT+AGG 0.238760 5.2:+1383105 MS.gene21812:CDS
TATGAGAAGACCACCTTTAG+AGG 0.244714 5.2:-1381741 None:intergenic
AAGGCAGATCTTGTAGTTTA+TGG 0.250368 5.2:+1383032 MS.gene21812:CDS
GCTGGAAGGGTTTCAAATTC+AGG 0.282625 5.2:+1381908 MS.gene21812:CDS
TATGATCTCATTCTTGTTAG+TGG 0.293944 5.2:-1381671 None:intergenic
ATCCAAACACACCAGGTATA+TGG 0.318288 5.2:+1381801 MS.gene21812:CDS
GGCTTTCAATGGCACTTTCA+TGG 0.332359 5.2:+1382959 MS.gene21812:CDS
GTCCATATACCTGGTGTGTT+TGG 0.341076 5.2:-1381803 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.2:+1382827 MS.gene21812:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.366938 5.2:-1383083 None:intergenic
CTCATTGGCACCAAACTGTA+AGG 0.370991 5.2:-1382933 None:intergenic
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.2:-1382825 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.388704 5.2:-1381540 None:intergenic
GACATTCTATATTTCTGATC+CGG 0.394293 5.2:+1383130 MS.gene21812:CDS
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.2:+1382753 MS.gene21812:CDS
GATTGAAAGCCCTTACAGTT+TGG 0.400850 5.2:+1382923 MS.gene21812:CDS
AAAGAATATTGTACTTATTG+AGG 0.409340 5.2:-1382857 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.410004 5.2:-1382948 None:intergenic
TATATTTCTGATCCGGTTGT+TGG 0.413679 5.2:+1383137 MS.gene21812:CDS
GAACCGTTGTCGATTTCCTT+TGG 0.415853 5.2:+1382707 MS.gene21812:CDS
TCCTCTCAACAAGTATAATA+GGG 0.419961 5.2:+1383106 MS.gene21812:CDS
TTCTGTCAAATTTGGCATGC+TGG 0.423347 5.2:+1381890 MS.gene21812:CDS
CAGTTTGGTGCCAATGAGAA+AGG 0.427427 5.2:+1382938 MS.gene21812:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.2:-1382789 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 5.2:-1382291 None:intergenic
GTCAAATTTGGCATGCTGGA+AGG 0.444257 5.2:+1381894 MS.gene21812:CDS
AACGACCGAACAGATGAATA+TGG 0.449164 5.2:+1382672 MS.gene21812:CDS
GACTCTAATCCAAATGCATT+GGG 0.453689 5.2:+1382816 MS.gene21812:CDS
AATGGCACTTTCATGGCTGC+AGG 0.454817 5.2:+1382966 MS.gene21812:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.460762 5.2:+1381553 MS.gene21812:CDS
AAGAATATTGTACTTATTGA+GGG 0.462924 5.2:-1382856 None:intergenic
TCAAATTTGGCATGCTGGAA+GGG 0.472329 5.2:+1381895 MS.gene21812:CDS
GAATAATACTTGACAGCAAT+GGG 0.472744 5.2:-1381710 None:intergenic
CTTCTCATAGCTGAAGCTAC+TGG 0.479639 5.2:+1381755 MS.gene21812:CDS
ATCCACCATATTCATCTGTT+CGG 0.480368 5.2:-1382677 None:intergenic
TCTTCTTACACCTTACAAGA+TGG 0.486533 5.2:+1381530 MS.gene21812:CDS
AGCTGAAGCTACTGGTGTCT+CGG 0.503821 5.2:+1381763 MS.gene21812:CDS
GAAATCGACAACGGTTCTCA+AGG 0.504808 5.2:-1382701 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.2:+1382815 MS.gene21812:CDS
TAGTCAGTGTAACCAACAAC+CGG 0.513490 5.2:-1383149 None:intergenic
GAAGCAGTTGTGAATGAGAT+AGG 0.516901 5.2:+1382738 MS.gene21812:CDS
TTTGATGGAGTTGAAATCCA+TGG 0.517258 5.2:+1382606 MS.gene21812:CDS
TACTTGACAGCAATGGGTTG+AGG 0.519656 5.2:-1381704 None:intergenic
TCATCTGTACTTAGCCGTCT+CGG 0.521373 5.2:-1382363 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.528070 5.2:-1382641 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5.2:+1382420 MS.gene21812:CDS
GTTGAAATCCATGGAGCTCA+TGG 0.535658 5.2:+1382615 MS.gene21812:CDS
AGAATAATACTTGACAGCAA+TGG 0.539287 5.2:-1381711 None:intergenic
CTTCTTACACCTTACAAGAT+GGG 0.542433 5.2:+1381531 MS.gene21812:CDS
TATTCTCAGAGAACCTCTAA+AGG 0.545106 5.2:+1381728 MS.gene21812:CDS
GACTTGTCAGTAGAAGATAT+CGG 0.550201 5.2:-1382306 None:intergenic
CAATGCTATAGCTGAAAACA+AGG 0.556236 5.2:+1383013 MS.gene21812:CDS
TGCTCTTTAGTCCATATACC+TGG 0.556652 5.2:-1381812 None:intergenic
TCATGAACCGCATCTACGAT+AGG 0.560519 5.2:-1381851 None:intergenic
CCAATGAGAAAGGCTTTCAA+TGG 0.567256 5.2:+1382948 MS.gene21812:CDS
TCATTGGCACCAAACTGTAA+GGG 0.572097 5.2:-1382932 None:intergenic
CAATATTCTTTACTGTCACA+TGG 0.576936 5.2:+1382869 MS.gene21812:CDS
AACAATTCACGAAACCGAGA+CGG 0.589361 5.2:+1382349 MS.gene21812:CDS
TCCCTATTATACTTGTTGAG+AGG 0.594177 5.2:-1383107 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.2:-1382623 None:intergenic
GGAGGCTATGACAGACAAGA+CGG 0.604358 5.2:+1382987 MS.gene21812:CDS
GGTGTCTCGGACACTGCTCA+AGG 0.605453 5.2:+1381776 MS.gene21812:CDS
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.2:-1382723 None:intergenic
AAATCGACAACGGTTCTCAA+GGG 0.613592 5.2:-1382700 None:intergenic
GAGGCTATGACAGACAAGAC+GGG 0.616560 5.2:+1382988 MS.gene21812:CDS
CAAGGCTATCCAAACACACC+AGG 0.616594 5.2:+1381794 MS.gene21812:CDS
ATCTTGTAAGGTGTAAGAAG+AGG 0.620167 5.2:-1381528 None:intergenic
GGCACTTTCATGGCTGCAGG+AGG 0.627009 5.2:+1382969 MS.gene21812:CDS
CGAACAGTTTATCAGCCGAA+TGG 0.629394 5.2:+1382276 MS.gene21812:intron
GTAGATGCGGTTCATGACAA+AGG 0.633675 5.2:+1381857 MS.gene21812:CDS
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.2:+1382792 MS.gene21812:CDS
CTAAAGAGCAAGTTGAGGCG+TGG 0.641191 5.2:+1381825 MS.gene21812:CDS
GACCGAACAGATGAATATGG+TGG 0.642811 5.2:+1382675 MS.gene21812:CDS
TCTCAGAGAACCTCTAAAGG+TGG 0.658369 5.2:+1381731 MS.gene21812:CDS
GTGGAAACCTATCGTAGATG+CGG 0.678720 5.2:+1381844 MS.gene21812:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.2:+1382872 MS.gene21812:CDS
ATGGACTAAAGAGCAAGTTG+AGG 0.687634 5.2:+1381820 MS.gene21812:CDS
CTTCCAAAGGAAATCGACAA+CGG 0.701023 5.2:-1382710 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.732511 5.2:+1381860 MS.gene21812:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATGAAAATAAAAGT+TGG + chr5.2:1381957-1381976 MS.gene21812:intron 10.0%
!! AAAGAATATTGTACTTATTG+AGG - chr5.2:1382860-1382879 None:intergenic 20.0%
!! AAATAGAATAGAAAGTGAAA+TGG - chr5.2:1381592-1381611 None:intergenic 20.0%
!! AAGAATATTGTACTTATTGA+GGG - chr5.2:1382859-1382878 None:intergenic 20.0%
!! ATAGTAAACTGAATATGATT+TGG + chr5.2:1382130-1382149 MS.gene21812:intron 20.0%
!! TAGTAAACTGAATATGATTT+GGG + chr5.2:1382131-1382150 MS.gene21812:intron 20.0%
!!! ATTGAAGCATTTTTCAATTT+CGG - chr5.2:1382471-1382490 None:intergenic 20.0%
!!! GTATATTTTTCTGTCAAATT+TGG + chr5.2:1381882-1381901 MS.gene21812:CDS 20.0%
!!! TCAAATATAACATGCTTTTT+AGG + chr5.2:1382074-1382093 MS.gene21812:intron 20.0%
! AGGCATTAATCAAATAACTT+AGG + chr5.2:1382094-1382113 MS.gene21812:intron 25.0%
! ATTCAGTTTACTATCAATGA+TGG - chr5.2:1382124-1382143 None:intergenic 25.0%
! ATTGTTGAGTATTACTATCA+AGG + chr5.2:1382163-1382182 MS.gene21812:intron 25.0%
!! ATTGATGATCTTAACCAATT+TGG - chr5.2:1382015-1382034 None:intergenic 25.0%
!! TTGATGATCTTAACCAATTT+GGG - chr5.2:1382014-1382033 None:intergenic 25.0%
!!! TTGAAGCATTTTTCAATTTC+GGG - chr5.2:1382470-1382489 None:intergenic 25.0%
AAGCATGTTATATTTGAGCT+AGG - chr5.2:1382071-1382090 None:intergenic 30.0%
AGAATAATACTTGACAGCAA+TGG - chr5.2:1381714-1381733 None:intergenic 30.0%
ATCTCCTAACATAATCAATG+TGG + chr5.2:1382569-1382588 MS.gene21812:intron 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.2:1382869-1382888 MS.gene21812:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.2:1382644-1382663 None:intergenic 30.0%
GAATAATACTTGACAGCAAT+GGG - chr5.2:1381713-1381732 None:intergenic 30.0%
GGTAATGCTAAAATTATGCT+AGG - chr5.2:1382050-1382069 None:intergenic 30.0%
TATGATCTCATTCTTGTTAG+TGG - chr5.2:1381674-1381693 None:intergenic 30.0%
TCCTCTCAACAAGTATAATA+GGG + chr5.2:1383106-1383125 MS.gene21812:CDS 30.0%
! AAACTGAATATGATTTGGGT+CGG + chr5.2:1382135-1382154 MS.gene21812:intron 30.0%
! AACCACTTTCTAATGTTTTG+AGG + chr5.2:1382189-1382208 MS.gene21812:intron 30.0%
! CATCATTTTCAGAGTTGTTT+TGG + chr5.2:1381646-1381665 MS.gene21812:intron 30.0%
! GACATTCTATATTTCTGATC+CGG + chr5.2:1383130-1383149 MS.gene21812:CDS 30.0%
!! AAAATAAAAGTTGGTGTGAG+CGG + chr5.2:1381966-1381985 MS.gene21812:intron 30.0%
!! ATTTGTTGCTTTAATGCACA+AGG + chr5.2:1382535-1382554 MS.gene21812:intron 30.0%
!! TCAGAAGCTGATTTTATTCT+TGG - chr5.2:1382900-1382919 None:intergenic 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.2:1382827-1382846 MS.gene21812:CDS 35.0%
AAGGCAGATCTTGTAGTTTA+TGG + chr5.2:1383032-1383051 MS.gene21812:CDS 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.2:1382815-1382834 MS.gene21812:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.2:1382828-1382847 None:intergenic 35.0%
ATCAATGTGGTGCAAATTGA+AGG + chr5.2:1382582-1382601 MS.gene21812:intron 35.0%
ATCCACCATATTCATCTGTT+CGG - chr5.2:1382680-1382699 None:intergenic 35.0%
ATCTTGTAAGGTGTAAGAAG+AGG - chr5.2:1381531-1381550 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.2:1382432-1382451 MS.gene21812:intron 35.0%
CAATGCTATAGCTGAAAACA+AGG + chr5.2:1383013-1383032 MS.gene21812:CDS 35.0%
CTCCTCTCAACAAGTATAAT+AGG + chr5.2:1383105-1383124 MS.gene21812:CDS 35.0%
CTTCTTACACCTTACAAGAT+GGG + chr5.2:1381531-1381550 MS.gene21812:CDS 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.2:1382792-1382811 None:intergenic 35.0%
GACCTCAAAACATTAGAAAG+TGG - chr5.2:1382194-1382213 None:intergenic 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.2:1382816-1382835 MS.gene21812:CDS 35.0%
GACTTGTCAGTAGAAGATAT+CGG - chr5.2:1382309-1382328 None:intergenic 35.0%
GATAAACTGTTCGATTCACA+AGG - chr5.2:1382269-1382288 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG - chr5.2:1383086-1383105 None:intergenic 35.0%
TATTCTCAGAGAACCTCTAA+AGG + chr5.2:1381728-1381747 MS.gene21812:CDS 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.2:1382872-1382891 MS.gene21812:CDS 35.0%
TCTTCTTACACCTTACAAGA+TGG + chr5.2:1381530-1381549 MS.gene21812:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.2:1381543-1381562 None:intergenic 35.0%
TTTGATGGAGTTGAAATCCA+TGG + chr5.2:1382606-1382625 MS.gene21812:CDS 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.2:1382792-1382811 MS.gene21812:CDS 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.2:1381553-1381572 MS.gene21812:CDS 35.0%
! TATATTTCTGATCCGGTTGT+TGG + chr5.2:1383137-1383156 MS.gene21812:CDS 35.0%
! TCCCTATTATACTTGTTGAG+AGG - chr5.2:1383110-1383129 None:intergenic 35.0%
! TGCACCACATTGATTATGTT+AGG - chr5.2:1382576-1382595 None:intergenic 35.0%
!! GTGCAAATTGAAGGTTTTGA+TGG + chr5.2:1382591-1382610 MS.gene21812:intron 35.0%
AAATCGACAACGGTTCTCAA+GGG - chr5.2:1382703-1382722 None:intergenic 40.0%
AACAATTCACGAAACCGAGA+CGG + chr5.2:1382349-1382368 MS.gene21812:CDS 40.0%
AACGACCGAACAGATGAATA+TGG + chr5.2:1382672-1382691 MS.gene21812:CDS 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.2:1382726-1382745 None:intergenic 40.0%
ATCCAAACACACCAGGTATA+TGG + chr5.2:1381801-1381820 MS.gene21812:CDS 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.2:1382948-1382967 MS.gene21812:CDS 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.2:1382951-1382970 None:intergenic 40.0%
CTTCCAAAGGAAATCGACAA+CGG - chr5.2:1382713-1382732 None:intergenic 40.0%
GAAGCAGTTGTGAATGAGAT+AGG + chr5.2:1382738-1382757 MS.gene21812:CDS 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.2:1382753-1382772 MS.gene21812:CDS 40.0%
GATTGAAAGCCCTTACAGTT+TGG + chr5.2:1382923-1382942 MS.gene21812:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.2:1383077-1383096 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.2:1382420-1382439 MS.gene21812:CDS 40.0%
TAGTCAGTGTAACCAACAAC+CGG - chr5.2:1383152-1383171 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5.2:1381744-1381763 None:intergenic 40.0%
TCAAATTTGGCATGCTGGAA+GGG + chr5.2:1381895-1381914 MS.gene21812:CDS 40.0%
TCATTGGCACCAAACTGTAA+GGG - chr5.2:1382935-1382954 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.2:1381815-1381834 None:intergenic 40.0%
TTCTGTCAAATTTGGCATGC+TGG + chr5.2:1381890-1381909 MS.gene21812:CDS 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG + chr5.2:1381820-1381839 MS.gene21812:CDS 40.0%
CCATCTGTGTCAACCCAAAT+TGG + chr5.2:1381998-1382017 MS.gene21812:intron 45.0%
CGAACAGTTTATCAGCCGAA+TGG + chr5.2:1382276-1382295 MS.gene21812:intron 45.0%
CTCATTGGCACCAAACTGTA+AGG - chr5.2:1382936-1382955 None:intergenic 45.0%
CTTCTCATAGCTGAAGCTAC+TGG + chr5.2:1381755-1381774 MS.gene21812:CDS 45.0%
GAAATCGACAACGGTTCTCA+AGG - chr5.2:1382704-1382723 None:intergenic 45.0%
GACCGAACAGATGAATATGG+TGG + chr5.2:1382675-1382694 MS.gene21812:CDS 45.0%
GCTGGAAGGGTTTCAAATTC+AGG + chr5.2:1381908-1381927 MS.gene21812:CDS 45.0%
GGCTTTCAATGGCACTTTCA+TGG + chr5.2:1382959-1382978 MS.gene21812:CDS 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.2:1381857-1381876 MS.gene21812:CDS 45.0%
GTCAAATTTGGCATGCTGGA+AGG + chr5.2:1381894-1381913 MS.gene21812:CDS 45.0%
GTCCATATACCTGGTGTGTT+TGG - chr5.2:1381806-1381825 None:intergenic 45.0%
GTGGAAACCTATCGTAGATG+CGG + chr5.2:1381844-1381863 MS.gene21812:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.2:1382615-1382634 MS.gene21812:CDS 45.0%
TCATCTGTACTTAGCCGTCT+CGG - chr5.2:1382366-1382385 None:intergenic 45.0%
TCATGAACCGCATCTACGAT+AGG - chr5.2:1381854-1381873 None:intergenic 45.0%
! CTGAATATGATTTGGGTCGG+AGG + chr5.2:1382138-1382157 MS.gene21812:intron 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr5.2:1382294-1382313 None:intergenic 45.0%
! TCTCAGAGAACCTCTAAAGG+TGG + chr5.2:1381731-1381750 MS.gene21812:CDS 45.0%
!! CAGTTTGGTGCCAATGAGAA+AGG + chr5.2:1382938-1382957 MS.gene21812:CDS 45.0%
!! CCAATTTGGGTTGACACAGA+TGG - chr5.2:1382001-1382020 None:intergenic 45.0%
!! GAACCGTTGTCGATTTCCTT+TGG + chr5.2:1382707-1382726 MS.gene21812:CDS 45.0%
!! TAAAAGTTGGTGTGAGCGGA+AGG + chr5.2:1381970-1381989 MS.gene21812:intron 45.0%
!! TACTTGACAGCAATGGGTTG+AGG - chr5.2:1381707-1381726 None:intergenic 45.0%
AATGGCACTTTCATGGCTGC+AGG + chr5.2:1382966-1382985 MS.gene21812:CDS 50.0%
AGCTGAAGCTACTGGTGTCT+CGG + chr5.2:1381763-1381782 MS.gene21812:CDS 50.0%
CAAGGCTATCCAAACACACC+AGG + chr5.2:1381794-1381813 MS.gene21812:CDS 50.0%
GAGGCTATGACAGACAAGAC+GGG + chr5.2:1382988-1383007 MS.gene21812:CDS 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.2:1381860-1381879 MS.gene21812:CDS 50.0%
GGAGGCTATGACAGACAAGA+CGG + chr5.2:1382987-1383006 MS.gene21812:CDS 50.0%
! CTAAAGAGCAAGTTGAGGCG+TGG + chr5.2:1381825-1381844 MS.gene21812:CDS 50.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.2:1382626-1382645 None:intergenic 55.0%
GGCACTTTCATGGCTGCAGG+AGG + chr5.2:1382969-1382988 MS.gene21812:CDS 60.0%
GGTGTCTCGGACACTGCTCA+AGG + chr5.2:1381776-1381795 MS.gene21812:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1381498 1383187 1381498 ID=MS.gene21812
chr5.2 mRNA 1381498 1383187 1381498 ID=MS.gene21812.t1;Parent=MS.gene21812
chr5.2 exon 1381498 1381574 1381498 ID=MS.gene21812.t1.exon1;Parent=MS.gene21812.t1
chr5.2 CDS 1381498 1381574 1381498 ID=cds.MS.gene21812.t1;Parent=MS.gene21812.t1
chr5.2 exon 1381658 1381929 1381658 ID=MS.gene21812.t1.exon2;Parent=MS.gene21812.t1
chr5.2 CDS 1381658 1381929 1381658 ID=cds.MS.gene21812.t1;Parent=MS.gene21812.t1
chr5.2 exon 1382283 1382441 1382283 ID=MS.gene21812.t1.exon3;Parent=MS.gene21812.t1
chr5.2 CDS 1382283 1382441 1382283 ID=cds.MS.gene21812.t1;Parent=MS.gene21812.t1
chr5.2 exon 1382604 1383187 1382604 ID=MS.gene21812.t1.exon4;Parent=MS.gene21812.t1
chr5.2 CDS 1382604 1383187 1382604 ID=cds.MS.gene21812.t1;Parent=MS.gene21812.t1
Gene Sequence

>MS.gene21812

ATGGAAGCTGCTAACATCACTGATTCAATTCCTCTTCTTACACCTTACAAGATGGGCAAATTCAATCTAGCTCATAGGTGCATACTACATACCATTTCACTTTCTATTCTATTTTATTTTAATGTTTTGCTCTTGCTAAATAATTTCACATCATTTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCATACAACAATGTTCCTCAACCCATTGCTGTCAAGTATTATTCTCAGAGAACCTCTAAAGGTGGTCTTCTCATAGCTGAAGCTACTGGTGTCTCGGACACTGCTCAAGGCTATCCAAACACACCAGGTATATGGACTAAAGAGCAAGTTGAGGCGTGGAAACCTATCGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAAATTTGGCATGCTGGAAGGGTTTCAAATTCAGGTTTGTATCTATTTCGTCATATCATTATTTATTATGAAAATAAAAGTTGGTGTGAGCGGAAGGTCTCACCATCTGTGTCAACCCAAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTAGCATTACCTAGCTCAAATATAACATGCTTTTTAGGCATTAATCAAATAACTTAGGTCTACCATCATTGATAGTAAACTGAATATGATTTGGGTCGGAGGTTATTGTTGAGTATTACTATCAAGGTGTAACCACTTTCTAATGTTTTGAGGTCTACTCACATTTATGCAAATAGAATACTCACTCAATGTATGTTCATGTTTTTTCCTTGTGAATCGAACAGTTTATCAGCCGAATGGACAAGCACCGATATCTTCTACTGACAAGTCACTCACAAGCAATGATGTACAACAATTCACGAAACCGAGACGGCTAAGTACAGATGAAATTTCTCATATTGTCAATGATTTCAGACTTGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACAAACGCCCGAAATTGAAAAATGCTTCAATCATATTCATAGTATACAATATTAATATTTTTAACAAAAATGACTATTTGTTGCTTTAATGCACAAGGACATTTTTCAAATCTCCTAACATAATCAATGTGGTGCAAATTGAAGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATCAAGTGAACGACCGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGTGAATGAGATAGGAGCAGATAAAGTTGGAATTAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCCCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGCTTCTGAAACGATTGAAAGCCCTTACAGTTTGGTGCCAATGAGAAAGGCTTTCAATGGCACTTTCATGGCTGCAGGAGGCTATGACAGACAAGACGGGATCAATGCTATAGCTGAAAACAAGGCAGATCTTGTAGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCACTTAATGCTCCTCTCAACAAGTATAATAGGGAGACATTCTATATTTCTGATCCGGTTGTTGGTTACACTGACTATCCATTTCTCGAATGA
Protein sequence

>MS.gene21812.t1

MEAANITDSIPLLTPYKMGKFNLAHRVVLAPLTRMRSYNNVPQPIAVKYYSQRTSKGGLLIAEATGVSDTAQGYPNTPGIWTKEQVEAWKPIVDAVHDKGGIFFCQIWHAGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLSTDEISHIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDQVNDRTDEYGGSLENRCRFPLEVVEAVVNEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSASETIESPYSLVPMRKAFNGTFMAAGGYDRQDGINAIAENKADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE